Multiple sequence alignment - TraesCS7A01G404900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G404900 chr7A 100.000 3453 0 0 1 3453 587517498 587520950 0.000000e+00 6377
1 TraesCS7A01G404900 chr7A 96.546 1882 42 8 984 2843 588740448 588738568 0.000000e+00 3094
2 TraesCS7A01G404900 chr7A 96.508 1489 28 5 983 2453 586693706 586692224 0.000000e+00 2440
3 TraesCS7A01G404900 chr7A 90.909 814 51 14 162 964 588751484 588750683 0.000000e+00 1072
4 TraesCS7A01G404900 chr7A 91.905 630 45 3 2825 3453 588738558 588737934 0.000000e+00 876
5 TraesCS7A01G404900 chr7A 87.773 229 14 7 333 555 588740837 588740617 4.420000e-64 255
6 TraesCS7A01G404900 chr7D 96.292 1861 59 4 984 2839 514092356 514094211 0.000000e+00 3046
7 TraesCS7A01G404900 chr7D 94.236 1492 58 16 984 2453 513311946 513313431 0.000000e+00 2254
8 TraesCS7A01G404900 chr7D 96.788 965 29 1 1642 2606 515237029 515236067 0.000000e+00 1609
9 TraesCS7A01G404900 chr7D 96.580 965 31 1 1642 2606 515220823 515219861 0.000000e+00 1598
10 TraesCS7A01G404900 chr7D 96.970 660 20 0 984 1643 515237993 515237334 0.000000e+00 1109
11 TraesCS7A01G404900 chr7D 96.667 660 22 0 984 1643 515221787 515221128 0.000000e+00 1098
12 TraesCS7A01G404900 chr7D 89.802 706 57 10 1 694 514090135 514090837 0.000000e+00 891
13 TraesCS7A01G404900 chr7D 89.769 606 56 4 2841 3446 89519273 89519872 0.000000e+00 771
14 TraesCS7A01G404900 chr7D 92.039 515 27 13 333 839 515222519 515222011 0.000000e+00 712
15 TraesCS7A01G404900 chr7D 91.845 515 28 13 333 839 515238725 515238217 0.000000e+00 706
16 TraesCS7A01G404900 chr7D 88.986 345 29 5 621 964 513311477 513311813 5.330000e-113 418
17 TraesCS7A01G404900 chr7D 91.064 235 19 2 2605 2839 515219767 515219535 2.000000e-82 316
18 TraesCS7A01G404900 chr7D 90.638 235 21 1 2605 2839 515235973 515235740 9.310000e-81 311
19 TraesCS7A01G404900 chr7D 93.056 144 7 3 697 839 514091991 514092132 1.260000e-49 207
20 TraesCS7A01G404900 chr7D 96.296 108 4 0 2732 2839 568402839 568402732 9.850000e-41 178
21 TraesCS7A01G404900 chr7D 92.771 83 4 2 882 964 514092143 514092223 6.050000e-23 119
22 TraesCS7A01G404900 chr7D 87.629 97 10 2 558 652 513256522 513256618 1.010000e-20 111
23 TraesCS7A01G404900 chr7B 93.262 1499 56 22 984 2443 545975292 545973800 0.000000e+00 2167
24 TraesCS7A01G404900 chr7B 93.053 1497 59 19 986 2443 544881136 544882626 0.000000e+00 2146
25 TraesCS7A01G404900 chr7B 92.929 1499 61 21 984 2443 544982212 544983704 0.000000e+00 2139
26 TraesCS7A01G404900 chr7B 90.113 708 55 10 1 698 544966253 544966955 0.000000e+00 905
27 TraesCS7A01G404900 chr7B 89.542 612 59 2 2843 3453 145972362 145971755 0.000000e+00 771
