Multiple sequence alignment - TraesCS7A01G403500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G403500 chr7A 100.000 4442 0 0 1 4442 583870472 583874913 0.000000e+00 8203.0
1 TraesCS7A01G403500 chr7B 92.859 3795 149 43 136 3884 540247284 540251002 0.000000e+00 5395.0
2 TraesCS7A01G403500 chr7B 87.170 569 52 8 3703 4256 706070726 706071288 1.050000e-175 627.0
3 TraesCS7A01G403500 chr7B 89.773 264 22 2 3761 4019 686917748 686917485 2.560000e-87 333.0
4 TraesCS7A01G403500 chr7B 79.298 285 36 8 3742 4011 748640479 748640755 1.270000e-40 178.0
5 TraesCS7A01G403500 chr7B 96.429 56 2 0 68 123 540247175 540247230 4.730000e-15 93.5
6 TraesCS7A01G403500 chr7D 93.463 3641 127 41 136 3702 511323848 511327451 0.000000e+00 5302.0
7 TraesCS7A01G403500 chr2D 77.907 946 185 23 2471 3404 637903674 637904607 6.450000e-158 568.0
8 TraesCS7A01G403500 chr2D 75.263 1140 200 63 1309 2401 426942845 426943949 6.730000e-128 468.0
9 TraesCS7A01G403500 chr2D 92.105 266 15 6 4011 4273 540821264 540821526 1.950000e-98 370.0
10 TraesCS7A01G403500 chr2D 78.947 285 44 8 3745 4015 52949149 52949431 3.530000e-41 180.0
11 TraesCS7A01G403500 chr2A 77.519 943 194 17 2471 3404 761306776 761307709 6.490000e-153 551.0
12 TraesCS7A01G403500 chr2A 75.657 1142 193 57 1310 2401 561556155 561555049 1.440000e-134 490.0
13 TraesCS7A01G403500 chr2A 94.758 248 12 1 4011 4257 162455653 162455900 6.970000e-103 385.0
14 TraesCS7A01G403500 chr2A 90.278 288 14 4 3737 4011 162455905 162455619 9.080000e-97 364.0
15 TraesCS7A01G403500 chr1D 75.783 958 210 20 2471 3417 6540937 6539991 8.700000e-127 464.0
16 TraesCS7A01G403500 chr1A 76.159 906 198 16 2471 3367 7812435 7813331 1.130000e-125 460.0
17 TraesCS7A01G403500 chr1A 94.071 253 13 2 4011 4262 14432277 14432528 2.510000e-102 383.0
18 TraesCS7A01G403500 chr1A 72.948 536 113 21 1156 1672 7811153 7811675 1.650000e-34 158.0
19 TraesCS7A01G403500 chr2B 74.978 1143 201 58 1307 2401 503771118 503772223 8.760000e-122 448.0
20 TraesCS7A01G403500 chr2B 95.475 221 10 0 3792 4012 159879623 159879843 1.970000e-93 353.0
21 TraesCS7A01G403500 chr2B 78.571 280 47 10 3745 4015 309501070 309501345 5.910000e-39 172.0
22 TraesCS7A01G403500 chr2B 86.000 150 19 2 2250 2398 796598666 796598518 4.600000e-35 159.0
23 TraesCS7A01G403500 chr6A 92.364 275 16 3 3742 4011 922124 922398 1.940000e-103 387.0
24 TraesCS7A01G403500 chr6A 94.779 249 12 1 4011 4258 242208635 242208883 1.940000e-103 387.0
25 TraesCS7A01G403500 chr6A 89.456 294 17 2 3741 4020 6890680 6890387 4.220000e-95 359.0
26 TraesCS7A01G403500 chr6A 85.714 224 29 3 3792 4014 335413617 335413396 2.670000e-57 233.0
27 TraesCS7A01G403500 chr6A 77.090 323 53 15 1396 1712 603404401 603404708 2.750000e-37 167.0
28 TraesCS7A01G403500 chr6A 78.151 119 14 3 3737 3843 333042494 333042612 1.030000e-06 65.8
29 TraesCS7A01G403500 chr4A 94.758 248 12 1 4011 4257 619765513 619765760 6.970000e-103 385.0
30 TraesCS7A01G403500 chr4A 71.748 984 234 40 2461 3422 598147314 598146353 2.070000e-58 237.0
31 TraesCS7A01G403500 chr1B 94.737 247 13 0 4011 4257 687415193 687414947 6.970000e-103 385.0
32 TraesCS7A01G403500 chr1B 92.720 261 17 2 4011 4270 495803999 495804258 4.190000e-100 375.0
33 TraesCS7A01G403500 chr5A 94.378 249 13 1 4011 4258 383894789 383894541 9.020000e-102 381.0
34 TraesCS7A01G403500 chr5A 90.244 287 15 1 3742 4015 637058117 637058403 3.270000e-96 363.0
35 TraesCS7A01G403500 chrUn 91.882 271 19 2 3743 4011 32037602 32037333 4.190000e-100 375.0
36 TraesCS7A01G403500 chrUn 77.376 442 90 9 2471 2907 22436995 22437431 2.050000e-63 254.0
37 TraesCS7A01G403500 chr3B 95.909 220 9 0 3792 4011 17350352 17350571 1.520000e-94 357.0
38 TraesCS7A01G403500 chr3B 82.524 103 5 5 3742 3831 621533604 621533706 1.320000e-10 78.7
39 TraesCS7A01G403500 chr4B 71.589 982 239 36 2461 3422 9516148 9515187 9.610000e-57 231.0
40 TraesCS7A01G403500 chr4D 71.950 877 216 29 2458 3319 5525795 5526656 3.460000e-56 230.0
41 TraesCS7A01G403500 chr6B 76.355 406 64 22 1314 1712 694972328 694972708 5.870000e-44 189.0
42 TraesCS7A01G403500 chr6D 75.369 406 68 22 1314 1712 456789076 456789456 2.750000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G403500 chr7A 583870472 583874913 4441 False 8203.00 8203 100.0000 1 4442 1 chr7A.!!$F1 4441
1 TraesCS7A01G403500 chr7B 540247175 540251002 3827 False 2744.25 5395 94.6440 68 3884 2 chr7B.!!$F3 3816
2 TraesCS7A01G403500 chr7B 706070726 706071288 562 False 627.00 627 87.1700 3703 4256 1 chr7B.!!$F1 553
3 TraesCS7A01G403500 chr7D 511323848 511327451 3603 False 5302.00 5302 93.4630 136 3702 1 chr7D.!!$F1 3566
4 TraesCS7A01G403500 chr2D 637903674 637904607 933 False 568.00 568 77.9070 2471 3404 1 chr2D.!!$F4 933
5 TraesCS7A01G403500 chr2D 426942845 426943949 1104 False 468.00 468 75.2630 1309 2401 1 chr2D.!!$F2 1092
6 TraesCS7A01G403500 chr2A 761306776 761307709 933 False 551.00 551 77.5190 2471 3404 1 chr2A.!!$F2 933
7 TraesCS7A01G403500 chr2A 561555049 561556155 1106 True 490.00 490 75.6570 1310 2401 1 chr2A.!!$R2 1091
8 TraesCS7A01G403500 chr1D 6539991 6540937 946 True 464.00 464 75.7830 2471 3417 1 chr1D.!!$R1 946
9 TraesCS7A01G403500 chr1A 7811153 7813331 2178 False 309.00 460 74.5535 1156 3367 2 chr1A.!!$F2 2211
10 TraesCS7A01G403500 chr2B 503771118 503772223 1105 False 448.00 448 74.9780 1307 2401 1 chr2B.!!$F3 1094
11 TraesCS7A01G403500 chr4A 598146353 598147314 961 True 237.00 237 71.7480 2461 3422 1 chr4A.!!$R1 961
12 TraesCS7A01G403500 chr4B 9515187 9516148 961 True 231.00 231 71.5890 2461 3422 1 chr4B.!!$R1 961
13 TraesCS7A01G403500 chr4D 5525795 5526656 861 False 230.00 230 71.9500 2458 3319 1 chr4D.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.173255 GCAGTGCACTCTCCTCTCTC 59.827 60.000 18.64 0.0 0.00 3.20 F
340 385 0.179234 GGTTGGCTAGCTTCTCCCTC 59.821 60.000 15.72 0.0 0.00 4.30 F
989 1097 0.248825 CTTGATCGAGGCGAGGTGAG 60.249 60.000 1.50 0.0 39.91 3.51 F
995 1103 1.439644 GAGGCGAGGTGAGGTGATC 59.560 63.158 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1006 1114 3.058160 GTGCGCCTCATGGTTGCT 61.058 61.111 4.18 0.00 37.60 3.91 R
2889 3085 1.421268 ACATTCTTCCAGTGGCAGACA 59.579 47.619 11.40 3.86 0.00 3.41 R
