Multiple sequence alignment - TraesCS7A01G402400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G402400 chr7A 100.000 5378 0 0 1 5378 581437764 581432387 0.000000e+00 9932.0
1 TraesCS7A01G402400 chr7A 98.039 51 0 1 4476 4525 5870092 5870042 2.670000e-13 87.9
2 TraesCS7A01G402400 chr7A 98.039 51 0 1 4476 4525 18258074 18258124 2.670000e-13 87.9
3 TraesCS7A01G402400 chr7B 90.575 3565 204 41 1228 4745 539236583 539233104 0.000000e+00 4601.0
4 TraesCS7A01G402400 chr7B 89.176 850 44 16 235 1073 539237699 539236887 0.000000e+00 1016.0
5 TraesCS7A01G402400 chr7B 92.231 399 22 5 4987 5378 539232855 539232459 1.690000e-154 556.0
6 TraesCS7A01G402400 chr7B 93.750 128 4 3 4827 4950 539232984 539232857 7.110000e-44 189.0
7 TraesCS7A01G402400 chr7D 87.923 3163 224 70 1626 4745 510711030 510707983 0.000000e+00 3579.0
8 TraesCS7A01G402400 chr7D 83.945 1389 140 39 225 1578 510712374 510711034 0.000000e+00 1253.0
9 TraesCS7A01G402400 chr7D 92.799 611 19 11 4786 5378 510707894 510707291 0.000000e+00 861.0
10 TraesCS7A01G402400 chr5D 90.741 270 16 3 5000 5262 390710146 390709879 8.570000e-93 351.0
11 TraesCS7A01G402400 chr5B 87.241 290 15 8 4981 5261 471138159 471137883 1.450000e-80 311.0
12 TraesCS7A01G402400 chr3B 98.039 51 0 1 4476 4525 814725376 814725426 2.670000e-13 87.9
13 TraesCS7A01G402400 chr2A 98.039 51 0 1 4476 4525 34854760 34854810 2.670000e-13 87.9
14 TraesCS7A01G402400 chr6A 97.959 49 1 0 4476 4524 39607504 39607552 9.600000e-13 86.1
15 TraesCS7A01G402400 chr6A 96.078 51 1 1 4476 4525 39566018 39566068 1.240000e-11 82.4
16 TraesCS7A01G402400 chr4B 97.959 49 1 0 4476 4524 260433312 260433360 9.600000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G402400 chr7A 581432387 581437764 5377 True 9932.000000 9932 100.000000 1 5378 1 chr7A.!!$R2 5377
1 TraesCS7A01G402400 chr7B 539232459 539237699 5240 True 1590.500000 4601 91.433000 235 5378 4 chr7B.!!$R1 5143
2 TraesCS7A01G402400 chr7D 510707291 510712374 5083 True 1897.666667 3579 88.222333 225 5378 3 chr7D.!!$R1 5153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.034186 TGTGAACATCCCCTCATGCC 60.034 55.000 0.00 0.0 0.00 4.40 F
125 126 0.037232 GAAACCGACACAGAGGGAGG 60.037 60.000 0.00 0.0 0.00 4.30 F
507 510 0.037605 GACCAACGAGATCAACCCGT 60.038 55.000 0.00 0.0 38.24 5.28 F
1224 1407 0.037975 GGAGTTCGGTTTGGCGTCTA 60.038 55.000 0.00 0.0 0.00 2.59 F
1402 1595 0.730840 GGCGTAATGTGTGGTTAGGC 59.269 55.000 0.00 0.0 40.38 3.93 F
1416 1609 1.204704 GTTAGGCCAAGTTTCATGCCC 59.795 52.381 5.01 0.0 45.14 5.36 F
1454 1647 1.271840 GCCATGTGTGGGGTCTCCTA 61.272 60.000 0.00 0.0 46.14 2.94 F
1655 1855 2.050077 GCACTTTTGCTGTCGGCC 60.050 61.111 0.00 0.0 46.17 6.13 F
3373 3607 1.134848 TGCTCTTTTTGTTGGTGTGGC 60.135 47.619 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 1388 0.037975 TAGACGCCAAACCGAACTCC 60.038 55.000 0.00 0.00 0.00 3.85 R
1363 1556 0.387622 TCGTCCAAACTACCGAAGCG 60.388 55.000 0.00 0.00 0.00 4.68 R
1369 1562 0.527565 TACGCCTCGTCCAAACTACC 59.472 55.000 0.00 0.00 41.54 3.18 R
2815 3042 0.106519 ACCAGAGGCAAACTGCTTGT 60.107 50.000 0.00 0.00 44.28 3.16 R
3362 3596 2.575805 TACATGATGCCACACCAACA 57.424 45.000 0.00 0.00 0.00 3.33 R
3371 3605 3.565482 CACAACAGGGTATACATGATGCC 59.435 47.826 12.75 1.66 39.54 4.40 R
3373 3607 7.386025 CAGATACACAACAGGGTATACATGATG 59.614 40.741 12.75 12.84 30.68 3.07 R