28 TraesCS7A01G404900 chr7B 89.080 348 26 8 623 968 544880669 544881006 4.120000e-114 422
29 TraesCS7A01G404900 chr7B 90.854 164 5 5 686 841 544981827 544981988 9.710000e-51 211
30 TraesCS7A01G404900 chr7B 92.000 125 8 1 840 964 545975547 545975425 1.270000e-39 174
31 TraesCS7A01G404900 chr5D 89.836 610 58 1 2844 3453 46062109 46061504 0.000000e+00 780
32 TraesCS7A01G404900 chr5D 89.180 610 60 3 2845 3453 481974034 481974638 0.000000e+00 756
33 TraesCS7A01G404900 chr5D 84.232 241 29 7 90 327 248589031 248588797 3.470000e-55 226
34 TraesCS7A01G404900 chr2B 89.482 618 59 2 2839 3453 29219868 29220482 0.000000e+00 776
35 TraesCS7A01G404900 chr2B 80.205 293 42 11 48 327 798707559 798707270 4.520000e-49 206
36 TraesCS7A01G404900 chr1B 89.491 609 57 3 2848 3453 667961107 667960503 0.000000e+00 763
37 TraesCS7A01G404900 chr3B 89.456 607 59 3 2848 3453 99674148 99673546 0.000000e+00 761
38 TraesCS7A01G404900 chr3A 88.766 632 52 8 2833 3453 340280720 340281343 0.000000e+00 756
39 TraesCS7A01G404900 chr3D 81.145 297 37 13 43 325 481916201 481915910 1.610000e-53 220
40 TraesCS7A01G404900 chr1D 81.132 265 41 6 70 327 15052045 15052307 1.620000e-48 204
41 TraesCS7A01G404900 chr2D 80.899 267 42 6 70 329 618294750 618294486 5.840000e-48 202
42 TraesCS7A01G404900 chr2D 98.113 106 2 0 2731 2836 100433592 100433697 5.880000e-43 185
43 TraesCS7A01G404900 chr5A 80.769 260 41 6 75 327 697599047 697598790 9.780000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G404900 chr7A 587517498 587520950 3452 False 6377.000000 6377 100.000000 1 3453 1 chr7A.!!$F1 3452
1 TraesCS7A01G404900 chr7A 586692224 586693706 1482 True 2440.000000 2440 96.508000 983 2453 1 chr7A.!!$R1 1470
2 TraesCS7A01G404900 chr7A 588737934 588740837 2903 True 1408.333333 3094 92.074667 333 3453 3 chr7A.!!$R3 3120
3 TraesCS7A01G404900 chr7A 588750683 588751484 801 True 1072.000000 1072 90.909000 162 964 1 chr7A.!!$R2 802
4 TraesCS7A01G404900 chr7D 513311477 513313431 1954 False 1336.000000 2254 91.611000 621 2453 2 chr7D.!!$F3 1832
5 TraesCS7A01G404900 chr7D 514090135 514094211 4076 False 1065.750000 3046 92.980250 1 2839 4 chr7D.!!$F4 2838
6 TraesCS7A01G404900 chr7D 515235740 515238725 2985 True 933.750000 1609 94.060250 333 2839 4 chr7D.!!$R3 2506
7 TraesCS7A01G404900 chr7D 515219535 515222519 2984 True 931.000000 1598 94.087500 333 2839 4 chr7D.!!$R2 2506
8 TraesCS7A01G404900 chr7D 89519273 89519872 599 False 771.000000 771 89.769000 2841 3446 1 chr7D.!!$F1 605
9 TraesCS7A01G404900 chr7B 544880669 544882626 1957 False 1284.000000 2146 91.066500 623 2443 2 chr7B.!!$F2 1820
