Multiple sequence alignment - TraesCS7A01G403800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G403800 chr7A 100.000 2885 0 0 1 2885 584379133 584382017 0.000000e+00 5328
1 TraesCS7A01G403800 chr7A 90.734 831 67 7 11 838 511544270 511545093 0.000000e+00 1099
2 TraesCS7A01G403800 chr7A 94.382 89 4 1 2797 2885 719561525 719561612 5.010000e-28 135
3 TraesCS7A01G403800 chr7D 94.002 1217 53 4 839 2038 511933070 511934283 0.000000e+00 1825
4 TraesCS7A01G403800 chr7D 93.889 180 9 2 2262 2439 511934285 511934464 1.320000e-68 270
5 TraesCS7A01G403800 chr7D 85.366 205 19 10 2064 2258 26336387 26336590 4.870000e-48 202
6 TraesCS7A01G403800 chr7B 95.502 1045 35 1 839 1883 541230578 541229546 0.000000e+00 1659
7 TraesCS7A01G403800 chr7B 94.275 262 12 3 2441 2699 598296147 598296408 5.790000e-107 398
8 TraesCS7A01G403800 chr2A 90.931 849 72 4 5 848 759649141 759648293 0.000000e+00 1136
9 TraesCS7A01G403800 chr2A 92.715 151 9 2 2064 2213 575349250 575349101 1.740000e-52 217
10 TraesCS7A01G403800 chr5D 91.565 818 59 7 26 838 159652693 159653505 0.000000e+00 1120
11 TraesCS7A01G403800 chr5D 92.208 154 10 2 2064 2216 480467511 480467359 1.740000e-52 217
12 TraesCS7A01G403800 chr5D 92.157 153 8 3 2064 2213 70677813 70677964 2.250000e-51 213
13 TraesCS7A01G403800 chr5A 90.725 841 75 2 1 839 670016832 670015993 0.000000e+00 1118
14 TraesCS7A01G403800 chr3A 91.422 816 65 2 26 839 534371775 534370963 0.000000e+00 1114
15 TraesCS7A01G403800 chr3A 91.727 278 20 3 2434 2708 424088811 424089088 1.620000e-102 383
16 TraesCS7A01G403800 chr3A 97.500 80 2 0 2806 2885 522181304 522181383 1.390000e-28 137
17 TraesCS7A01G403800 chr3A 95.294 85 3 1 2801 2885 154641367 154641450 1.800000e-27 134
18 TraesCS7A01G403800 chr3B 90.887 834 69 4 7 838 827103691 827104519 0.000000e+00 1112
19 TraesCS7A01G403800 chr3B 90.767 834 70 4 7 838 827648939 827649767 0.000000e+00 1107
20 TraesCS7A01G403800 chr3B 90.273 843 71 8 7 844 215113969 215114805 0.000000e+00 1092
21 TraesCS7A01G403800 chr3B 97.531 81 2 0 2805 2885 692220560 692220640 3.880000e-29 139
22 TraesCS7A01G403800 chr3B 93.333 90 5 1 2796 2885 809630625 809630537 6.490000e-27 132
23 TraesCS7A01G403800 chr3B 86.207 116 12 4 2771 2885 598118696 598118584 3.900000e-24 122
24 TraesCS7A01G403800 chr3D 91.076 818 67 5 26 838 473710530 473709714 0.000000e+00 1101
25 TraesCS7A01G403800 chr2B 78.277 824 126 27 1083 1884 110091493 110090701 5.590000e-132 481
26 TraesCS7A01G403800 chr2B 93.633 267 14 3 2437 2700 166592113 166592379 2.080000e-106 396
27 TraesCS7A01G403800 chr2B 93.333 270 13 5 2441 2706 206287179 206286911 7.490000e-106 394
28 TraesCS7A01G403800 chr2B 92.715 151 8 3 2064 2213 542919931 542919783 6.260000e-52 215
29 TraesCS7A01G403800 chr2B 92.157 153 9 3 2064 2214 764501569 764501720 2.250000e-51 213
30 TraesCS7A01G403800 chr2B 83.654 208 24 4 2064 2262 278906218 278906424 1.360000e-43 187
31 TraesCS7A01G403800 chr2D 78.825 647 104 17 1228 1860 72782715 72782088 3.460000e-109 405
32 TraesCS7A01G403800 chr2D 94.275 262 12 3 2440 2698 14087579 14087318 5.790000e-107 398
33 TraesCS7A01G403800 chr2D 93.536 263 15 2 2438 2698 37526876 37526614 9.690000e-105 390
34 TraesCS7A01G403800 chr5B 93.962 265 13 3 2440 2701 105778916 105778652 5.790000e-107 398
35 TraesCS7A01G403800 chr1D 94.275 262 12 3 2440 2698 76970951 76971212 5.790000e-107 398
36 TraesCS7A01G403800 chr6D 92.910 268 17 2 2434 2699 426200707 426200974 3.490000e-104 388
37 TraesCS7A01G403800 chr4D 88.587 184 12 3 2038 2213 451164201 451164383 6.260000e-52 215
38 TraesCS7A01G403800 chr4A 87.079 178 19 4 2038 2213 621429996 621430171 6.310000e-47 198
39 TraesCS7A01G403800 chr1A 98.701 77 1 0 2809 2885 501843082 501843006 1.390000e-28 137
40 TraesCS7A01G403800 chr6A 94.253 87 4 1 2799 2885 437582958 437583043 6.490000e-27 132
41 TraesCS7A01G403800 chr1B 93.333 90 4 2 2797 2885 650050117 650050029 6.490000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G403800 chr7A 584379133 584382017 2884 False 5328.0 5328 100.0000 1 2885 1 chr7A.!!$F2 2884
1 TraesCS7A01G403800 chr7A 511544270 511545093 823 False 1099.0 1099 90.7340 11 838 1 chr7A.!!$F1 827
2 TraesCS7A01G403800 chr7D 511933070 511934464 1394 False 1047.5 1825 93.9455 839 2439 2 chr7D.!!$F2 1600
3 TraesCS7A01G403800 chr7B 541229546 541230578 1032 True 1659.0 1659 95.5020 839 1883 1 chr7B.!!$R1 1044
4 TraesCS7A01G403800 chr2A 759648293 759649141 848 True 1136.0 1136 90.9310 5 848 1 chr2A.!!$R2 843
5 TraesCS7A01G403800 chr5D 159652693 159653505 812 False 1120.0 1120 91.5650 26 838 1 chr5D.!!$F2 812
6 TraesCS7A01G403800 chr5A 670015993 670016832 839 True 1118.0 1118 90.7250 1 839 1 chr5A.!!$R1 838
7 TraesCS7A01G403800 chr3A 534370963 534371775 812 True 1114.0 1114 91.4220 26 839 1 chr3A.!!$R1 813
8 TraesCS7A01G403800 chr3B 827103691 827104519 828 False 1112.0 1112 90.8870 7 838 1 chr3B.!!$F3 831
9 TraesCS7A01G403800 chr3B 827648939 827649767 828 False 1107.0 1107 90.7670 7 838 1 chr3B.!!$F4 831
10 TraesCS7A01G403800 chr3B 215113969 215114805 836 False 1092.0 1092 90.2730 7 844 1 chr3B.!!$F1 837
11 TraesCS7A01G403800 chr3D 473709714 473710530 816 True 1101.0 1101 91.0760 26 838 1 chr3D.!!$R1 812
12 TraesCS7A01G403800 chr2B 110090701 110091493 792 True 481.0 481 78.2770 1083 1884 1 chr2B.!!$R1 801
13 TraesCS7A01G403800 chr2D 72782088 72782715 627 True 405.0 405 78.8250 1228 1860 1 chr2D.!!$R3 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.176680 ATCGTCACCTCCTGCATCAC 59.823 55.0 0.0 0.0 0.00 3.06 F
319 323 0.806102 CTTACCGACCGCAGTCCATG 60.806 60.0 0.0 0.0 40.12 3.66 F
1392 1407 0.966920 GGACCTTCTCCTTCGACACA 59.033 55.0 0.0 0.0 35.89 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1361 1.068588 CAGATTCGTCGGCCCAATAGA 59.931 52.381 0.00 0.0 0.00 1.98 R
1819 1852 1.202545 TCGATTGAACACGTTGGGACA 60.203 47.619 0.00 0.0 0.00 4.02 R
2807 2865 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.0 46.06 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.109547 CAGCCTTGTCGCGCGTAA 61.110 61.111 30.98 23.32 0.00 3.18
22 23 3.110178 AGCCTTGTCGCGCGTAAC 61.110 61.111 30.98 21.96 0.00 2.50
24 25 3.484547 CCTTGTCGCGCGTAACCC 61.485 66.667 30.98 13.71 0.00 4.11
44 45 2.895372 GTACGCCAATCCTGCCGG 60.895 66.667 0.00 0.00 0.00 6.13
48 49 3.140814 GCCAATCCTGCCGGAACC 61.141 66.667 5.05 0.00 44.02 3.62
49 50 2.354729 CCAATCCTGCCGGAACCA 59.645 61.111 5.05 0.00 44.02 3.67
53 54 1.910580 AATCCTGCCGGAACCATCGT 61.911 55.000 5.05 0.00 44.02 3.73
60 61 1.153628 CGGAACCATCGTCACCTCC 60.154 63.158 0.00 0.00 0.00 4.30
68 69 0.176680 ATCGTCACCTCCTGCATCAC 59.823 55.000 0.00 0.00 0.00 3.06