3039 3235 0.770166 TCTTGGTGTCCATGTGGGGA 60.770 55.000 0.00 0.00 37.22 4.81 R
3466 3662 5.171476 CCGATCGAAGAACAAGCCATATAT 58.829 41.667 18.66 0.00 43.58 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.429058 CACCAGGCAGTGCACTCT 59.571 61.111 18.64 9.58 0.00 3.24
18 19 1.670406 CACCAGGCAGTGCACTCTC 60.670 63.158 18.64 12.10 0.00 3.20
19 20 2.046507 CCAGGCAGTGCACTCTCC 60.047 66.667 18.64 20.38 0.00 3.71
20 21 2.591072 CCAGGCAGTGCACTCTCCT 61.591 63.158 24.46 24.46 0.00 3.69
21 22 1.079266 CAGGCAGTGCACTCTCCTC 60.079 63.158 26.36 12.02 0.00 3.71
22 23 1.229145 AGGCAGTGCACTCTCCTCT 60.229 57.895 24.46 12.69 0.00 3.69
23 24 1.217779 GGCAGTGCACTCTCCTCTC 59.782 63.158 18.64 0.14 0.00 3.20
24 25 1.257055 GGCAGTGCACTCTCCTCTCT 61.257 60.000 18.64 0.00 0.00 3.10
25 26 0.173255 GCAGTGCACTCTCCTCTCTC 59.827 60.000 18.64 0.00 0.00 3.20
26 27 0.817013 CAGTGCACTCTCCTCTCTCC 59.183 60.000 18.64 0.00 0.00 3.71
27 28 0.407528 AGTGCACTCTCCTCTCTCCA 59.592 55.000 15.25 0.00 0.00 3.86
28 29 1.006998 AGTGCACTCTCCTCTCTCCAT 59.993 52.381 15.25 0.00 0.00 3.41
29 30 1.136695 GTGCACTCTCCTCTCTCCATG 59.863 57.143 10.32 0.00 0.00 3.66
30 31 1.006400 TGCACTCTCCTCTCTCCATGA 59.994 52.381 0.00 0.00 0.00 3.07
31 32 1.682854 GCACTCTCCTCTCTCCATGAG 59.317 57.143 0.00 0.00 43.96 2.90
32 33 2.949963 GCACTCTCCTCTCTCCATGAGT 60.950 54.545 0.00 0.00 43.13 3.41
33 34 2.689471 CACTCTCCTCTCTCCATGAGTG 59.311 54.545 0.00 0.00 43.11 3.51
34 35 2.580322 ACTCTCCTCTCTCCATGAGTGA 59.420 50.000 0.00 0.00 43.13 3.41
35 36 3.216800 CTCTCCTCTCTCCATGAGTGAG 58.783 54.545 13.56 13.56 44.77 3.51
36 37 2.849318 TCTCCTCTCTCCATGAGTGAGA 59.151 50.000 19.45 15.31 46.74 3.27
37 38 2.951642 CTCCTCTCTCCATGAGTGAGAC 59.048 54.545 19.45 0.00 46.74 3.36
38 39 2.310052 TCCTCTCTCCATGAGTGAGACA 59.690 50.000 19.45 7.39 46.74 3.41
39 40 2.689471 CCTCTCTCCATGAGTGAGACAG 59.311 54.545 19.45 9.39 46.74 3.51
40 41 2.689471 CTCTCTCCATGAGTGAGACAGG 59.311 54.545 14.82 3.99 46.74 4.00
41 42 1.136695 CTCTCCATGAGTGAGACAGGC 59.863 57.143 0.00 0.00 38.18 4.85
42 43 0.900421 CTCCATGAGTGAGACAGGCA 59.100 55.000 0.00 0.00 31.26 4.75
43 44 0.610174 TCCATGAGTGAGACAGGCAC 59.390 55.000 0.00 0.00 36.53 5.01
44 45 0.738762 CCATGAGTGAGACAGGCACG 60.739 60.000 0.00 0.00 41.04 5.34
45 46 0.738762 CATGAGTGAGACAGGCACGG 60.739 60.000 0.00 0.00 41.04 4.94
46 47 2.433318 GAGTGAGACAGGCACGGC 60.433 66.667 0.00 0.00 41.04 5.68
47 48 3.226429 GAGTGAGACAGGCACGGCA 62.226 63.158 0.00 0.00 41.04 5.69
48 49 3.044305 GTGAGACAGGCACGGCAC 61.044 66.667 0.00 0.00 0.00 5.01
49 50 4.314440 TGAGACAGGCACGGCACC 62.314 66.667 0.00 0.00 0.00 5.01
111 112 2.691011 GCTGTACAAAAGTTGGTTCCCA 59.309 45.455 0.00 0.00 34.12 4.37
112 113 3.243401 GCTGTACAAAAGTTGGTTCCCAG 60.243 47.826 0.00 0.00 33.81 4.45
197 239 1.153628 CGATTCCCCGTGTGGAGAC 60.154 63.158 0.00 0.00 37.49 3.36
200 242 1.885163 ATTCCCCGTGTGGAGACGAC 61.885 60.000 0.00 0.00 42.10 4.34
220 265 2.193447 CATCTTTACTTAGCGCGCTCA 58.807 47.619 40.23 27.28 0.00 4.26
235 280 3.308595 CGCGCTCATACCACTTTTAATCA 59.691 43.478 5.56 0.00 0.00 2.57
243 288 6.661805 TCATACCACTTTTAATCACCTTTCCC 59.338 38.462 0.00 0.00 0.00 3.97
244 289 5.074746 ACCACTTTTAATCACCTTTCCCT 57.925 39.130 0.00 0.00 0.00 4.20
245 290 5.077564 ACCACTTTTAATCACCTTTCCCTC 58.922 41.667 0.00 0.00 0.00 4.30
246 291 4.462834 CCACTTTTAATCACCTTTCCCTCC 59.537 45.833 0.00 0.00 0.00 4.30
247 292 4.156008 CACTTTTAATCACCTTTCCCTCCG 59.844 45.833 0.00 0.00 0.00 4.63
248 293 4.042435 ACTTTTAATCACCTTTCCCTCCGA 59.958 41.667 0.00 0.00 0.00 4.55
249 294 4.855298 TTTAATCACCTTTCCCTCCGAT 57.145 40.909 0.00 0.00 0.00 4.18
250 295 4.417426 TTAATCACCTTTCCCTCCGATC 57.583 45.455 0.00 0.00 0.00 3.69
251 296 1.879575 ATCACCTTTCCCTCCGATCA 58.120 50.000 0.00 0.00 0.00 2.92
252 297 0.902531 TCACCTTTCCCTCCGATCAC 59.097 55.000 0.00 0.00 0.00 3.06
253 298 0.613260 CACCTTTCCCTCCGATCACA 59.387 55.000 0.00 0.00 0.00 3.58
268 313 0.744874 TCACATCCCTCGTTCGATCC 59.255 55.000 0.00 0.00 0.00 3.36
308 353 1.083242 GCTCGCCTCTCAGCTCAAAG 61.083 60.000 0.00 0.00 32.48 2.77
340 385 0.179234 GGTTGGCTAGCTTCTCCCTC 59.821 60.000 15.72 0.00 0.00 4.30
346 391 2.026729 GGCTAGCTTCTCCCTCAAACTT 60.027 50.000 15.72 0.00 0.00 2.66
356 402 1.889170 CCCTCAAACTTCTTTGGAGCC 59.111 52.381 0.00 0.00 37.87 4.70
377 423 1.210931 CATGGCTCACACAAAGGCG 59.789 57.895 0.00 0.00 41.93 5.52
378 424 1.073025 ATGGCTCACACAAAGGCGA 59.927 52.632 0.00 0.00 41.93 5.54
396 442 3.248602 GGCGAATTAAGCTGTCCATGTAG 59.751 47.826 5.52 0.00 34.52 2.74
397 443 3.871594 GCGAATTAAGCTGTCCATGTAGT 59.128 43.478 0.00 0.00 0.00 2.73
398 444 5.047847 GCGAATTAAGCTGTCCATGTAGTA 58.952 41.667 0.00 0.00 0.00 1.82
399 445 5.696724 GCGAATTAAGCTGTCCATGTAGTAT 59.303 40.000 0.00 0.00 0.00 2.12
400 446 6.346919 GCGAATTAAGCTGTCCATGTAGTATG 60.347 42.308 0.00 0.00 0.00 2.39
401 447 6.701841 CGAATTAAGCTGTCCATGTAGTATGT 59.298 38.462 0.00 0.00 0.00 2.29
402 448 7.865889 CGAATTAAGCTGTCCATGTAGTATGTA 59.134 37.037 0.00 0.00 0.00 2.29
403 449 9.197694 GAATTAAGCTGTCCATGTAGTATGTAG 57.802 37.037 0.00 0.00 0.00 2.74
404 450 7.655521 TTAAGCTGTCCATGTAGTATGTAGT 57.344 36.000 0.00 0.00 0.00 2.73
405 451 5.521906 AGCTGTCCATGTAGTATGTAGTG 57.478 43.478 0.00 0.00 0.00 2.74
406 452 4.956700 AGCTGTCCATGTAGTATGTAGTGT 59.043 41.667 0.00 0.00 0.00 3.55
429 475 3.059884 CACACACACATACTGACAGACC 58.940 50.000 10.08 0.00 0.00 3.85
430 476 2.698274 ACACACACATACTGACAGACCA 59.302 45.455 10.08 0.00 0.00 4.02
436 482 3.748048 CACATACTGACAGACCAAGGTTG 59.252 47.826 10.08 0.00 0.00 3.77
470 516 3.440415 TGCAGATCGCGACCTCGT 61.440 61.111 12.93 0.00 46.97 4.18
581 629 1.968540 GCCTCACCGAAAGCTGCTT 60.969 57.895 9.53 9.53 0.00 3.91
618 675 1.160329 GCGTGACAAGGCTTCTGTGT 61.160 55.000 0.00 0.00 34.31 3.72
619 676 1.299541 CGTGACAAGGCTTCTGTGTT 58.700 50.000 0.00 0.00 0.00 3.32
759 853 2.702270 TGCTAGATGAGGGCCTGATA 57.298 50.000 12.95 0.00 0.00 2.15
768 862 0.762461 AGGGCCTGATAGACCAGAGC 60.762 60.000 4.50 0.00 36.29 4.09
876 980 8.803799 GGTGAAATAGTGTTTGTAGTTTGTTTG 58.196 33.333 0.00 0.00 0.00 2.93
877 981 8.803799 GTGAAATAGTGTTTGTAGTTTGTTTGG 58.196 33.333 0.00 0.00 0.00 3.28
884 988 4.442375 TTGTAGTTTGTTTGGTGGTGTG 57.558 40.909 0.00 0.00 0.00 3.82
