Multiple sequence alignment - TraesCS7A01G403100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G403100 chr7A 100.000 9411 0 0 1 9411 583015622 583025032 0.000000e+00 17379
1 TraesCS7A01G403100 chr7A 92.644 3453 222 21 5970 9409 315495737 315492304 0.000000e+00 4940
2 TraesCS7A01G403100 chr7A 92.272 3455 232 16 2689 6135 315499166 315495739 0.000000e+00 4868
3 TraesCS7A01G403100 chr2A 93.574 9430 546 36 1 9409 378106061 378115451 0.000000e+00 14002
4 TraesCS7A01G403100 chr2A 92.743 5870 358 38 3558 9409 434161066 434155247 0.000000e+00 8418
5 TraesCS7A01G403100 chr2A 90.518 2742 198 24 1 2686 434164628 434161893 0.000000e+00 3567
6 TraesCS7A01G403100 chr2A 83.546 863 112 16 2684 3543 116992991 116992156 0.000000e+00 780
7 TraesCS7A01G403100 chr2A 83.688 846 111 15 2683 3526 434158085 434157265 0.000000e+00 773
8 TraesCS7A01G403100 chr2A 82.060 864 129 14 2683 3545 204483186 204484024 0.000000e+00 713
9 TraesCS7A01G403100 chr2D 90.357 6170 511 54 1 6126 273049680 273055809 0.000000e+00 8021
10 TraesCS7A01G403100 chr2D 92.557 3453 219 23 5970 9409 273055810 273059237 0.000000e+00 4918
11 TraesCS7A01G403100 chr2D 92.690 2353 154 10 339 2686 412325329 412327668 0.000000e+00 3376
12 TraesCS7A01G403100 chr5B 87.192 7175 725 105 2298 9409 139268514 139261471 0.000000e+00 7980
13 TraesCS7A01G403100 chr5D 90.504 5834 489 49 339 6135 419884127 419889932 0.000000e+00 7644
14 TraesCS7A01G403100 chr5D 89.733 2883 242 35 339 3196 211806805 211803952 0.000000e+00 3635
15 TraesCS7A01G403100 chr7D 90.413 5841 467 58 334 6135 370470965 370465179 0.000000e+00 7598
16 TraesCS7A01G403100 chr7D 92.436 3464 213 34 5970 9409 234393601 234397039 0.000000e+00 4900
17 TraesCS7A01G403100 chr7D 92.749 2303 128 17 1 2276 588649430 588647140 0.000000e+00 3291
18 TraesCS7A01G403100 chr7D 91.717 664 29 11 1 640 387289940 387290601 0.000000e+00 898
19 TraesCS7A01G403100 chr3D 89.368 5380 465 74 339 5678 364948995 364943683 0.000000e+00 6667
20 TraesCS7A01G403100 chr3D 92.802 3654 221 23 339 3985 323148435 323152053 0.000000e+00 5252
21 TraesCS7A01G403100 chr3D 91.429 3465 230 32 5970 9409 323154524 323157946 0.000000e+00 4691
22 TraesCS7A01G403100 chr3D 92.191 2305 140 20 1 2276 421477536 421479829 0.000000e+00 3223
23 TraesCS7A01G403100 chr3D 93.633 2026 115 10 7386 9409 428373413 428375426 0.000000e+00 3014
24 TraesCS7A01G403100 chr1D 90.747 3988 309 46 2183 6135 238006162 238010124 0.000000e+00 5265
25 TraesCS7A01G403100 chr1D 91.621 3461 232 36 5970 9409 238010292 238013715 0.000000e+00 4732
26 TraesCS7A01G403100 chr1D 92.485 2302 133 19 3 2276 296766256 296768545 0.000000e+00 3256
27 TraesCS7A01G403100 chr4D 92.068 3656 257 19 339 3985 144585324 144581693 0.000000e+00 5114
28 TraesCS7A01G403100 chr4D 89.486 3757 307 44 5664 9409 168993879 168990200 0.000000e+00 4669
29 TraesCS7A01G403100 chr4D 89.670 2972 260 30 339 3288 285436769 285433823 0.000000e+00 3744
30 TraesCS7A01G403100 chr4D 91.586 2068 121 20 1 2027 426274135 426272080 0.000000e+00 2806
31 TraesCS7A01G403100 chr6A 91.156 3460 243 37 5970 9409 446428248 446431664 0.000000e+00 4636
32 TraesCS7A01G403100 chr6A 91.027 2463 199 16 6953 9409 175158608 175156162 0.000000e+00 3304
33 TraesCS7A01G403100 chr1A 90.098 3555 307 27 2600 6132 379608948 379612479 0.000000e+00 4573
34 TraesCS7A01G403100 chr6D 93.021 2307 127 8 1 2276 255992568 255994871 0.000000e+00 3338
35 TraesCS7A01G403100 chr6D 92.262 2184 140 17 5970 8149 186932693 186930535 0.000000e+00 3070
36 TraesCS7A01G403100 chr5A 93.182 1760 114 5 6680 8438 133829569 133831323 0.000000e+00 2580
37 TraesCS7A01G403100 chr5A 91.370 927 50 9 1 897 389416115 389417041 0.000000e+00 1242
38 TraesCS7A01G403100 chr2B 83.121 865 119 12 2683 3545 770960575 770959736 0.000000e+00 763
39 TraesCS7A01G403100 chr2B 89.474 437 37 7 5970 6398 497415283 497415718 2.310000e-150 544
40 TraesCS7A01G403100 chr3B 81.618 865 132 12 2683 3545 246991554 246990715 0.000000e+00 691


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G403100 chr7A 583015622 583025032 9410 False 17379.000000 17379 100.0000 1 9411 1 chr7A.!!$F1 9410
1 TraesCS7A01G403100 chr7A 315492304 315499166 6862 True 4904.000000 4940 92.4580 2689 9409 2 chr7A.!!$R1 6720
2 TraesCS7A01G403100 chr2A 378106061 378115451 9390 False 14002.000000 14002 93.5740 1 9409 1 chr2A.!!$F2 9408
3 TraesCS7A01G403100 chr2A 434155247 434164628 9381 True 4252.666667 8418 88.9830 1 9409 3 chr2A.!!$R2 9408
4 TraesCS7A01G403100 chr2A 116992156 116992991 835 True 780.000000 780 83.5460 2684 3543 1 chr2A.!!$R1 859
5 TraesCS7A01G403100 chr2A 204483186 204484024 838 False 713.000000 713 82.0600 2683 3545 1 chr2A.!!$F1 862
6 TraesCS7A01G403100 chr2D 273049680 273059237 9557 False 6469.500000 8021 91.4570 1 9409 2 chr2D.!!$F2 9408
7 TraesCS7A01G403100 chr2D 412325329 412327668 2339 False 3376.000000 3376 92.6900 339 2686 1 chr2D.!!$F1 2347
8 TraesCS7A01G403100 chr5B 139261471 139268514 7043 True 7980.000000 7980 87.1920 2298 9409 1 chr5B.!!$R1 7111
9 TraesCS7A01G403100 chr5D 419884127 419889932 5805 False 7644.000000 7644 90.5040 339 6135 1 chr5D.!!$F1 5796
10 TraesCS7A01G403100 chr5D 211803952 211806805 2853 True 3635.000000 3635 89.7330 339 3196 1 chr5D.!!$R1 2857
11 TraesCS7A01G403100 chr7D 370465179 370470965 5786 True 7598.000000 7598 90.4130 334 6135 1 chr7D.!!$R1 5801
12 TraesCS7A01G403100 chr7D 234393601 234397039 3438 False 4900.000000 4900 92.4360 5970 9409 1 chr7D.!!$F1 3439
13 TraesCS7A01G403100 chr7D 588647140 588649430 2290 True 3291.000000 3291 92.7490 1 2276 1 chr7D.!!$R2 2275
14 TraesCS7A01G403100 chr7D 387289940 387290601 661 False 898.000000 898 91.7170 1 640 1 chr7D.!!$F2 639
15 TraesCS7A01G403100 chr3D 364943683 364948995 5312 True 6667.000000 6667 89.3680 339 5678 1 chr3D.!!$R1 5339
16 TraesCS7A01G403100 chr3D 323148435 323157946 9511 False 4971.500000 5252 92.1155 339 9409 2 chr3D.!!$F3 9070
17 TraesCS7A01G403100 chr3D 421477536 421479829 2293 False 3223.000000 3223 92.1910 1 2276 1 chr3D.!!$F1 2275
18 TraesCS7A01G403100 chr3D 428373413 428375426 2013 False 3014.000000 3014 93.6330 7386 9409 1 chr3D.!!$F2 2023
19 TraesCS7A01G403100 chr1D 238006162 238013715 7553 False 4998.500000 5265 91.1840 2183 9409 2 chr1D.!!$F2 7226
20 TraesCS7A01G403100 chr1D 296766256 296768545 2289 False 3256.000000 3256 92.4850 3 2276 1 chr1D.!!$F1 2273
21 TraesCS7A01G403100 chr4D 144581693 144585324 3631 True 5114.000000 5114 92.0680 339 3985 1 chr4D.!!$R1 3646
22 TraesCS7A01G403100 chr4D 168990200 168993879 3679 True 4669.000000 4669 89.4860 5664 9409 1 chr4D.!!$R2 3745