122 125 3.782443 GCCGACCCAATCCGTCCT 61.782 66.667 0.00 0.00 0.00 3.85
132 135 2.882761 CCAATCCGTCCTCAGTATCGTA 59.117 50.000 0.00 0.00 0.00 3.43
134 137 1.575244 TCCGTCCTCAGTATCGTACG 58.425 55.000 9.53 9.53 0.00 3.67
156 159 0.881159 CGCCCTTGTACAACACCGAA 60.881 55.000 3.59 0.00 0.00 4.30
201 205 0.887836 CCGATCTATCCGGTCGTCCA 60.888 60.000 0.00 0.00 41.91 4.02
231 235 2.792599 GTCGGTCTGATCGCGAGT 59.207 61.111 16.66 2.41 0.00 4.18
242 246 4.847516 CGCGAGTCGAATCCGCCA 62.848 66.667 18.61 0.00 45.39 5.69
246 250 1.218316 GAGTCGAATCCGCCACCTT 59.782 57.895 0.28 0.00 35.37 3.50
290 294 2.740826 CGGTCCAATCGCCACGTT 60.741 61.111 0.00 0.00 0.00 3.99
314 318 1.814527 GATCCTTACCGACCGCAGT 59.185 57.895 0.00 0.00 0.00 4.40
319 323 0.806102 CTTACCGACCGCAGTCCATG 60.806 60.000 0.00 0.00 40.12 3.66
323 327 1.153369 CGACCGCAGTCCATGGAAT 60.153 57.895 18.20 13.77 40.12 3.01
387 391 4.197498 GCAATCGCCGCCATGCTT 62.197 61.111 2.15 0.00 35.93 3.91
564 568 7.414098 GCATGATATTTGTTAACGAGGTTCACT 60.414 37.037 0.00 0.00 0.00 3.41
600 604 4.157120 GGGCATGACTACGGGCGT 62.157 66.667 0.00 0.00 0.00 5.68
733 743 4.571362 CCCCTCCGTATATAAGAGGCCTAA 60.571 50.000 18.71 0.00 44.95 2.69
777 787 4.202284 ACACAACTCGTACCTAACCACATT 60.202 41.667 0.00 0.00 0.00 2.71
783 793 9.321562 CAACTCGTACCTAACCACATTAATTAT 57.678 33.333 0.00 0.00 0.00 1.28
822 834 6.203338 CGTAACCCCTTGCGTACATAATATTT 59.797 38.462 0.00 0.00 31.47 1.40
849 861 6.158695 ACACAAATATAACAGACTGGGAGGAT 59.841 38.462 7.51 0.00 0.00 3.24
904 916 1.357334 GACTCCGACTCCGATGAGC 59.643 63.158 0.00 0.00 42.74 4.26
1324 1339 2.113139 CCTTGCACCCAGACGGTT 59.887 61.111 0.00 0.00 45.36 4.44
1346 1361 3.908081 ACTGTTCGTGTCCGCCGT 61.908 61.111 0.00 0.00 0.00 5.68
1392 1407 0.966920 GGACCTTCTCCTTCGACACA 59.033 55.000 0.00 0.00 35.89 3.72
1467 1482 1.427020 GTACTACGTCGCCGAGCTT 59.573 57.895 0.00 0.00 37.88 3.74
1781 1814 1.500512 TTTGGTGTCAAGTACGGCGC 61.501 55.000 6.90 0.00 33.98 6.53
1836 1869 0.951558 GCTGTCCCAACGTGTTCAAT 59.048 50.000 0.00 0.00 0.00 2.57
1884 1923 1.949525 CCCGTGGCATTCTGGATTTAG 59.050 52.381 0.00 0.00 0.00 1.85
1885 1924 2.643551 CCGTGGCATTCTGGATTTAGT 58.356 47.619 0.00 0.00 0.00 2.24
1886 1925 3.016736 CCGTGGCATTCTGGATTTAGTT 58.983 45.455 0.00 0.00 0.00 2.24
1964 2018 1.153369 CCGTAGTGCTCCACCCATG 60.153 63.158 0.00 0.00 34.49 3.66
1981 2035 3.705579 CCCATGGAATTAATCTTGTGGCA 59.294 43.478 15.22 0.00 0.00 4.92
1982 2036 4.161942 CCCATGGAATTAATCTTGTGGCAA 59.838 41.667 15.22 0.00 0.00 4.52
2042 2098 8.748380 TCATTATTAGAGTTCATGCATACTCG 57.252 34.615 19.25 7.63 44.26 4.18
2043 2099 7.329471 TCATTATTAGAGTTCATGCATACTCGC 59.671 37.037 19.25 6.82 44.26 5.03
2044 2100 4.655762 TTAGAGTTCATGCATACTCGCT 57.344 40.909 19.25 12.45 44.26 4.93
2045 2101 3.090952 AGAGTTCATGCATACTCGCTC 57.909 47.619 19.25 13.16 44.26 5.03
2046 2102 2.131183 GAGTTCATGCATACTCGCTCC 58.869 52.381 12.65 0.00 32.31 4.70
2047 2103 1.759445 AGTTCATGCATACTCGCTCCT 59.241 47.619 0.00 0.00 0.00 3.69
2048 2104 2.169352 AGTTCATGCATACTCGCTCCTT 59.831 45.455 0.00 0.00 0.00 3.36
2049 2105 2.939103 GTTCATGCATACTCGCTCCTTT 59.061 45.455 0.00 0.00 0.00 3.11
2050 2106 2.826428 TCATGCATACTCGCTCCTTTC 58.174 47.619 0.00 0.00 0.00 2.62
2051 2107 2.432146 TCATGCATACTCGCTCCTTTCT 59.568 45.455 0.00 0.00 0.00 2.52
2052 2108 3.118629 TCATGCATACTCGCTCCTTTCTT 60.119 43.478 0.00 0.00 0.00 2.52
2053 2109 2.621338 TGCATACTCGCTCCTTTCTTG 58.379 47.619 0.00 0.00 0.00 3.02
2054 2110 2.233676 TGCATACTCGCTCCTTTCTTGA 59.766 45.455 0.00 0.00 0.00 3.02
2055 2111 3.262420 GCATACTCGCTCCTTTCTTGAA 58.738 45.455 0.00 0.00 0.00 2.69
2056 2112 3.684788 GCATACTCGCTCCTTTCTTGAAA 59.315 43.478 0.00 0.00 0.00 2.69
2057 2113 4.201763 GCATACTCGCTCCTTTCTTGAAAG 60.202 45.833 14.26 14.26 0.00 2.62
2058 2114 3.753294 ACTCGCTCCTTTCTTGAAAGA 57.247 42.857 20.76 0.00 31.58 2.52
2059 2115 3.658709 ACTCGCTCCTTTCTTGAAAGAG 58.341 45.455 20.76 16.43 36.22 2.85
2060 2116 3.070302 ACTCGCTCCTTTCTTGAAAGAGT 59.930 43.478 20.76 14.01 36.22 3.24
2061 2117 3.393800 TCGCTCCTTTCTTGAAAGAGTG 58.606 45.455 20.76 19.49 36.22 3.51
2062 2118 3.134458 CGCTCCTTTCTTGAAAGAGTGT 58.866 45.455 20.76 0.00 36.22 3.55
2063 2119 4.038763 TCGCTCCTTTCTTGAAAGAGTGTA 59.961 41.667 20.76 11.27 36.22 2.90
2064 2120 4.150804 CGCTCCTTTCTTGAAAGAGTGTAC 59.849 45.833 20.76 6.58 36.22 2.90
2065 2121 5.301555 GCTCCTTTCTTGAAAGAGTGTACT 58.698 41.667 20.76 0.00 36.22 2.73
2066 2122 5.760743 GCTCCTTTCTTGAAAGAGTGTACTT 59.239 40.000 20.76 0.00 36.22 2.24
2067 2123 6.261158 GCTCCTTTCTTGAAAGAGTGTACTTT 59.739 38.462 20.76 0.00 41.86 2.66
2068 2124 7.553881 TCCTTTCTTGAAAGAGTGTACTTTG 57.446 36.000 20.76 4.25 39.71 2.77
2069 2125 7.110155 TCCTTTCTTGAAAGAGTGTACTTTGT 58.890 34.615 20.76 0.00 39.71 2.83
2070 2126 7.610305 TCCTTTCTTGAAAGAGTGTACTTTGTT 59.390 33.333 20.76 0.00 39.71 2.83
2071 2127 7.698130 CCTTTCTTGAAAGAGTGTACTTTGTTG 59.302 37.037 20.76 0.05 39.71 3.33
2072 2128 6.677781 TCTTGAAAGAGTGTACTTTGTTGG 57.322 37.500 0.00 0.00 39.71 3.77
2073 2129 6.411376 TCTTGAAAGAGTGTACTTTGTTGGA 58.589 36.000 0.00 0.00 39.71 3.53
2074 2130 6.882140 TCTTGAAAGAGTGTACTTTGTTGGAA 59.118 34.615 0.00 0.00 39.71 3.53
2075 2131 7.392113 TCTTGAAAGAGTGTACTTTGTTGGAAA 59.608 33.333 0.00 0.00 39.71 3.13
2076 2132 7.083875 TGAAAGAGTGTACTTTGTTGGAAAG 57.916 36.000 0.00 0.00 39.71 2.62
2077 2133 6.657541 TGAAAGAGTGTACTTTGTTGGAAAGT 59.342 34.615 5.24 5.24 42.53 2.66
2078 2134 6.679327 AAGAGTGTACTTTGTTGGAAAGTC 57.321 37.500 3.15 0.00 40.58 3.01
2079 2135 5.741011 AGAGTGTACTTTGTTGGAAAGTCA 58.259 37.500 3.15 0.69 40.58 3.41
2080 2136 6.177610 AGAGTGTACTTTGTTGGAAAGTCAA 58.822 36.000 3.15 0.00 40.58 3.18
2081 2137 6.828785 AGAGTGTACTTTGTTGGAAAGTCAAT 59.171 34.615 3.15 2.41 40.58 2.57
2082 2138 7.339466 AGAGTGTACTTTGTTGGAAAGTCAATT 59.661 33.333 3.15 0.00 40.58 2.32
2083 2139 7.836842 AGTGTACTTTGTTGGAAAGTCAATTT 58.163 30.769 3.15 0.00 40.58 1.82
2084 2140 8.311109 AGTGTACTTTGTTGGAAAGTCAATTTT 58.689 29.630 3.15 0.00 40.58 1.82
2085 2141 8.931775 GTGTACTTTGTTGGAAAGTCAATTTTT 58.068 29.630 3.15 0.00 40.58 1.94
2119 2175 9.439500 TTGGCCGTATTTATACAATAATAGACC 57.561 33.333 0.00 0.00 32.87 3.85
2120 2176 8.595421 TGGCCGTATTTATACAATAATAGACCA 58.405 33.333 0.00 0.00 32.87 4.02
2121 2177 9.439500 GGCCGTATTTATACAATAATAGACCAA 57.561 33.333 0.00 0.00 32.87 3.67
2151 2207 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
2152 2208 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
2153 2209 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
2154 2210 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
2155 2211 8.786898 GCCATCAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
2202 2258 8.757982 ATACCTATCTGATTTCACAAAGCATT 57.242 30.769 0.00 0.00 36.06 3.56