887 991 4.281182 TGTAGTTTGTTTGGTGGTGTGTTT 59.719 37.500 0.00 0.00 0.00 2.83
888 992 5.475909 TGTAGTTTGTTTGGTGGTGTGTTTA 59.524 36.000 0.00 0.00 0.00 2.01
890 994 6.043854 AGTTTGTTTGGTGGTGTGTTTATT 57.956 33.333 0.00 0.00 0.00 1.40
891 995 6.103330 AGTTTGTTTGGTGGTGTGTTTATTC 58.897 36.000 0.00 0.00 0.00 1.75
892 996 4.294416 TGTTTGGTGGTGTGTTTATTCG 57.706 40.909 0.00 0.00 0.00 3.34
893 997 3.945921 TGTTTGGTGGTGTGTTTATTCGA 59.054 39.130 0.00 0.00 0.00 3.71
894 998 4.035792 TGTTTGGTGGTGTGTTTATTCGAG 59.964 41.667 0.00 0.00 0.00 4.04
895 999 2.773487 TGGTGGTGTGTTTATTCGAGG 58.227 47.619 0.00 0.00 0.00 4.63
908 1012 3.742433 ATTCGAGGGATCTGACATGTC 57.258 47.619 19.27 19.27 0.00 3.06
910 1014 3.577805 TCGAGGGATCTGACATGTCTA 57.422 47.619 25.55 14.64 0.00 2.59
912 1016 3.823304 TCGAGGGATCTGACATGTCTATG 59.177 47.826 25.55 15.56 40.24 2.23
913 1017 3.613671 CGAGGGATCTGACATGTCTATGC 60.614 52.174 25.55 21.41 37.85 3.14
917 1021 3.306641 GGATCTGACATGTCTATGCCTCC 60.307 52.174 25.55 17.39 37.85 4.30
948 1055 5.222233 TGTTTTGTTGGGATGGAGATAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
949 1056 4.778213 TTGTTGGGATGGAGATAGGAAG 57.222 45.455 0.00 0.00 0.00 3.46
950 1057 4.007581 TGTTGGGATGGAGATAGGAAGA 57.992 45.455 0.00 0.00 0.00 2.87
951 1058 4.570926 TGTTGGGATGGAGATAGGAAGAT 58.429 43.478 0.00 0.00 0.00 2.40
952 1059 4.594920 TGTTGGGATGGAGATAGGAAGATC 59.405 45.833 0.00 0.00 0.00 2.75
953 1060 3.435275 TGGGATGGAGATAGGAAGATCG 58.565 50.000 0.00 0.00 0.00 3.69
954 1061 3.076032 TGGGATGGAGATAGGAAGATCGA 59.924 47.826 0.00 0.00 0.00 3.59
955 1062 4.090090 GGGATGGAGATAGGAAGATCGAA 58.910 47.826 0.00 0.00 0.00 3.71
956 1063 4.081917 GGGATGGAGATAGGAAGATCGAAC 60.082 50.000 0.00 0.00 0.00 3.95
989 1097 0.248825 CTTGATCGAGGCGAGGTGAG 60.249 60.000 1.50 0.00 39.91 3.51
990 1098 1.667154 TTGATCGAGGCGAGGTGAGG 61.667 60.000 0.00 0.00 39.91 3.86
991 1099 2.043852 ATCGAGGCGAGGTGAGGT 60.044 61.111 0.00 0.00 39.91 3.85
992 1100 2.343163 GATCGAGGCGAGGTGAGGTG 62.343 65.000 0.00 0.00 39.91 4.00
993 1101 2.838748 ATCGAGGCGAGGTGAGGTGA 62.839 60.000 0.00 0.00 39.91 4.02
994 1102 2.418910 CGAGGCGAGGTGAGGTGAT 61.419 63.158 0.00 0.00 0.00 3.06
995 1103 1.439644 GAGGCGAGGTGAGGTGATC 59.560 63.158 0.00 0.00 0.00 2.92
996 1104 2.105128 GGCGAGGTGAGGTGATCG 59.895 66.667 0.00 0.00 38.19 3.69
998 1106 2.105128 CGAGGTGAGGTGATCGGC 59.895 66.667 0.00 0.00 0.00 5.54
999 1107 2.710902 CGAGGTGAGGTGATCGGCA 61.711 63.158 0.00 0.00 0.00 5.69
2201 2394 4.923942 CGGCATCCTCAGCGCCAT 62.924 66.667 2.29 0.00 46.60 4.40
2514 2710 3.920196 ACGCTGGAAACCGACCGT 61.920 61.111 0.00 0.00 0.00 4.83
2907 3103 2.679059 CGATGTCTGCCACTGGAAGAAT 60.679 50.000 7.42 4.20 39.43 2.40
3411 3607 1.070786 AAGCAACTTCTTCCGGCGA 59.929 52.632 9.30 0.00 0.00 5.54
3462 3658 7.403671 TCTGAACTACTATGAGTGACCTACTT 58.596 38.462 0.00 0.00 40.53 2.24
3463 3659 8.546322 TCTGAACTACTATGAGTGACCTACTTA 58.454 37.037 0.00 0.00 40.53 2.24
3464 3660 8.503458 TGAACTACTATGAGTGACCTACTTAC 57.497 38.462 0.00 0.00 40.53 2.34
3465 3661 8.327271 TGAACTACTATGAGTGACCTACTTACT 58.673 37.037 0.00 0.00 40.53 2.24
3466 3662 9.829507 GAACTACTATGAGTGACCTACTTACTA 57.170 37.037 0.00 0.00 40.53 1.82
3573 3784 9.039870 TGTTTGTTAATTAAATGCTGAGTTTGG 57.960 29.630 0.00 0.00 0.00 3.28
3591 3802 1.140852 TGGACACTGTGGGTTTGAGAG 59.859 52.381 13.09 0.00 0.00 3.20
3598 3809 2.359975 GGGTTTGAGAGCACCCCG 60.360 66.667 0.00 0.00 46.50 5.73
3619 3839 3.671459 CGCGTGTAACTATGTTTGTCTCA 59.329 43.478 0.00 0.00 31.75 3.27
3657 3877 1.307097 GCATGCTTGAAGCTCTAGGG 58.693 55.000 18.94 2.79 42.97 3.53
3702 3923 7.168219 ACACAATATATGGACGGAATTGCTAT 58.832 34.615 0.00 0.00 32.10 2.97
3704 3925 9.161629 CACAATATATGGACGGAATTGCTATTA 57.838 33.333 0.00 0.00 32.10 0.98
3705 3926 9.905713 ACAATATATGGACGGAATTGCTATTAT 57.094 29.630 0.00 0.00 32.10 1.28
3707 3928 8.908786 ATATATGGACGGAATTGCTATTATGG 57.091 34.615 0.00 0.00 0.00 2.74
3712 3933 2.749621 CGGAATTGCTATTATGGCCCTC 59.250 50.000 0.00 0.00 0.00 4.30
3721 3942 3.756082 ATTATGGCCCTCTTTGGTTCA 57.244 42.857 0.00 0.00 0.00 3.18
3728 3949 3.308473 GGCCCTCTTTGGTTCATAAGTCT 60.308 47.826 0.00 0.00 0.00 3.24
3772 3994 7.593644 GTGTTTGTTTACATGGACTTATTGGTC 59.406 37.037 0.00 0.00 35.66 4.02
3775 3997 8.556213 TTGTTTACATGGACTTATTGGTCTAC 57.444 34.615 0.00 0.00 36.55 2.59
3776 3998 7.681679 TGTTTACATGGACTTATTGGTCTACA 58.318 34.615 0.00 0.00 36.55 2.74
3808 4043 5.888982 AAGTCTCTAAACCAAACAGGAGA 57.111 39.130 0.00 0.00 41.22 3.71
3816 4051 8.660295 TCTAAACCAAACAGGAGAGACTTATA 57.340 34.615 0.00 0.00 41.22 0.98
3832 4067 5.130643 AGACTTATAGGGACTTAAAGTGGGC 59.869 44.000 0.00 0.00 40.60 5.36
3846 4081 4.601406 AAGTGGGCATTTGGGACTTATA 57.399 40.909 0.00 0.00 0.00 0.98
3852 4087 7.069455 AGTGGGCATTTGGGACTTATAAAATAC 59.931 37.037 0.00 0.00 0.00 1.89
3860 4095 6.732154 TGGGACTTATAAAATACGACTCTCG 58.268 40.000 0.00 0.00 46.93 4.04
3868 4103 3.278668 AATACGACTCTCGAGGAGGAA 57.721 47.619 13.56 0.00 43.74 3.36
3955 4190 4.287845 GGTAGGGACTTTTTAGGGACTTGA 59.712 45.833 0.00 0.00 39.49 3.02
3962 4197 7.395617 GGACTTTTTAGGGACTTGAGACTTAT 58.604 38.462 0.00 0.00 41.75 1.73
3964 4199 9.589111 GACTTTTTAGGGACTTGAGACTTATAG 57.411 37.037 0.00 0.00 41.75 1.31
3972 4207 5.395435 GGACTTGAGACTTATAGGTTGGGAC 60.395 48.000 0.00 0.00 0.00 4.46
3977 4212 7.989947 TGAGACTTATAGGTTGGGACTAAAT 57.010 36.000 0.00 0.00 0.00 1.40
4005 4240 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
4009 4244 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
4017 4252 0.404040 CCAAACAGGGCCTTAGTCCA 59.596 55.000 1.32 0.00 41.85 4.02
4029 4264 5.821470 GGGCCTTAGTCCAAACTTATAAGTC 59.179 44.000 18.28 5.93 36.47 3.01
4037 4272 6.272558 AGTCCAAACTTATAAGTCCCAAGTCT 59.727 38.462 18.28 8.64 38.57 3.24
4052 4287 5.247792 TCCCAAGTCTCTAAAAAGTCCCTAC 59.752 44.000 0.00 0.00 0.00 3.18
4053 4288 5.012768 CCCAAGTCTCTAAAAAGTCCCTACA 59.987 44.000 0.00 0.00 0.00 2.74
4054 4289 6.296489 CCCAAGTCTCTAAAAAGTCCCTACAT 60.296 42.308 0.00 0.00 0.00 2.29
4055 4290 6.595716 CCAAGTCTCTAAAAAGTCCCTACATG 59.404 42.308 0.00 0.00 0.00 3.21
4079 4314 5.853572 TTGGTTCCTGGGACTTATAAGTT 57.146 39.130 18.96 3.63 39.88 2.66
4080 4315 5.853572 TGGTTCCTGGGACTTATAAGTTT 57.146 39.130 18.96 0.00 39.88 2.66