23 TraesCS7A01G403100 chr4D 285433823 285436769 2946 True 3744.000000 3744 89.6700 339 3288 1 chr4D.!!$R3 2949
24 TraesCS7A01G403100 chr4D 426272080 426274135 2055 True 2806.000000 2806 91.5860 1 2027 1 chr4D.!!$R4 2026
25 TraesCS7A01G403100 chr6A 446428248 446431664 3416 False 4636.000000 4636 91.1560 5970 9409 1 chr6A.!!$F1 3439
26 TraesCS7A01G403100 chr6A 175156162 175158608 2446 True 3304.000000 3304 91.0270 6953 9409 1 chr6A.!!$R1 2456
27 TraesCS7A01G403100 chr1A 379608948 379612479 3531 False 4573.000000 4573 90.0980 2600 6132 1 chr1A.!!$F1 3532
28 TraesCS7A01G403100 chr6D 255992568 255994871 2303 False 3338.000000 3338 93.0210 1 2276 1 chr6D.!!$F1 2275
29 TraesCS7A01G403100 chr6D 186930535 186932693 2158 True 3070.000000 3070 92.2620 5970 8149 1 chr6D.!!$R1 2179
30 TraesCS7A01G403100 chr5A 133829569 133831323 1754 False 2580.000000 2580 93.1820 6680 8438 1 chr5A.!!$F1 1758
31 TraesCS7A01G403100 chr5A 389416115 389417041 926 False 1242.000000 1242 91.3700 1 897 1 chr5A.!!$F2 896
32 TraesCS7A01G403100 chr2B 770959736 770960575 839 True 763.000000 763 83.1210 2683 3545 1 chr2B.!!$R1 862
33 TraesCS7A01G403100 chr3B 246990715 246991554 839 True 691.000000 691 81.6180 2683 3545 1 chr3B.!!$R1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 290 0.034059 AAACCACGAGGCAGACAGAG 59.966 55.0 0.00 0.0 39.06 3.35 F
291 293 0.389166 CCACGAGGCAGACAGAGAAC 60.389 60.0 0.00 0.0 0.00 3.01 F
1156 1251 0.539986 GGGAGCTATTGACCCGTTCA 59.460 55.0 0.00 0.0 34.03 3.18 F
1627 1757 0.182537 CAAGTGTGGGGGAACTGACA 59.817 55.0 0.00 0.0 0.00 3.58 F
3003 3273 0.044092 TGCCCCTTCCATCTCCACTA 59.956 55.0 0.00 0.0 0.00 2.74 F
3205 3475 0.473326 GGCAAGGAGATGCTGGAGAT 59.527 55.0 0.00 0.0 45.68 2.75 F
4203 4474 0.100682 GTCGACATTCAGCGCCTCTA 59.899 55.0 11.55 0.0 0.00 2.43 F
5491 5765 0.030638 GGTCATGAGAGAGAGCGAGC 59.969 60.0 0.00 0.0 0.00 5.03 F
5610 5885 0.320421 GACTAAACCCAGAGCGCACA 60.320 55.0 11.47 0.0 0.00 4.57 F
6738 7327 0.321210 CTACAACCATGCACCCGACA 60.321 55.0 0.00 0.0 0.00 4.35 F
6974 16220 0.528901 CAACCCTGTCGACGTTCACA 60.529 55.0 11.62 0.0 0.00 3.58 F
8203 17527 0.759346 GCGTCATCCACCCTTCCTAT 59.241 55.0 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1171 1266 0.106519 AGCTCTGGTTGCTGTTGGTT 60.107 50.000 0.00 0.00 39.56 3.67 R
1173 1268 0.313043 CAAGCTCTGGTTGCTGTTGG 59.687 55.000 0.00 0.00 41.03 3.77 R
2977 3247 0.033208 GATGGAAGGGGCAATGGTGA 60.033 55.000 0.00 0.00 0.00 4.02 R
3125 3395 0.250597 TCTCTCCGAGGACGTGAACA 60.251 55.000 0.00 0.00 37.88 3.18 R
4184 4455 0.100682 TAGAGGCGCTGAATGTCGAC 59.899 55.000 9.11 9.11 0.00 4.20 R
4298 4569 0.107410 TTGTGGTCTTCCTGCGTGTT 60.107 50.000 0.00 0.00 34.23 3.32 R
5559 5834 0.696826 TCGAGGGGGCTCTAGACCTA 60.697 60.000 0.96 0.00 44.77 3.08 R
7040 16286 0.247460 CTGGTGCAGACGATCTCCAA 59.753 55.000 0.00 0.00 32.44 3.53 R
7074 16320 0.247460 CCTGCTCATCACTTCACCGA 59.753 55.000 0.00 0.00 0.00 4.69 R
8263 17590 0.390866 CGATGAGCTTGTCTGGCAGT 60.391 55.000 15.27 0.00 0.00 4.40 R
8388 17715 2.664851 CCGCGAAGTTGCAGTGGA 60.665 61.111 8.23 0.00 37.73 4.02 R
9043 18389 2.957402 ATGTGAACTGAAGCTTCCCA 57.043 45.000 23.42 12.83 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 130 5.471456 GGAACGAGCATGAGAAATGGATATT 59.529 40.000 0.00 0.00 0.00 1.28
175 177 3.670359 CGCCAAAATGACATCGACACAAT 60.670 43.478 0.00 0.00 0.00 2.71
214 216 5.625150 ACTATGTGCTCAAGAGGAACTTTT 58.375 37.500 0.00 0.00 41.55 2.27
256 258 0.953960 CCGGTTTGTCAGCCAGGTAC 60.954 60.000 0.00 0.00 0.00 3.34
275 277 0.307760 CACTCCTGCGTCAAAACCAC 59.692 55.000 0.00 0.00 0.00 4.16
276 278 1.157870 ACTCCTGCGTCAAAACCACG 61.158 55.000 0.00 0.00 40.35 4.94
277 279 0.878523 CTCCTGCGTCAAAACCACGA 60.879 55.000 0.00 0.00 39.75 4.35
278 280 0.878523 TCCTGCGTCAAAACCACGAG 60.879 55.000 0.00 0.00 39.75 4.18
279 281 1.569493 CTGCGTCAAAACCACGAGG 59.431 57.895 0.00 0.00 39.75 4.63
280 282 2.251371 GCGTCAAAACCACGAGGC 59.749 61.111 0.00 0.00 39.75 4.70
281 283 2.539338 GCGTCAAAACCACGAGGCA 61.539 57.895 0.00 0.00 41.47 4.75
282 284 1.569493 CGTCAAAACCACGAGGCAG 59.431 57.895 0.00 0.00 39.75 4.85
283 285 0.878523 CGTCAAAACCACGAGGCAGA 60.879 55.000 0.00 0.00 39.75 4.26
284 286 0.586802 GTCAAAACCACGAGGCAGAC 59.413 55.000 0.00 0.00 39.06 3.51
285 287 0.179234 TCAAAACCACGAGGCAGACA 59.821 50.000 0.00 0.00 39.06 3.41
286 288 0.588252 CAAAACCACGAGGCAGACAG 59.412 55.000 0.00 0.00 39.06 3.51
287 289 0.468226 AAAACCACGAGGCAGACAGA 59.532 50.000 0.00 0.00 39.06 3.41
288 290 0.034059 AAACCACGAGGCAGACAGAG 59.966 55.000 0.00 0.00 39.06 3.35
289 291 0.827925 AACCACGAGGCAGACAGAGA 60.828 55.000 0.00 0.00 39.06 3.10
290 292 0.827925 ACCACGAGGCAGACAGAGAA 60.828 55.000 0.00 0.00 39.06 2.87
291 293 0.389166 CCACGAGGCAGACAGAGAAC 60.389 60.000 0.00 0.00 0.00 3.01
292 294 0.600557 CACGAGGCAGACAGAGAACT 59.399 55.000 0.00 0.00 0.00 3.01
293 295 1.813178 CACGAGGCAGACAGAGAACTA 59.187 52.381 0.00 0.00 0.00 2.24
294 296 2.229062 CACGAGGCAGACAGAGAACTAA 59.771 50.000 0.00 0.00 0.00 2.24
526 604 0.671781 GAGCACACTCTTCACGGCAT 60.672 55.000 0.00 0.00 40.03 4.40
586 664 1.404035 ACAACCCGCAAAAACTGTCTC 59.596 47.619 0.00 0.00 0.00 3.36
790 882 2.430956 GTATTTTCTGCGTGCATGTCG 58.569 47.619 7.93 0.00 0.00 4.35
871 963 0.877071 CAGCAAACGCCTGAACATCT 59.123 50.000 0.00 0.00 32.03 2.90
884 976 4.334759 CCTGAACATCTAGCCAACATTCAG 59.665 45.833 0.00 0.00 40.68 3.02
900 992 2.168326 TCAGCAGAAATGACTTGCGA 57.832 45.000 0.00 0.00 0.00 5.10
946 1038 4.098960 CCCAATACTGCATTGAAAGCTCAT 59.901 41.667 2.15 0.00 45.99 2.90
1038 1133 3.311322 TCGTCATGGACAAACTTGAACAC 59.689 43.478 0.00 0.00 32.09 3.32
1127 1222 7.276658 GGATATTGCTACAATGTTATCCGAGAG 59.723 40.741 5.58 0.00 0.00 3.20
1156 1251 0.539986 GGGAGCTATTGACCCGTTCA 59.460 55.000 0.00 0.00 34.03 3.18
1254 1349 1.607628 GATCATGAGCTTGATGGTGCC 59.392 52.381 5.62 0.00 36.48 5.01
1288 1383 5.393135 CGACATGACAACAGTACATCCTACT 60.393 44.000 0.00 0.00 0.00 2.57
1627 1757 0.182537 CAAGTGTGGGGGAACTGACA 59.817 55.000 0.00 0.00 0.00 3.58
1698 1828 2.092103 ACAGAAACAGGGCAAGGTACAA 60.092 45.455 0.00 0.00 0.00 2.41
1743 1874 5.694006 AGACGATGAAGAAGAACAGTTTGAG 59.306 40.000 0.00 0.00 0.00 3.02
1752 1883 6.595682 AGAAGAACAGTTTGAGGAGAATGAA 58.404 36.000 0.00 0.00 0.00 2.57
1820 1951 6.289064 AGGAAACTAAAACTGACGATGAAGT 58.711 36.000 0.00 0.00 40.61 3.01
1824 1955 6.686130 ACTAAAACTGACGATGAAGTTACG 57.314 37.500 0.00 0.00 35.60 3.18
1828 1959 4.761235 ACTGACGATGAAGTTACGAAGA 57.239 40.909 0.00 0.00 0.00 2.87
1837 1968 5.013568 TGAAGTTACGAAGACTCAACCAA 57.986 39.130 0.00 0.00 0.00 3.67