10 TraesCS7A01G404900 chr7B 544981827 544983704 1877 False 1175.000000 2139 91.891500 686 2443 2 chr7B.!!$F3 1757
11 TraesCS7A01G404900 chr7B 545973800 545975547 1747 True 1170.500000 2167 92.631000 840 2443 2 chr7B.!!$R2 1603
12 TraesCS7A01G404900 chr7B 544966253 544966955 702 False 905.000000 905 90.113000 1 698 1 chr7B.!!$F1 697
13 TraesCS7A01G404900 chr7B 145971755 145972362 607 True 771.000000 771 89.542000 2843 3453 1 chr7B.!!$R1 610
14 TraesCS7A01G404900 chr5D 46061504 46062109 605 True 780.000000 780 89.836000 2844 3453 1 chr5D.!!$R1 609
15 TraesCS7A01G404900 chr5D 481974034 481974638 604 False 756.000000 756 89.180000 2845 3453 1 chr5D.!!$F1 608
16 TraesCS7A01G404900 chr2B 29219868 29220482 614 False 776.000000 776 89.482000 2839 3453 1 chr2B.!!$F1 614
17 TraesCS7A01G404900 chr1B 667960503 667961107 604 True 763.000000 763 89.491000 2848 3453 1 chr1B.!!$R1 605
18 TraesCS7A01G404900 chr3B 99673546 99674148 602 True 761.000000 761 89.456000 2848 3453 1 chr3B.!!$R1 605
19 TraesCS7A01G404900 chr3A 340280720 340281343 623 False 756.000000 756 88.766000 2833 3453 1 chr3A.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 204 0.250901 ATGAAGCCACCAAAGACGCT 60.251 50.0 0.00 0.0 0.0 5.07 F
1201 2559 0.457337 GGTACGTACGTGCTGAAGGG 60.457 60.0 30.65 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 3569 0.671796 CGCCTATGGTGGTGTCGATA 59.328 55.0 0.00 0.00 33.25 2.92 R
2649 4428 0.164217 CGTTTAGGCACGCGCTAAAA 59.836 50.0 15.81 4.32 38.60 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 109 7.058467 CGCTTATATATACGCACATACTCATCG 59.942 40.741 18.24 0.00 0.00 3.84
109 123 7.543520 CACATACTCATCGCTATGAACATACAT 59.456 37.037 2.22 0.00 41.57 2.29
115 129 7.206687 TCATCGCTATGAACATACATGTACAA 58.793 34.615 7.96 0.00 40.80 2.41
120 134 7.598869 CGCTATGAACATACATGTACAACCTAT 59.401 37.037 7.96 2.16 40.80 2.57
127 141 9.610104 AACATACATGTACAACCTATCCCTATA 57.390 33.333 7.96 0.00 40.80 1.31
135 149 4.975794 ACAACCTATCCCTATAAGCACCTT 59.024 41.667 0.00 0.00 0.00 3.50
141 155 2.957006 TCCCTATAAGCACCTTCGAGAC 59.043 50.000 0.00 0.00 0.00 3.36
148 162 1.412710 AGCACCTTCGAGACACTGAAA 59.587 47.619 0.00 0.00 0.00 2.69
152 166 1.000607 CCTTCGAGACACTGAAACCGA 60.001 52.381 0.00 0.00 0.00 4.69
172 186 7.002250 ACCGACATATCATCTTGAGATTGAT 57.998 36.000 9.36 9.36 31.21 2.57
190 204 0.250901 ATGAAGCCACCAAAGACGCT 60.251 50.000 0.00 0.00 0.00 5.07
203 217 1.366679 AGACGCTTCGTAGTCGATGA 58.633 50.000 11.42 0.00 45.65 2.92
204 218 1.736126 AGACGCTTCGTAGTCGATGAA 59.264 47.619 11.42 0.00 45.65 2.57
212 226 4.151258 TCGTAGTCGATGAAAACGTCTT 57.849 40.909 0.00 0.00 41.35 3.01
242 256 3.219928 ACGCATCGCCGGAGATCT 61.220 61.111 18.68 0.00 0.00 2.75