3577 3813 1.754226 TGCACAACCTCCCAAAAAGAC 59.246 47.619 0.00 0.00 0.00 3.01 R
5295 5656 0.034670 AGCTCCAAATCTGAGGCCAC 60.035 55.000 5.01 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.787473 GACATGTGAACATCCCCTCA 57.213 50.000 1.15 0.00 33.61 3.86
20 21 3.287867 GACATGTGAACATCCCCTCAT 57.712 47.619 1.15 0.00 33.61 2.90
21 22 2.947652 GACATGTGAACATCCCCTCATG 59.052 50.000 1.15 0.00 39.08 3.07
22 23 1.679680 CATGTGAACATCCCCTCATGC 59.320 52.381 0.00 0.00 33.61 4.06
23 24 0.034186 TGTGAACATCCCCTCATGCC 60.034 55.000 0.00 0.00 0.00 4.40
24 25 1.097547 GTGAACATCCCCTCATGCCG 61.098 60.000 0.00 0.00 0.00 5.69
25 26 1.224592 GAACATCCCCTCATGCCGT 59.775 57.895 0.00 0.00 0.00 5.68
26 27 1.077501 AACATCCCCTCATGCCGTG 60.078 57.895 0.00 0.00 0.00 4.94
27 28 2.203252 CATCCCCTCATGCCGTGG 60.203 66.667 0.00 0.00 0.00 4.94
28 29 4.195334 ATCCCCTCATGCCGTGGC 62.195 66.667 3.30 3.30 42.35 5.01
30 31 4.431131 CCCCTCATGCCGTGGCTT 62.431 66.667 12.84 2.54 42.51 4.35
31 32 2.825836 CCCTCATGCCGTGGCTTC 60.826 66.667 12.84 0.00 42.51 3.86
32 33 2.270205 CCTCATGCCGTGGCTTCT 59.730 61.111 12.84 0.00 42.51 2.85
33 34 1.522092 CCTCATGCCGTGGCTTCTA 59.478 57.895 12.84 0.00 42.51 2.10
34 35 0.531532 CCTCATGCCGTGGCTTCTAG 60.532 60.000 12.84 5.70 42.51 2.43
35 36 1.153369 TCATGCCGTGGCTTCTAGC 60.153 57.895 12.84 0.00 42.51 3.42
48 49 3.776340 GCTTCTAGCCACTCTACTCAAC 58.224 50.000 0.00 0.00 34.48 3.18
49 50 3.429684 GCTTCTAGCCACTCTACTCAACC 60.430 52.174 0.00 0.00 34.48 3.77
50 51 2.366533 TCTAGCCACTCTACTCAACCG 58.633 52.381 0.00 0.00 0.00 4.44
51 52 2.093106 CTAGCCACTCTACTCAACCGT 58.907 52.381 0.00 0.00 0.00 4.83
52 53 0.603569 AGCCACTCTACTCAACCGTG 59.396 55.000 0.00 0.00 0.00 4.94
53 54 0.601558 GCCACTCTACTCAACCGTGA 59.398 55.000 0.00 0.00 0.00 4.35
54 55 1.000506 GCCACTCTACTCAACCGTGAA 59.999 52.381 0.00 0.00 31.88 3.18
55 56 2.547218 GCCACTCTACTCAACCGTGAAA 60.547 50.000 0.00 0.00 31.88 2.69
56 57 3.724374 CCACTCTACTCAACCGTGAAAA 58.276 45.455 0.00 0.00 31.88 2.29
57 58 3.741344 CCACTCTACTCAACCGTGAAAAG 59.259 47.826 0.00 0.00 31.88 2.27
58 59 4.369182 CACTCTACTCAACCGTGAAAAGT 58.631 43.478 0.00 0.00 31.88 2.66
59 60 5.508489 CCACTCTACTCAACCGTGAAAAGTA 60.508 44.000 0.00 0.00 31.88 2.24
60 61 6.157211 CACTCTACTCAACCGTGAAAAGTAT 58.843 40.000 0.00 0.00 31.88 2.12
61 62 6.308282 CACTCTACTCAACCGTGAAAAGTATC 59.692 42.308 0.00 0.00 31.88 2.24
62 63 6.015688 ACTCTACTCAACCGTGAAAAGTATCA 60.016 38.462 0.00 0.00 31.88 2.15
63 64 6.154445 TCTACTCAACCGTGAAAAGTATCAC 58.846 40.000 0.00 0.00 44.96 3.06
71 72 4.923264 GTGAAAAGTATCACGGAGGAAC 57.077 45.455 0.00 0.00 40.23 3.62
72 73 4.312443 GTGAAAAGTATCACGGAGGAACA 58.688 43.478 0.00 0.00 40.23 3.18
73 74 4.151867 GTGAAAAGTATCACGGAGGAACAC 59.848 45.833 0.00 0.00 40.23 3.32
74 75 3.329929 AAAGTATCACGGAGGAACACC 57.670 47.619 0.00 0.00 35.10 4.16
82 83 4.097361 GAGGAACACCGGGGGCTC 62.097 72.222 9.50 3.63 0.00 4.70
96 97 4.767255 GCTCCGTGTGAGGCCAGG 62.767 72.222 5.01 0.00 41.73 4.45
97 98 4.087892 CTCCGTGTGAGGCCAGGG 62.088 72.222 5.01 0.00 40.84 4.45
100 101 4.087892 CGTGTGAGGCCAGGGGAG 62.088 72.222 5.01 0.00 0.00 4.30
101 102 2.607750 GTGTGAGGCCAGGGGAGA 60.608 66.667 5.01 0.00 0.00 3.71
102 103 2.284921 TGTGAGGCCAGGGGAGAG 60.285 66.667 5.01 0.00 0.00 3.20
103 104 2.039624 GTGAGGCCAGGGGAGAGA 59.960 66.667 5.01 0.00 0.00 3.10