1988 2133 7.654520 CACAATGAGGAAACATTTCAGAAACAT 59.345 33.333 0.00 0.00 38.25 2.71
2005 2151 6.198966 CAGAAACATTGTTGCTACCAAAACTC 59.801 38.462 9.76 0.00 31.68 3.01
2019 2165 7.041712 GCTACCAAAACTCATCTAGCTTTATCC 60.042 40.741 0.00 0.00 0.00 2.59
2021 2167 7.406104 ACCAAAACTCATCTAGCTTTATCCTT 58.594 34.615 0.00 0.00 0.00 3.36
2034 2180 5.694006 AGCTTTATCCTTGATTTCTCGATCG 59.306 40.000 9.36 9.36 0.00 3.69
2347 2514 2.159043 GCTATGTCTGCTTCTGCCAGTA 60.159 50.000 0.00 0.00 38.71 2.74
2723 2906 0.396435 TGAGACGTGCAAGTGGGATT 59.604 50.000 10.87 0.00 0.00 3.01
2724 2907 1.202758 TGAGACGTGCAAGTGGGATTT 60.203 47.619 10.87 0.00 0.00 2.17
2725 2908 2.037902 TGAGACGTGCAAGTGGGATTTA 59.962 45.455 10.87 0.00 0.00 1.40
2726 2909 3.071479 GAGACGTGCAAGTGGGATTTAA 58.929 45.455 10.87 0.00 0.00 1.52
2756 3025 7.539436 TCATAAGTACAGCTTGACAAGACTAG 58.461 38.462 19.51 11.52 38.05 2.57
2765 3034 3.650070 TGACAAGACTAGTCAGTGCAG 57.350 47.619 24.44 9.57 40.80 4.41
2778 3047 1.680735 CAGTGCAGCAGTAAAAACCCA 59.319 47.619 1.26 0.00 0.00 4.51
2782 3051 2.961741 TGCAGCAGTAAAAACCCATTGA 59.038 40.909 0.00 0.00 0.00 2.57
2795 3064 2.081462 CCCATTGACTTGGACGGTTAC 58.919 52.381 0.00 0.00 39.25 2.50
2802 3071 3.640029 TGACTTGGACGGTTACTTCTTCT 59.360 43.478 0.00 0.00 0.00 2.85
2805 3074 4.220163 ACTTGGACGGTTACTTCTTCTAGG 59.780 45.833 0.00 0.00 0.00 3.02
2811 3080 2.570302 GGTTACTTCTTCTAGGCCACCA 59.430 50.000 5.01 0.00 0.00 4.17
2814 3083 0.253327 CTTCTTCTAGGCCACCACCC 59.747 60.000 5.01 0.00 0.00 4.61
2882 3151 4.373116 CGACCCCCACGACCACTG 62.373 72.222 0.00 0.00 0.00 3.66
2924 3194 3.371097 CTCCCACACATCCCCGTCG 62.371 68.421 0.00 0.00 0.00 5.12
2938 3208 1.011684 CGTCGACGCACTGCAAAAA 60.012 52.632 26.59 0.00 0.00 1.94
2939 3209 0.384230 CGTCGACGCACTGCAAAAAT 60.384 50.000 26.59 0.00 0.00 1.82
2940 3210 1.136474 CGTCGACGCACTGCAAAAATA 60.136 47.619 26.59 0.00 0.00 1.40
2941 3211 2.660631 CGTCGACGCACTGCAAAAATAA 60.661 45.455 26.59 0.00 0.00 1.40
2944 3214 2.324860 GACGCACTGCAAAAATAACCC 58.675 47.619 1.11 0.00 0.00 4.11
2945 3215 1.335506 ACGCACTGCAAAAATAACCCG 60.336 47.619 1.11 0.00 0.00 5.28
2947 3217 2.749776 GCACTGCAAAAATAACCCGTT 58.250 42.857 0.00 0.00 0.00 4.44
2948 3218 2.474735 GCACTGCAAAAATAACCCGTTG 59.525 45.455 0.00 0.00 0.00 4.10
2966 3236 0.820226 TGTCTTCCATCTCTGCCTCG 59.180 55.000 0.00 0.00 0.00 4.63
2970 3240 1.205655 CTTCCATCTCTGCCTCGTTCA 59.794 52.381 0.00 0.00 0.00 3.18
2973 3243 1.338105 CCATCTCTGCCTCGTTCACAA 60.338 52.381 0.00 0.00 0.00 3.33
2977 3247 3.476552 TCTCTGCCTCGTTCACAAAAAT 58.523 40.909 0.00 0.00 0.00 1.82
2983 3253 3.305335 GCCTCGTTCACAAAAATCACCAT 60.305 43.478 0.00 0.00 0.00 3.55
3003 3273 0.044092 TGCCCCTTCCATCTCCACTA 59.956 55.000 0.00 0.00 0.00 2.74
3019 3289 4.196193 TCCACTACAGACAAACCACAAAG 58.804 43.478 0.00 0.00 0.00 2.77
3029 3299 5.104259 ACAAACCACAAAGTTCTCTCTCT 57.896 39.130 0.00 0.00 0.00 3.10
3041 3311 1.203112 TCTCTCTCTCAAGCCCACAGT 60.203 52.381 0.00 0.00 0.00 3.55
3046 3316 3.535629 CTCAAGCCCACAGTCGCCA 62.536 63.158 0.00 0.00 0.00 5.69
3092 3362 1.105167 CCGCCAAGCATCATCATGGT 61.105 55.000 0.00 0.00 42.81 3.55
3101 3371 2.739609 GCATCATCATGGTGAGACGTCA 60.740 50.000 19.50 0.00 27.35 4.35
3102 3372 2.947448 TCATCATGGTGAGACGTCAG 57.053 50.000 19.50 0.00 31.53 3.51
3123 3393 0.954452 CAAGACCAGCAACCTTGTCC 59.046 55.000 0.00 0.00 35.03 4.02
3125 3395 0.773644 AGACCAGCAACCTTGTCCAT 59.226 50.000 0.00 0.00 35.03 3.41
3136 3406 1.270839 CCTTGTCCATGTTCACGTCCT 60.271 52.381 0.00 0.00 0.00 3.85
3140 3410 0.896479 TCCATGTTCACGTCCTCGGA 60.896 55.000 0.00 0.00 41.85 4.55
3158 3428 0.858135 GAGAGAAGCGCGAGTACACG 60.858 60.000 12.10 8.44 0.00 4.49
3160 3430 0.858135 GAGAAGCGCGAGTACACGAG 60.858 60.000 17.12 14.29 36.29 4.18
3164 3434 2.150837 GCGCGAGTACACGAGAACC 61.151 63.158 19.30 0.00 35.31 3.62
3187 3457 0.921896 ACAGGGGTTGATCTCCATGG 59.078 55.000 4.97 4.97 39.70 3.66
3205 3475 0.473326 GGCAAGGAGATGCTGGAGAT 59.527 55.000 0.00 0.00 45.68 2.75
3207 3477 1.417145 GCAAGGAGATGCTGGAGATCT 59.583 52.381 0.00 0.00 43.06 2.75
3209 3479 3.731089 CAAGGAGATGCTGGAGATCTTC 58.269 50.000 0.00 0.00 29.97 2.87
3215 3485 1.273759 TGCTGGAGATCTTCTGCACT 58.726 50.000 26.80 0.00 39.98 4.40
3251 3521 1.265635 GTCGACGAGATGATCTCCAGG 59.734 57.143 16.26 5.67 40.34 4.45
3276 3546 4.722700 GGAAGGCTGGCGGCAAGA 62.723 66.667 21.68 0.00 44.01 3.02
3278 3548 2.036256 AAGGCTGGCGGCAAGATT 59.964 55.556 21.68 4.70 44.01 2.40
3279 3549 1.997928 GAAGGCTGGCGGCAAGATTC 61.998 60.000 21.68 12.93 44.01 2.52
3280 3550 2.751436 GGCTGGCGGCAAGATTCA 60.751 61.111 21.68 0.00 44.01 2.57
3293 3563 4.999950 GGCAAGATTCATAAGATCATCGGT 59.000 41.667 0.00 0.00 0.00 4.69
3343 3613 4.119363 TCCCCAGATGGCAGCAGC 62.119 66.667 5.19 0.00 41.10 5.25
3391 3661 2.054458 TGGTGTACCACATCGCAGT 58.946 52.632 0.00 0.00 42.01 4.40
3529 3800 5.278957 GGTTTGTGAAAAGTGGATGCACTAT 60.279 40.000 21.06 12.57 34.56 2.12
3556 3827 9.534565 TGCATTTTCTCAAGTAGATACACTATC 57.465 33.333 0.00 0.00 33.05 2.08
3580 3851 6.867816 TCAATGTATTTTTGAACCTGATGCAC 59.132 34.615 0.00 0.00 30.44 4.57
3582 3853 7.701539 ATGTATTTTTGAACCTGATGCACTA 57.298 32.000 0.00 0.00 0.00 2.74
3627 3898 7.915293 TGCGGAAGATTAATTTCTGAAGTTA 57.085 32.000 16.73 1.71 33.67 2.24
3645 3916 8.961294 TGAAGTTAATCGACTAGTGTAGTTTC 57.039 34.615 0.00 0.00 39.59 2.78
3652 3923 6.630444 TCGACTAGTGTAGTTTCTGAACTT 57.370 37.500 0.00 0.00 43.48 2.66
3685 3956 7.199541 AGCGTAGTTTATGTACTCGATGTAT 57.800 36.000 0.00 0.00 33.23 2.29
3807 4078 9.173021 CACTGGTTATGTGTTATCCTATTCAAA 57.827 33.333 0.00 0.00 0.00 2.69
3863 4134 7.482743 CACATACAACATTGACTGAAACTATGC 59.517 37.037 0.00 0.00 0.00 3.14
3887 4158 9.225436 TGCATAATCCAAAAAGAAAAATAACCC 57.775 29.630 0.00 0.00 0.00 4.11
3898 4169 7.989416 AAGAAAAATAACCCGATGTACTTGA 57.011 32.000 0.00 0.00 0.00 3.02
3990 4261 7.013083 GCATCTACTTCATGGATTCATCACTTT 59.987 37.037 0.00 0.00 0.00 2.66
4060 4331 2.795329 TCAAAATGTCTCTCCCCTTGC 58.205 47.619 0.00 0.00 0.00 4.01
4157 4428 7.118390 GCTACAAAGAAAAGCTGAAGATGTCTA 59.882 37.037 0.00 0.00 33.40 2.59
4159 4430 7.220030 ACAAAGAAAAGCTGAAGATGTCTAGA 58.780 34.615 0.00 0.00 0.00 2.43
4179 4450 3.075882 AGATTGGAGATCAACCCCAACAA 59.924 43.478 9.90 0.00 42.08 2.83
4184 4455 2.484264 GAGATCAACCCCAACAAGTTCG 59.516 50.000 0.00 0.00 0.00 3.95
4203 4474 0.100682 GTCGACATTCAGCGCCTCTA 59.899 55.000 11.55 0.00 0.00 2.43
4244 4515 6.127703 CGGAAAAGAGTATGACTCCTTGACTA 60.128 42.308 3.00 0.00 46.18 2.59
4252 4523 4.350368 TGACTCCTTGACTAATGTTGCA 57.650 40.909 0.00 0.00 0.00 4.08
4267 4538 2.515523 GCAGCCAGCGTCATCCAT 60.516 61.111 0.00 0.00 0.00 3.41