2203 2259 6.860080 ACCTATCTGATTTCACAAAGCATTG 58.140 36.000 0.00 0.00 42.46 2.82
2204 2260 6.660521 ACCTATCTGATTTCACAAAGCATTGA 59.339 34.615 8.96 0.00 38.94 2.57
2205 2261 7.148120 ACCTATCTGATTTCACAAAGCATTGAG 60.148 37.037 8.96 0.06 38.94 3.02
2206 2262 6.829229 ATCTGATTTCACAAAGCATTGAGA 57.171 33.333 8.96 2.90 38.94 3.27
2207 2263 6.829229 TCTGATTTCACAAAGCATTGAGAT 57.171 33.333 8.96 0.00 38.94 2.75
2208 2264 7.926674 TCTGATTTCACAAAGCATTGAGATA 57.073 32.000 8.96 1.73 38.94 1.98
2209 2265 8.339344 TCTGATTTCACAAAGCATTGAGATAA 57.661 30.769 8.96 4.38 38.94 1.75
2210 2266 8.963725 TCTGATTTCACAAAGCATTGAGATAAT 58.036 29.630 8.96 8.46 38.94 1.28
2211 2267 9.582431 CTGATTTCACAAAGCATTGAGATAATT 57.418 29.630 8.96 0.00 38.94 1.40
2212 2268 9.932207 TGATTTCACAAAGCATTGAGATAATTT 57.068 25.926 8.96 0.00 38.94 1.82
2214 2270 9.932207 ATTTCACAAAGCATTGAGATAATTTGA 57.068 25.926 8.96 0.00 38.94 2.69
2215 2271 8.746922 TTCACAAAGCATTGAGATAATTTGAC 57.253 30.769 8.96 0.00 38.94 3.18
2216 2272 7.315142 TCACAAAGCATTGAGATAATTTGACC 58.685 34.615 8.96 0.00 38.94 4.02
2217 2273 6.532657 CACAAAGCATTGAGATAATTTGACCC 59.467 38.462 8.96 0.00 38.94 4.46
2218 2274 6.438425 ACAAAGCATTGAGATAATTTGACCCT 59.562 34.615 8.96 0.00 38.94 4.34
2219 2275 6.705863 AAGCATTGAGATAATTTGACCCTC 57.294 37.500 0.00 0.00 0.00 4.30
2220 2276 6.011122 AGCATTGAGATAATTTGACCCTCT 57.989 37.500 0.00 0.00 0.00 3.69
2221 2277 7.141758 AGCATTGAGATAATTTGACCCTCTA 57.858 36.000 0.00 0.00 0.00 2.43
2222 2278 7.577303 AGCATTGAGATAATTTGACCCTCTAA 58.423 34.615 0.00 0.00 0.00 2.10
2223 2279 8.223330 AGCATTGAGATAATTTGACCCTCTAAT 58.777 33.333 0.00 0.00 0.00 1.73
2224 2280 9.507329 GCATTGAGATAATTTGACCCTCTAATA 57.493 33.333 0.00 0.00 0.00 0.98
2235 2291 9.875691 ATTTGACCCTCTAATAAAATTGAAAGC 57.124 29.630 0.00 0.00 0.00 3.51
2236 2292 8.415950 TTGACCCTCTAATAAAATTGAAAGCA 57.584 30.769 0.00 0.00 0.00 3.91
2237 2293 7.826690 TGACCCTCTAATAAAATTGAAAGCAC 58.173 34.615 0.00 0.00 0.00 4.40
2238 2294 7.450014 TGACCCTCTAATAAAATTGAAAGCACA 59.550 33.333 0.00 0.00 0.00 4.57
2239 2295 7.602753 ACCCTCTAATAAAATTGAAAGCACAC 58.397 34.615 0.00 0.00 0.00 3.82
2240 2296 7.451566 ACCCTCTAATAAAATTGAAAGCACACT 59.548 33.333 0.00 0.00 0.00 3.55
2241 2297 8.956426 CCCTCTAATAAAATTGAAAGCACACTA 58.044 33.333 0.00 0.00 0.00 2.74
2252 2308 6.258230 TGAAAGCACACTATTTCAAGATGG 57.742 37.500 0.00 0.00 41.23 3.51
2253 2309 6.003326 TGAAAGCACACTATTTCAAGATGGA 58.997 36.000 0.00 0.00 41.23 3.41
2254 2310 6.149973 TGAAAGCACACTATTTCAAGATGGAG 59.850 38.462 0.00 0.00 41.23 3.86
2255 2311 4.521146 AGCACACTATTTCAAGATGGAGG 58.479 43.478 0.00 0.00 0.00 4.30
2256 2312 3.629398 GCACACTATTTCAAGATGGAGGG 59.371 47.826 0.00 0.00 0.00 4.30
2257 2313 4.626287 GCACACTATTTCAAGATGGAGGGA 60.626 45.833 0.00 0.00 0.00 4.20
2258 2314 4.878397 CACACTATTTCAAGATGGAGGGAC 59.122 45.833 0.00 0.00 0.00 4.46
2260 2316 5.964477 ACACTATTTCAAGATGGAGGGACTA 59.036 40.000 0.00 0.00 41.55 2.59
2317 2373 7.440523 AATTGCAAGTACTTAGAACTTCTGG 57.559 36.000 8.04 0.00 34.99 3.86
2322 2379 7.602644 TGCAAGTACTTAGAACTTCTGGTATTG 59.397 37.037 8.04 10.58 34.99 1.90
2375 2432 4.797868 CAGACAAAGTGAAAAATTGCACGA 59.202 37.500 0.00 0.00 39.88 4.35
2384 2441 6.747280 AGTGAAAAATTGCACGATAATGCTAC 59.253 34.615 0.00 0.00 46.28 3.58
2396 2453 2.796483 AATGCTACGCACCGGCAAGA 62.796 55.000 0.00 0.00 43.04 3.02
2447 2505 5.359194 CACCTATGTGTCAAATACTCCCT 57.641 43.478 0.00 0.00 37.72 4.20
2448 2506 5.360591 CACCTATGTGTCAAATACTCCCTC 58.639 45.833 0.00 0.00 37.72 4.30
2449 2507 5.129485 CACCTATGTGTCAAATACTCCCTCT 59.871 44.000 0.00 0.00 37.72 3.69
2450 2508 5.129485 ACCTATGTGTCAAATACTCCCTCTG 59.871 44.000 0.00 0.00 0.00 3.35
2451 2509 5.129485 CCTATGTGTCAAATACTCCCTCTGT 59.871 44.000 0.00 0.00 0.00 3.41
2452 2510 4.974645 TGTGTCAAATACTCCCTCTGTT 57.025 40.909 0.00 0.00 0.00 3.16
2453 2511 5.304686 TGTGTCAAATACTCCCTCTGTTT 57.695 39.130 0.00 0.00 0.00 2.83
2454 2512 5.690865 TGTGTCAAATACTCCCTCTGTTTT 58.309 37.500 0.00 0.00 0.00 2.43
2455 2513 6.126409 TGTGTCAAATACTCCCTCTGTTTTT 58.874 36.000 0.00 0.00 0.00 1.94
2481 2539 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
2482 2540 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
2483 2541 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
2484 2542 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
2485 2543 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
2486 2544 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
2487 2545 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
2488 2546 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
2489 2547 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
2490 2548 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
2675 2733 9.617523 TGACTTTGATCAAATCTTATATGCAGA 57.382 29.630 20.76 0.00 0.00 4.26
2676 2734 9.875675 GACTTTGATCAAATCTTATATGCAGAC 57.124 33.333 20.76 2.27 0.00 3.51
2677 2735 9.624373 ACTTTGATCAAATCTTATATGCAGACT 57.376 29.630 20.76 0.00 0.00 3.24
2689 2747 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
2690 2748 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
2691 2749 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
2692 2750 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
2693 2751 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
2694 2752 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
2695 2753 4.691216 CAGACTAAAAAGAAACGGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
2696 2754 4.347292 AGACTAAAAAGAAACGGAGGGAGT 59.653 41.667 0.00 0.00 0.00 3.85
2697 2755 5.541484 AGACTAAAAAGAAACGGAGGGAGTA 59.459 40.000 0.00 0.00 0.00 2.59
2698 2756 6.212993 AGACTAAAAAGAAACGGAGGGAGTAT 59.787 38.462 0.00 0.00 0.00 2.12
2699 2757 6.404708 ACTAAAAAGAAACGGAGGGAGTATC 58.595 40.000 0.00 0.00 0.00 2.24
2700 2758 5.500546 AAAAAGAAACGGAGGGAGTATCT 57.499 39.130 0.00 0.00 33.73 1.98
2701 2759 5.500546 AAAAGAAACGGAGGGAGTATCTT 57.499 39.130 0.00 0.00 33.73 2.40
2702 2760 5.500546 AAAGAAACGGAGGGAGTATCTTT 57.499 39.130 0.00 0.00 32.47 2.52
2703 2761 5.500546 AAGAAACGGAGGGAGTATCTTTT 57.499 39.130 0.00 0.00 33.73 2.27
2704 2762 4.833390 AGAAACGGAGGGAGTATCTTTTG 58.167 43.478 0.00 0.00 33.73 2.44
2705 2763 4.286291 AGAAACGGAGGGAGTATCTTTTGT 59.714 41.667 0.00 0.00 33.73 2.83
2706 2764 5.482878 AGAAACGGAGGGAGTATCTTTTGTA 59.517 40.000 0.00 0.00 33.73 2.41
2707 2765 5.952347 AACGGAGGGAGTATCTTTTGTAT 57.048 39.130 0.00 0.00 33.73 2.29
2708 2766 5.952347 ACGGAGGGAGTATCTTTTGTATT 57.048 39.130 0.00 0.00 33.73 1.89
2709 2767 5.671493 ACGGAGGGAGTATCTTTTGTATTG 58.329 41.667 0.00 0.00 33.73 1.90
2710 2768 4.511826 CGGAGGGAGTATCTTTTGTATTGC 59.488 45.833 0.00 0.00 33.73 3.56