104 105 2.063378 GTGAGGCCAGGGGAGAGAG 61.063 68.421 5.01 0.00 0.00 3.20
105 106 2.249125 TGAGGCCAGGGGAGAGAGA 61.249 63.158 5.01 0.00 0.00 3.10
106 107 1.457455 GAGGCCAGGGGAGAGAGAG 60.457 68.421 5.01 0.00 0.00 3.20
107 108 1.938596 AGGCCAGGGGAGAGAGAGA 60.939 63.158 5.01 0.00 0.00 3.10
108 109 1.002274 GGCCAGGGGAGAGAGAGAA 59.998 63.158 0.00 0.00 0.00 2.87
109 110 0.618968 GGCCAGGGGAGAGAGAGAAA 60.619 60.000 0.00 0.00 0.00 2.52
110 111 0.539518 GCCAGGGGAGAGAGAGAAAC 59.460 60.000 0.00 0.00 0.00 2.78
111 112 1.199615 CCAGGGGAGAGAGAGAAACC 58.800 60.000 0.00 0.00 0.00 3.27
112 113 0.820871 CAGGGGAGAGAGAGAAACCG 59.179 60.000 0.00 0.00 0.00 4.44
113 114 0.705253 AGGGGAGAGAGAGAAACCGA 59.295 55.000 0.00 0.00 0.00 4.69
114 115 0.818938 GGGGAGAGAGAGAAACCGAC 59.181 60.000 0.00 0.00 0.00 4.79
115 116 1.546961 GGGAGAGAGAGAAACCGACA 58.453 55.000 0.00 0.00 0.00 4.35
116 117 1.202817 GGGAGAGAGAGAAACCGACAC 59.797 57.143 0.00 0.00 0.00 3.67
117 118 1.887198 GGAGAGAGAGAAACCGACACA 59.113 52.381 0.00 0.00 0.00 3.72
118 119 2.094957 GGAGAGAGAGAAACCGACACAG 60.095 54.545 0.00 0.00 0.00 3.66
119 120 2.814919 GAGAGAGAGAAACCGACACAGA 59.185 50.000 0.00 0.00 0.00 3.41
120 121 2.817258 AGAGAGAGAAACCGACACAGAG 59.183 50.000 0.00 0.00 0.00 3.35
121 122 1.889829 AGAGAGAAACCGACACAGAGG 59.110 52.381 0.00 0.00 0.00 3.69
122 123 0.969894 AGAGAAACCGACACAGAGGG 59.030 55.000 0.00 0.00 0.00 4.30
123 124 0.966920 GAGAAACCGACACAGAGGGA 59.033 55.000 0.00 0.00 0.00 4.20
124 125 0.969894 AGAAACCGACACAGAGGGAG 59.030 55.000 0.00 0.00 0.00 4.30
125 126 0.037232 GAAACCGACACAGAGGGAGG 60.037 60.000 0.00 0.00 0.00 4.30
126 127 1.481056 AAACCGACACAGAGGGAGGG 61.481 60.000 0.00 0.00 0.00 4.30
127 128 2.037367 CCGACACAGAGGGAGGGA 59.963 66.667 0.00 0.00 0.00 4.20
128 129 2.055042 CCGACACAGAGGGAGGGAG 61.055 68.421 0.00 0.00 0.00 4.30
129 130 2.716017 CGACACAGAGGGAGGGAGC 61.716 68.421 0.00 0.00 0.00 4.70
130 131 2.284995 ACACAGAGGGAGGGAGCC 60.285 66.667 0.00 0.00 0.00 4.70
131 132 3.465403 CACAGAGGGAGGGAGCCG 61.465 72.222 0.00 0.00 0.00 5.52
132 133 3.673597 ACAGAGGGAGGGAGCCGA 61.674 66.667 0.00 0.00 0.00 5.54
133 134 2.837291 CAGAGGGAGGGAGCCGAG 60.837 72.222 0.00 0.00 0.00 4.63
134 135 4.150454 AGAGGGAGGGAGCCGAGG 62.150 72.222 0.00 0.00 0.00 4.63
151 152 3.394062 GCGCGTGCGTTGCAAAAT 61.394 55.556 16.27 0.00 41.47 1.82
152 153 2.756340 CGCGTGCGTTGCAAAATC 59.244 55.556 0.00 0.00 41.47 2.17
153 154 1.725625 CGCGTGCGTTGCAAAATCT 60.726 52.632 0.00 0.00 41.47 2.40
154 155 1.268113 CGCGTGCGTTGCAAAATCTT 61.268 50.000 0.00 0.00 41.47 2.40
155 156 1.680668 GCGTGCGTTGCAAAATCTTA 58.319 45.000 0.00 0.00 41.47 2.10
156 157 2.047769 GCGTGCGTTGCAAAATCTTAA 58.952 42.857 0.00 0.00 41.47 1.85
157 158 2.661195 GCGTGCGTTGCAAAATCTTAAT 59.339 40.909 0.00 0.00 41.47 1.40
158 159 3.121113 GCGTGCGTTGCAAAATCTTAATT 59.879 39.130 0.00 0.00 41.47 1.40
159 160 4.322274 GCGTGCGTTGCAAAATCTTAATTA 59.678 37.500 0.00 0.00 41.47 1.40
160 161 5.496969 GCGTGCGTTGCAAAATCTTAATTAG 60.497 40.000 0.00 0.00 41.47 1.73
161 162 5.567534 CGTGCGTTGCAAAATCTTAATTAGT 59.432 36.000 0.00 0.00 41.47 2.24
162 163 6.236941 CGTGCGTTGCAAAATCTTAATTAGTC 60.237 38.462 0.00 0.00 41.47 2.59
163 164 5.792962 TGCGTTGCAAAATCTTAATTAGTCG 59.207 36.000 0.00 0.00 34.76 4.18
164 165 5.227184 GCGTTGCAAAATCTTAATTAGTCGG 59.773 40.000 0.00 0.00 0.00 4.79