4298 4569 4.828939 ACAAAGGCATGAAGAAGAACATCA 59.171 37.500 0.00 0.00 0.00 3.07
4319 4590 0.307760 CACGCAGGAAGACCACAAAC 59.692 55.000 0.00 0.00 38.94 2.93
4348 4619 4.269523 AGCCCGCTGCCAGACAAA 62.270 61.111 0.00 0.00 42.71 2.83
4373 4644 5.374071 TCATCAAGTACGCAGGACTAGATA 58.626 41.667 0.00 0.00 0.00 1.98
4381 4652 1.069364 GCAGGACTAGATACGTACGCC 60.069 57.143 16.72 5.64 0.00 5.68
4383 4654 0.110464 GGACTAGATACGTACGCCGC 60.110 60.000 16.72 4.36 41.42 6.53
4458 4729 2.032681 GCGGGAGGCTCACAACTT 59.967 61.111 18.39 0.00 39.11 2.66
4460 4731 1.674057 CGGGAGGCTCACAACTTCT 59.326 57.895 18.39 0.00 0.00 2.85
4477 4748 0.974010 TCTACGACCGCCCCTTTCAT 60.974 55.000 0.00 0.00 0.00 2.57
4479 4750 1.259142 TACGACCGCCCCTTTCATCA 61.259 55.000 0.00 0.00 0.00 3.07
4510 4781 4.282957 GGATGAAGATACATCAGAGCCTGA 59.717 45.833 7.26 7.26 45.68 3.86
4513 4784 5.449553 TGAAGATACATCAGAGCCTGACTA 58.550 41.667 7.00 1.86 43.63 2.59
4514 4785 6.073981 TGAAGATACATCAGAGCCTGACTAT 58.926 40.000 7.00 5.78 43.63 2.12
4526 4797 3.330701 AGCCTGACTATGTTTTCCTTCCA 59.669 43.478 0.00 0.00 0.00 3.53
4537 4808 1.691196 TTCCTTCCACTTGTGCTTGG 58.309 50.000 0.00 0.00 0.00 3.61
4579 4850 8.445275 TCAAATTAGTAGTTTGCTCTTGTTGA 57.555 30.769 12.08 0.00 36.69 3.18
4587 4858 4.105486 GTTTGCTCTTGTTGAGTTGAACC 58.895 43.478 0.00 0.00 44.41 3.62
4601 4872 8.391106 GTTGAGTTGAACCAGTATGATTATGTC 58.609 37.037 0.00 0.00 39.69 3.06
4751 5022 3.057946 GGAACTTTGTGGCTGCTCTAAAG 60.058 47.826 15.83 15.83 35.18 1.85
4769 5040 8.809478 GCTCTAAAGTACTAGTTATGAAGCAAC 58.191 37.037 0.00 0.00 0.00 4.17
4782 5053 4.466567 TGAAGCAACTAATCACACAACG 57.533 40.909 0.00 0.00 0.00 4.10
4787 5058 3.966218 GCAACTAATCACACAACGTTGTC 59.034 43.478 30.24 11.35 39.91 3.18
4801 5072 3.135994 ACGTTGTCCCATGTGTAGTTTC 58.864 45.455 0.00 0.00 0.00 2.78
4802 5073 3.135225 CGTTGTCCCATGTGTAGTTTCA 58.865 45.455 0.00 0.00 0.00 2.69
4851 5122 8.659925 AACATTGAAAACAATCAGCACAATTA 57.340 26.923 0.00 0.00 0.00 1.40
4866 5137 7.040478 TCAGCACAATTAGAGTTGCTTAACAAT 60.040 33.333 0.00 0.00 41.27 2.71
4870 5141 8.236586 CACAATTAGAGTTGCTTAACAATGCTA 58.763 33.333 0.00 0.00 41.27 3.49
4881 5153 6.695278 TGCTTAACAATGCTACAAAGTTGAAC 59.305 34.615 0.00 0.00 0.00 3.18
4914 5186 7.749808 TCTTAGTACTTCATGTAGTGTTCTCG 58.250 38.462 14.64 6.29 36.33 4.04
4939 5211 8.338259 CGTTCATATGTAGCTGCTAGAAAATTT 58.662 33.333 10.13 0.00 0.00 1.82
4974 5248 9.086336 CAAACAGAAAAAGTTAAGAAGCATCAA 57.914 29.630 0.00 0.00 0.00 2.57
4993 5267 4.213270 ATCAACACACACTTATGTTGGTCG 59.787 41.667 15.06 0.00 44.92 4.79
5004 5278 1.317613 TGTTGGTCGCTTGCAGATTT 58.682 45.000 0.00 0.00 0.00 2.17
5006 5280 2.483877 TGTTGGTCGCTTGCAGATTTAG 59.516 45.455 0.00 0.00 0.00 1.85
5033 5307 6.168389 TGACAGTACTAGTACACTTGATCGA 58.832 40.000 29.87 8.13 38.48 3.59
5037 5311 7.040892 ACAGTACTAGTACACTTGATCGAACAA 60.041 37.037 29.87 7.93 38.48 2.83
5136 5410 7.366847 ACATAAGTGCTACTATGAATGGACT 57.633 36.000 6.53 0.00 32.66 3.85
5143 5417 7.945109 AGTGCTACTATGAATGGACTATCAGTA 59.055 37.037 0.00 0.00 29.64 2.74
5153 5427 9.470399 TGAATGGACTATCAGTACAACTTAGTA 57.530 33.333 0.00 0.00 43.35 1.82
5251 5525 6.081872 AGAAGGCAAAGAACTCAAATGAAG 57.918 37.500 0.00 0.00 0.00 3.02
5254 5528 5.836347 AGGCAAAGAACTCAAATGAAGAAC 58.164 37.500 0.00 0.00 0.00 3.01
5259 5533 8.909671 GCAAAGAACTCAAATGAAGAACATTAG 58.090 33.333 0.00 0.00 46.90 1.73
5338 5612 7.159372 GGTGGAGTCAAGTACTAGATTCAAAA 58.841 38.462 0.00 0.00 39.07 2.44
5339 5613 7.117956 GGTGGAGTCAAGTACTAGATTCAAAAC 59.882 40.741 0.00 0.00 39.07 2.43
5340 5614 7.656137 GTGGAGTCAAGTACTAGATTCAAAACA 59.344 37.037 0.00 0.00 39.07 2.83
5341 5615 8.208224 TGGAGTCAAGTACTAGATTCAAAACAA 58.792 33.333 0.00 0.00 39.07 2.83
5342 5616 9.052759 GGAGTCAAGTACTAGATTCAAAACAAA 57.947 33.333 0.00 0.00 39.07 2.83
5343 5617 9.865484 GAGTCAAGTACTAGATTCAAAACAAAC 57.135 33.333 0.00 0.00 39.07 2.93
5344 5618 9.391006 AGTCAAGTACTAGATTCAAAACAAACA 57.609 29.630 0.00 0.00 36.36 2.83
5345 5619 9.997482 GTCAAGTACTAGATTCAAAACAAACAA 57.003 29.630 0.00 0.00 0.00 2.83
5369 5643 2.286365 AGAAAGAATTGACCGCCCAA 57.714 45.000 0.00 0.00 0.00 4.12
5375 5649 2.075355 AATTGACCGCCCAAGGACCA 62.075 55.000 0.00 0.00 34.73 4.02
5404 5678 4.461781 GGCCCTAACGATGCTAGATACTTA 59.538 45.833 0.00 0.00 0.00 2.24
5407 5681 6.927381 GCCCTAACGATGCTAGATACTTAAAA 59.073 38.462 0.00 0.00 0.00 1.52
5410 5684 8.851416 CCTAACGATGCTAGATACTTAAAATCG 58.149 37.037 0.00 0.00 40.96 3.34
5415 5689 6.156748 TGCTAGATACTTAAAATCGAGCCA 57.843 37.500 20.34 11.62 45.83 4.75
5421 5695 1.396996 CTTAAAATCGAGCCACGTGGG 59.603 52.381 34.58 19.09 43.13 4.61
5445 5719 4.508124 CGAATCCCTAGTAATCTGCACAAC 59.492 45.833 0.00 0.00 0.00 3.32
5491 5765 0.030638 GGTCATGAGAGAGAGCGAGC 59.969 60.000 0.00 0.00 0.00 5.03
5493 5767 0.746204 TCATGAGAGAGAGCGAGCGT 60.746 55.000 0.00 0.00 0.00 5.07
5504 5778 0.591741 AGCGAGCGTCGTGTATAAGC 60.592 55.000 8.72 0.00 42.81 3.09
5541 5815 0.959372 GAGGAGTTCGACCGGTGAGA 60.959 60.000 14.63 8.88 0.00 3.27
5559 5834 4.565564 GTGAGACTCGGTTGCGTTATAAAT 59.434 41.667 0.00 0.00 0.00 1.40
5584 5859 2.677765 TAGAGCCCCCTCGACTAGCG 62.678 65.000 0.00 0.00 43.05 4.26
5598 5873 1.823610 ACTAGCGAGGTGGGACTAAAC 59.176 52.381 0.00 0.00 0.00 2.01
5610 5885 0.320421 GACTAAACCCAGAGCGCACA 60.320 55.000 11.47 0.00 0.00 4.57
5658 5933 1.227674 CAGCTATCTGGGCCGGAAC 60.228 63.158 21.02 12.07 36.68 3.62
5661 5936 0.886490 GCTATCTGGGCCGGAACATG 60.886 60.000 21.02 10.63 0.00 3.21
5662 5937 0.758734 CTATCTGGGCCGGAACATGA 59.241 55.000 21.02 1.73 0.00 3.07
5679 5954 1.891933 TGACCCAATAGCCTCCATCA 58.108 50.000 0.00 0.00 0.00 3.07
5681 5956 2.785269 TGACCCAATAGCCTCCATCATT 59.215 45.455 0.00 0.00 0.00 2.57
5682 5957 3.152341 GACCCAATAGCCTCCATCATTG 58.848 50.000 0.00 0.00 0.00 2.82
5692 5967 3.424703 CCTCCATCATTGACAAACACCT 58.575 45.455 0.00 0.00 0.00 4.00
5707 5982 1.427368 ACACCTCACCAATAAGCCCAA 59.573 47.619 0.00 0.00 0.00 4.12
5806 6081 6.257849 TCAAATACTAGTTCGCAGGCAATAAG 59.742 38.462 0.00 0.00 0.00 1.73
5996 6274 9.646427 AAGTTCAACTACTAAAAATGCAACAAA 57.354 25.926 0.00 0.00 0.00 2.83
6218 6675 9.447157 TCAGTTCAAACATACATATGACATCAA 57.553 29.630 10.38 0.00 37.15 2.57
6251 6708 0.835941 GGATCAGTCAGGCCACTCAT 59.164 55.000 5.01 0.00 0.00 2.90
6253 6710 2.636893 GGATCAGTCAGGCCACTCATAT 59.363 50.000 5.01 0.00 0.00 1.78
6262 6719 2.433604 AGGCCACTCATATCACTGTGAG 59.566 50.000 16.46 4.64 43.97 3.51
6279 6736 5.186797 ACTGTGAGACCAAATTTCAAAACCA 59.813 36.000 0.00 0.00 0.00 3.67
6484 6943 7.998580 ACTTCGGTGGAAAAACAATACTTAAA 58.001 30.769 0.00 0.00 0.00 1.52