2711 2769 5.437060 GGAGGGAGTATCTTTTGTATTGCA 58.563 41.667 0.00 0.00 33.73 4.08
2712 2770 5.885912 GGAGGGAGTATCTTTTGTATTGCAA 59.114 40.000 0.00 0.00 33.73 4.08
2713 2771 6.547510 GGAGGGAGTATCTTTTGTATTGCAAT 59.452 38.462 17.56 17.56 33.94 3.56
2714 2772 7.068716 GGAGGGAGTATCTTTTGTATTGCAATT 59.931 37.037 18.75 1.81 33.94 2.32
2715 2773 8.000780 AGGGAGTATCTTTTGTATTGCAATTC 57.999 34.615 18.75 13.39 33.94 2.17
2716 2774 7.836183 AGGGAGTATCTTTTGTATTGCAATTCT 59.164 33.333 18.75 0.00 33.94 2.40
2717 2775 8.470002 GGGAGTATCTTTTGTATTGCAATTCTT 58.530 33.333 18.75 0.00 33.94 2.52
2718 2776 9.860898 GGAGTATCTTTTGTATTGCAATTCTTT 57.139 29.630 18.75 0.00 33.94 2.52
2723 2781 9.635520 ATCTTTTGTATTGCAATTCTTTCTCTG 57.364 29.630 18.75 1.04 36.89 3.35
2724 2782 8.849168 TCTTTTGTATTGCAATTCTTTCTCTGA 58.151 29.630 18.75 3.32 36.89 3.27
2725 2783 9.635520 CTTTTGTATTGCAATTCTTTCTCTGAT 57.364 29.630 18.75 0.00 36.89 2.90
2726 2784 9.985730 TTTTGTATTGCAATTCTTTCTCTGATT 57.014 25.926 18.75 0.00 36.89 2.57
2727 2785 9.985730 TTTGTATTGCAATTCTTTCTCTGATTT 57.014 25.926 18.75 0.00 36.89 2.17
2728 2786 9.630098 TTGTATTGCAATTCTTTCTCTGATTTC 57.370 29.630 18.75 0.00 31.07 2.17
2729 2787 9.017509 TGTATTGCAATTCTTTCTCTGATTTCT 57.982 29.630 18.75 0.00 0.00 2.52
2730 2788 9.500864 GTATTGCAATTCTTTCTCTGATTTCTC 57.499 33.333 18.75 0.00 0.00 2.87
2731 2789 7.514784 TTGCAATTCTTTCTCTGATTTCTCA 57.485 32.000 0.00 0.00 0.00 3.27
2732 2790 7.698506 TGCAATTCTTTCTCTGATTTCTCAT 57.301 32.000 0.00 0.00 0.00 2.90
2733 2791 8.118976 TGCAATTCTTTCTCTGATTTCTCATT 57.881 30.769 0.00 0.00 0.00 2.57
2734 2792 8.582437 TGCAATTCTTTCTCTGATTTCTCATTT 58.418 29.630 0.00 0.00 0.00 2.32
2735 2793 9.420551 GCAATTCTTTCTCTGATTTCTCATTTT 57.579 29.630 0.00 0.00 0.00 1.82
2737 2795 9.837525 AATTCTTTCTCTGATTTCTCATTTTCG 57.162 29.630 0.00 0.00 0.00 3.46
2738 2796 7.969536 TCTTTCTCTGATTTCTCATTTTCGT 57.030 32.000 0.00 0.00 0.00 3.85
2739 2797 9.489084 TTCTTTCTCTGATTTCTCATTTTCGTA 57.511 29.630 0.00 0.00 0.00 3.43
2740 2798 9.658799 TCTTTCTCTGATTTCTCATTTTCGTAT 57.341 29.630 0.00 0.00 0.00 3.06
2744 2802 9.219603 TCTCTGATTTCTCATTTTCGTATTTGT 57.780 29.630 0.00 0.00 0.00 2.83
2745 2803 9.270576 CTCTGATTTCTCATTTTCGTATTTGTG 57.729 33.333 0.00 0.00 0.00 3.33
2746 2804 7.750458 TCTGATTTCTCATTTTCGTATTTGTGC 59.250 33.333 0.00 0.00 0.00 4.57
2747 2805 7.592938 TGATTTCTCATTTTCGTATTTGTGCT 58.407 30.769 0.00 0.00 0.00 4.40
2748 2806 7.750458 TGATTTCTCATTTTCGTATTTGTGCTC 59.250 33.333 0.00 0.00 0.00 4.26
2749 2807 6.801539 TTCTCATTTTCGTATTTGTGCTCT 57.198 33.333 0.00 0.00 0.00 4.09
2750 2808 6.408858 TCTCATTTTCGTATTTGTGCTCTC 57.591 37.500 0.00 0.00 0.00 3.20
2751 2809 6.166279 TCTCATTTTCGTATTTGTGCTCTCT 58.834 36.000 0.00 0.00 0.00 3.10
2752 2810 6.311445 TCTCATTTTCGTATTTGTGCTCTCTC 59.689 38.462 0.00 0.00 0.00 3.20
2753 2811 6.166279 TCATTTTCGTATTTGTGCTCTCTCT 58.834 36.000 0.00 0.00 0.00 3.10
2754 2812 6.311445 TCATTTTCGTATTTGTGCTCTCTCTC 59.689 38.462 0.00 0.00 0.00 3.20
2755 2813 5.392767 TTTCGTATTTGTGCTCTCTCTCT 57.607 39.130 0.00 0.00 0.00 3.10
2756 2814 4.624336 TCGTATTTGTGCTCTCTCTCTC 57.376 45.455 0.00 0.00 0.00 3.20
2757 2815 4.265893 TCGTATTTGTGCTCTCTCTCTCT 58.734 43.478 0.00 0.00 0.00 3.10
2758 2816 4.334203 TCGTATTTGTGCTCTCTCTCTCTC 59.666 45.833 0.00 0.00 0.00 3.20
2759 2817 4.335315 CGTATTTGTGCTCTCTCTCTCTCT 59.665 45.833 0.00 0.00 0.00 3.10
2760 2818 4.989279 ATTTGTGCTCTCTCTCTCTCTC 57.011 45.455 0.00 0.00 0.00 3.20
2761 2819 3.719268 TTGTGCTCTCTCTCTCTCTCT 57.281 47.619 0.00 0.00 0.00 3.10
2762 2820 3.266510 TGTGCTCTCTCTCTCTCTCTC 57.733 52.381 0.00 0.00 0.00 3.20
2763 2821 2.840038 TGTGCTCTCTCTCTCTCTCTCT 59.160 50.000 0.00 0.00 0.00 3.10
2764 2822 3.118629 TGTGCTCTCTCTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
2765 2823 3.133721 GTGCTCTCTCTCTCTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
2766 2824 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
2767 2825 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
2768 2826 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
2769 2827 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2770 2828 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2771 2829 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2772 2830 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2773 2831 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2774 2832 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2775 2833 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2776 2834 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2777 2835 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2778 2836 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2779 2837 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2780 2838 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2781 2839 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2782 2840 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2783 2841 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2784 2842 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2785 2843 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2786 2844 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2787 2845 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2788 2846 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
2789 2847 5.362143 TCTCTCTCTCTCTCTCTCTCTCTTG 59.638 48.000 0.00 0.00 0.00 3.02
2790 2848 4.125703 CTCTCTCTCTCTCTCTCTCTTGC 58.874 52.174 0.00 0.00 0.00 4.01
2791 2849 3.519107 TCTCTCTCTCTCTCTCTCTTGCA 59.481 47.826 0.00 0.00 0.00 4.08
2792 2850 3.875727 CTCTCTCTCTCTCTCTCTTGCAG 59.124 52.174 0.00 0.00 0.00 4.41
2793 2851 3.264193 TCTCTCTCTCTCTCTCTTGCAGT 59.736 47.826 0.00 0.00 0.00 4.40
2794 2852 4.012374 CTCTCTCTCTCTCTCTTGCAGTT 58.988 47.826 0.00 0.00 0.00 3.16
2795 2853 3.758023 TCTCTCTCTCTCTCTTGCAGTTG 59.242 47.826 0.00 0.00 0.00 3.16
2796 2854 3.758023 CTCTCTCTCTCTCTTGCAGTTGA 59.242 47.826 0.00 0.00 0.00 3.18
2797 2855 3.505680 TCTCTCTCTCTCTTGCAGTTGAC 59.494 47.826 0.00 0.00 0.00 3.18
2798 2856 2.560542 TCTCTCTCTCTTGCAGTTGACC 59.439 50.000 0.00 0.00 0.00 4.02
2799 2857 1.620819 TCTCTCTCTTGCAGTTGACCC 59.379 52.381 0.00 0.00 0.00 4.46
2800 2858 1.622811 CTCTCTCTTGCAGTTGACCCT 59.377 52.381 0.00 0.00 0.00 4.34
2801 2859 2.828520 CTCTCTCTTGCAGTTGACCCTA 59.171 50.000 0.00 0.00 0.00 3.53
2802 2860 3.445008 TCTCTCTTGCAGTTGACCCTAT 58.555 45.455 0.00 0.00 0.00 2.57
2803 2861 3.449018 TCTCTCTTGCAGTTGACCCTATC 59.551 47.826 0.00 0.00 0.00 2.08
2804 2862 3.173151 TCTCTTGCAGTTGACCCTATCA 58.827 45.455 0.00 0.00 34.65 2.15
2805 2863 3.776969 TCTCTTGCAGTTGACCCTATCAT 59.223 43.478 0.00 0.00 37.11 2.45