165 166 5.227184 CGTTGCAAAATCTTAATTAGTCGGC 59.773 40.000 0.00 0.00 0.00 5.54
166 167 4.904116 TGCAAAATCTTAATTAGTCGGCG 58.096 39.130 0.00 0.00 0.00 6.46
167 168 4.632251 TGCAAAATCTTAATTAGTCGGCGA 59.368 37.500 4.99 4.99 0.00 5.54
168 169 5.198274 GCAAAATCTTAATTAGTCGGCGAG 58.802 41.667 11.20 0.00 0.00 5.03
169 170 5.198274 CAAAATCTTAATTAGTCGGCGAGC 58.802 41.667 11.20 5.52 0.00 5.03
170 171 3.728076 ATCTTAATTAGTCGGCGAGCA 57.272 42.857 11.20 0.00 0.00 4.26
171 172 3.513680 TCTTAATTAGTCGGCGAGCAA 57.486 42.857 11.20 7.81 0.00 3.91
172 173 3.184541 TCTTAATTAGTCGGCGAGCAAC 58.815 45.455 11.20 0.00 0.00 4.17
173 174 1.930567 TAATTAGTCGGCGAGCAACC 58.069 50.000 11.20 0.00 0.00 3.77
174 175 0.249398 AATTAGTCGGCGAGCAACCT 59.751 50.000 11.20 5.95 0.00 3.50
175 176 0.179108 ATTAGTCGGCGAGCAACCTC 60.179 55.000 11.20 0.00 34.66 3.85
176 177 1.529152 TTAGTCGGCGAGCAACCTCA 61.529 55.000 11.20 0.00 38.00 3.86
177 178 1.320344 TAGTCGGCGAGCAACCTCAT 61.320 55.000 11.20 0.00 38.00 2.90
178 179 1.741770 GTCGGCGAGCAACCTCATT 60.742 57.895 11.20 0.00 38.00 2.57
179 180 1.447838 TCGGCGAGCAACCTCATTC 60.448 57.895 4.99 0.00 38.00 2.67
180 181 1.448540 CGGCGAGCAACCTCATTCT 60.449 57.895 0.00 0.00 38.00 2.40
181 182 0.179111 CGGCGAGCAACCTCATTCTA 60.179 55.000 0.00 0.00 38.00 2.10
182 183 1.576356 GGCGAGCAACCTCATTCTAG 58.424 55.000 0.00 0.00 38.00 2.43
183 184 1.576356 GCGAGCAACCTCATTCTAGG 58.424 55.000 0.00 0.00 42.82 3.02
223 224 8.587952 ACTACAAATTACCAAAACATTGCTTC 57.412 30.769 0.00 0.00 0.00 3.86
224 225 8.200792 ACTACAAATTACCAAAACATTGCTTCA 58.799 29.630 0.00 0.00 0.00 3.02
225 226 7.856145 ACAAATTACCAAAACATTGCTTCAA 57.144 28.000 0.00 0.00 0.00 2.69
226 227 8.273780 ACAAATTACCAAAACATTGCTTCAAA 57.726 26.923 0.00 0.00 0.00 2.69
227 228 8.397148 ACAAATTACCAAAACATTGCTTCAAAG 58.603 29.630 0.00 0.00 0.00 2.77
228 229 8.610896 CAAATTACCAAAACATTGCTTCAAAGA 58.389 29.630 0.00 0.00 0.00 2.52
229 230 7.951530 ATTACCAAAACATTGCTTCAAAGAG 57.048 32.000 0.00 0.00 0.00 2.85
230 231 4.122046 ACCAAAACATTGCTTCAAAGAGC 58.878 39.130 0.00 0.00 43.00 4.09
231 232 4.141869 ACCAAAACATTGCTTCAAAGAGCT 60.142 37.500 0.00 0.00 43.11 4.09
232 233 4.812626 CCAAAACATTGCTTCAAAGAGCTT 59.187 37.500 0.00 0.00 43.11 3.74
233 234 5.050567 CCAAAACATTGCTTCAAAGAGCTTC 60.051 40.000 0.00 0.00 43.11 3.86
260 261 0.754957 TGGTGCACTTTCCCCACAAG 60.755 55.000 17.98 0.00 0.00 3.16
264 265 2.805897 CACTTTCCCCACAAGTGCA 58.194 52.632 0.10 0.00 43.48 4.57
305 306 3.864686 CTCCAAATCCGGCGTGCG 61.865 66.667 6.01 0.00 0.00 5.34
480 483 4.181010 CCCCATGCCCGTCCTCTG 62.181 72.222 0.00 0.00 0.00 3.35
481 484 4.181010 CCCATGCCCGTCCTCTGG 62.181 72.222 0.00 0.00 0.00 3.86
482 485 3.083349 CCATGCCCGTCCTCTGGA 61.083 66.667 0.00 0.00 0.00 3.86
483 486 2.503061 CATGCCCGTCCTCTGGAG 59.497 66.667 0.00 0.00 29.39 3.86
487 490 2.716017 GCCCGTCCTCTGGAGTCTG 61.716 68.421 0.00 0.00 29.39 3.51
498 501 0.178973 TGGAGTCTGGACCAACGAGA 60.179 55.000 0.00 0.00 32.93 4.04
507 510 0.037605 GACCAACGAGATCAACCCGT 60.038 55.000 0.00 0.00 38.24 5.28
632 635 2.165362 TTTCACCGCACGCGATTCAC 62.165 55.000 15.93 0.00 42.83 3.18
766 769 3.995669 CACGTGTGGCGGTTCGTG 61.996 66.667 7.58 9.09 46.52 4.35
817 820 1.074084 TGGTTCGGCTTCAAATACCCA 59.926 47.619 0.00 0.00 0.00 4.51
860 872 1.337823 CCTTCCCTGGTACTCACAACG 60.338 57.143 0.00 0.00 0.00 4.10