4122 4357 8.072480 ACAACTATAAGTCCCTATAAGTCCCTT 58.928 37.037 0.00 0.00 0.00 3.95
4183 4418 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
4193 4428 3.503800 AGTCCCTCCTGTTTGGTTTAC 57.496 47.619 0.00 0.00 37.07 2.01
4197 4432 2.825532 CCCTCCTGTTTGGTTTACATGG 59.174 50.000 0.00 0.00 37.07 3.66
4208 4443 6.894735 TTGGTTTACATGGGACTTATAGGA 57.105 37.500 0.00 0.00 0.00 2.94
4241 4477 4.440808 TCCCTAAACCAATAAGTCCCTGA 58.559 43.478 0.00 0.00 0.00 3.86
4256 4492 2.243736 TCCCTGAAAACAAACACCCTCT 59.756 45.455 0.00 0.00 0.00 3.69
4257 4493 3.460340 TCCCTGAAAACAAACACCCTCTA 59.540 43.478 0.00 0.00 0.00 2.43
4258 4494 4.105697 TCCCTGAAAACAAACACCCTCTAT 59.894 41.667 0.00 0.00 0.00 1.98
4259 4495 5.311121 TCCCTGAAAACAAACACCCTCTATA 59.689 40.000 0.00 0.00 0.00 1.31
4260 4496 6.011981 TCCCTGAAAACAAACACCCTCTATAT 60.012 38.462 0.00 0.00 0.00 0.86
4261 4497 6.663523 CCCTGAAAACAAACACCCTCTATATT 59.336 38.462 0.00 0.00 0.00 1.28
4262 4498 7.178451 CCCTGAAAACAAACACCCTCTATATTT 59.822 37.037 0.00 0.00 0.00 1.40
4263 4499 9.238368 CCTGAAAACAAACACCCTCTATATTTA 57.762 33.333 0.00 0.00 0.00 1.40
4267 4503 9.816787 AAAACAAACACCCTCTATATTTAAGGA 57.183 29.630 0.00 0.00 31.44 3.36
4268 4504 8.803397 AACAAACACCCTCTATATTTAAGGAC 57.197 34.615 0.00 0.00 31.44 3.85
4269 4505 7.924541 ACAAACACCCTCTATATTTAAGGACA 58.075 34.615 0.00 0.00 31.44 4.02
4270 4506 8.557450 ACAAACACCCTCTATATTTAAGGACAT 58.443 33.333 0.00 0.00 31.44 3.06
4271 4507 9.057089 CAAACACCCTCTATATTTAAGGACATC 57.943 37.037 0.00 0.00 31.44 3.06
4272 4508 8.568617 AACACCCTCTATATTTAAGGACATCT 57.431 34.615 0.00 0.00 31.44 2.90
4273 4509 8.196378 ACACCCTCTATATTTAAGGACATCTC 57.804 38.462 0.00 0.00 31.44 2.75
4274 4510 7.789831 ACACCCTCTATATTTAAGGACATCTCA 59.210 37.037 0.00 0.00 31.44 3.27
4275 4511 8.820831 CACCCTCTATATTTAAGGACATCTCAT 58.179 37.037 0.00 0.00 31.44 2.90
4276 4512 9.041354 ACCCTCTATATTTAAGGACATCTCATC 57.959 37.037 0.00 0.00 31.44 2.92
4277 4513 9.265862 CCCTCTATATTTAAGGACATCTCATCT 57.734 37.037 0.00 0.00 31.44 2.90
4306 4542 6.959639 TTTTGAGGTTTTAAGCACATCTCT 57.040 33.333 3.95 0.00 0.00 3.10
4307 4543 6.959639 TTTGAGGTTTTAAGCACATCTCTT 57.040 33.333 3.95 0.00 0.00 2.85
4308 4544 6.560253 TTGAGGTTTTAAGCACATCTCTTC 57.440 37.500 3.95 0.00 0.00 2.87
4309 4545 5.869579 TGAGGTTTTAAGCACATCTCTTCT 58.130 37.500 3.95 0.00 0.00 2.85
4310 4546 7.004555 TGAGGTTTTAAGCACATCTCTTCTA 57.995 36.000 3.95 0.00 0.00 2.10
4311 4547 7.450074 TGAGGTTTTAAGCACATCTCTTCTAA 58.550 34.615 3.95 0.00 0.00 2.10
4312 4548 7.604164 TGAGGTTTTAAGCACATCTCTTCTAAG 59.396 37.037 3.95 0.00 0.00 2.18
4313 4549 7.454225 AGGTTTTAAGCACATCTCTTCTAAGT 58.546 34.615 0.00 0.00 0.00 2.24
4314 4550 7.939588 AGGTTTTAAGCACATCTCTTCTAAGTT 59.060 33.333 0.00 0.00 0.00 2.66
4315 4551 8.017946 GGTTTTAAGCACATCTCTTCTAAGTTG 58.982 37.037 0.00 0.00 0.00 3.16
4316 4552 8.560374 GTTTTAAGCACATCTCTTCTAAGTTGT 58.440 33.333 0.00 0.00 0.00 3.32
4317 4553 8.677148 TTTAAGCACATCTCTTCTAAGTTGTT 57.323 30.769 0.00 0.00 0.00 2.83
4318 4554 9.772973 TTTAAGCACATCTCTTCTAAGTTGTTA 57.227 29.630 0.00 0.00 0.00 2.41
4319 4555 7.897575 AAGCACATCTCTTCTAAGTTGTTAG 57.102 36.000 0.00 0.00 37.58 2.34
4320 4556 5.872070 AGCACATCTCTTCTAAGTTGTTAGC 59.128 40.000 0.00 0.00 36.35 3.09
4321 4557 5.064071 GCACATCTCTTCTAAGTTGTTAGCC 59.936 44.000 0.00 0.00 36.35 3.93
4322 4558 6.166279 CACATCTCTTCTAAGTTGTTAGCCA 58.834 40.000 0.00 0.00 36.35 4.75
4323 4559 6.820656 CACATCTCTTCTAAGTTGTTAGCCAT 59.179 38.462 0.00 0.00 36.35 4.40
4324 4560 7.335422 CACATCTCTTCTAAGTTGTTAGCCATT 59.665 37.037 0.00 0.00 36.35 3.16
4325 4561 7.335422 ACATCTCTTCTAAGTTGTTAGCCATTG 59.665 37.037 0.00 0.00 36.35 2.82
4326 4562 6.173339 TCTCTTCTAAGTTGTTAGCCATTGG 58.827 40.000 0.00 0.00 36.35 3.16
4327 4563 6.013725 TCTCTTCTAAGTTGTTAGCCATTGGA 60.014 38.462 6.95 0.00 36.35 3.53
4328 4564 6.721318 TCTTCTAAGTTGTTAGCCATTGGAT 58.279 36.000 6.95 1.78 36.35 3.41
4329 4565 7.857456 TCTTCTAAGTTGTTAGCCATTGGATA 58.143 34.615 6.95 0.51 36.35 2.59
4330 4566 8.494433 TCTTCTAAGTTGTTAGCCATTGGATAT 58.506 33.333 6.95 0.00 36.35 1.63
4331 4567 8.450578 TTCTAAGTTGTTAGCCATTGGATATG 57.549 34.615 6.95 0.00 36.35 1.78
4332 4568 6.998074 TCTAAGTTGTTAGCCATTGGATATGG 59.002 38.462 6.95 0.00 41.99 2.74
4333 4569 5.387113 AGTTGTTAGCCATTGGATATGGA 57.613 39.130 6.95 0.00 41.64 3.41
4334 4570 5.957132 AGTTGTTAGCCATTGGATATGGAT 58.043 37.500 6.95 3.94 41.64 3.41
4335 4571 5.771666 AGTTGTTAGCCATTGGATATGGATG 59.228 40.000 6.95 0.00 41.64 3.51
4336 4572 5.323382 TGTTAGCCATTGGATATGGATGT 57.677 39.130 6.95 0.00 41.64 3.06
4337 4573 5.704354 TGTTAGCCATTGGATATGGATGTT 58.296 37.500 6.95 0.00 41.64 2.71
4338 4574 5.535783 TGTTAGCCATTGGATATGGATGTTG 59.464 40.000 6.95 0.00 41.64 3.33
4339 4575 4.188937 AGCCATTGGATATGGATGTTGT 57.811 40.909 6.95 0.00 41.64 3.32
4340 4576 5.323382 AGCCATTGGATATGGATGTTGTA 57.677 39.130 6.95 0.00 41.64 2.41
4341 4577 5.704354 AGCCATTGGATATGGATGTTGTAA 58.296 37.500 6.95 0.00 41.64 2.41
4342 4578 5.771666 AGCCATTGGATATGGATGTTGTAAG 59.228 40.000 6.95 0.00 41.64 2.34
4343 4579 5.536161 GCCATTGGATATGGATGTTGTAAGT 59.464 40.000 6.95 0.00 41.64 2.24
4344 4580 6.040842 GCCATTGGATATGGATGTTGTAAGTT 59.959 38.462 6.95 0.00 41.64 2.66
4345 4581 7.651808 CCATTGGATATGGATGTTGTAAGTTC 58.348 38.462 0.00 0.00 41.64 3.01
4346 4582 7.255590 CCATTGGATATGGATGTTGTAAGTTCC 60.256 40.741 0.00 0.00 41.64 3.62
4347 4583 5.364778 TGGATATGGATGTTGTAAGTTCCG 58.635 41.667 0.00 0.00 0.00 4.30
4348 4584 5.104693 TGGATATGGATGTTGTAAGTTCCGT 60.105 40.000 0.00 0.00 0.00 4.69
4349 4585 5.236478 GGATATGGATGTTGTAAGTTCCGTG 59.764 44.000 0.00 0.00 0.00 4.94
4350 4586 2.147958 TGGATGTTGTAAGTTCCGTGC 58.852 47.619 0.00 0.00 0.00 5.34
4351 4587 2.147958 GGATGTTGTAAGTTCCGTGCA 58.852 47.619 0.00 0.00 0.00 4.57
4352 4588 2.550606 GGATGTTGTAAGTTCCGTGCAA 59.449 45.455 0.00 0.00 0.00 4.08
4353 4589 3.003897 GGATGTTGTAAGTTCCGTGCAAA 59.996 43.478 0.00 0.00 0.00 3.68
4354 4590 4.498345 GGATGTTGTAAGTTCCGTGCAAAA 60.498 41.667 0.00 0.00 0.00 2.44
4355 4591 4.436242 TGTTGTAAGTTCCGTGCAAAAA 57.564 36.364 0.00 0.00 0.00 1.94
4356 4592 5.000012 TGTTGTAAGTTCCGTGCAAAAAT 58.000 34.783 0.00 0.00 0.00 1.82
4357 4593 5.038033 TGTTGTAAGTTCCGTGCAAAAATC 58.962 37.500 0.00 0.00 0.00 2.17