6504 6963 8.023128 ACTTAAAATCCACACAGAAAATCATCG 58.977 33.333 0.00 0.00 0.00 3.84
6616 7164 2.558795 ACAAGACTACTCAGTGCGACAT 59.441 45.455 0.00 0.00 34.21 3.06
6630 7193 3.183574 GTGCGACATTAAAAACCCTTTGC 59.816 43.478 0.00 0.00 0.00 3.68
6654 7217 3.771216 TGGACGGTTAGTTCTTCTAGGT 58.229 45.455 0.00 0.00 0.00 3.08
6738 7327 0.321210 CTACAACCATGCACCCGACA 60.321 55.000 0.00 0.00 0.00 4.35
6759 11685 3.402681 CGCCTCCCACACATCCCT 61.403 66.667 0.00 0.00 0.00 4.20
6778 11705 3.255725 CCTGTCGATGCATTGCAAAAAT 58.744 40.909 16.46 0.00 43.62 1.82
6780 11707 4.266029 CCTGTCGATGCATTGCAAAAATAC 59.734 41.667 16.46 10.09 43.62 1.89
6813 11740 2.775960 TCCATCTCTGCCTCATTCACAT 59.224 45.455 0.00 0.00 0.00 3.21
6843 11773 1.078143 GCCGCTTCCATCTCCACTT 60.078 57.895 0.00 0.00 0.00 3.16
6854 11784 3.213506 CATCTCCACTTCACACAAACCA 58.786 45.455 0.00 0.00 0.00 3.67
6855 11785 2.639065 TCTCCACTTCACACAAACCAC 58.361 47.619 0.00 0.00 0.00 4.16
6923 11857 1.376037 GAGGAACCGTCTGCCAAGG 60.376 63.158 0.00 0.00 0.00 3.61
6952 11886 1.572941 CGAGACGTCGGACAAGACA 59.427 57.895 10.46 0.00 42.87 3.41
6960 16206 0.534203 TCGGACAAGACAAGCAACCC 60.534 55.000 0.00 0.00 0.00 4.11
6961 16207 0.535102 CGGACAAGACAAGCAACCCT 60.535 55.000 0.00 0.00 0.00 4.34
6974 16220 0.528901 CAACCCTGTCGACGTTCACA 60.529 55.000 11.62 0.00 0.00 3.58
7040 16286 3.805928 TCCATGGCAAGGAGACGT 58.194 55.556 7.49 0.00 0.00 4.34
7074 16320 1.071471 CCAGCGAACCAGACAAGGT 59.929 57.895 0.00 0.00 45.91 3.50
7077 16323 2.027625 GCGAACCAGACAAGGTCGG 61.028 63.158 0.00 0.00 42.25 4.79
7081 16327 0.834612 AACCAGACAAGGTCGGTGAA 59.165 50.000 11.59 0.00 42.25 3.18
7142 16388 3.355626 CGAGCTTCATCGGAGTTGATA 57.644 47.619 0.00 0.00 39.04 2.15
7350 16598 9.817809 GATGAACTACTATATTTGTGAAGTGGA 57.182 33.333 0.00 0.00 0.00 4.02
7352 16600 9.599866 TGAACTACTATATTTGTGAAGTGGATG 57.400 33.333 0.00 0.00 0.00 3.51
7353 16601 8.438676 AACTACTATATTTGTGAAGTGGATGC 57.561 34.615 0.00 0.00 0.00 3.91
7354 16602 7.564793 ACTACTATATTTGTGAAGTGGATGCA 58.435 34.615 0.00 0.00 0.00 3.96
7355 16603 6.683974 ACTATATTTGTGAAGTGGATGCAC 57.316 37.500 9.70 9.70 0.00 4.57
7356 16604 4.989279 ATATTTGTGAAGTGGATGCACC 57.011 40.909 14.38 0.00 39.54 5.01
7366 16614 2.877097 TGGATGCACCAGTACATGTT 57.123 45.000 2.30 0.00 44.64 2.71
7367 16615 3.153369 TGGATGCACCAGTACATGTTT 57.847 42.857 2.30 0.00 44.64 2.83
7368 16616 3.081061 TGGATGCACCAGTACATGTTTC 58.919 45.455 2.30 0.00 44.64 2.78
7369 16617 3.244875 TGGATGCACCAGTACATGTTTCT 60.245 43.478 2.30 0.00 44.64 2.52
7370 16618 3.375299 GGATGCACCAGTACATGTTTCTC 59.625 47.826 2.30 0.00 38.79 2.87
7371 16619 3.483808 TGCACCAGTACATGTTTCTCA 57.516 42.857 2.30 0.00 0.00 3.27
7372 16620 3.814625 TGCACCAGTACATGTTTCTCAA 58.185 40.909 2.30 0.00 0.00 3.02
7373 16621 3.814842 TGCACCAGTACATGTTTCTCAAG 59.185 43.478 2.30 0.00 0.00 3.02
7374 16622 3.815401 GCACCAGTACATGTTTCTCAAGT 59.185 43.478 2.30 0.00 0.00 3.16
7375 16623 4.275936 GCACCAGTACATGTTTCTCAAGTT 59.724 41.667 2.30 0.00 0.00 2.66
7376 16624 5.468746 GCACCAGTACATGTTTCTCAAGTTA 59.531 40.000 2.30 0.00 0.00 2.24
7377 16625 6.565999 GCACCAGTACATGTTTCTCAAGTTAC 60.566 42.308 2.30 0.00 0.00 2.50
7744 17049 5.390673 GCAGCACATATATCATTGACTCTGC 60.391 44.000 0.00 0.00 35.89 4.26
7778 17096 5.381174 CTTCAATCTGGTGAAGCATTTGA 57.619 39.130 2.26 4.73 45.84 2.69
7840 17161 9.137459 TGGTGTAGTTGAATTTAATTTCAGGAA 57.863 29.630 11.46 0.00 36.97 3.36
8054 17377 4.277174 ACACATTTGTCGGTTTCAGCATTA 59.723 37.500 0.00 0.00 0.00 1.90
8199 17523 2.511600 CGGCGTCATCCACCCTTC 60.512 66.667 0.00 0.00 0.00 3.46
8203 17527 0.759346 GCGTCATCCACCCTTCCTAT 59.241 55.000 0.00 0.00 0.00 2.57
8323 17650 1.086696 ATGCCACGTACAAGTCATGC 58.913 50.000 0.00 0.00 0.00 4.06
8388 17715 0.618968 CAGGAGGCTGACCCCTACTT 60.619 60.000 0.00 0.00 43.97 2.24
8438 17765 4.319477 GCAAGAAAGTCTGCATTCGTGTTA 60.319 41.667 12.96 0.00 37.36 2.41
8529 17858 6.593770 CAGCTACCTTATGTTATGTGTGTCAA 59.406 38.462 0.00 0.00 0.00 3.18
8553 17882 8.410141 CAAGGTTTGAACAAGTTTTCCTATGTA 58.590 33.333 0.00 0.00 0.00 2.29
8593 17922 8.603181 GTTTGCTTATGTCATTCAACAAGTTTT 58.397 29.630 0.00 0.00 31.81 2.43
8686 18017 2.082231 CAGCACCTGACATGGAGAAAG 58.918 52.381 0.00 0.00 32.44 2.62
8944 18285 6.112058 ACTGCATAAGGAAAAAGCAAACAAA 58.888 32.000 0.00 0.00 34.45 2.83
8953 18294 7.500141 AGGAAAAAGCAAACAAACATCAGTAT 58.500 30.769 0.00 0.00 0.00 2.12
8979 18320 4.920640 TTCCTAGTCACTAGCATGCTAC 57.079 45.455 23.52 16.27 33.12 3.58
9179 18525 3.771216 ACATTGCCTTGAGAAGAACCAT 58.229 40.909 0.00 0.00 0.00 3.55
9392 18746 7.544804 TCAGTAAGTGCTATGATGATACCAT 57.455 36.000 0.00 0.00 35.29 3.55
9409 18763 8.537728 TGATACCATTTAATGCCTTGAGAAAT 57.462 30.769 0.00 0.00 0.00 2.17
9410 18764 9.639563 TGATACCATTTAATGCCTTGAGAAATA 57.360 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 130 7.573096 CGCAGAAAATTTCTTTGAAGTAGGCTA 60.573 37.037 5.36 0.00 38.11 3.93
175 177 5.173664 CACATAGTTCATGCTCTCACTTCA 58.826 41.667 0.00 0.00 38.29 3.02
214 216 6.285990 GGTGTAGGTTTTGTCTCTCACTTAA 58.714 40.000 0.00 0.00 0.00 1.85
256 258 0.307760 GTGGTTTTGACGCAGGAGTG 59.692 55.000 0.00 0.00 0.00 3.51
275 277 2.750166 TCTTAGTTCTCTGTCTGCCTCG 59.250 50.000 0.00 0.00 0.00 4.63
276 278 4.013728 TCTCTTAGTTCTCTGTCTGCCTC 58.986 47.826 0.00 0.00 0.00 4.70
277 279 3.761752 GTCTCTTAGTTCTCTGTCTGCCT 59.238 47.826 0.00 0.00 0.00 4.75
278 280 3.508012 TGTCTCTTAGTTCTCTGTCTGCC 59.492 47.826 0.00 0.00 0.00 4.85
279 281 4.775058 TGTCTCTTAGTTCTCTGTCTGC 57.225 45.455 0.00 0.00 0.00 4.26
280 282 6.098679 CCATTGTCTCTTAGTTCTCTGTCTG 58.901 44.000 0.00 0.00 0.00 3.51
281 283 5.186797 CCCATTGTCTCTTAGTTCTCTGTCT 59.813 44.000 0.00 0.00 0.00 3.41
282 284 5.046950 ACCCATTGTCTCTTAGTTCTCTGTC 60.047 44.000 0.00 0.00 0.00 3.51
283 285 4.841246 ACCCATTGTCTCTTAGTTCTCTGT 59.159 41.667 0.00 0.00 0.00 3.41
284 286 5.413309 ACCCATTGTCTCTTAGTTCTCTG 57.587 43.478 0.00 0.00 0.00 3.35
285 287 6.497259 TGTTACCCATTGTCTCTTAGTTCTCT 59.503 38.462 0.00 0.00 0.00 3.10
286 288 6.698380 TGTTACCCATTGTCTCTTAGTTCTC 58.302 40.000 0.00 0.00 0.00 2.87
287 289 6.295916 CCTGTTACCCATTGTCTCTTAGTTCT 60.296 42.308 0.00 0.00 0.00 3.01
288 290 5.875359 CCTGTTACCCATTGTCTCTTAGTTC 59.125 44.000 0.00 0.00 0.00 3.01
289 291 5.280521 CCCTGTTACCCATTGTCTCTTAGTT 60.281 44.000 0.00 0.00 0.00 2.24
290 292 4.225267 CCCTGTTACCCATTGTCTCTTAGT 59.775 45.833 0.00 0.00 0.00 2.24
291 293 4.225267 ACCCTGTTACCCATTGTCTCTTAG 59.775 45.833 0.00 0.00 0.00 2.18
292 294 4.172807 ACCCTGTTACCCATTGTCTCTTA 58.827 43.478 0.00 0.00 0.00 2.10
293 295 2.986728 ACCCTGTTACCCATTGTCTCTT 59.013 45.455 0.00 0.00 0.00 2.85