965 996 0.043788 ACCAGGGTAGGGTAGGGTTC 59.956 60.000 0.00 0.00 36.72 3.62
968 999 0.641048 AGGGTAGGGTAGGGTTCCTC 59.359 60.000 0.00 0.00 34.61 3.71
969 1000 0.399662 GGGTAGGGTAGGGTTCCTCC 60.400 65.000 0.00 0.00 34.61 4.30
970 1001 0.758310 GGTAGGGTAGGGTTCCTCCG 60.758 65.000 0.00 0.00 34.61 4.63
971 1002 0.758310 GTAGGGTAGGGTTCCTCCGG 60.758 65.000 0.00 0.00 34.61 5.14
972 1003 0.925720 TAGGGTAGGGTTCCTCCGGA 60.926 60.000 2.93 2.93 34.61 5.14
973 1004 1.761271 GGGTAGGGTTCCTCCGGAG 60.761 68.421 25.36 25.36 34.61 4.63
1095 1126 3.465403 CAGGGGCTCGAGGACAGG 61.465 72.222 15.58 0.00 0.00 4.00
1191 1374 0.591659 GCGGTGTTTCTGGGAGTTTC 59.408 55.000 0.00 0.00 0.00 2.78
1193 1376 1.873591 CGGTGTTTCTGGGAGTTTCTG 59.126 52.381 0.00 0.00 0.00 3.02
1194 1377 2.230660 GGTGTTTCTGGGAGTTTCTGG 58.769 52.381 0.00 0.00 0.00 3.86
1205 1388 0.744281 AGTTTCTGGGTGCCGTTTTG 59.256 50.000 0.00 0.00 0.00 2.44
1206 1389 0.249280 GTTTCTGGGTGCCGTTTTGG 60.249 55.000 0.00 0.00 42.50 3.28
1211 1394 1.104577 TGGGTGCCGTTTTGGAGTTC 61.105 55.000 0.00 0.00 42.00 3.01
1212 1395 1.281656 GGTGCCGTTTTGGAGTTCG 59.718 57.895 0.00 0.00 42.00 3.95
1214 1397 1.153127 TGCCGTTTTGGAGTTCGGT 60.153 52.632 0.00 0.00 44.07 4.69
1215 1398 0.748729 TGCCGTTTTGGAGTTCGGTT 60.749 50.000 0.00 0.00 44.07 4.44
1216 1399 0.382873 GCCGTTTTGGAGTTCGGTTT 59.617 50.000 0.00 0.00 44.07 3.27
1219 1402 1.847818 GTTTTGGAGTTCGGTTTGGC 58.152 50.000 0.00 0.00 0.00 4.52
1222 1405 1.161563 TTGGAGTTCGGTTTGGCGTC 61.162 55.000 0.00 0.00 0.00 5.19
1224 1407 0.037975 GGAGTTCGGTTTGGCGTCTA 60.038 55.000 0.00 0.00 0.00 2.59
1225 1408 1.606224 GGAGTTCGGTTTGGCGTCTAA 60.606 52.381 0.00 0.00 0.00 2.10
1226 1409 1.458445 GAGTTCGGTTTGGCGTCTAAC 59.542 52.381 5.75 5.75 0.00 2.34
1240 1423 3.799035 CGTCTAACAATGTGCTGTGTTC 58.201 45.455 0.00 0.00 38.80 3.18
1259 1442 4.580835 GTGCAGACGAGAAGGACC 57.419 61.111 0.00 0.00 0.00 4.46
1324 1507 2.046507 GTGGAGAGCCTGCACCAG 60.047 66.667 13.43 0.00 44.99 4.00
1402 1595 0.730840 GGCGTAATGTGTGGTTAGGC 59.269 55.000 0.00 0.00 40.38 3.93
1403 1596 0.730840 GCGTAATGTGTGGTTAGGCC 59.269 55.000 0.00 0.00 37.11 5.19
1416 1609 1.204704 GTTAGGCCAAGTTTCATGCCC 59.795 52.381 5.01 0.00 45.14 5.36
1421 1614 2.487086 GGCCAAGTTTCATGCCCTTTTT 60.487 45.455 0.00 0.00 37.94 1.94
1454 1647 1.271840 GCCATGTGTGGGGTCTCCTA 61.272 60.000 0.00 0.00 46.14 2.94
1465 1658 4.703575 GTGGGGTCTCCTAATAACAAAACC 59.296 45.833 0.00 0.00 36.20 3.27
1475 1669 4.775058 AATAACAAAACCGTGCTGCATA 57.225 36.364 5.27 0.00 0.00 3.14
1501 1695 4.039245 TGCTGCTCTACTACTCTGTGTTTT 59.961 41.667 0.00 0.00 0.00 2.43
1502 1696 4.387256 GCTGCTCTACTACTCTGTGTTTTG 59.613 45.833 0.00 0.00 0.00 2.44
1503 1697 4.307432 TGCTCTACTACTCTGTGTTTTGC 58.693 43.478 0.00 0.00 0.00 3.68
1505 1699 4.799586 GCTCTACTACTCTGTGTTTTGCCA 60.800 45.833 0.00 0.00 0.00 4.92
1507 1701 3.275617 ACTACTCTGTGTTTTGCCACA 57.724 42.857 0.00 0.00 42.81 4.17
1522 1722 4.764679 TGCCACAGTGATAAACATGTTC 57.235 40.909 12.39 0.00 0.00 3.18
1537 1737 4.469657 ACATGTTCTTGCCTTAGGAAACA 58.530 39.130 0.69 6.91 0.00 2.83
1540 1740 3.630312 TGTTCTTGCCTTAGGAAACACAC 59.370 43.478 0.69 0.00 0.00 3.82
1553 1753 9.180678 CTTAGGAAACACACATTTGACATTTAC 57.819 33.333 0.00 0.00 0.00 2.01
1559 1759 8.578308 AACACACATTTGACATTTACATTCAG 57.422 30.769 0.00 0.00 0.00 3.02