4358 4594 4.231718 TGTAAGTTCCGTGCAAAAATCC 57.768 40.909 0.00 0.00 0.00 3.01
4359 4595 3.632604 TGTAAGTTCCGTGCAAAAATCCA 59.367 39.130 0.00 0.00 0.00 3.41
4360 4596 4.279671 TGTAAGTTCCGTGCAAAAATCCAT 59.720 37.500 0.00 0.00 0.00 3.41
4361 4597 5.473846 TGTAAGTTCCGTGCAAAAATCCATA 59.526 36.000 0.00 0.00 0.00 2.74
4362 4598 5.659440 AAGTTCCGTGCAAAAATCCATAT 57.341 34.783 0.00 0.00 0.00 1.78
4363 4599 6.767524 AAGTTCCGTGCAAAAATCCATATA 57.232 33.333 0.00 0.00 0.00 0.86
4364 4600 6.959639 AGTTCCGTGCAAAAATCCATATAT 57.040 33.333 0.00 0.00 0.00 0.86
4365 4601 6.738114 AGTTCCGTGCAAAAATCCATATATG 58.262 36.000 5.68 5.68 0.00 1.78
4378 4614 2.771089 CATATATGGACTTGCGTGCCT 58.229 47.619 4.68 0.00 0.00 4.75
4379 4615 2.526304 TATATGGACTTGCGTGCCTC 57.474 50.000 0.00 0.00 0.00 4.70
4380 4616 0.530650 ATATGGACTTGCGTGCCTCG 60.531 55.000 0.00 0.00 43.12 4.63
4381 4617 1.884075 TATGGACTTGCGTGCCTCGT 61.884 55.000 0.83 0.00 42.13 4.18
4382 4618 2.665185 GGACTTGCGTGCCTCGTT 60.665 61.111 0.83 0.00 42.13 3.85
4383 4619 2.251642 GGACTTGCGTGCCTCGTTT 61.252 57.895 0.83 0.00 42.13 3.60
4384 4620 1.647084 GACTTGCGTGCCTCGTTTT 59.353 52.632 0.83 0.00 42.13 2.43
4385 4621 0.657368 GACTTGCGTGCCTCGTTTTG 60.657 55.000 0.83 0.00 42.13 2.44
4386 4622 1.355210 CTTGCGTGCCTCGTTTTGT 59.645 52.632 0.83 0.00 42.13 2.83
4387 4623 0.248458 CTTGCGTGCCTCGTTTTGTT 60.248 50.000 0.83 0.00 42.13 2.83
4388 4624 0.524392 TTGCGTGCCTCGTTTTGTTG 60.524 50.000 0.83 0.00 42.13 3.33
4389 4625 1.353804 GCGTGCCTCGTTTTGTTGA 59.646 52.632 0.83 0.00 42.13 3.18
4390 4626 0.928451 GCGTGCCTCGTTTTGTTGAC 60.928 55.000 0.83 0.00 42.13 3.18
4391 4627 0.316689 CGTGCCTCGTTTTGTTGACC 60.317 55.000 0.00 0.00 34.52 4.02
4392 4628 0.030235 GTGCCTCGTTTTGTTGACCC 59.970 55.000 0.00 0.00 0.00 4.46
4393 4629 1.281656 GCCTCGTTTTGTTGACCCG 59.718 57.895 0.00 0.00 0.00 5.28
4394 4630 1.281656 CCTCGTTTTGTTGACCCGC 59.718 57.895 0.00 0.00 0.00 6.13
4395 4631 1.281656 CTCGTTTTGTTGACCCGCC 59.718 57.895 0.00 0.00 0.00 6.13
4396 4632 1.153127 TCGTTTTGTTGACCCGCCT 60.153 52.632 0.00 0.00 0.00 5.52
4397 4633 0.748729 TCGTTTTGTTGACCCGCCTT 60.749 50.000 0.00 0.00 0.00 4.35
4398 4634 0.101579 CGTTTTGTTGACCCGCCTTT 59.898 50.000 0.00 0.00 0.00 3.11
4399 4635 1.470112 CGTTTTGTTGACCCGCCTTTT 60.470 47.619 0.00 0.00 0.00 2.27
4400 4636 2.198406 GTTTTGTTGACCCGCCTTTTC 58.802 47.619 0.00 0.00 0.00 2.29
4401 4637 1.770294 TTTGTTGACCCGCCTTTTCT 58.230 45.000 0.00 0.00 0.00 2.52
4402 4638 1.770294 TTGTTGACCCGCCTTTTCTT 58.230 45.000 0.00 0.00 0.00 2.52
4403 4639 1.770294 TGTTGACCCGCCTTTTCTTT 58.230 45.000 0.00 0.00 0.00 2.52
4404 4640 2.104170 TGTTGACCCGCCTTTTCTTTT 58.896 42.857 0.00 0.00 0.00 2.27
4405 4641 2.498078 TGTTGACCCGCCTTTTCTTTTT 59.502 40.909 0.00 0.00 0.00 1.94
4406 4642 3.120792 GTTGACCCGCCTTTTCTTTTTC 58.879 45.455 0.00 0.00 0.00 2.29
4407 4643 1.684450 TGACCCGCCTTTTCTTTTTCC 59.316 47.619 0.00 0.00 0.00 3.13
4408 4644 1.961394 GACCCGCCTTTTCTTTTTCCT 59.039 47.619 0.00 0.00 0.00 3.36
4409 4645 2.364324 GACCCGCCTTTTCTTTTTCCTT 59.636 45.455 0.00 0.00 0.00 3.36
4410 4646 2.769663 ACCCGCCTTTTCTTTTTCCTTT 59.230 40.909 0.00 0.00 0.00 3.11
4411 4647 3.199071 ACCCGCCTTTTCTTTTTCCTTTT 59.801 39.130 0.00 0.00 0.00 2.27
4412 4648 4.196193 CCCGCCTTTTCTTTTTCCTTTTT 58.804 39.130 0.00 0.00 0.00 1.94
4413 4649 4.035091 CCCGCCTTTTCTTTTTCCTTTTTG 59.965 41.667 0.00 0.00 0.00 2.44
4414 4650 4.634004 CCGCCTTTTCTTTTTCCTTTTTGT 59.366 37.500 0.00 0.00 0.00 2.83
4415 4651 5.220586 CCGCCTTTTCTTTTTCCTTTTTGTC 60.221 40.000 0.00 0.00 0.00 3.18
4416 4652 5.350091 CGCCTTTTCTTTTTCCTTTTTGTCA 59.650 36.000 0.00 0.00 0.00 3.58
4417 4653 6.455513 CGCCTTTTCTTTTTCCTTTTTGTCAG 60.456 38.462 0.00 0.00 0.00 3.51
4418 4654 6.675486 GCCTTTTCTTTTTCCTTTTTGTCAGC 60.675 38.462 0.00 0.00 0.00 4.26
4419 4655 6.183360 CCTTTTCTTTTTCCTTTTTGTCAGCC 60.183 38.462 0.00 0.00 0.00 4.85
4420 4656 5.675684 TTCTTTTTCCTTTTTGTCAGCCT 57.324 34.783 0.00 0.00 0.00 4.58
4421 4657 5.009854 TCTTTTTCCTTTTTGTCAGCCTG 57.990 39.130 0.00 0.00 0.00 4.85
4422 4658 4.709397 TCTTTTTCCTTTTTGTCAGCCTGA 59.291 37.500 0.00 0.00 0.00 3.86
4432 4668 0.452585 GTCAGCCTGACTCGTACTCC 59.547 60.000 17.57 0.00 43.73 3.85
4433 4669 0.680280 TCAGCCTGACTCGTACTCCC 60.680 60.000 0.00 0.00 0.00 4.30
4434 4670 0.681564 CAGCCTGACTCGTACTCCCT 60.682 60.000 0.00 0.00 0.00 4.20
4435 4671 0.394625 AGCCTGACTCGTACTCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
4436 4672 0.394625 GCCTGACTCGTACTCCCTCT 60.395 60.000 0.00 0.00 0.00 3.69
4437 4673 1.384525 CCTGACTCGTACTCCCTCTG 58.615 60.000 0.00 0.00 0.00 3.35
4438 4674 1.340211 CCTGACTCGTACTCCCTCTGT 60.340 57.143 0.00 0.00 0.00 3.41
4439 4675 2.093075 CCTGACTCGTACTCCCTCTGTA 60.093 54.545 0.00 0.00 0.00 2.74
4440 4676 3.607741 CTGACTCGTACTCCCTCTGTAA 58.392 50.000 0.00 0.00 0.00 2.41
4441 4677 4.008330 CTGACTCGTACTCCCTCTGTAAA 58.992 47.826 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.670406 GAGAGTGCACTGCCTGGTG 60.670 63.158 27.27 0.00 39.91 4.17
1 2 2.746359 GAGAGTGCACTGCCTGGT 59.254 61.111 27.27 0.00 0.00 4.00
2 3 2.046507 GGAGAGTGCACTGCCTGG 60.047 66.667 27.27 0.00 0.00 4.45
3 4 1.079266 GAGGAGAGTGCACTGCCTG 60.079 63.158 31.91 0.00 0.00 4.85
4 5 1.229145 AGAGGAGAGTGCACTGCCT 60.229 57.895 28.86 28.86 0.00 4.75
5 6 1.217779 GAGAGGAGAGTGCACTGCC 59.782 63.158 27.27 24.06 0.00 4.85
6 7 0.173255 GAGAGAGGAGAGTGCACTGC 59.827 60.000 27.27 15.85 0.00 4.40
7 8 0.817013 GGAGAGAGGAGAGTGCACTG 59.183 60.000 27.27 0.00 0.00 3.66
8 9 0.407528 TGGAGAGAGGAGAGTGCACT 59.592 55.000 21.88 21.88 0.00 4.40
9 10 1.136695 CATGGAGAGAGGAGAGTGCAC 59.863 57.143 9.40 9.40 0.00 4.57
10 11 1.006400 TCATGGAGAGAGGAGAGTGCA 59.994 52.381 0.00 0.00 0.00 4.57
11 12 1.774110 TCATGGAGAGAGGAGAGTGC 58.226 55.000 0.00 0.00 0.00 4.40
22 23 1.189752 GCCTGTCTCACTCATGGAGA 58.810 55.000 0.00 0.00 39.01 3.71
23 24 0.900421 TGCCTGTCTCACTCATGGAG 59.100 55.000 0.00 0.00 35.52 3.86
24 25 0.610174 GTGCCTGTCTCACTCATGGA 59.390 55.000 0.00 0.00 0.00 3.41
25 26 0.738762 CGTGCCTGTCTCACTCATGG 60.739 60.000 0.00 0.00 32.54 3.66
26 27 0.738762 CCGTGCCTGTCTCACTCATG 60.739 60.000 0.00 0.00 32.54 3.07
27 28 1.593787 CCGTGCCTGTCTCACTCAT 59.406 57.895 0.00 0.00 32.54 2.90