2806 2864 4.225942 TCTCTTGCAGTTGACCCTATCATT 59.774 41.667 0.00 0.00 37.11 2.57
2807 2865 5.425217 TCTCTTGCAGTTGACCCTATCATTA 59.575 40.000 0.00 0.00 37.11 1.90
2808 2866 6.100279 TCTCTTGCAGTTGACCCTATCATTAT 59.900 38.462 0.00 0.00 37.11 1.28
2809 2867 7.290014 TCTCTTGCAGTTGACCCTATCATTATA 59.710 37.037 0.00 0.00 37.11 0.98
2810 2868 7.217200 TCTTGCAGTTGACCCTATCATTATAC 58.783 38.462 0.00 0.00 37.11 1.47
2811 2869 6.747414 TGCAGTTGACCCTATCATTATACT 57.253 37.500 0.00 0.00 37.11 2.12
2812 2870 6.759272 TGCAGTTGACCCTATCATTATACTC 58.241 40.000 0.00 0.00 37.11 2.59
2813 2871 6.166982 GCAGTTGACCCTATCATTATACTCC 58.833 44.000 0.00 0.00 37.11 3.85
2814 2872 6.702329 CAGTTGACCCTATCATTATACTCCC 58.298 44.000 0.00 0.00 37.11 4.30
2815 2873 6.498651 CAGTTGACCCTATCATTATACTCCCT 59.501 42.308 0.00 0.00 37.11 4.20
2816 2874 6.726764 AGTTGACCCTATCATTATACTCCCTC 59.273 42.308 0.00 0.00 37.11 4.30
2817 2875 5.590818 TGACCCTATCATTATACTCCCTCC 58.409 45.833 0.00 0.00 29.99 4.30
2818 2876 4.611367 ACCCTATCATTATACTCCCTCCG 58.389 47.826 0.00 0.00 0.00 4.63
2819 2877 4.045590 ACCCTATCATTATACTCCCTCCGT 59.954 45.833 0.00 0.00 0.00 4.69
2820 2878 4.645588 CCCTATCATTATACTCCCTCCGTC 59.354 50.000 0.00 0.00 0.00 4.79
2821 2879 4.645588 CCTATCATTATACTCCCTCCGTCC 59.354 50.000 0.00 0.00 0.00 4.79
2822 2880 2.511659 TCATTATACTCCCTCCGTCCG 58.488 52.381 0.00 0.00 0.00 4.79
2823 2881 1.544691 CATTATACTCCCTCCGTCCGG 59.455 57.143 0.00 0.00 0.00 5.14
2824 2882 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
2825 2883 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2826 2884 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2827 2885 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2828 2886 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2829 2887 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2830 2888 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2831 2889 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2832 2890 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2833 2891 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2834 2892 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2835 2893 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2836 2894 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2837 2895 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2838 2896 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2839 2897 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2840 2898 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2841 2899 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2842 2900 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2843 2901 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2844 2902 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2845 2903 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2846 2904 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2854 2912 9.918630 ACTTGTCATCAAAATGAATAAAAGGAG 57.081 29.630 0.00 0.00 43.42 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.789290 GGATTGGCGTACGGGGGT 61.789 66.667 18.39 0.00 0.00 4.95
22 23 3.476419 AGGATTGGCGTACGGGGG 61.476 66.667 18.39 0.00 0.00 5.40
24 25 2.895372 GCAGGATTGGCGTACGGG 60.895 66.667 18.39 0.00 0.00 5.28
44 45 0.741221 GCAGGAGGTGACGATGGTTC 60.741 60.000 0.00 0.00 0.00 3.62
48 49 0.176449 TGATGCAGGAGGTGACGATG 59.824 55.000 0.00 0.00 0.00 3.84
49 50 0.176680 GTGATGCAGGAGGTGACGAT 59.823 55.000 0.00 0.00 0.00 3.73
53 54 0.837691 ACAGGTGATGCAGGAGGTGA 60.838 55.000 0.00 0.00 0.00 4.02
111 114 1.681793 ACGATACTGAGGACGGATTGG 59.318 52.381 0.00 0.00 0.00 3.16
122 125 1.439353 GGGCGACCGTACGATACTGA 61.439 60.000 18.76 0.00 43.64 3.41
231 235 2.183300 CGAAGGTGGCGGATTCGA 59.817 61.111 0.00 0.00 46.57 3.71
240 244 0.878523 TGAAGACGTTGCGAAGGTGG 60.879 55.000 0.00 0.00 0.00 4.61
242 246 0.935196 GTTGAAGACGTTGCGAAGGT 59.065 50.000 0.00 0.00 0.00 3.50
246 250 1.495584 GGCTGTTGAAGACGTTGCGA 61.496 55.000 0.00 0.00 0.00 5.10
290 294 1.035139 GGTCGGTAAGGATCGGCTAA 58.965 55.000 0.00 0.00 33.08 3.09
319 323 2.003548 AGGAGGCCTGGACCATTCC 61.004 63.158 12.00 1.62 43.19 3.01
372 376 2.438254 TGAAGCATGGCGGCGATT 60.438 55.556 12.98 0.00 39.27 3.34
387 391 2.535485 ATCCGATTGGCGCAAGGTGA 62.535 55.000 10.83 0.00 39.11 4.02
491 495 9.123709 CTTGCATTAGCGTTTTATTCTAACAAA 57.876 29.630 0.00 0.00 46.23 2.83
541 545 7.156000 TCAGTGAACCTCGTTAACAAATATCA 58.844 34.615 6.39 1.72 29.69 2.15
564 568 1.275666 CCGGGGATGTAGCCATATCA 58.724 55.000 0.00 0.00 0.00 2.15
600 604 0.619255 TGCGGTATCTTGGGGAGGAA 60.619 55.000 0.00 0.00 0.00 3.36
664 668 4.159693 TGACGACTTGATAGCAACAGGTAT 59.840 41.667 0.00 0.00 0.00 2.73
733 743 3.088789 AGGAGTCGGACACTTGTATCT 57.911 47.619 11.27 0.00 34.41 1.98
783 793 6.018433 AGGGGTTACGTAGATTAGGAGTTA 57.982 41.667 0.00 0.00 0.00 2.24
790 800 2.760092 ACGCAAGGGGTTACGTAGATTA 59.240 45.455 0.00 0.00 46.39 1.75
792 802 1.188863 ACGCAAGGGGTTACGTAGAT 58.811 50.000 0.00 0.00 46.39 1.98
795 805 1.252175 TGTACGCAAGGGGTTACGTA 58.748 50.000 0.00 0.00 46.39 3.57
822 834 6.367374 TCCCAGTCTGTTATATTTGTGTCA 57.633 37.500 0.00 0.00 0.00 3.58
849 861 1.005037 CTTGTGGACGCTGTAGCCA 60.005 57.895 0.00 0.00 37.91 4.75
958 970 0.179169 GTGAGGAAGGCGTACGAGTC 60.179 60.000 21.65 11.84 0.00 3.36
1209 1224 2.746277 GGCTGGTGCGGTTGGTAG 60.746 66.667 0.00 0.00 40.82 3.18
1346 1361 1.068588 CAGATTCGTCGGCCCAATAGA 59.931 52.381 0.00 0.00 0.00 1.98
1392 1407 3.063084 GTCCACTCGAGGCGGTCT 61.063 66.667 18.41 0.00 0.00 3.85
1427 1442 2.189784 GGCCGAGGAAAGGTAGCC 59.810 66.667 0.00 0.00 0.00 3.93
1506 1521 3.695606 GAGGAGCAGACGTGGCCA 61.696 66.667 0.00 0.00 0.00 5.36
1513 1528 2.486042 GACGTCGGAGGAGCAGAC 59.514 66.667 0.00 0.00 38.20 3.51
1819 1852 1.202545 TCGATTGAACACGTTGGGACA 60.203 47.619 0.00 0.00 0.00 4.02
1884 1923 2.030007 TGCATGCTTCAAACTAGCCAAC 60.030 45.455 20.33 0.00 37.85 3.77
1885 1924 2.237643 TGCATGCTTCAAACTAGCCAA 58.762 42.857 20.33 0.00 37.85 4.52
1886 1925 1.908344 TGCATGCTTCAAACTAGCCA 58.092 45.000 20.33 0.00 37.85 4.75
1957 2006 4.441913 GCCACAAGATTAATTCCATGGGTG 60.442 45.833 13.02 7.64 0.00 4.61
1964 2018 7.322664 TCATTTCTTGCCACAAGATTAATTCC 58.677 34.615 10.60 0.00 0.00 3.01
2016 2072 9.363763 CGAGTATGCATGAACTCTAATAATGAT 57.636 33.333 21.62 0.00 40.00 2.45
2029 2085 2.988010 AAGGAGCGAGTATGCATGAA 57.012 45.000 10.16 0.00 37.31 2.57
2038 2094 3.070302 ACTCTTTCAAGAAAGGAGCGAGT 59.930 43.478 19.27 13.24 45.80 4.18
2039 2095 3.431572 CACTCTTTCAAGAAAGGAGCGAG 59.568 47.826 19.27 12.72 45.80 5.03
2040 2096 3.181465 ACACTCTTTCAAGAAAGGAGCGA 60.181 43.478 19.27 2.85 45.80 4.93
2041 2097 3.134458 ACACTCTTTCAAGAAAGGAGCG 58.866 45.455 19.27 12.61 45.80 5.03