1588 1788 6.758149 TCGACAACGCAGAAGAAAATAATAC 58.242 36.000 0.00 0.00 39.58 1.89
1595 1795 9.865321 AACGCAGAAGAAAATAATACTAGTACA 57.135 29.630 4.31 0.00 0.00 2.90
1636 1836 5.777802 CCATATGCTCTGTTACTACTCTGG 58.222 45.833 0.00 0.00 0.00 3.86
1655 1855 2.050077 GCACTTTTGCTGTCGGCC 60.050 61.111 0.00 0.00 46.17 6.13
1668 1868 3.206150 CTGTCGGCCAATGCTATTTACT 58.794 45.455 2.24 0.00 37.74 2.24
1669 1869 4.377021 CTGTCGGCCAATGCTATTTACTA 58.623 43.478 2.24 0.00 37.74 1.82
1670 1870 4.771903 TGTCGGCCAATGCTATTTACTAA 58.228 39.130 2.24 0.00 37.74 2.24
1671 1871 5.186942 TGTCGGCCAATGCTATTTACTAAA 58.813 37.500 2.24 0.00 37.74 1.85
1672 1872 5.648526 TGTCGGCCAATGCTATTTACTAAAA 59.351 36.000 2.24 0.00 37.74 1.52
1673 1873 6.320164 TGTCGGCCAATGCTATTTACTAAAAT 59.680 34.615 2.24 0.00 38.80 1.82
1674 1874 6.636850 GTCGGCCAATGCTATTTACTAAAATG 59.363 38.462 2.24 0.00 36.02 2.32
1808 2015 2.499289 CCAGTCAGCACTAGGAATCACT 59.501 50.000 0.00 0.00 0.00 3.41
1944 2151 3.506096 CTGTGCCTGGATGCTGCG 61.506 66.667 0.00 0.00 0.00 5.18
1972 2179 8.666573 CATGTAAGGCATCTGATCATTTATCTC 58.333 37.037 0.00 0.00 35.19 2.75
1974 2181 7.658982 TGTAAGGCATCTGATCATTTATCTCAC 59.341 37.037 0.00 0.00 35.45 3.51
2391 2606 7.758980 TGAATTGCATAATTGAGCGTTATTTGT 59.241 29.630 0.00 0.00 36.66 2.83
2436 2651 4.021192 TGTTTTGATCTCCTTTCCATTGCC 60.021 41.667 0.00 0.00 0.00 4.52
2499 2722 3.561960 TGAAGCAAGTGGCAGGTTCATAT 60.562 43.478 13.69 0.00 44.44 1.78
2507 2730 5.263599 AGTGGCAGGTTCATATTTCATTGA 58.736 37.500 0.00 0.00 0.00 2.57
2511 2734 6.889177 TGGCAGGTTCATATTTCATTGACTAA 59.111 34.615 0.00 0.00 0.00 2.24
2608 2835 6.735130 ACTACAAACCTTTTACATTGCACTC 58.265 36.000 0.00 0.00 0.00 3.51
2655 2882 4.455533 GTGGTTGCATCTTAATGTCACAGA 59.544 41.667 0.00 0.00 35.18 3.41
2684 2911 6.588348 TCTGCTATATTTCGTCACACAATG 57.412 37.500 0.00 0.00 0.00 2.82
2686 2913 6.476706 TCTGCTATATTTCGTCACACAATGAG 59.523 38.462 0.00 0.00 38.28 2.90
3030 3261 5.705441 TGTTATCCCAAGATCAGTTTGTGAC 59.295 40.000 0.00 0.00 38.28 3.67
3049 3280 8.994429 TTGTGACTGTCATTTTGTATTTTGTT 57.006 26.923 14.37 0.00 0.00 2.83
3107 3338 6.791887 ATAACATGTTGATCTAATCTGCCG 57.208 37.500 21.42 0.00 0.00 5.69
3113 3347 7.385205 ACATGTTGATCTAATCTGCCGTATTAC 59.615 37.037 0.00 0.00 0.00 1.89
3315 3549 5.088739 GTGGAAATGAATGTGAATGACGAC 58.911 41.667 0.00 0.00 0.00 4.34
3362 3596 6.238456 GGCTTTGTTGCTTTATTGCTCTTTTT 60.238 34.615 0.00 0.00 0.00 1.94
3371 3605 6.509997 GCTTTATTGCTCTTTTTGTTGGTGTG 60.510 38.462 0.00 0.00 0.00 3.82
3373 3607 1.134848 TGCTCTTTTTGTTGGTGTGGC 60.135 47.619 0.00 0.00 0.00 5.01
3384 3618 3.944650 TGTTGGTGTGGCATCATGTATAC 59.055 43.478 0.00 0.00 0.00 1.47
3557 3793 4.669206 TGCCATTTTCACAATCAAGTGT 57.331 36.364 0.00 0.00 40.37 3.55
3569 3805 4.216257 ACAATCAAGTGTTGAGCATGTACC 59.784 41.667 0.00 0.00 43.98 3.34
3577 3813 4.032900 GTGTTGAGCATGTACCGTTCATAG 59.967 45.833 0.00 0.00 0.00 2.23
3619 3857 5.870978 GCAAGATAATGCAGTTTTCACCATT 59.129 36.000 0.00 0.00 45.70 3.16
3675 3914 8.205512 TCTTACCTACAGTTTATCAAACACACA 58.794 33.333 4.73 0.00 43.79 3.72
3680 3919 6.751514 ACAGTTTATCAAACACACAAGACA 57.248 33.333 4.73 0.00 43.79 3.41
3686 3925 8.395633 GTTTATCAAACACACAAGACAAGTACT 58.604 33.333 0.00 0.00 41.04 2.73
3696 3935 6.655848 ACACAAGACAAGTACTGTAAACCAAA 59.344 34.615 0.00 0.00 38.84 3.28