294 296 2.632537 ACCCTGTTACCCATTGTCTCT 58.367 47.619 0.00 0.00 0.00 3.10
526 604 1.533033 TGGGCTGTTCCGTCTCTGA 60.533 57.895 0.00 0.00 34.94 3.27
871 963 4.156556 GTCATTTCTGCTGAATGTTGGCTA 59.843 41.667 6.88 0.00 31.56 3.93
884 976 2.031682 ACTGTTCGCAAGTCATTTCTGC 60.032 45.455 0.00 0.00 39.48 4.26
900 992 3.207778 TGCCTTGTTTTACGCTACTGTT 58.792 40.909 0.00 0.00 0.00 3.16
991 1085 2.742053 GTGACTTCGCCATTTGCTCTTA 59.258 45.455 0.00 0.00 38.05 2.10
1007 1101 1.605451 TCCATGACGACCCGTGACT 60.605 57.895 0.00 0.00 41.37 3.41
1038 1133 1.695893 AATGCATGGCGTCGAGTTCG 61.696 55.000 0.00 0.00 41.45 3.95
1127 1222 2.439507 TCAATAGCTCCCAGATGGTTCC 59.560 50.000 0.00 0.00 34.77 3.62
1156 1251 4.710324 TGTTGGTTATCTTCCTCGTTGTT 58.290 39.130 0.00 0.00 0.00 2.83
1171 1266 0.106519 AGCTCTGGTTGCTGTTGGTT 60.107 50.000 0.00 0.00 39.56 3.67
1173 1268 0.313043 CAAGCTCTGGTTGCTGTTGG 59.687 55.000 0.00 0.00 41.03 3.77
1254 1349 2.809174 TCATGTCGTTCGCCTGCG 60.809 61.111 4.92 4.92 41.35 5.18
1288 1383 2.282674 CCTTTCCTGCTGCTGCCA 60.283 61.111 13.47 0.56 38.71 4.92
1369 1479 2.666190 GGCTGCTGTTGTCGCTGA 60.666 61.111 0.00 0.00 0.00 4.26
1627 1757 1.089481 CACGTGCGGGCATTATGTCT 61.089 55.000 0.82 0.00 0.00 3.41
1743 1874 3.868077 CGTCTGATTGGTCTTCATTCTCC 59.132 47.826 0.00 0.00 0.00 3.71
1752 1883 4.021104 TCATTGTCTTCGTCTGATTGGTCT 60.021 41.667 0.00 0.00 0.00 3.85
1837 1968 3.989787 CTTGCCGGCGCCCTTTTT 61.990 61.111 23.46 0.00 0.00 1.94
1988 2133 5.181245 GCTAGATGAGTTTTGGTAGCAACAA 59.819 40.000 6.90 2.81 34.34 2.83
2005 2151 7.869937 TCGAGAAATCAAGGATAAAGCTAGATG 59.130 37.037 0.00 0.00 0.00 2.90
2019 2165 7.808672 ACTATAGTACCGATCGAGAAATCAAG 58.191 38.462 18.66 7.41 0.00 3.02
2021 2167 7.741027 AACTATAGTACCGATCGAGAAATCA 57.259 36.000 18.66 0.00 0.00 2.57
2104 2250 8.334263 TGTGACTGCATTCAAAAGTATTATCA 57.666 30.769 8.50 0.00 0.00 2.15
2347 2514 3.392616 ACTGATGGTCTTTCTGAACTGGT 59.607 43.478 0.00 0.00 32.49 4.00
2658 2840 2.289631 TGTCGCACTGATCCATCTTGTT 60.290 45.455 0.00 0.00 0.00 2.83
2665 2847 3.394674 TTTTACTGTCGCACTGATCCA 57.605 42.857 0.00 0.00 0.00 3.41
2723 2906 8.311109 TGTCAAGCTGTACTTATGATCTGTTAA 58.689 33.333 0.00 0.00 36.04 2.01
2724 2907 7.836842 TGTCAAGCTGTACTTATGATCTGTTA 58.163 34.615 0.00 0.00 36.04 2.41
2725 2908 6.701340 TGTCAAGCTGTACTTATGATCTGTT 58.299 36.000 0.00 0.00 36.04 3.16
2726 2909 6.286240 TGTCAAGCTGTACTTATGATCTGT 57.714 37.500 0.00 0.00 36.04 3.41
2756 3025 2.287608 GGGTTTTTACTGCTGCACTGAC 60.288 50.000 0.00 0.00 0.00 3.51
2765 3034 4.038642 TCCAAGTCAATGGGTTTTTACTGC 59.961 41.667 0.00 0.00 41.05 4.40
2778 3047 4.618920 AGAAGTAACCGTCCAAGTCAAT 57.381 40.909 0.00 0.00 0.00 2.57
2782 3051 4.220163 CCTAGAAGAAGTAACCGTCCAAGT 59.780 45.833 0.00 0.00 0.00 3.16
2795 3064 0.253327 GGGTGGTGGCCTAGAAGAAG 59.747 60.000 3.32 0.00 0.00 2.85
2838 3107 2.485122 CCGTTCGCATTCCCTTGC 59.515 61.111 0.00 0.00 39.29 4.01
2842 3111 2.822701 GTCCCCGTTCGCATTCCC 60.823 66.667 0.00 0.00 0.00 3.97
2871 3140 3.551496 ATGGGTGCAGTGGTCGTGG 62.551 63.158 0.00 0.00 0.00 4.94
2872 3141 2.032528 ATGGGTGCAGTGGTCGTG 59.967 61.111 0.00 0.00 0.00 4.35
2873 3142 2.032528 CATGGGTGCAGTGGTCGT 59.967 61.111 0.00 0.00 0.00 4.34
2903 3172 4.489771 GGGGATGTGTGGGAGGCG 62.490 72.222 0.00 0.00 0.00 5.52
2924 3194 2.324860 GGGTTATTTTTGCAGTGCGTC 58.675 47.619 11.20 0.00 0.00 5.19
2938 3208 3.775316 AGAGATGGAAGACAACGGGTTAT 59.225 43.478 0.00 0.00 0.00 1.89
2939 3209 3.056107 CAGAGATGGAAGACAACGGGTTA 60.056 47.826 0.00 0.00 0.00 2.85
2940 3210 1.978580 AGAGATGGAAGACAACGGGTT 59.021 47.619 0.00 0.00 0.00 4.11
2941 3211 1.276421 CAGAGATGGAAGACAACGGGT 59.724 52.381 0.00 0.00 0.00 5.28
2944 3214 1.066573 AGGCAGAGATGGAAGACAACG 60.067 52.381 0.00 0.00 0.00 4.10
2945 3215 2.626840 GAGGCAGAGATGGAAGACAAC 58.373 52.381 0.00 0.00 0.00 3.32
2947 3217 0.820226 CGAGGCAGAGATGGAAGACA 59.180 55.000 0.00 0.00 0.00 3.41
2948 3218 0.820871 ACGAGGCAGAGATGGAAGAC 59.179 55.000 0.00 0.00 0.00 3.01
2966 3236 3.498018 GGGCAATGGTGATTTTTGTGAAC 59.502 43.478 0.00 0.00 0.00 3.18
2970 3240 2.337849 AGGGGCAATGGTGATTTTTGT 58.662 42.857 0.00 0.00 0.00 2.83
2973 3243 1.908619 GGAAGGGGCAATGGTGATTTT 59.091 47.619 0.00 0.00 0.00 1.82
2977 3247 0.033208 GATGGAAGGGGCAATGGTGA 60.033 55.000 0.00 0.00 0.00 4.02
2983 3253 0.846427 AGTGGAGATGGAAGGGGCAA 60.846 55.000 0.00 0.00 0.00 4.52
3003 3273 4.589908 AGAGAACTTTGTGGTTTGTCTGT 58.410 39.130 0.00 0.00 0.00 3.41
3019 3289 1.620819 TGTGGGCTTGAGAGAGAGAAC 59.379 52.381 0.00 0.00 0.00 3.01
3029 3299 3.535629 CTGGCGACTGTGGGCTTGA 62.536 63.158 16.61 0.00 0.00 3.02
3069 3339 2.514592 ATGATGCTTGGCGGACGG 60.515 61.111 0.00 0.00 0.00 4.79
3070 3340 1.162181 ATGATGATGCTTGGCGGACG 61.162 55.000 0.00 0.00 0.00 4.79
3075 3345 1.337071 CTCACCATGATGATGCTTGGC 59.663 52.381 0.00 0.00 36.76 4.52
3082 3352 3.026694 TCTGACGTCTCACCATGATGAT 58.973 45.455 17.92 0.00 0.00 2.45
3092 3362 1.609072 CTGGTCTTGTCTGACGTCTCA 59.391 52.381 17.92 10.46 37.81 3.27
3101 3371 1.212935 ACAAGGTTGCTGGTCTTGTCT 59.787 47.619 0.00 0.00 45.24 3.41
3102 3372 1.680338 ACAAGGTTGCTGGTCTTGTC 58.320 50.000 0.00 0.00 45.24 3.18
3123 3393 0.526211 TCTCCGAGGACGTGAACATG 59.474 55.000 0.00 0.00 37.88 3.21
3125 3395 0.250597 TCTCTCCGAGGACGTGAACA 60.251 55.000 0.00 0.00 37.88 3.18
3136 3406 1.449070 TACTCGCGCTTCTCTCCGA 60.449 57.895 5.56 0.00 0.00 4.55
3140 3410 1.134901 CGTGTACTCGCGCTTCTCT 59.865 57.895 5.56 0.00 40.56 3.10
3164 3434 0.543749 GGAGATCAACCCCTGTGAGG 59.456 60.000 0.00 0.00 34.30 3.86
3187 3457 1.417145 AGATCTCCAGCATCTCCTTGC 59.583 52.381 0.00 0.00 43.09 4.01
3196 3466 1.273759 AGTGCAGAAGATCTCCAGCA 58.726 50.000 10.71 10.71 34.29 4.41
3205 3475 3.005897 GTCTGGTTCACTAGTGCAGAAGA 59.994 47.826 24.47 18.14 32.06 2.87
3207 3477 2.698274 TGTCTGGTTCACTAGTGCAGAA 59.302 45.455 24.47 15.78 32.06 3.02
3209 3479 2.820059 TGTCTGGTTCACTAGTGCAG 57.180 50.000 18.45 18.17 0.00 4.41
3215 3485 2.295349 GTCGACCTTGTCTGGTTCACTA 59.705 50.000 3.51 0.00 41.00 2.74
3251 3521 2.588989 CCAGCCTTCCTCCAGAGC 59.411 66.667 0.00 0.00 0.00 4.09
3276 3546 5.528690 CACCAACACCGATGATCTTATGAAT 59.471 40.000 0.00 0.00 0.00 2.57
3278 3548 4.081142 ACACCAACACCGATGATCTTATGA 60.081 41.667 0.00 0.00 0.00 2.15
3279 3549 4.034394 CACACCAACACCGATGATCTTATG 59.966 45.833 0.00 0.00 0.00 1.90
3280 3550 4.191544 CACACCAACACCGATGATCTTAT 58.808 43.478 0.00 0.00 0.00 1.73
3311 3581 1.630369 TGGGGAGGTTCATCTTCACTG 59.370 52.381 0.00 0.00 0.00 3.66
3314 3584 2.342406 TCTGGGGAGGTTCATCTTCA 57.658 50.000 0.00 0.00 0.00 3.02
3315 3585 2.158696 CCATCTGGGGAGGTTCATCTTC 60.159 54.545 0.00 0.00 0.00 2.87