2042 2098 5.301555 AGTACACTCTTTCAAGAAAGGAGC 58.698 41.667 19.27 7.25 45.80 4.70
2043 2099 7.281100 ACAAAGTACACTCTTTCAAGAAAGGAG 59.719 37.037 19.27 16.64 45.80 3.69
2044 2100 7.110155 ACAAAGTACACTCTTTCAAGAAAGGA 58.890 34.615 19.27 8.09 45.80 3.36
2045 2101 7.321745 ACAAAGTACACTCTTTCAAGAAAGG 57.678 36.000 19.27 13.43 45.80 3.11
2046 2102 7.698130 CCAACAAAGTACACTCTTTCAAGAAAG 59.302 37.037 14.77 14.77 46.82 2.62
2047 2103 7.392113 TCCAACAAAGTACACTCTTTCAAGAAA 59.608 33.333 0.00 0.00 35.77 2.52
2048 2104 6.882140 TCCAACAAAGTACACTCTTTCAAGAA 59.118 34.615 0.00 0.00 35.77 2.52
2049 2105 6.411376 TCCAACAAAGTACACTCTTTCAAGA 58.589 36.000 0.00 0.00 35.77 3.02
2050 2106 6.677781 TCCAACAAAGTACACTCTTTCAAG 57.322 37.500 0.00 0.00 35.77 3.02
2051 2107 7.175990 ACTTTCCAACAAAGTACACTCTTTCAA 59.824 33.333 0.00 0.00 38.58 2.69
2052 2108 6.657541 ACTTTCCAACAAAGTACACTCTTTCA 59.342 34.615 0.00 0.00 38.58 2.69
2053 2109 7.085052 ACTTTCCAACAAAGTACACTCTTTC 57.915 36.000 0.00 0.00 38.58 2.62
2054 2110 6.657541 TGACTTTCCAACAAAGTACACTCTTT 59.342 34.615 0.00 0.00 40.27 2.52
2055 2111 6.177610 TGACTTTCCAACAAAGTACACTCTT 58.822 36.000 0.00 0.00 40.27 2.85
2056 2112 5.741011 TGACTTTCCAACAAAGTACACTCT 58.259 37.500 0.00 0.00 40.27 3.24
2057 2113 6.431198 TTGACTTTCCAACAAAGTACACTC 57.569 37.500 0.00 0.00 40.27 3.51
2058 2114 7.404671 AATTGACTTTCCAACAAAGTACACT 57.595 32.000 0.00 0.00 40.27 3.55
2059 2115 8.474006 AAAATTGACTTTCCAACAAAGTACAC 57.526 30.769 0.00 0.00 40.27 2.90
2093 2149 9.439500 GGTCTATTATTGTATAAATACGGCCAA 57.561 33.333 2.24 0.00 36.06 4.52
2094 2150 8.595421 TGGTCTATTATTGTATAAATACGGCCA 58.405 33.333 2.24 0.00 36.06 5.36
2095 2151 9.439500 TTGGTCTATTATTGTATAAATACGGCC 57.561 33.333 0.00 0.00 36.06 6.13
2125 2181 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
2126 2182 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
2127 2183 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
2128 2184 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
2129 2185 8.786898 TGAATCTAATGCTACTAATTTGATGGC 58.213 33.333 0.00 0.00 32.33 4.40
2176 2232 9.851686 AATGCTTTGTGAAATCAGATAGGTATA 57.148 29.630 1.44 0.00 0.00 1.47
2177 2233 8.627403 CAATGCTTTGTGAAATCAGATAGGTAT 58.373 33.333 4.21 0.00 0.00 2.73
2178 2234 7.828717 TCAATGCTTTGTGAAATCAGATAGGTA 59.171 33.333 11.67 0.00 34.32 3.08
2179 2235 6.660521 TCAATGCTTTGTGAAATCAGATAGGT 59.339 34.615 11.67 0.00 34.32 3.08
2180 2236 7.066645 TCTCAATGCTTTGTGAAATCAGATAGG 59.933 37.037 12.96 0.00 33.62 2.57
2181 2237 7.982224 TCTCAATGCTTTGTGAAATCAGATAG 58.018 34.615 12.96 0.37 33.62 2.08
2182 2238 7.926674 TCTCAATGCTTTGTGAAATCAGATA 57.073 32.000 12.96 0.00 33.62 1.98
2183 2239 6.829229 TCTCAATGCTTTGTGAAATCAGAT 57.171 33.333 12.96 0.00 33.62 2.90
2184 2240 6.829229 ATCTCAATGCTTTGTGAAATCAGA 57.171 33.333 17.60 9.64 38.45 3.27
2185 2241 9.582431 AATTATCTCAATGCTTTGTGAAATCAG 57.418 29.630 17.60 5.27 38.45 2.90
2186 2242 9.932207 AAATTATCTCAATGCTTTGTGAAATCA 57.068 25.926 17.60 6.12 38.45 2.57
2188 2244 9.932207 TCAAATTATCTCAATGCTTTGTGAAAT 57.068 25.926 17.60 14.89 38.45 2.17
2189 2245 9.195411 GTCAAATTATCTCAATGCTTTGTGAAA 57.805 29.630 17.60 13.76 38.45 2.69
2190 2246 7.814107 GGTCAAATTATCTCAATGCTTTGTGAA 59.186 33.333 17.60 6.30 38.45 3.18
2191 2247 7.315142 GGTCAAATTATCTCAATGCTTTGTGA 58.685 34.615 16.44 16.44 39.08 3.58
2192 2248 6.532657 GGGTCAAATTATCTCAATGCTTTGTG 59.467 38.462 11.67 9.65 34.32 3.33
2193 2249 6.438425 AGGGTCAAATTATCTCAATGCTTTGT 59.562 34.615 11.67 0.00 34.32 2.83
2194 2250 6.870769 AGGGTCAAATTATCTCAATGCTTTG 58.129 36.000 5.99 5.99 0.00 2.77
2195 2251 6.894103 AGAGGGTCAAATTATCTCAATGCTTT 59.106 34.615 0.00 0.00 0.00 3.51
2196 2252 6.430007 AGAGGGTCAAATTATCTCAATGCTT 58.570 36.000 0.00 0.00 0.00 3.91
2197 2253 6.011122 AGAGGGTCAAATTATCTCAATGCT 57.989 37.500 0.00 0.00 0.00 3.79
2198 2254 7.807977 TTAGAGGGTCAAATTATCTCAATGC 57.192 36.000 0.00 0.00 0.00 3.56
2209 2265 9.875691 GCTTTCAATTTTATTAGAGGGTCAAAT 57.124 29.630 0.00 0.00 0.00 2.32
2210 2266 8.865090 TGCTTTCAATTTTATTAGAGGGTCAAA 58.135 29.630 0.00 0.00 0.00 2.69
2211 2267 8.303876 GTGCTTTCAATTTTATTAGAGGGTCAA 58.696 33.333 0.00 0.00 0.00 3.18
2212 2268 7.450014 TGTGCTTTCAATTTTATTAGAGGGTCA 59.550 33.333 0.00 0.00 0.00 4.02
2213 2269 7.755373 GTGTGCTTTCAATTTTATTAGAGGGTC 59.245 37.037 0.00 0.00 0.00 4.46
2214 2270 7.451566 AGTGTGCTTTCAATTTTATTAGAGGGT 59.548 33.333 0.00 0.00 0.00 4.34
2215 2271 7.830739 AGTGTGCTTTCAATTTTATTAGAGGG 58.169 34.615 0.00 0.00 0.00 4.30
2224 2280 9.768662 ATCTTGAAATAGTGTGCTTTCAATTTT 57.231 25.926 9.03 0.00 45.33 1.82
2225 2281 9.199982 CATCTTGAAATAGTGTGCTTTCAATTT 57.800 29.630 9.03 0.00 45.33 1.82
2226 2282 7.816031 CCATCTTGAAATAGTGTGCTTTCAATT 59.184 33.333 9.03 0.38 45.33 2.32
2227 2283 7.177216 TCCATCTTGAAATAGTGTGCTTTCAAT 59.823 33.333 9.03 0.00 45.33 2.57
2228 2284 6.489700 TCCATCTTGAAATAGTGTGCTTTCAA 59.510 34.615 8.46 8.46 44.69 2.69
2229 2285 6.003326 TCCATCTTGAAATAGTGTGCTTTCA 58.997 36.000 0.00 0.00 39.06 2.69
2230 2286 6.404074 CCTCCATCTTGAAATAGTGTGCTTTC 60.404 42.308 0.00 0.00 33.06 2.62
2231 2287 5.416952 CCTCCATCTTGAAATAGTGTGCTTT 59.583 40.000 0.00 0.00 0.00 3.51
2232 2288 4.946157 CCTCCATCTTGAAATAGTGTGCTT 59.054 41.667 0.00 0.00 0.00 3.91
2233 2289 4.521146 CCTCCATCTTGAAATAGTGTGCT 58.479 43.478 0.00 0.00 0.00 4.40
2234 2290 3.629398 CCCTCCATCTTGAAATAGTGTGC 59.371 47.826 0.00 0.00 0.00 4.57
2235 2291 4.878397 GTCCCTCCATCTTGAAATAGTGTG 59.122 45.833 0.00 0.00 0.00 3.82
2236 2292 4.785376 AGTCCCTCCATCTTGAAATAGTGT 59.215 41.667 0.00 0.00 0.00 3.55
2237 2293 5.365021 AGTCCCTCCATCTTGAAATAGTG 57.635 43.478 0.00 0.00 0.00 2.74
2238 2294 7.512992 CAATAGTCCCTCCATCTTGAAATAGT 58.487 38.462 0.00 0.00 0.00 2.12
2239 2295 6.429385 GCAATAGTCCCTCCATCTTGAAATAG 59.571 42.308 0.00 0.00 0.00 1.73
2240 2296 6.299141 GCAATAGTCCCTCCATCTTGAAATA 58.701 40.000 0.00 0.00 0.00 1.40
2241 2297 5.136105 GCAATAGTCCCTCCATCTTGAAAT 58.864 41.667 0.00 0.00 0.00 2.17
2242 2298 4.526970 GCAATAGTCCCTCCATCTTGAAA 58.473 43.478 0.00 0.00 0.00 2.69
2243 2299 3.432186 CGCAATAGTCCCTCCATCTTGAA 60.432 47.826 0.00 0.00 0.00 2.69
2244 2300 2.103094 CGCAATAGTCCCTCCATCTTGA 59.897 50.000 0.00 0.00 0.00 3.02
2245 2301 2.103094 TCGCAATAGTCCCTCCATCTTG 59.897 50.000 0.00 0.00 0.00 3.02
2246 2302 2.398588 TCGCAATAGTCCCTCCATCTT 58.601 47.619 0.00 0.00 0.00 2.40
2247 2303 2.088104 TCGCAATAGTCCCTCCATCT 57.912 50.000 0.00 0.00 0.00 2.90
2248 2304 2.910688 TTCGCAATAGTCCCTCCATC 57.089 50.000 0.00 0.00 0.00 3.51
2249 2305 3.864789 AATTCGCAATAGTCCCTCCAT 57.135 42.857 0.00 0.00 0.00 3.41
2250 2306 3.278574 CAAATTCGCAATAGTCCCTCCA 58.721 45.455 0.00 0.00 0.00 3.86