3711 3950 5.508200 AAACCAAACGTATGACAACATGT 57.492 34.783 0.00 0.00 37.87 3.21
3794 4064 0.776810 TTGGGTGAATGCTGGGAAGA 59.223 50.000 0.00 0.00 0.00 2.87
3828 4098 3.545703 GCTAATCCATGTACTTGCCACT 58.454 45.455 3.24 0.00 0.00 4.00
3843 4113 4.574674 TGCCACTCACTCCAATCTAATT 57.425 40.909 0.00 0.00 0.00 1.40
3882 4152 3.580458 GCTCCTAGCTCATGAAAGGGATA 59.420 47.826 15.09 0.00 38.45 2.59
4088 4358 2.588314 CAGCGAGCCTGAGATGCC 60.588 66.667 0.00 0.00 44.64 4.40
4089 4359 2.763292 AGCGAGCCTGAGATGCCT 60.763 61.111 0.00 0.00 0.00 4.75
4181 4472 0.107456 ACAGCCATGGAGGATAAGCG 59.893 55.000 18.40 0.00 41.22 4.68
4186 4477 0.394192 CATGGAGGATAAGCGGCAGA 59.606 55.000 1.45 0.00 0.00 4.26
4205 4496 1.522355 CGGATGCGCAAGATGAGGT 60.522 57.895 17.11 0.00 43.02 3.85
4209 4500 1.263484 GATGCGCAAGATGAGGTGATG 59.737 52.381 17.11 0.00 43.02 3.07
4261 4552 2.673523 CCAAGGACAGGCAGGAGG 59.326 66.667 0.00 0.00 0.00 4.30
4411 4702 3.181474 GCTTTATCCGACTGACCTAGCTT 60.181 47.826 0.00 0.00 0.00 3.74
4454 4748 1.077429 GGGTGGGCAAGTCCAGATC 60.077 63.158 0.00 0.00 37.50 2.75
4470 4764 5.411977 GTCCAGATCTATGATTTGGATGCTG 59.588 44.000 18.51 4.02 39.86 4.41
4471 4765 5.072736 TCCAGATCTATGATTTGGATGCTGT 59.927 40.000 13.59 0.00 33.21 4.40
4472 4766 5.181433 CCAGATCTATGATTTGGATGCTGTG 59.819 44.000 10.49 0.00 0.00 3.66
4473 4767 5.763698 CAGATCTATGATTTGGATGCTGTGT 59.236 40.000 0.00 0.00 0.00 3.72
4474 4768 6.932960 CAGATCTATGATTTGGATGCTGTGTA 59.067 38.462 0.00 0.00 0.00 2.90
4475 4769 7.443272 CAGATCTATGATTTGGATGCTGTGTAA 59.557 37.037 0.00 0.00 0.00 2.41
4489 4783 5.535333 TGCTGTGTAAGTGTAAAGTAGTCC 58.465 41.667 0.00 0.00 0.00 3.85
4546 4840 3.149196 CAGTGTTGGTTTACTGCTGGAT 58.851 45.455 0.00 0.00 38.01 3.41
4547 4841 3.569701 CAGTGTTGGTTTACTGCTGGATT 59.430 43.478 0.00 0.00 38.01 3.01
4594 4888 3.990469 CCTGGCTCGTTATTATACAGCTG 59.010 47.826 13.48 13.48 0.00 4.24
4618 4912 4.634184 ATGCTTTCAGCTGCTTGATTAG 57.366 40.909 9.47 3.94 42.97 1.73
4620 4914 4.267536 TGCTTTCAGCTGCTTGATTAGAT 58.732 39.130 9.47 0.00 42.97 1.98
4621 4915 5.430886 TGCTTTCAGCTGCTTGATTAGATA 58.569 37.500 9.47 0.00 42.97 1.98
4622 4916 5.295292 TGCTTTCAGCTGCTTGATTAGATAC 59.705 40.000 9.47 0.00 42.97 2.24
4623 4917 5.277731 GCTTTCAGCTGCTTGATTAGATACC 60.278 44.000 9.47 0.00 38.45 2.73
4624 4918 4.342862 TCAGCTGCTTGATTAGATACCC 57.657 45.455 9.47 0.00 0.00 3.69
4625 4919 3.969976 TCAGCTGCTTGATTAGATACCCT 59.030 43.478 9.47 0.00 0.00 4.34
4626 4920 4.063689 CAGCTGCTTGATTAGATACCCTG 58.936 47.826 0.00 0.00 0.00 4.45
4627 4921 3.969976 AGCTGCTTGATTAGATACCCTGA 59.030 43.478 0.00 0.00 0.00 3.86
4628 4922 4.410228 AGCTGCTTGATTAGATACCCTGAA 59.590 41.667 0.00 0.00 0.00 3.02
4629 4923 4.513318 GCTGCTTGATTAGATACCCTGAAC 59.487 45.833 0.00 0.00 0.00 3.18
4630 4924 5.674525 CTGCTTGATTAGATACCCTGAACA 58.325 41.667 0.00 0.00 0.00 3.18
4631 4925 6.252599 TGCTTGATTAGATACCCTGAACAT 57.747 37.500 0.00 0.00 0.00 2.71
4632 4926 7.373617 TGCTTGATTAGATACCCTGAACATA 57.626 36.000 0.00 0.00 0.00 2.29
4633 4927 7.217200 TGCTTGATTAGATACCCTGAACATAC 58.783 38.462 0.00 0.00 0.00 2.39
4634 4928 6.651225 GCTTGATTAGATACCCTGAACATACC 59.349 42.308 0.00 0.00 0.00 2.73
4672 4966 2.191128 ACTGACCAAGAACATCCAGC 57.809 50.000 0.00 0.00 0.00 4.85
4677 4971 2.552315 GACCAAGAACATCCAGCGAAAA 59.448 45.455 0.00 0.00 0.00 2.29
4686 4980 7.920738 AGAACATCCAGCGAAAAATATACTTC 58.079 34.615 0.00 0.00 0.00 3.01