3343 3613 3.716006 CGACGCACAACTGCAGGG 61.716 66.667 19.93 12.40 44.50 4.45
3356 3626 1.144565 CCAAGCAGAGCTCATCGACG 61.145 60.000 17.77 0.00 38.25 5.12
3386 3656 1.373246 CCATTTTGTGGCCACTGCG 60.373 57.895 34.75 18.52 42.12 5.18
3411 3681 0.779997 AACAGGGCAAATGAGAGGGT 59.220 50.000 0.00 0.00 0.00 4.34
3529 3800 9.890629 ATAGTGTATCTACTTGAGAAAATGCAA 57.109 29.630 0.00 0.00 37.85 4.08
3556 3827 6.869913 AGTGCATCAGGTTCAAAAATACATTG 59.130 34.615 0.00 0.00 0.00 2.82
3580 3851 9.869844 CGCAAGATTTTCCAAATAGTAATCTAG 57.130 33.333 0.00 0.00 35.20 2.43
3582 3853 7.556275 TCCGCAAGATTTTCCAAATAGTAATCT 59.444 33.333 0.00 0.00 37.20 2.40
3627 3898 7.216973 AGTTCAGAAACTACACTAGTCGATT 57.783 36.000 0.00 0.00 43.98 3.34
3645 3916 5.352284 ACTACGCTATTGGATCAAGTTCAG 58.648 41.667 0.00 0.00 0.00 3.02
3652 3923 7.948357 AGTACATAAACTACGCTATTGGATCA 58.052 34.615 0.00 0.00 0.00 2.92
3766 4037 1.477558 CCAGTGCTTCACCAAGTCCTT 60.478 52.381 0.00 0.00 34.49 3.36
3828 4099 5.569059 GTCAATGTTGTATGTGCTGCTTTAC 59.431 40.000 0.00 1.05 0.00 2.01
3863 4134 9.646427 TCGGGTTATTTTTCTTTTTGGATTATG 57.354 29.630 0.00 0.00 0.00 1.90
4037 4308 4.221482 GCAAGGGGAGAGACATTTTGAAAT 59.779 41.667 0.00 0.00 0.00 2.17
4094 4365 2.605338 CGGCAAATGTGAACAACCTCTG 60.605 50.000 0.00 0.00 0.00 3.35
4133 4404 8.367911 TCTAGACATCTTCAGCTTTTCTTTGTA 58.632 33.333 0.00 0.00 0.00 2.41
4179 4450 1.344942 GCGCTGAATGTCGACGAACT 61.345 55.000 11.62 0.00 0.00 3.01
4184 4455 0.100682 TAGAGGCGCTGAATGTCGAC 59.899 55.000 9.11 9.11 0.00 4.20
4203 4474 2.526888 TCCGGTGTATGGAACTCTCT 57.473 50.000 0.00 0.00 30.98 3.10
4244 4515 1.246056 ATGACGCTGGCTGCAACATT 61.246 50.000 16.76 3.87 43.06 2.71
4252 4523 1.703014 ATGGATGGATGACGCTGGCT 61.703 55.000 0.00 0.00 0.00 4.75
4267 4538 5.178096 TCTTCATGCCTTTGTAGAATGGA 57.822 39.130 8.57 0.00 0.00 3.41
4298 4569 0.107410 TTGTGGTCTTCCTGCGTGTT 60.107 50.000 0.00 0.00 34.23 3.32
4342 4613 3.990092 TGCGTACTTGATGAGTTTGTCT 58.010 40.909 0.00 0.00 39.86 3.41
4348 4619 2.171840 AGTCCTGCGTACTTGATGAGT 58.828 47.619 0.00 0.00 42.55 3.41
4381 4652 1.424403 TGTTCCATGACTTGTACGCG 58.576 50.000 3.53 3.53 0.00 6.01
4383 4654 4.026558 CGATCATGTTCCATGACTTGTACG 60.027 45.833 8.95 5.59 0.00 3.67
4405 4676 3.190079 CCAACCATCTGTGATGTAGTCG 58.810 50.000 6.78 0.00 0.00 4.18
4451 4722 1.012486 GGGCGGTCGTAGAAGTTGTG 61.012 60.000 0.00 0.00 39.69 3.33
4458 4729 0.974010 ATGAAAGGGGCGGTCGTAGA 60.974 55.000 0.00 0.00 0.00 2.59
4460 4731 1.259142 TGATGAAAGGGGCGGTCGTA 61.259 55.000 0.00 0.00 0.00 3.43
4477 4748 8.089625 TGATGTATCTTCATCCCTAAAAGTGA 57.910 34.615 4.59 0.00 42.24 3.41
4479 4750 8.324191 TCTGATGTATCTTCATCCCTAAAAGT 57.676 34.615 4.59 0.00 42.24 2.66
4510 4781 4.278419 GCACAAGTGGAAGGAAAACATAGT 59.722 41.667 2.00 0.00 0.00 2.12
4513 4784 3.299503 AGCACAAGTGGAAGGAAAACAT 58.700 40.909 2.00 0.00 0.00 2.71
4514 4785 2.733956 AGCACAAGTGGAAGGAAAACA 58.266 42.857 2.00 0.00 0.00 2.83
4526 4797 6.345096 ACAATATAAAAGCCAAGCACAAGT 57.655 33.333 0.00 0.00 0.00 3.16
4579 4850 6.535150 CACGACATAATCATACTGGTTCAACT 59.465 38.462 0.00 0.00 0.00 3.16
4587 4858 5.519927 TGACAAGCACGACATAATCATACTG 59.480 40.000 0.00 0.00 0.00 2.74
4601 4872 1.333308 TGTTCAACCATGACAAGCACG 59.667 47.619 0.00 0.00 34.61 5.34
4676 4947 7.931407 TGATGGATTAACAACATACGAAGCTAT 59.069 33.333 0.00 0.00 0.00 2.97
4751 5022 9.582431 TGTGATTAGTTGCTTCATAACTAGTAC 57.418 33.333 0.00 0.00 40.53 2.73
4769 5040 3.135225 TGGGACAACGTTGTGTGATTAG 58.865 45.455 36.74 6.80 42.43 1.73
4787 5058 5.964958 ACTGAATTGAAACTACACATGGG 57.035 39.130 0.00 0.00 0.00 4.00
4833 5104 6.421801 GCAACTCTAATTGTGCTGATTGTTTT 59.578 34.615 0.00 0.00 31.83 2.43
4851 5122 6.263168 ACTTTGTAGCATTGTTAAGCAACTCT 59.737 34.615 0.00 0.00 40.28 3.24
4866 5137 6.321181 AGAATTTCTGGTTCAACTTTGTAGCA 59.679 34.615 0.00 1.33 35.28 3.49
4870 5141 8.293699 ACTAAGAATTTCTGGTTCAACTTTGT 57.706 30.769 0.00 0.00 0.00 2.83
4881 5153 9.877178 ACTACATGAAGTACTAAGAATTTCTGG 57.123 33.333 0.00 0.00 0.00 3.86
4909 5181 4.655762 AGCAGCTACATATGAACGAGAA 57.344 40.909 10.38 0.00 0.00 2.87
4974 5248 1.871039 GCGACCAACATAAGTGTGTGT 59.129 47.619 0.00 0.00 38.92 3.72
4993 5267 5.557891 ACTGTCATTCTAAATCTGCAAGC 57.442 39.130 0.00 0.00 0.00 4.01
5004 5278 9.682465 ATCAAGTGTACTAGTACTGTCATTCTA 57.318 33.333 28.56 7.13 37.00 2.10
5006 5280 7.640630 CGATCAAGTGTACTAGTACTGTCATTC 59.359 40.741 28.56 18.44 37.00 2.67
5067 5341 2.354821 GGGTGTTAAGGATTGATGCGTC 59.645 50.000 0.00 0.00 0.00 5.19
5069 5343 1.676006 GGGGTGTTAAGGATTGATGCG 59.324 52.381 0.00 0.00 0.00 4.73
5096 5370 7.038659 GCACTTATGTTCTTAGTCTGACATCT 58.961 38.462 10.88 0.00 0.00 2.90
5097 5371 7.038659 AGCACTTATGTTCTTAGTCTGACATC 58.961 38.462 10.88 0.00 0.00 3.06
5143 5417 7.954835 TGGTACTTGTGTGTATACTAAGTTGT 58.045 34.615 14.38 7.22 36.76 3.32
5173 5447 4.137543 GGTCTTCTGGTGTCATTTTCAGT 58.862 43.478 0.00 0.00 0.00 3.41
5251 5525 8.609176 TGTGAGTTTTGTGTAAGTCTAATGTTC 58.391 33.333 0.00 0.00 0.00 3.18
5254 5528 8.826710 TCTTGTGAGTTTTGTGTAAGTCTAATG 58.173 33.333 0.00 0.00 0.00 1.90
5259 5533 7.073342 AGTTCTTGTGAGTTTTGTGTAAGTC 57.927 36.000 0.00 0.00 0.00 3.01
5294 5568 5.487488 TCCACCAGTAACTTGGATTGATACT 59.513 40.000 0.00 0.00 40.87 2.12
5295 5569 5.741011 TCCACCAGTAACTTGGATTGATAC 58.259 41.667 0.00 0.00 40.87 2.24
5296 5570 5.487488 ACTCCACCAGTAACTTGGATTGATA 59.513 40.000 0.00 0.00 40.87 2.15
5301 5575 3.248024 TGACTCCACCAGTAACTTGGAT 58.752 45.455 0.00 0.00 40.87 3.41
5346 5620 3.386402 TGGGCGGTCAATTCTTTCTTTTT 59.614 39.130 0.00 0.00 0.00 1.94
5350 5624 2.162681 CTTGGGCGGTCAATTCTTTCT 58.837 47.619 0.00 0.00 0.00 2.52
5351 5625 1.202348 CCTTGGGCGGTCAATTCTTTC 59.798 52.381 0.00 0.00 0.00 2.62
5355 5629 1.313091 GGTCCTTGGGCGGTCAATTC 61.313 60.000 0.00 0.00 0.00 2.17
5375 5649 3.470888 ATCGTTAGGGCCTGCGCT 61.471 61.111 18.53 13.44 42.05 5.92
5387 5661 7.115095 GCTCGATTTTAAGTATCTAGCATCGTT 59.885 37.037 15.38 0.00 39.38 3.85
5404 5678 3.981308 CCCACGTGGCTCGATTTT 58.019 55.556 29.75 0.00 42.86 1.82
5421 5695 3.060602 GTGCAGATTACTAGGGATTCGC 58.939 50.000 0.00 0.00 0.00 4.70
5491 5765 1.113253 CTGAGCGCTTATACACGACG 58.887 55.000 13.26 0.00 0.00 5.12
5493 5767 1.100510 ACCTGAGCGCTTATACACGA 58.899 50.000 13.26 0.00 0.00 4.35
5504 5778 3.632604 TCCTCTGAATACTTACCTGAGCG 59.367 47.826 0.00 0.00 0.00 5.03
5541 5815 5.014808 ACCTATTTATAACGCAACCGAGT 57.985 39.130 0.00 0.00 38.29 4.18
5547 5821 6.453092 GGCTCTAGACCTATTTATAACGCAA 58.547 40.000 0.00 0.00 0.00 4.85
5559 5834 0.696826 TCGAGGGGGCTCTAGACCTA 60.697 60.000 0.96 0.00 44.77 3.08
5640 5915 1.227674 GTTCCGGCCCAGATAGCTG 60.228 63.158 0.00 0.00 41.93 4.24