2251 2307 2.033424 GCAAATTCGCAATAGTCCCTCC 59.967 50.000 0.00 0.00 0.00 4.30
2252 2308 2.945668 AGCAAATTCGCAATAGTCCCTC 59.054 45.455 0.00 0.00 0.00 4.30
2253 2309 3.004752 AGCAAATTCGCAATAGTCCCT 57.995 42.857 0.00 0.00 0.00 4.20
2254 2310 4.261197 CCTTAGCAAATTCGCAATAGTCCC 60.261 45.833 0.00 0.00 0.00 4.46
2255 2311 4.789802 GCCTTAGCAAATTCGCAATAGTCC 60.790 45.833 0.00 0.00 39.53 3.85
2256 2312 4.282873 GCCTTAGCAAATTCGCAATAGTC 58.717 43.478 0.00 0.00 39.53 2.59
2257 2313 4.292977 GCCTTAGCAAATTCGCAATAGT 57.707 40.909 0.00 0.00 39.53 2.12
2317 2373 5.697633 TCGACTAAACCAACACTTCCAATAC 59.302 40.000 0.00 0.00 0.00 1.89
2322 2379 4.514066 ACAATCGACTAAACCAACACTTCC 59.486 41.667 0.00 0.00 0.00 3.46
2384 2441 4.481112 GCCAATCTTGCCGGTGCG 62.481 66.667 1.90 0.00 41.78 5.34
2403 2460 7.125811 AGGTGTTAGATGGCTACTTCTTATTCA 59.874 37.037 0.00 0.00 33.61 2.57
2404 2461 7.501844 AGGTGTTAGATGGCTACTTCTTATTC 58.498 38.462 0.00 0.00 33.61 1.75
2409 2466 5.900123 ACATAGGTGTTAGATGGCTACTTCT 59.100 40.000 0.00 0.00 34.01 2.85
2455 2513 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
2456 2514 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
2457 2515 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
2458 2516 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
2459 2517 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
2460 2518 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
2461 2519 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
2462 2520 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
2463 2521 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
2464 2522 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
2649 2707 9.617523 TCTGCATATAAGATTTGATCAAAGTCA 57.382 29.630 24.17 11.02 33.32 3.41
2650 2708 9.875675 GTCTGCATATAAGATTTGATCAAAGTC 57.124 33.333 24.17 19.70 33.32 3.01
2651 2709 9.624373 AGTCTGCATATAAGATTTGATCAAAGT 57.376 29.630 24.17 14.86 33.32 2.66
2663 2721 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
2664 2722 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
2665 2723 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
2666 2724 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
2667 2725 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
2668 2726 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
2669 2727 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
2670 2728 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
2671 2729 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
2672 2730 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
2673 2731 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
2674 2732 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
2675 2733 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
2676 2734 6.641474 AGATACTCCCTCCGTTTCTTTTTAG 58.359 40.000 0.00 0.00 0.00 1.85
2677 2735 6.616237 AGATACTCCCTCCGTTTCTTTTTA 57.384 37.500 0.00 0.00 0.00 1.52
2678 2736 5.500546 AGATACTCCCTCCGTTTCTTTTT 57.499 39.130 0.00 0.00 0.00 1.94
2679 2737 5.500546 AAGATACTCCCTCCGTTTCTTTT 57.499 39.130 0.00 0.00 31.56 2.27
2680 2738 5.500546 AAAGATACTCCCTCCGTTTCTTT 57.499 39.130 0.00 0.00 37.63 2.52
2681 2739 5.221864 ACAAAAGATACTCCCTCCGTTTCTT 60.222 40.000 0.00 0.00 35.25 2.52
2682 2740 4.286291 ACAAAAGATACTCCCTCCGTTTCT 59.714 41.667 0.00 0.00 0.00 2.52
2683 2741 4.576879 ACAAAAGATACTCCCTCCGTTTC 58.423 43.478 0.00 0.00 0.00 2.78
2684 2742 4.635699 ACAAAAGATACTCCCTCCGTTT 57.364 40.909 0.00 0.00 0.00 3.60
2685 2743 5.952347 ATACAAAAGATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
2686 2744 5.671493 CAATACAAAAGATACTCCCTCCGT 58.329 41.667 0.00 0.00 0.00 4.69
2687 2745 4.511826 GCAATACAAAAGATACTCCCTCCG 59.488 45.833 0.00 0.00 0.00 4.63
2688 2746 5.437060 TGCAATACAAAAGATACTCCCTCC 58.563 41.667 0.00 0.00 0.00 4.30
2689 2747 7.573968 ATTGCAATACAAAAGATACTCCCTC 57.426 36.000 11.02 0.00 42.86 4.30
2690 2748 7.836183 AGAATTGCAATACAAAAGATACTCCCT 59.164 33.333 13.39 0.00 42.86 4.20
2691 2749 8.000780 AGAATTGCAATACAAAAGATACTCCC 57.999 34.615 13.39 0.00 42.86 4.30
2692 2750 9.860898 AAAGAATTGCAATACAAAAGATACTCC 57.139 29.630 13.39 0.00 42.86 3.85
2697 2755 9.635520 CAGAGAAAGAATTGCAATACAAAAGAT 57.364 29.630 13.39 0.00 42.86 2.40
2698 2756 8.849168 TCAGAGAAAGAATTGCAATACAAAAGA 58.151 29.630 13.39 0.76 42.86 2.52
2699 2757 9.635520 ATCAGAGAAAGAATTGCAATACAAAAG 57.364 29.630 13.39 0.00 42.86 2.27
2700 2758 9.985730 AATCAGAGAAAGAATTGCAATACAAAA 57.014 25.926 13.39 0.00 42.86 2.44
2701 2759 9.985730 AAATCAGAGAAAGAATTGCAATACAAA 57.014 25.926 13.39 0.00 42.86 2.83
2702 2760 9.630098 GAAATCAGAGAAAGAATTGCAATACAA 57.370 29.630 13.39 0.00 44.01 2.41
2703 2761 9.017509 AGAAATCAGAGAAAGAATTGCAATACA 57.982 29.630 13.39 0.00 0.00 2.29
2704 2762 9.500864 GAGAAATCAGAGAAAGAATTGCAATAC 57.499 33.333 13.39 2.74 0.00 1.89
2705 2763 9.234827 TGAGAAATCAGAGAAAGAATTGCAATA 57.765 29.630 13.39 0.00 0.00 1.90
2706 2764 8.118976 TGAGAAATCAGAGAAAGAATTGCAAT 57.881 30.769 5.99 5.99 0.00 3.56
2707 2765 7.514784 TGAGAAATCAGAGAAAGAATTGCAA 57.485 32.000 0.00 0.00 0.00 4.08
2708 2766 7.698506 ATGAGAAATCAGAGAAAGAATTGCA 57.301 32.000 0.00 0.00 0.00 4.08
2709 2767 8.983307 AAATGAGAAATCAGAGAAAGAATTGC 57.017 30.769 0.00 0.00 0.00 3.56
2711 2769 9.837525 CGAAAATGAGAAATCAGAGAAAGAATT 57.162 29.630 0.00 0.00 0.00 2.17
2712 2770 9.007901 ACGAAAATGAGAAATCAGAGAAAGAAT 57.992 29.630 0.00 0.00 0.00 2.40
2713 2771 8.383318 ACGAAAATGAGAAATCAGAGAAAGAA 57.617 30.769 0.00 0.00 0.00 2.52
2714 2772 7.969536 ACGAAAATGAGAAATCAGAGAAAGA 57.030 32.000 0.00 0.00 0.00 2.52
2718 2776 9.219603 ACAAATACGAAAATGAGAAATCAGAGA 57.780 29.630 0.00 0.00 0.00 3.10
2719 2777 9.270576 CACAAATACGAAAATGAGAAATCAGAG 57.729 33.333 0.00 0.00 0.00 3.35
2720 2778 7.750458 GCACAAATACGAAAATGAGAAATCAGA 59.250 33.333 0.00 0.00 0.00 3.27
2721 2779 7.752239 AGCACAAATACGAAAATGAGAAATCAG 59.248 33.333 0.00 0.00 0.00 2.90
2722 2780 7.592938 AGCACAAATACGAAAATGAGAAATCA 58.407 30.769 0.00 0.00 0.00 2.57
2723 2781 7.965107 AGAGCACAAATACGAAAATGAGAAATC 59.035 33.333 0.00 0.00 0.00 2.17
2724 2782 7.820648 AGAGCACAAATACGAAAATGAGAAAT 58.179 30.769 0.00 0.00 0.00 2.17
2725 2783 7.173218 AGAGAGCACAAATACGAAAATGAGAAA 59.827 33.333 0.00 0.00 0.00 2.52
2726 2784 6.650807 AGAGAGCACAAATACGAAAATGAGAA 59.349 34.615 0.00 0.00 0.00 2.87
2727 2785 6.166279 AGAGAGCACAAATACGAAAATGAGA 58.834 36.000 0.00 0.00 0.00 3.27
2728 2786 6.312426 AGAGAGAGCACAAATACGAAAATGAG 59.688 38.462 0.00 0.00 0.00 2.90
2729 2787 6.166279 AGAGAGAGCACAAATACGAAAATGA 58.834 36.000 0.00 0.00 0.00 2.57
2730 2788 6.312426 AGAGAGAGAGCACAAATACGAAAATG 59.688 38.462 0.00 0.00 0.00 2.32
2731 2789 6.402222 AGAGAGAGAGCACAAATACGAAAAT 58.598 36.000 0.00 0.00 0.00 1.82