28 29 3.051210 CCGTGCCTGTCTCACTCA 58.949 61.111 0.00 0.00 32.54 3.41
29 30 2.433318 GCCGTGCCTGTCTCACTC 60.433 66.667 0.00 0.00 32.54 3.51
30 31 3.233980 TGCCGTGCCTGTCTCACT 61.234 61.111 0.00 0.00 32.54 3.41
31 32 3.044305 GTGCCGTGCCTGTCTCAC 61.044 66.667 0.00 0.00 0.00 3.51
32 33 4.314440 GGTGCCGTGCCTGTCTCA 62.314 66.667 0.00 0.00 0.00 3.27
49 50 1.131693 GGGTAAATTTCCGGCTTCACG 59.868 52.381 0.00 0.00 0.00 4.35
50 51 2.422479 GAGGGTAAATTTCCGGCTTCAC 59.578 50.000 0.00 0.00 0.00 3.18
51 52 2.307686 AGAGGGTAAATTTCCGGCTTCA 59.692 45.455 0.00 0.00 0.00 3.02
52 53 2.943690 GAGAGGGTAAATTTCCGGCTTC 59.056 50.000 0.00 0.00 0.00 3.86
53 54 2.356844 GGAGAGGGTAAATTTCCGGCTT 60.357 50.000 0.00 0.00 0.00 4.35
54 55 1.212195 GGAGAGGGTAAATTTCCGGCT 59.788 52.381 0.00 0.00 0.00 5.52
55 56 1.676746 GGAGAGGGTAAATTTCCGGC 58.323 55.000 0.00 0.00 0.00 6.13
56 57 1.133884 GGGGAGAGGGTAAATTTCCGG 60.134 57.143 0.00 0.00 0.00 5.14
57 58 1.844497 AGGGGAGAGGGTAAATTTCCG 59.156 52.381 0.00 0.00 0.00 4.30
58 59 2.687014 GCAGGGGAGAGGGTAAATTTCC 60.687 54.545 0.00 0.00 0.00 3.13
59 60 2.025321 TGCAGGGGAGAGGGTAAATTTC 60.025 50.000 0.00 0.00 0.00 2.17
60 61 2.000048 TGCAGGGGAGAGGGTAAATTT 59.000 47.619 0.00 0.00 0.00 1.82
61 62 1.285078 GTGCAGGGGAGAGGGTAAATT 59.715 52.381 0.00 0.00 0.00 1.82
62 63 0.919710 GTGCAGGGGAGAGGGTAAAT 59.080 55.000 0.00 0.00 0.00 1.40
63 64 1.550130 CGTGCAGGGGAGAGGGTAAA 61.550 60.000 0.00 0.00 0.00 2.01
64 65 1.987855 CGTGCAGGGGAGAGGGTAA 60.988 63.158 0.00 0.00 0.00 2.85
65 66 1.866483 TACGTGCAGGGGAGAGGGTA 61.866 60.000 11.67 0.00 0.00 3.69
66 67 2.531483 ATACGTGCAGGGGAGAGGGT 62.531 60.000 11.67 0.00 0.00 4.34
124 137 5.198274 GTTTATGCGGTTTGATCGATCTTC 58.802 41.667 25.02 14.70 0.00 2.87
197 239 1.072089 GCGCGCTAAGTAAAGATGTCG 60.072 52.381 26.67 0.00 0.00 4.35
200 242 2.193447 TGAGCGCGCTAAGTAAAGATG 58.807 47.619 36.69 0.00 0.00 2.90
220 265 6.800890 AGGGAAAGGTGATTAAAAGTGGTAT 58.199 36.000 0.00 0.00 0.00 2.73
235 280 1.486726 GATGTGATCGGAGGGAAAGGT 59.513 52.381 0.00 0.00 0.00 3.50
243 288 0.747255 AACGAGGGATGTGATCGGAG 59.253 55.000 0.00 0.00 40.67 4.63
244 289 0.744874 GAACGAGGGATGTGATCGGA 59.255 55.000 0.00 0.00 40.67 4.55
245 290 0.595053 CGAACGAGGGATGTGATCGG 60.595 60.000 0.00 0.00 40.67 4.18
246 291 0.380733 TCGAACGAGGGATGTGATCG 59.619 55.000 0.00 0.00 42.04 3.69
247 292 2.608261 GGATCGAACGAGGGATGTGATC 60.608 54.545 2.94 0.00 0.00 2.92
248 293 1.341531 GGATCGAACGAGGGATGTGAT 59.658 52.381 2.94 0.00 0.00 3.06
249 294 0.744874 GGATCGAACGAGGGATGTGA 59.255 55.000 2.94 0.00 0.00 3.58
250 295 0.249489 GGGATCGAACGAGGGATGTG 60.249 60.000 2.94 0.00 0.00 3.21
251 296 1.400530 GGGGATCGAACGAGGGATGT 61.401 60.000 2.94 0.00 0.00 3.06
252 297 1.367840 GGGGATCGAACGAGGGATG 59.632 63.158 2.94 0.00 0.00 3.51
253 298 2.201022 CGGGGATCGAACGAGGGAT 61.201 63.158 2.94 0.00 42.43 3.85
268 313 2.478033 GCCACGGGAAATTAGCGGG 61.478 63.158 0.00 0.00 0.00 6.13
308 353 1.354705 AGCCAACCTTTCTAGGGTTCC 59.645 52.381 0.00 0.00 38.81 3.62
340 385 2.586425 TGAGGGCTCCAAAGAAGTTTG 58.414 47.619 0.00 0.00 42.49 2.93
356 402 1.171308 CCTTTGTGTGAGCCATGAGG 58.829 55.000 0.00 0.00 38.23 3.86
377 423 9.197694 CTACATACTACATGGACAGCTTAATTC 57.802 37.037 0.00 0.00 0.00 2.17
378 424 8.705594 ACTACATACTACATGGACAGCTTAATT 58.294 33.333 0.00 0.00 0.00 1.40
404 450 4.339814 TCTGTCAGTATGTGTGTGTGTACA 59.660 41.667 0.00 0.00 37.40 2.90
405 451 4.680110 GTCTGTCAGTATGTGTGTGTGTAC 59.320 45.833 0.00 0.00 37.40 2.90
406 452 4.261867 GGTCTGTCAGTATGTGTGTGTGTA 60.262 45.833 0.00 0.00 37.40 2.90
429 475 1.383523 GCTAAGCTAGCCCAACCTTG 58.616 55.000 12.13 0.00 45.95 3.61
430 476 3.884226 GCTAAGCTAGCCCAACCTT 57.116 52.632 12.13 0.00 45.95 3.50
448 494 2.447887 GGTCGCGATCTGCACACAG 61.448 63.158 14.06 0.00 46.97 3.66
454 500 2.319011 TACACGAGGTCGCGATCTGC 62.319 60.000 29.60 16.87 44.43 4.26
455 501 0.308068 ATACACGAGGTCGCGATCTG 59.692 55.000 29.60 20.51 44.43 2.90
470 516 1.679680 CGGCGAGAAGGAAGGTATACA 59.320 52.381 0.00 0.00 0.00 2.29
618 675 0.743688 AACACATGCACGAAGCCAAA 59.256 45.000 0.00 0.00 44.83 3.28
619 676 0.310543 GAACACATGCACGAAGCCAA 59.689 50.000 0.00 0.00 44.83 4.52
768 862 3.411703 GAGATTCGCAGCACGCACG 62.412 63.158 0.00 0.00 42.60 5.34
858 956 4.525100 ACCACCAAACAAACTACAAACACT 59.475 37.500 0.00 0.00 0.00 3.55
876 980 2.081462 CCCTCGAATAAACACACCACC 58.919 52.381 0.00 0.00 0.00 4.61
877 981 3.048337 TCCCTCGAATAAACACACCAC 57.952 47.619 0.00 0.00 0.00 4.16
884 988 5.360591 ACATGTCAGATCCCTCGAATAAAC 58.639 41.667 0.00 0.00 0.00 2.01
887 991 4.474394 AGACATGTCAGATCCCTCGAATA 58.526 43.478 27.02 0.00 0.00 1.75
888 992 3.303938 AGACATGTCAGATCCCTCGAAT 58.696 45.455 27.02 0.00 0.00 3.34
890 994 2.443958 AGACATGTCAGATCCCTCGA 57.556 50.000 27.02 0.00 0.00 4.04
891 995 3.613671 GCATAGACATGTCAGATCCCTCG 60.614 52.174 27.02 9.04 34.40 4.63
892 996 3.306641 GGCATAGACATGTCAGATCCCTC 60.307 52.174 27.02 7.78 36.73 4.30
893 997 2.636893 GGCATAGACATGTCAGATCCCT 59.363 50.000 27.02 7.64 36.73 4.20
894 998 2.636893 AGGCATAGACATGTCAGATCCC 59.363 50.000 27.02 18.32 39.36 3.85
895 999 3.306641 GGAGGCATAGACATGTCAGATCC 60.307 52.174 27.02 20.24 39.36 3.36
908 1012 3.902881 AAACAGAGACAGGAGGCATAG 57.097 47.619 0.00 0.00 0.00 2.23
910 1014 2.107204 ACAAAACAGAGACAGGAGGCAT 59.893 45.455 0.00 0.00 0.00 4.40
912 1016 2.262423 ACAAAACAGAGACAGGAGGC 57.738 50.000 0.00 0.00 0.00 4.70
913 1017 2.880890 CCAACAAAACAGAGACAGGAGG 59.119 50.000 0.00 0.00 0.00 4.30
917 1021 3.254166 CCATCCCAACAAAACAGAGACAG 59.746 47.826 0.00 0.00 0.00 3.51
948 1055 0.811915 CCACGTCTCAGGTTCGATCT 59.188 55.000 0.00 0.00 0.00 2.75
949 1056 0.526662 ACCACGTCTCAGGTTCGATC 59.473 55.000 0.00 0.00 33.39 3.69
950 1057 0.243907 CACCACGTCTCAGGTTCGAT 59.756 55.000 0.00 0.00 35.52 3.59
951 1058 1.658114 CACCACGTCTCAGGTTCGA 59.342 57.895 0.00 0.00 35.52 3.71
952 1059 2.022129 GCACCACGTCTCAGGTTCG 61.022 63.158 0.00 0.00 35.52 3.95
953 1060 0.249911 AAGCACCACGTCTCAGGTTC 60.250 55.000 0.00 0.00 35.52 3.62
954 1061 0.532862 CAAGCACCACGTCTCAGGTT 60.533 55.000 0.00 0.00 35.52 3.50
955 1062 1.069765 CAAGCACCACGTCTCAGGT 59.930 57.895 0.00 0.00 39.10 4.00
956 1063 0.036952 ATCAAGCACCACGTCTCAGG 60.037 55.000 0.00 0.00 0.00 3.86
989 1097 2.440065 TGCCCATTGCCGATCACC 60.440 61.111 0.00 0.00 40.16 4.02