5653 5928 1.134098 AGGCTATTGGGTCATGTTCCG 60.134 52.381 0.00 0.00 0.00 4.30
5658 5933 2.107031 TGATGGAGGCTATTGGGTCATG 59.893 50.000 0.00 0.00 0.00 3.07
5661 5936 3.152341 CAATGATGGAGGCTATTGGGTC 58.848 50.000 0.00 0.00 0.00 4.46
5662 5937 2.785269 TCAATGATGGAGGCTATTGGGT 59.215 45.455 7.01 0.00 32.76 4.51
5679 5954 5.278957 GCTTATTGGTGAGGTGTTTGTCAAT 60.279 40.000 0.00 0.00 0.00 2.57
5681 5956 3.568007 GCTTATTGGTGAGGTGTTTGTCA 59.432 43.478 0.00 0.00 0.00 3.58
5682 5957 3.057526 GGCTTATTGGTGAGGTGTTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
5692 5967 6.672266 TTGTTTAATTGGGCTTATTGGTGA 57.328 33.333 0.00 0.00 0.00 4.02
5707 5982 2.167662 CCGCCCTCTGGTTTGTTTAAT 58.832 47.619 0.00 0.00 0.00 1.40
5830 6105 6.183360 CCGTGGTGCAGAGCTAAAATTATTTA 60.183 38.462 0.00 0.00 0.00 1.40
6054 6498 6.079424 TGTTGCATTTTAGTAGTTGAACCC 57.921 37.500 0.00 0.00 0.00 4.11
6055 6499 7.200455 ACTTGTTGCATTTTAGTAGTTGAACC 58.800 34.615 0.00 0.00 0.00 3.62
6251 6708 7.815840 TTTGAAATTTGGTCTCACAGTGATA 57.184 32.000 2.97 0.00 0.00 2.15
6253 6710 6.329496 GTTTTGAAATTTGGTCTCACAGTGA 58.671 36.000 2.48 2.48 0.00 3.41
6262 6719 6.650390 ACAGCATATGGTTTTGAAATTTGGTC 59.350 34.615 4.25 0.00 0.00 4.02
6313 6770 8.511321 CATTTTAGTGCACTTATGGTTTAGTGA 58.489 33.333 27.06 0.00 43.45 3.41
6464 6923 8.984764 GTGGATTTTAAGTATTGTTTTTCCACC 58.015 33.333 0.00 0.00 42.14 4.61
6484 6943 3.758023 TGCGATGATTTTCTGTGTGGATT 59.242 39.130 0.00 0.00 0.00 3.01
6499 6958 2.613595 GGTGATGTATGCTTTGCGATGA 59.386 45.455 0.00 0.00 0.00 2.92
6504 6963 5.106157 ACTGTTTAGGTGATGTATGCTTTGC 60.106 40.000 0.00 0.00 0.00 3.68
6616 7164 3.181474 CGTCCAAGGCAAAGGGTTTTTAA 60.181 43.478 0.00 0.00 0.00 1.52
6630 7193 3.679824 AGAAGAACTAACCGTCCAAGG 57.320 47.619 0.00 0.00 37.30 3.61
6738 7327 1.303317 GATGTGTGGGAGGCGGTTT 60.303 57.895 0.00 0.00 0.00 3.27
6759 11685 4.172505 GGTATTTTTGCAATGCATCGACA 58.827 39.130 9.39 0.00 38.76 4.35
6778 11705 2.777692 GAGATGGAAGACAATGGGGGTA 59.222 50.000 0.00 0.00 0.00 3.69
6780 11707 1.849039 AGAGATGGAAGACAATGGGGG 59.151 52.381 0.00 0.00 0.00 5.40
6813 11740 1.523154 GAAGCGGCAATGGTGGTTCA 61.523 55.000 1.45 0.00 39.30 3.18
6923 11857 0.872021 GACGTCTCGCCATGATGTCC 60.872 60.000 8.70 0.00 41.85 4.02
6952 11886 0.878961 GAACGTCGACAGGGTTGCTT 60.879 55.000 17.16 0.00 0.00 3.91
6960 16206 0.736325 GGGGATGTGAACGTCGACAG 60.736 60.000 17.16 10.90 32.78 3.51
6961 16207 1.290955 GGGGATGTGAACGTCGACA 59.709 57.895 17.16 2.38 32.78 4.35
6974 16220 0.324738 TCACGCTTCTCTCTGGGGAT 60.325 55.000 0.00 0.00 0.00 3.85
7040 16286 0.247460 CTGGTGCAGACGATCTCCAA 59.753 55.000 0.00 0.00 32.44 3.53
7074 16320 0.247460 CCTGCTCATCACTTCACCGA 59.753 55.000 0.00 0.00 0.00 4.69
7077 16323 1.338484 TGAGCCTGCTCATCACTTCAC 60.338 52.381 17.46 0.00 46.80 3.18
7142 16388 6.038271 GGTTTATCTTCGCTTGTGTATTCCAT 59.962 38.462 0.00 0.00 0.00 3.41
7251 16497 4.948004 ACAGATGAATGGACAGTAGTACGA 59.052 41.667 0.00 0.00 0.00 3.43
7253 16499 6.398918 ACAACAGATGAATGGACAGTAGTAC 58.601 40.000 0.00 0.00 0.00 2.73
7350 16598 4.019792 TGAGAAACATGTACTGGTGCAT 57.980 40.909 0.00 0.00 36.33 3.96
7351 16599 3.483808 TGAGAAACATGTACTGGTGCA 57.516 42.857 0.00 0.00 0.00 4.57
7352 16600 3.815401 ACTTGAGAAACATGTACTGGTGC 59.185 43.478 0.00 0.00 35.57 5.01
7353 16601 6.481976 TGTAACTTGAGAAACATGTACTGGTG 59.518 38.462 0.00 0.00 36.16 4.17
7354 16602 6.588204 TGTAACTTGAGAAACATGTACTGGT 58.412 36.000 0.00 0.00 36.16 4.00
7355 16603 7.521529 CATGTAACTTGAGAAACATGTACTGG 58.478 38.462 0.00 0.00 42.62 4.00
7356 16604 7.017645 GCATGTAACTTGAGAAACATGTACTG 58.982 38.462 20.56 0.00 46.93 2.74
7357 16605 6.710295 TGCATGTAACTTGAGAAACATGTACT 59.290 34.615 20.56 1.46 46.93 2.73
7358 16606 6.898041 TGCATGTAACTTGAGAAACATGTAC 58.102 36.000 20.56 0.00 46.93 2.90
7359 16607 7.686438 ATGCATGTAACTTGAGAAACATGTA 57.314 32.000 20.56 18.55 46.93 2.29
7360 16608 6.579666 ATGCATGTAACTTGAGAAACATGT 57.420 33.333 20.56 0.00 46.93 3.21
7362 16610 7.811236 CAGAAATGCATGTAACTTGAGAAACAT 59.189 33.333 0.00 0.00 32.91 2.71
7363 16611 7.013178 TCAGAAATGCATGTAACTTGAGAAACA 59.987 33.333 0.00 0.00 0.00 2.83
7364 16612 7.362662 TCAGAAATGCATGTAACTTGAGAAAC 58.637 34.615 0.00 0.00 0.00 2.78
7365 16613 7.509141 TCAGAAATGCATGTAACTTGAGAAA 57.491 32.000 0.00 0.00 0.00 2.52
7366 16614 7.509141 TTCAGAAATGCATGTAACTTGAGAA 57.491 32.000 0.00 0.00 0.00 2.87
7367 16615 7.229306 AGTTTCAGAAATGCATGTAACTTGAGA 59.771 33.333 0.00 0.00 34.58 3.27
7368 16616 7.325338 CAGTTTCAGAAATGCATGTAACTTGAG 59.675 37.037 0.00 0.00 35.61 3.02
7369 16617 7.140705 CAGTTTCAGAAATGCATGTAACTTGA 58.859 34.615 0.00 0.00 35.61 3.02
7370 16618 6.919662 ACAGTTTCAGAAATGCATGTAACTTG 59.080 34.615 0.00 3.38 35.61 3.16
7371 16619 6.919662 CACAGTTTCAGAAATGCATGTAACTT 59.080 34.615 0.00 0.00 35.61 2.66
7372 16620 6.262944 TCACAGTTTCAGAAATGCATGTAACT 59.737 34.615 0.00 1.88 37.47 2.24
7373 16621 6.437928 TCACAGTTTCAGAAATGCATGTAAC 58.562 36.000 0.00 0.00 34.34 2.50
7374 16622 6.631971 TCACAGTTTCAGAAATGCATGTAA 57.368 33.333 0.00 0.00 34.34 2.41
7375 16623 6.262944 ACTTCACAGTTTCAGAAATGCATGTA 59.737 34.615 0.00 0.00 34.34 2.29
7376 16624 5.068198 ACTTCACAGTTTCAGAAATGCATGT 59.932 36.000 0.00 0.00 34.34 3.21
7377 16625 5.401376 CACTTCACAGTTTCAGAAATGCATG 59.599 40.000 0.00 0.00 34.34 4.06
7778 17096 6.579666 TTTTTGCTATCTTCAGTGCTTCAT 57.420 33.333 0.00 0.00 0.00 2.57
7968 17290 2.705658 CTGCAAGGGGGAGACACATATA 59.294 50.000 0.00 0.00 37.05 0.86
8054 17377 1.078848 GCATCCGCTTGTCACCTCT 60.079 57.895 0.00 0.00 34.30 3.69
8199 17523 9.202273 CGATCTTCTTCTTCATTCCTTTATAGG 57.798 37.037 0.00 0.00 43.46 2.57
8203 17527 8.067751 TCTCGATCTTCTTCTTCATTCCTTTA 57.932 34.615 0.00 0.00 0.00 1.85
8263 17590 0.390866 CGATGAGCTTGTCTGGCAGT 60.391 55.000 15.27 0.00 0.00 4.40
8323 17650 4.905866 GTCACGATGTTGTCAATTGTCTTG 59.094 41.667 5.13 0.00 0.00 3.02
8388 17715 2.664851 CCGCGAAGTTGCAGTGGA 60.665 61.111 8.23 0.00 37.73 4.02
8529 17858 8.706322 ATACATAGGAAAACTTGTTCAAACCT 57.294 30.769 0.00 0.00 0.00 3.50
8553 17882 8.662781 ACATAAGCAAACGATGTACTTGATAT 57.337 30.769 0.00 0.00 32.07 1.63
8593 17922 6.957631 TGGATCAACAAAATAGGAAGCTAGA 58.042 36.000 0.00 0.00 0.00 2.43
8686 18017 9.421806 TGTGAAAATATCCATGTGTGATTTTTC 57.578 29.630 14.75 14.75 34.39 2.29
8730 18067 6.659745 TTGCTGTTGTCCTTAGTTAGTCTA 57.340 37.500 0.00 0.00 0.00 2.59
8953 18294 5.363868 AGCATGCTAGTGACTAGGAAATACA 59.636 40.000 21.21 7.75 37.89 2.29
8979 18320 2.293677 AGTGTACCAGAACTGTCAGTCG 59.706 50.000 5.82 0.00 0.00 4.18
9043 18389 2.957402 ATGTGAACTGAAGCTTCCCA 57.043 45.000 23.42 12.83 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.