2732 2790 5.784177 AGAGAGAGAGCACAAATACGAAAA 58.216 37.500 0.00 0.00 0.00 2.29
2733 2791 5.184096 AGAGAGAGAGAGCACAAATACGAAA 59.816 40.000 0.00 0.00 0.00 3.46
2734 2792 4.702612 AGAGAGAGAGAGCACAAATACGAA 59.297 41.667 0.00 0.00 0.00 3.85
2735 2793 4.265893 AGAGAGAGAGAGCACAAATACGA 58.734 43.478 0.00 0.00 0.00 3.43
2736 2794 4.335315 AGAGAGAGAGAGAGCACAAATACG 59.665 45.833 0.00 0.00 0.00 3.06
2737 2795 5.590259 AGAGAGAGAGAGAGAGCACAAATAC 59.410 44.000 0.00 0.00 0.00 1.89
2738 2796 5.754782 AGAGAGAGAGAGAGAGCACAAATA 58.245 41.667 0.00 0.00 0.00 1.40
2739 2797 4.603131 AGAGAGAGAGAGAGAGCACAAAT 58.397 43.478 0.00 0.00 0.00 2.32
2740 2798 4.009675 GAGAGAGAGAGAGAGAGCACAAA 58.990 47.826 0.00 0.00 0.00 2.83
2741 2799 3.264193 AGAGAGAGAGAGAGAGAGCACAA 59.736 47.826 0.00 0.00 0.00 3.33
2742 2800 2.840038 AGAGAGAGAGAGAGAGAGCACA 59.160 50.000 0.00 0.00 0.00 4.57
2743 2801 3.133721 AGAGAGAGAGAGAGAGAGAGCAC 59.866 52.174 0.00 0.00 0.00 4.40
2744 2802 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
2745 2803 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
2746 2804 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2747 2805 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2748 2806 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2749 2807 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2750 2808 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2751 2809 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2752 2810 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2753 2811 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2754 2812 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2755 2813 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2756 2814 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2757 2815 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2758 2816 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2759 2817 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2760 2818 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2761 2819 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2762 2820 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2763 2821 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2764 2822 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2765 2823 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2766 2824 5.599732 CAAGAGAGAGAGAGAGAGAGAGAG 58.400 50.000 0.00 0.00 0.00 3.20
2767 2825 4.141846 GCAAGAGAGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
2768 2826 4.125703 GCAAGAGAGAGAGAGAGAGAGAG 58.874 52.174 0.00 0.00 0.00 3.20
2769 2827 3.519107 TGCAAGAGAGAGAGAGAGAGAGA 59.481 47.826 0.00 0.00 0.00 3.10
2770 2828 3.875727 CTGCAAGAGAGAGAGAGAGAGAG 59.124 52.174 0.00 0.00 34.07 3.20
2771 2829 3.264193 ACTGCAAGAGAGAGAGAGAGAGA 59.736 47.826 0.00 0.00 37.43 3.10
2772 2830 3.614092 ACTGCAAGAGAGAGAGAGAGAG 58.386 50.000 0.00 0.00 37.43 3.20
2773 2831 3.719268 ACTGCAAGAGAGAGAGAGAGA 57.281 47.619 0.00 0.00 37.43 3.10
2774 2832 3.758023 TCAACTGCAAGAGAGAGAGAGAG 59.242 47.826 0.00 0.00 37.43 3.20
2775 2833 3.505680 GTCAACTGCAAGAGAGAGAGAGA 59.494 47.826 0.00 0.00 37.43 3.10
2776 2834 3.367292 GGTCAACTGCAAGAGAGAGAGAG 60.367 52.174 0.00 0.00 37.43 3.20
2777 2835 2.560542 GGTCAACTGCAAGAGAGAGAGA 59.439 50.000 0.00 0.00 37.43 3.10
2778 2836 2.353605 GGGTCAACTGCAAGAGAGAGAG 60.354 54.545 0.00 0.00 37.43 3.20
2779 2837 1.620819 GGGTCAACTGCAAGAGAGAGA 59.379 52.381 0.00 0.00 37.43 3.10
2780 2838 1.622811 AGGGTCAACTGCAAGAGAGAG 59.377 52.381 0.00 0.00 37.43 3.20
2781 2839 1.722034 AGGGTCAACTGCAAGAGAGA 58.278 50.000 0.00 0.00 37.43 3.10
2782 2840 3.196469 TGATAGGGTCAACTGCAAGAGAG 59.804 47.826 0.00 0.00 37.43 3.20
2783 2841 3.173151 TGATAGGGTCAACTGCAAGAGA 58.827 45.455 0.00 0.00 37.43 3.10
2784 2842 3.616956 TGATAGGGTCAACTGCAAGAG 57.383 47.619 0.00 0.00 37.43 2.85
2785 2843 4.574674 AATGATAGGGTCAACTGCAAGA 57.425 40.909 0.00 0.00 40.97 3.02
2786 2844 7.220030 AGTATAATGATAGGGTCAACTGCAAG 58.780 38.462 0.00 0.00 40.97 4.01
2787 2845 7.136822 AGTATAATGATAGGGTCAACTGCAA 57.863 36.000 0.00 0.00 40.97 4.08
2788 2846 6.239600 GGAGTATAATGATAGGGTCAACTGCA 60.240 42.308 0.00 0.00 40.97 4.41
2789 2847 6.166982 GGAGTATAATGATAGGGTCAACTGC 58.833 44.000 0.00 0.00 40.97 4.40
2790 2848 6.498651 AGGGAGTATAATGATAGGGTCAACTG 59.501 42.308 0.00 0.00 40.97 3.16
2791 2849 6.635021 AGGGAGTATAATGATAGGGTCAACT 58.365 40.000 0.00 0.00 40.97 3.16
2792 2850 6.070710 GGAGGGAGTATAATGATAGGGTCAAC 60.071 46.154 0.00 0.00 40.97 3.18
2793 2851 6.023603 GGAGGGAGTATAATGATAGGGTCAA 58.976 44.000 0.00 0.00 40.97 3.18
2794 2852 5.590818 GGAGGGAGTATAATGATAGGGTCA 58.409 45.833 0.00 0.00 42.06 4.02
2795 2853 4.645588 CGGAGGGAGTATAATGATAGGGTC 59.354 50.000 0.00 0.00 0.00 4.46
2796 2854 4.045590 ACGGAGGGAGTATAATGATAGGGT 59.954 45.833 0.00 0.00 0.00 4.34
2797 2855 4.611367 ACGGAGGGAGTATAATGATAGGG 58.389 47.826 0.00 0.00 0.00 3.53
2798 2856 4.645588 GGACGGAGGGAGTATAATGATAGG 59.354 50.000 0.00 0.00 0.00 2.57
2799 2857 4.335874 CGGACGGAGGGAGTATAATGATAG 59.664 50.000 0.00 0.00 0.00 2.08
2800 2858 4.267536 CGGACGGAGGGAGTATAATGATA 58.732 47.826 0.00 0.00 0.00 2.15
2801 2859 3.090037 CGGACGGAGGGAGTATAATGAT 58.910 50.000 0.00 0.00 0.00 2.45
2802 2860 2.511659 CGGACGGAGGGAGTATAATGA 58.488 52.381 0.00 0.00 0.00 2.57
2803 2861 1.544691 CCGGACGGAGGGAGTATAATG 59.455 57.143 4.40 0.00 37.50 1.90
2804 2862 1.426598 TCCGGACGGAGGGAGTATAAT 59.573 52.381 9.76 0.00 39.76 1.28
2805 2863 0.846015 TCCGGACGGAGGGAGTATAA 59.154 55.000 9.76 0.00 39.76 0.98
2806 2864 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
2807 2865 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
2808 2866 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2809 2867 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2810 2868 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2811 2869 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2812 2870 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2813 2871 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2814 2872 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2815 2873 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2816 2874 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2817 2875 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2818 2876 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2819 2877 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2820 2878 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2821 2879 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2828 2886 9.918630 CTCCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.