289 306 3.143010 AGGACTTGAACCCTGACGA 57.857 52.632 0.00 0.00 0.00 4.20
327 344 2.025321 GTCCACCTAACCATCCAACCAT 60.025 50.000 0.00 0.00 0.00 3.55
395 416 6.267496 ACCATGCTTAAAACACACTATTCC 57.733 37.500 0.00 0.00 0.00 3.01
412 433 6.425114 CACTATTCCGATGAAGTATTTGGGAG 59.575 42.308 0.00 0.00 33.05 4.30
413 434 4.837093 TTCCGATGAAGTATTTGGGAGT 57.163 40.909 0.00 0.00 0.00 3.85
524 550 2.036346 AGCAACTTGCCAACTTGGAATC 59.964 45.455 12.37 0.00 46.52 2.52
606 633 6.072175 ACACGATTACCTTTTTGTATGCATGT 60.072 34.615 10.16 0.00 0.00 3.21
648 675 7.382759 TGAACCTTTTAAAAGACACAACAACAC 59.617 33.333 26.11 7.16 38.28 3.32
791 1975 7.315066 ACACCTTATTTGGGATGAAATGTTT 57.685 32.000 0.00 0.00 0.00 2.83
912 2105 3.371285 GGAATCGAAGTAGCAAAGGTGAC 59.629 47.826 0.00 0.00 0.00 3.67
924 2117 3.244044 GCAAAGGTGACCCAAAAATAGCA 60.244 43.478 0.00 0.00 0.00 3.49
926 2119 5.363939 CAAAGGTGACCCAAAAATAGCAAA 58.636 37.500 0.00 0.00 0.00 3.68
927 2120 4.871933 AGGTGACCCAAAAATAGCAAAG 57.128 40.909 0.00 0.00 0.00 2.77
964 2157 3.853698 TAGCCGGCAACCACAACCC 62.854 63.158 31.54 0.00 0.00 4.11
974 2264 0.770557 ACCACAACCCCAAGCTCCTA 60.771 55.000 0.00 0.00 0.00 2.94
978 2268 1.541368 AACCCCAAGCTCCTAGCCA 60.541 57.895 0.00 0.00 43.77 4.75
1201 2559 0.457337 GGTACGTACGTGCTGAAGGG 60.457 60.000 30.65 0.00 0.00 3.95
1584 2942 5.277154 GCAAGATATTGCCAAACGTACGTAT 60.277 40.000 23.12 12.64 41.85 3.06
1720 3404 1.072159 GCTGGTGCTGGACTTCTGT 59.928 57.895 0.00 0.00 36.03 3.41
1870 3554 1.221566 CATCCACATGGGCGACTCA 59.778 57.895 0.00 0.00 36.21 3.41
1885 3569 2.941064 CGACTCATCCAATGTCAGCATT 59.059 45.455 0.00 0.00 45.42 3.56
2091 3775 2.499205 CGGCCTCCGCATCAAGTA 59.501 61.111 0.00 0.00 41.17 2.24
2206 3890 2.271944 AGTACTGCCCCAACAAACTC 57.728 50.000 0.00 0.00 0.00 3.01
2397 4081 0.322277 AAGACCATGGCTGTCTGCAG 60.322 55.000 13.04 7.63 42.10 4.41
2473 4157 7.116376 GCATGATTTCTTATCTCCGTATTTCGA 59.884 37.037 0.00 0.00 42.86 3.71
2663 4442 0.237498 GTTTCTTTTAGCGCGTGCCT 59.763 50.000 19.02 7.75 44.31 4.75
2670 4449 0.666880 TTAGCGCGTGCCTAAACGAA 60.667 50.000 19.02 0.00 46.49 3.85
2671 4450 1.346378 TAGCGCGTGCCTAAACGAAC 61.346 55.000 19.02 0.00 46.49 3.95
2672 4451 2.945615 GCGCGTGCCTAAACGAACA 61.946 57.895 10.56 0.00 46.49 3.18
2729 4508 6.712998 TGTCTCGTTTCCTTTGATAAAATGGA 59.287 34.615 0.00 0.00 0.00 3.41
2861 4672 4.752661 TGTTTATCGAAAAAGGGTTCCG 57.247 40.909 0.00 0.00 0.00 4.30
2898 4709 0.472471 AACCAACCGAGAGAGCCAAA 59.528 50.000 0.00 0.00 0.00 3.28
2903 4714 3.369471 CCAACCGAGAGAGCCAAAGATAA 60.369 47.826 0.00 0.00 0.00 1.75
3054 4865 2.348998 CACCAAGCTCCGAGCCTT 59.651 61.111 16.99 7.86 43.77 4.35