990 1098 3.113745 CTGCCCATTGCCGATCAC 58.886 61.111 0.00 0.00 40.16 3.06
991 1099 2.829914 GCTGCCCATTGCCGATCA 60.830 61.111 0.00 0.00 40.16 2.92
992 1100 2.417257 TTGCTGCCCATTGCCGATC 61.417 57.895 0.00 0.00 40.16 3.69
993 1101 2.362760 TTGCTGCCCATTGCCGAT 60.363 55.556 0.00 0.00 40.16 4.18
994 1102 3.372730 GTTGCTGCCCATTGCCGA 61.373 61.111 0.00 0.00 40.16 5.54
995 1103 4.440127 GGTTGCTGCCCATTGCCG 62.440 66.667 0.00 0.00 40.16 5.69
996 1104 2.662070 ATGGTTGCTGCCCATTGCC 61.662 57.895 4.79 0.00 39.73 4.52
998 1106 0.174845 CTCATGGTTGCTGCCCATTG 59.825 55.000 7.58 4.93 40.76 2.82
999 1107 0.974010 CCTCATGGTTGCTGCCCATT 60.974 55.000 7.58 0.00 40.76 3.16
1006 1114 3.058160 GTGCGCCTCATGGTTGCT 61.058 61.111 4.18 0.00 37.60 3.91
2889 3085 1.421268 ACATTCTTCCAGTGGCAGACA 59.579 47.619 11.40 3.86 0.00 3.41
3039 3235 0.770166 TCTTGGTGTCCATGTGGGGA 60.770 55.000 0.00 0.00 37.22 4.81
3462 3658 8.182227 CGATCGAAGAACAAGCCATATATAGTA 58.818 37.037 10.26 0.00 43.58 1.82
3463 3659 7.030165 CGATCGAAGAACAAGCCATATATAGT 58.970 38.462 10.26 0.00 43.58 2.12
3464 3660 6.473778 CCGATCGAAGAACAAGCCATATATAG 59.526 42.308 18.66 0.00 43.58 1.31
3465 3661 6.330278 CCGATCGAAGAACAAGCCATATATA 58.670 40.000 18.66 0.00 43.58 0.86
3466 3662 5.171476 CCGATCGAAGAACAAGCCATATAT 58.829 41.667 18.66 0.00 43.58 0.86
3573 3784 1.230324 GCTCTCAAACCCACAGTGTC 58.770 55.000 0.00 0.00 0.00 3.67
3598 3809 5.404366 TCTTGAGACAAACATAGTTACACGC 59.596 40.000 0.00 0.00 0.00 5.34
3619 3839 7.553334 AGCATGCAATTATTGTCATTCTTCTT 58.447 30.769 21.98 0.00 0.00 2.52
3675 3896 5.914635 GCAATTCCGTCCATATATTGTGTTG 59.085 40.000 0.00 0.00 0.00 3.33
3678 3899 5.947228 AGCAATTCCGTCCATATATTGTG 57.053 39.130 0.00 0.00 0.00 3.33
3679 3900 9.905713 ATAATAGCAATTCCGTCCATATATTGT 57.094 29.630 0.00 0.00 0.00 2.71
3689 3910 2.488153 GGGCCATAATAGCAATTCCGTC 59.512 50.000 4.39 0.00 0.00 4.79
3702 3923 3.756082 ATGAACCAAAGAGGGCCATAA 57.244 42.857 6.18 0.00 43.89 1.90
3704 3925 3.011708 ACTTATGAACCAAAGAGGGCCAT 59.988 43.478 6.18 0.00 43.89 4.40
3705 3926 2.378547 ACTTATGAACCAAAGAGGGCCA 59.621 45.455 6.18 0.00 43.89 5.36
3706 3927 3.017442 GACTTATGAACCAAAGAGGGCC 58.983 50.000 0.00 0.00 43.89 5.80
3707 3928 3.956744 AGACTTATGAACCAAAGAGGGC 58.043 45.455 0.00 0.00 43.89 5.19
3756 3978 5.721960 AGTCTGTAGACCAATAAGTCCATGT 59.278 40.000 8.34 0.00 45.85 3.21
3759 3981 7.786046 TTAAGTCTGTAGACCAATAAGTCCA 57.214 36.000 8.34 0.00 45.85 4.02
3808 4043 5.130643 GCCCACTTTAAGTCCCTATAAGTCT 59.869 44.000 0.00 0.00 0.00 3.24
3816 4051 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
3832 4067 9.326413 AGAGTCGTATTTTATAAGTCCCAAATG 57.674 33.333 0.00 0.00 0.00 2.32
3846 4081 3.618351 TCCTCCTCGAGAGTCGTATTTT 58.382 45.455 15.71 0.00 41.47 1.82
3852 4087 1.455248 AAGTTCCTCCTCGAGAGTCG 58.545 55.000 15.71 0.00 41.47 4.18
3860 4095 8.172070 ACTATAAGTCCCTATAAGTTCCTCCTC 58.828 40.741 0.00 0.00 0.00 3.71
3907 4142 2.836667 TGGTTCCCGGGACTTATAAGT 58.163 47.619 26.87 18.05 43.16 2.24
3908 4143 3.918294 TTGGTTCCCGGGACTTATAAG 57.082 47.619 26.87 11.05 0.00 1.73
3910 4145 2.911636 TGTTTGGTTCCCGGGACTTATA 59.088 45.455 26.87 4.80 0.00 0.98
3911 4146 1.706305 TGTTTGGTTCCCGGGACTTAT 59.294 47.619 26.87 0.00 0.00 1.73
4005 4240 5.752650 ACTTATAAGTTTGGACTAAGGCCC 58.247 41.667 12.50 0.00 35.21 5.80
4009 4244 8.101419 ACTTGGGACTTATAAGTTTGGACTAAG 58.899 37.037 18.96 18.56 39.88 2.18
4029 4264 4.642466 AGGGACTTTTTAGAGACTTGGG 57.358 45.455 0.00 0.00 27.25 4.12
4037 4272 6.607019 ACCAAACATGTAGGGACTTTTTAGA 58.393 36.000 19.48 0.00 41.75 2.10
4043 4278 3.397955 AGGAACCAAACATGTAGGGACTT 59.602 43.478 19.48 6.91 41.75 3.01
4044 4279 2.986728 AGGAACCAAACATGTAGGGACT 59.013 45.455 19.48 11.76 46.37 3.85
4052 4287 2.292828 AGTCCCAGGAACCAAACATG 57.707 50.000 0.00 0.00 0.00 3.21
4053 4288 4.675063 ATAAGTCCCAGGAACCAAACAT 57.325 40.909 0.00 0.00 0.00 2.71
4054 4289 5.073965 ACTTATAAGTCCCAGGAACCAAACA 59.926 40.000 12.50 0.00 32.86 2.83
4055 4290 5.567430 ACTTATAAGTCCCAGGAACCAAAC 58.433 41.667 12.50 0.00 32.86 2.93
4147 4382 3.161866 GGGACTTAAAGTGGGCATTTGA 58.838 45.455 0.00 0.00 0.00 2.69
4183 4418 7.114095 TCCTATAAGTCCCATGTAAACCAAAC 58.886 38.462 0.00 0.00 0.00 2.93
4241 4477 9.816787 TCCTTAAATATAGAGGGTGTTTGTTTT 57.183 29.630 0.00 0.00 0.00 2.43
4282 4518 7.346751 AGAGATGTGCTTAAAACCTCAAAAA 57.653 32.000 0.00 0.00 0.00 1.94
4283 4519 6.959639 AGAGATGTGCTTAAAACCTCAAAA 57.040 33.333 0.00 0.00 0.00 2.44
4284 4520 6.772716 AGAAGAGATGTGCTTAAAACCTCAAA 59.227 34.615 0.00 0.00 0.00 2.69
4285 4521 6.299141 AGAAGAGATGTGCTTAAAACCTCAA 58.701 36.000 0.00 0.00 0.00 3.02
4286 4522 5.869579 AGAAGAGATGTGCTTAAAACCTCA 58.130 37.500 0.00 0.00 0.00 3.86
4287 4523 7.604545 ACTTAGAAGAGATGTGCTTAAAACCTC 59.395 37.037 0.00 0.00 0.00 3.85
4288 4524 7.454225 ACTTAGAAGAGATGTGCTTAAAACCT 58.546 34.615 0.00 0.00 0.00 3.50
4289 4525 7.674471 ACTTAGAAGAGATGTGCTTAAAACC 57.326 36.000 0.00 0.00 0.00 3.27
4290 4526 8.560374 ACAACTTAGAAGAGATGTGCTTAAAAC 58.440 33.333 0.00 0.00 0.00 2.43
4291 4527 8.677148 ACAACTTAGAAGAGATGTGCTTAAAA 57.323 30.769 0.00 0.00 0.00 1.52
4292 4528 8.677148 AACAACTTAGAAGAGATGTGCTTAAA 57.323 30.769 0.00 0.00 0.00 1.52
4293 4529 9.424319 CTAACAACTTAGAAGAGATGTGCTTAA 57.576 33.333 0.00 0.00 32.29 1.85
4294 4530 7.545965 GCTAACAACTTAGAAGAGATGTGCTTA 59.454 37.037 0.00 0.00 32.29 3.09
4295 4531 6.370166 GCTAACAACTTAGAAGAGATGTGCTT 59.630 38.462 0.00 0.00 32.29 3.91
4296 4532 5.872070 GCTAACAACTTAGAAGAGATGTGCT 59.128 40.000 0.00 0.00 32.29 4.40
4297 4533 5.064071 GGCTAACAACTTAGAAGAGATGTGC 59.936 44.000 0.00 0.56 32.29 4.57
4298 4534 6.166279 TGGCTAACAACTTAGAAGAGATGTG 58.834 40.000 0.00 0.00 32.29 3.21
4299 4535 6.360370 TGGCTAACAACTTAGAAGAGATGT 57.640 37.500 0.00 0.00 32.29 3.06
4300 4536 7.201679 CCAATGGCTAACAACTTAGAAGAGATG 60.202 40.741 0.00 0.00 32.29 2.90
4301 4537 6.825721 CCAATGGCTAACAACTTAGAAGAGAT 59.174 38.462 0.00 0.00 32.29 2.75
4302 4538 6.013725 TCCAATGGCTAACAACTTAGAAGAGA 60.014 38.462 0.00 0.00 32.29 3.10
4303 4539 6.173339 TCCAATGGCTAACAACTTAGAAGAG 58.827 40.000 0.00 0.00 32.29 2.85
4304 4540 6.121776 TCCAATGGCTAACAACTTAGAAGA 57.878 37.500 0.00 0.00 32.29 2.87