3156 4967 1.901085 GCGGTGTGGAGAGAGGAAT 59.099 57.895 0.00 0.00 0.00 3.01
3168 4979 0.326238 AGAGGAATGGTAGCCCCGAA 60.326 55.000 0.00 0.00 35.15 4.30
3302 5114 2.380285 AAACCGACCACCACCCTGT 61.380 57.895 0.00 0.00 0.00 4.00
3403 5222 1.374947 GACTAGGGCAACAGCACCA 59.625 57.895 0.00 0.00 39.74 4.17
3411 5230 2.112928 AACAGCACCATCGGCACA 59.887 55.556 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 5.412286 TGCGTATATATAAGCGTCTGTACCA 59.588 40.000 20.87 2.83 40.00 3.25
61 63 5.736358 GTGCGTATATATAAGCGTCTGTACC 59.264 44.000 20.87 3.34 40.00 3.34
95 109 8.833231 ATAGGTTGTACATGTATGTTCATAGC 57.167 34.615 9.18 3.90 41.97 2.97
109 123 5.306160 GGTGCTTATAGGGATAGGTTGTACA 59.694 44.000 0.00 0.00 0.00 2.90
115 129 3.833070 CGAAGGTGCTTATAGGGATAGGT 59.167 47.826 0.00 0.00 0.00 3.08
120 134 2.957006 GTCTCGAAGGTGCTTATAGGGA 59.043 50.000 0.00 0.00 0.00 4.20
127 141 1.040646 TCAGTGTCTCGAAGGTGCTT 58.959 50.000 0.00 0.00 0.00 3.91
135 149 1.026584 TGTCGGTTTCAGTGTCTCGA 58.973 50.000 0.00 0.00 0.00 4.04
141 155 5.812127 TCAAGATGATATGTCGGTTTCAGTG 59.188 40.000 0.00 0.00 0.00 3.66
148 162 6.410942 TCAATCTCAAGATGATATGTCGGT 57.589 37.500 0.00 0.00 34.49 4.69
152 166 7.390996 GGCTTCATCAATCTCAAGATGATATGT 59.609 37.037 6.01 0.00 47.00 2.29
172 186 0.465460 AAGCGTCTTTGGTGGCTTCA 60.465 50.000 0.00 0.00 41.57 3.02
203 217 3.203716 GTTCAGTGGGAGAAGACGTTTT 58.796 45.455 0.00 0.00 0.00 2.43
204 218 2.169769 TGTTCAGTGGGAGAAGACGTTT 59.830 45.455 0.00 0.00 0.00 3.60
212 226 0.037326 GATGCGTGTTCAGTGGGAGA 60.037 55.000 0.00 0.00 0.00 3.71
242 256 6.016610 GCTCGCATTTATTCCTGGGTTTATAA 60.017 38.462 0.00 0.00 0.00 0.98
287 304 1.066143 ACAGTGGTATTTCCCAGCTCG 60.066 52.381 0.00 0.00 34.43 5.03
289 306 1.282157 GGACAGTGGTATTTCCCAGCT 59.718 52.381 0.00 0.00 34.43 4.24
372 391 5.106317 CGGAATAGTGTGTTTTAAGCATGGT 60.106 40.000 0.00 0.00 0.00 3.55
395 416 5.391950 CCAACAACTCCCAAATACTTCATCG 60.392 44.000 0.00 0.00 0.00 3.84
473 496 4.946157 TCAAAATTCAGCTCCATCTCTTCC 59.054 41.667 0.00 0.00 0.00 3.46
474 497 5.879223 TCTCAAAATTCAGCTCCATCTCTTC 59.121 40.000 0.00 0.00 0.00 2.87
584 610 9.515020 AATAACATGCATACAAAAAGGTAATCG 57.485 29.630 0.00 0.00 0.00 3.34
636 663 8.419076 AAAGGAAATATTTGTGTTGTTGTGTC 57.581 30.769 5.17 0.00 0.00 3.67
754 1938 1.072266 AAGGTGTTGTAGGCATGGGA 58.928 50.000 0.00 0.00 0.00 4.37
757 1941 4.142182 CCCAAATAAGGTGTTGTAGGCATG 60.142 45.833 0.00 0.00 0.00 4.06
840 2033 0.250513 GCTCCATCTCGTGTTTCCCT 59.749 55.000 0.00 0.00 0.00 4.20
841 2034 0.250513 AGCTCCATCTCGTGTTTCCC 59.749 55.000 0.00 0.00 0.00 3.97
842 2035 1.363744 CAGCTCCATCTCGTGTTTCC 58.636 55.000 0.00 0.00 0.00 3.13
875 2068 2.414559 CGATTCCATGTTGCTTGTGTCC 60.415 50.000 0.00 0.00 0.00 4.02
912 2105 3.323403 TGTCCACCTTTGCTATTTTTGGG 59.677 43.478 0.00 0.00 0.00 4.12
924 2117 1.528309 CGGGTTGCTGTCCACCTTT 60.528 57.895 0.00 0.00 0.00 3.11
926 2119 3.953775 CCGGGTTGCTGTCCACCT 61.954 66.667 0.00 0.00 0.00 4.00
927 2120 3.785122 AACCGGGTTGCTGTCCACC 62.785 63.158 12.53 0.00 0.00 4.61
964 2157 2.363683 CTTTTCTGGCTAGGAGCTTGG 58.636 52.381 0.00 0.00 41.99 3.61
974 2264 2.800250 CTGTGGAATCCTTTTCTGGCT 58.200 47.619 0.00 0.00 0.00 4.75
978 2268 2.978156 TGGCTGTGGAATCCTTTTCT 57.022 45.000 0.00 0.00 0.00 2.52
1084 2394 1.067250 GACCATCTGCGCTCTCCTC 59.933 63.158 9.73 0.00 0.00 3.71
1118 2446 3.968837 ATGTCGTACTCCCCGCCCA 62.969 63.158 0.00 0.00 0.00 5.36
1309 2667 1.597742 GGATGATGATGGTCGGGTTG 58.402 55.000 0.00 0.00 0.00 3.77
1870 3554 4.512944 GTGTCGATAATGCTGACATTGGAT 59.487 41.667 1.63 0.00 46.08 3.41
1885 3569 0.671796 CGCCTATGGTGGTGTCGATA 59.328 55.000 0.00 0.00 33.25 2.92
2091 3775 1.881602 GACTTGGCGTCCTCGTACT 59.118 57.895 0.00 0.00 36.62 2.73
2206 3890 4.020617 TCGCCCTTGGAGGTGCAG 62.021 66.667 0.00 2.65 37.33 4.41
2397 4081 3.041940 CGGTGACCTTGACGTGGC 61.042 66.667 0.00 0.00 0.00 5.01
2459 4143 5.524971 TGGTACATTCGAAATACGGAGAT 57.475 39.130 0.00 0.00 42.82 2.75
2473 4157 9.220767 GAGAGAAATTAGAACACTTGGTACATT 57.779 33.333 0.00 0.00 39.30 2.71
2649 4428 0.164217 CGTTTAGGCACGCGCTAAAA 59.836 50.000 15.81 4.32 38.60 1.52
2670 4449 3.073678 TGCTCATGCTAATCAAACGTGT 58.926 40.909 0.00 0.00 40.48 4.49
2671 4450 3.745332 TGCTCATGCTAATCAAACGTG 57.255 42.857 0.00 0.00 40.48 4.49
2672 4451 4.970662 ATTGCTCATGCTAATCAAACGT 57.029 36.364 0.00 0.00 40.48 3.99
2729 4508 9.778741 TTTCAGTCAGATGTTAAATAGACAGTT 57.221 29.630 0.00 0.00 0.00 3.16
2898 4709 2.678190 GCTTTCGTCCCAGCACTTATCT 60.678 50.000 0.00 0.00 35.95 1.98
2903 4714 1.302033 CTGCTTTCGTCCCAGCACT 60.302 57.895 0.00 0.00 41.20 4.40
3005 4816 0.829990 TGGATGCAGCGGTCATAAGA 59.170 50.000 0.00 0.00 0.00 2.10
3008 4819 1.146041 GGTGGATGCAGCGGTCATA 59.854 57.895 0.00 0.00 0.00 2.15
3054 4865 2.028876 TGATTGGTATCGGCTCTTCGA 58.971 47.619 0.00 0.00 43.61 3.71
3060 4871 1.559682 AGGTGTTGATTGGTATCGGCT 59.440 47.619 0.00 0.00 33.23 5.52
3144 4955 1.692762 GGGCTACCATTCCTCTCTCCA 60.693 57.143 0.00 0.00 36.50 3.86
3156 4967 4.733725 AGGGCTTCGGGGCTACCA 62.734 66.667 3.41 0.00 40.22 3.25
3168 4979 3.003763 GGACCTTCGTGGAGGGCT 61.004 66.667 0.00 0.00 44.81 5.19
3220 5032 4.218312 GGAGAAATCCATATTGGCTTGGT 58.782 43.478 0.00 0.00 37.47 3.67
3302 5114 1.228124 CTTCTTGACCGGGTTGGCA 60.228 57.895 6.32 0.00 43.94 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.