4305 4541 8.562892 CATATCCAATGGCTAACAACTTAGAAG 58.437 37.037 0.00 0.00 32.29 2.85
4306 4542 7.502226 CCATATCCAATGGCTAACAACTTAGAA 59.498 37.037 0.00 0.00 32.29 2.10
4307 4543 6.998074 CCATATCCAATGGCTAACAACTTAGA 59.002 38.462 0.00 0.00 32.29 2.10
4308 4544 6.998074 TCCATATCCAATGGCTAACAACTTAG 59.002 38.462 0.00 0.00 39.01 2.18
4309 4545 6.905736 TCCATATCCAATGGCTAACAACTTA 58.094 36.000 0.00 0.00 39.01 2.24
4310 4546 5.765510 TCCATATCCAATGGCTAACAACTT 58.234 37.500 0.00 0.00 39.01 2.66
4311 4547 5.387113 TCCATATCCAATGGCTAACAACT 57.613 39.130 0.00 0.00 39.01 3.16
4312 4548 5.536161 ACATCCATATCCAATGGCTAACAAC 59.464 40.000 0.00 0.00 39.01 3.32
4313 4549 5.704354 ACATCCATATCCAATGGCTAACAA 58.296 37.500 0.00 0.00 39.01 2.83
4314 4550 5.323382 ACATCCATATCCAATGGCTAACA 57.677 39.130 0.00 0.00 39.01 2.41
4315 4551 5.536161 ACAACATCCATATCCAATGGCTAAC 59.464 40.000 0.00 0.00 39.01 2.34
4316 4552 5.704354 ACAACATCCATATCCAATGGCTAA 58.296 37.500 0.00 0.00 39.01 3.09
4317 4553 5.323382 ACAACATCCATATCCAATGGCTA 57.677 39.130 0.00 0.00 39.01 3.93
4318 4554 4.188937 ACAACATCCATATCCAATGGCT 57.811 40.909 0.00 0.00 39.01 4.75
4319 4555 5.536161 ACTTACAACATCCATATCCAATGGC 59.464 40.000 0.00 0.00 39.01 4.40
4320 4556 7.255590 GGAACTTACAACATCCATATCCAATGG 60.256 40.741 0.00 0.00 40.48 3.16
4321 4557 7.520453 CGGAACTTACAACATCCATATCCAATG 60.520 40.741 0.00 0.00 32.08 2.82
4322 4558 6.486657 CGGAACTTACAACATCCATATCCAAT 59.513 38.462 0.00 0.00 32.08 3.16
4323 4559 5.820423 CGGAACTTACAACATCCATATCCAA 59.180 40.000 0.00 0.00 32.08 3.53
4324 4560 5.104693 ACGGAACTTACAACATCCATATCCA 60.105 40.000 0.00 0.00 32.08 3.41
4325 4561 5.236478 CACGGAACTTACAACATCCATATCC 59.764 44.000 0.00 0.00 32.08 2.59
4326 4562 5.277345 GCACGGAACTTACAACATCCATATC 60.277 44.000 0.00 0.00 32.08 1.63
4327 4563 4.574828 GCACGGAACTTACAACATCCATAT 59.425 41.667 0.00 0.00 32.08 1.78
4328 4564 3.936453 GCACGGAACTTACAACATCCATA 59.064 43.478 0.00 0.00 32.08 2.74
4329 4565 2.747446 GCACGGAACTTACAACATCCAT 59.253 45.455 0.00 0.00 32.08 3.41
4330 4566 2.147958 GCACGGAACTTACAACATCCA 58.852 47.619 0.00 0.00 32.08 3.41
4331 4567 2.147958 TGCACGGAACTTACAACATCC 58.852 47.619 0.00 0.00 0.00 3.51
4332 4568 3.889196 TTGCACGGAACTTACAACATC 57.111 42.857 0.00 0.00 0.00 3.06
4333 4569 4.640789 TTTTGCACGGAACTTACAACAT 57.359 36.364 0.00 0.00 0.00 2.71
4334 4570 4.436242 TTTTTGCACGGAACTTACAACA 57.564 36.364 0.00 0.00 0.00 3.33
4335 4571 4.443063 GGATTTTTGCACGGAACTTACAAC 59.557 41.667 0.00 0.00 0.00 3.32
4336 4572 4.098044 TGGATTTTTGCACGGAACTTACAA 59.902 37.500 0.00 0.00 0.00 2.41
4337 4573 3.632604 TGGATTTTTGCACGGAACTTACA 59.367 39.130 0.00 0.00 0.00 2.41
4338 4574 4.231718 TGGATTTTTGCACGGAACTTAC 57.768 40.909 0.00 0.00 0.00 2.34
4339 4575 6.767524 ATATGGATTTTTGCACGGAACTTA 57.232 33.333 0.00 0.00 0.00 2.24
4340 4576 5.659440 ATATGGATTTTTGCACGGAACTT 57.341 34.783 0.00 0.00 0.00 2.66
4341 4577 6.738114 CATATATGGATTTTTGCACGGAACT 58.262 36.000 4.68 0.00 0.00 3.01
4342 4578 6.991485 CATATATGGATTTTTGCACGGAAC 57.009 37.500 4.68 0.00 0.00 3.62
4368 4604 0.248458 AACAAAACGAGGCACGCAAG 60.248 50.000 3.72 0.00 46.94 4.01
4369 4605 0.524392 CAACAAAACGAGGCACGCAA 60.524 50.000 3.72 0.00 46.94 4.85
4370 4606 1.063327 CAACAAAACGAGGCACGCA 59.937 52.632 3.72 0.00 46.94 5.24
4371 4607 0.928451 GTCAACAAAACGAGGCACGC 60.928 55.000 3.72 0.00 46.94 5.34
4373 4609 0.030235 GGGTCAACAAAACGAGGCAC 59.970 55.000 0.00 0.00 0.00 5.01
4374 4610 1.440938 CGGGTCAACAAAACGAGGCA 61.441 55.000 0.00 0.00 0.00 4.75
4375 4611 1.281656 CGGGTCAACAAAACGAGGC 59.718 57.895 0.00 0.00 0.00 4.70
4376 4612 1.281656 GCGGGTCAACAAAACGAGG 59.718 57.895 0.00 0.00 0.00 4.63
4377 4613 1.164041 AGGCGGGTCAACAAAACGAG 61.164 55.000 0.00 0.00 0.00 4.18
4378 4614 0.748729 AAGGCGGGTCAACAAAACGA 60.749 50.000 0.00 0.00 0.00 3.85
4379 4615 0.101579 AAAGGCGGGTCAACAAAACG 59.898 50.000 0.00 0.00 0.00 3.60
4380 4616 2.159156 AGAAAAGGCGGGTCAACAAAAC 60.159 45.455 0.00 0.00 0.00 2.43
4381 4617 2.104170 AGAAAAGGCGGGTCAACAAAA 58.896 42.857 0.00 0.00 0.00 2.44
4382 4618 1.770294 AGAAAAGGCGGGTCAACAAA 58.230 45.000 0.00 0.00 0.00 2.83
4383 4619 1.770294 AAGAAAAGGCGGGTCAACAA 58.230 45.000 0.00 0.00 0.00 2.83
4384 4620 1.770294 AAAGAAAAGGCGGGTCAACA 58.230 45.000 0.00 0.00 0.00 3.33
4385 4621 2.882927 AAAAGAAAAGGCGGGTCAAC 57.117 45.000 0.00 0.00 0.00 3.18
4386 4622 2.101750 GGAAAAAGAAAAGGCGGGTCAA 59.898 45.455 0.00 0.00 0.00 3.18
4387 4623 1.684450 GGAAAAAGAAAAGGCGGGTCA 59.316 47.619 0.00 0.00 0.00 4.02
4388 4624 1.961394 AGGAAAAAGAAAAGGCGGGTC 59.039 47.619 0.00 0.00 0.00 4.46
4389 4625 2.082140 AGGAAAAAGAAAAGGCGGGT 57.918 45.000 0.00 0.00 0.00 5.28
4390 4626 3.469008 AAAGGAAAAAGAAAAGGCGGG 57.531 42.857 0.00 0.00 0.00 6.13
4391 4627 4.634004 ACAAAAAGGAAAAAGAAAAGGCGG 59.366 37.500 0.00 0.00 0.00 6.13
4392 4628 5.350091 TGACAAAAAGGAAAAAGAAAAGGCG 59.650 36.000 0.00 0.00 0.00 5.52
4393 4629 6.675486 GCTGACAAAAAGGAAAAAGAAAAGGC 60.675 38.462 0.00 0.00 0.00 4.35
4394 4630 6.183360 GGCTGACAAAAAGGAAAAAGAAAAGG 60.183 38.462 0.00 0.00 0.00 3.11
4395 4631 6.595326 AGGCTGACAAAAAGGAAAAAGAAAAG 59.405 34.615 0.00 0.00 0.00 2.27
4396 4632 6.371271 CAGGCTGACAAAAAGGAAAAAGAAAA 59.629 34.615 9.42 0.00 0.00 2.29
4397 4633 5.874261 CAGGCTGACAAAAAGGAAAAAGAAA 59.126 36.000 9.42 0.00 0.00 2.52
4398 4634 5.186797 TCAGGCTGACAAAAAGGAAAAAGAA 59.813 36.000 14.43 0.00 0.00 2.52
4399 4635 4.709397 TCAGGCTGACAAAAAGGAAAAAGA 59.291 37.500 14.43 0.00 0.00 2.52
4400 4636 4.805719 GTCAGGCTGACAAAAAGGAAAAAG 59.194 41.667 36.14 0.00 46.22 2.27
4401 4637 4.754322 GTCAGGCTGACAAAAAGGAAAAA 58.246 39.130 36.14 0.52 46.22 1.94
4402 4638 4.385358 GTCAGGCTGACAAAAAGGAAAA 57.615 40.909 36.14 0.99 46.22 2.29
4414 4650 0.680280 GGGAGTACGAGTCAGGCTGA 60.680 60.000 14.43 14.43 0.00 4.26
4415 4651 0.681564 AGGGAGTACGAGTCAGGCTG 60.682 60.000 8.58 8.58 0.00 4.85
4416 4652 0.394625 GAGGGAGTACGAGTCAGGCT 60.395 60.000 0.00 0.00 0.00 4.58
4417 4653 0.394625 AGAGGGAGTACGAGTCAGGC 60.395 60.000 0.00 0.00 0.00 4.85
4418 4654 1.340211 ACAGAGGGAGTACGAGTCAGG 60.340 57.143 0.00 0.00 0.00 3.86
4419 4655 2.116827 ACAGAGGGAGTACGAGTCAG 57.883 55.000 0.00 0.00 0.00 3.51
4420 4656 3.708403 TTACAGAGGGAGTACGAGTCA 57.292 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.