4691 4985 9.692749 CATCCAGCGAAAAATATACTTCTACTA 57.307 33.333 0.00 0.00 0.00 1.82
4729 5023 0.679505 CACTCGTCTGGACAAAGGGA 59.320 55.000 1.63 0.00 0.00 4.20
4773 5086 4.767255 CTCTCTGGCGGCACCACC 62.767 72.222 7.97 0.00 46.36 4.61
4789 5102 2.203280 CCACGTTTGGGTGAGGCA 60.203 61.111 0.00 0.00 40.38 4.75
4793 5137 1.362355 CGTTTGGGTGAGGCAAACC 59.638 57.895 0.00 0.19 35.95 3.27
4914 5260 6.371809 TCTTATTGTATCCAAACCGAATGC 57.628 37.500 0.00 0.00 33.44 3.56
4944 5295 9.981114 AGTAGTTCATTGTCAAAAATTAAAGGG 57.019 29.630 0.00 0.00 0.00 3.95
4952 5306 9.913310 ATTGTCAAAAATTAAAGGGAAAAAGGA 57.087 25.926 0.00 0.00 0.00 3.36
5125 5486 6.815089 AGAAACAGTACAAAAATTGGATGCA 58.185 32.000 0.00 0.00 34.12 3.96
5137 5498 1.565067 TGGATGCAGAGCAGAGAGAA 58.435 50.000 0.00 0.00 43.65 2.87
5224 5585 2.231235 TCAGTTACAGCGAGCTGATCAA 59.769 45.455 29.11 16.79 46.30 2.57
5226 5587 3.433274 CAGTTACAGCGAGCTGATCAAAA 59.567 43.478 29.11 12.84 46.30 2.44
5228 5589 1.160137 ACAGCGAGCTGATCAAAACC 58.840 50.000 29.11 0.00 46.30 3.27
5295 5656 2.362736 CTCAACATGACCATGGGTGAG 58.637 52.381 18.09 21.02 42.82 3.51
5303 5664 2.605607 CCATGGGTGAGTGGCCTCA 61.606 63.158 2.85 0.00 45.44 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.787473 TGAGGGGATGTTCACATGTC 57.213 50.000 0.00 0.00 36.57 3.06
2 3 1.679680 GCATGAGGGGATGTTCACATG 59.320 52.381 0.00 0.00 36.57 3.21
3 4 1.410648 GGCATGAGGGGATGTTCACAT 60.411 52.381 0.00 0.00 39.70 3.21
4 5 0.034186 GGCATGAGGGGATGTTCACA 60.034 55.000 0.00 0.00 0.00 3.58
6 7 1.224315 CGGCATGAGGGGATGTTCA 59.776 57.895 0.00 0.00 0.00 3.18
7 8 1.097547 CACGGCATGAGGGGATGTTC 61.098 60.000 0.00 0.00 0.00 3.18
8 9 1.077501 CACGGCATGAGGGGATGTT 60.078 57.895 0.00 0.00 0.00 2.71
9 10 2.591753 CACGGCATGAGGGGATGT 59.408 61.111 0.00 0.00 0.00 3.06
10 11 2.203252 CCACGGCATGAGGGGATG 60.203 66.667 4.05 0.00 0.00 3.51
11 12 4.195334 GCCACGGCATGAGGGGAT 62.195 66.667 13.32 0.00 41.49 3.85
13 14 4.431131 AAGCCACGGCATGAGGGG 62.431 66.667 11.35 0.26 44.88 4.79
14 15 1.971505 TAGAAGCCACGGCATGAGGG 61.972 60.000 11.35 0.00 44.88 4.30
15 16 0.531532 CTAGAAGCCACGGCATGAGG 60.532 60.000 11.35 0.00 44.88 3.86
16 17 1.156645 GCTAGAAGCCACGGCATGAG 61.157 60.000 11.35 3.10 44.88 2.90
17 18 1.153369 GCTAGAAGCCACGGCATGA 60.153 57.895 11.35 0.00 44.88 3.07
18 19 3.414272 GCTAGAAGCCACGGCATG 58.586 61.111 11.35 0.00 44.88 4.06
27 28 3.429684 GGTTGAGTAGAGTGGCTAGAAGC 60.430 52.174 0.00 0.00 41.46 3.86
28 29 3.181495 CGGTTGAGTAGAGTGGCTAGAAG 60.181 52.174 0.00 0.00 0.00 2.85
29 30 2.753452 CGGTTGAGTAGAGTGGCTAGAA 59.247 50.000 0.00 0.00 0.00 2.10
30 31 2.290768 ACGGTTGAGTAGAGTGGCTAGA 60.291 50.000 0.00 0.00 0.00 2.43
31 32 2.093106 ACGGTTGAGTAGAGTGGCTAG 58.907 52.381 0.00 0.00 0.00 3.42
32 33 1.816835 CACGGTTGAGTAGAGTGGCTA 59.183 52.381 0.00 0.00 0.00 3.93
33 34 0.603569 CACGGTTGAGTAGAGTGGCT 59.396 55.000 0.00 0.00 0.00 4.75
34 35 0.601558 TCACGGTTGAGTAGAGTGGC 59.398 55.000 0.00 0.00 33.98 5.01
35 36 3.380479 TTTCACGGTTGAGTAGAGTGG 57.620 47.619 0.00 0.00 31.71 4.00
36 37 4.369182 ACTTTTCACGGTTGAGTAGAGTG 58.631 43.478 0.00 0.00 31.71 3.51
37 38 4.667519 ACTTTTCACGGTTGAGTAGAGT 57.332 40.909 0.00 0.00 31.71 3.24
38 39 6.308282 GTGATACTTTTCACGGTTGAGTAGAG 59.692 42.308 0.00 0.00 36.93 2.43
39 40 6.154445 GTGATACTTTTCACGGTTGAGTAGA 58.846 40.000 0.00 0.00 36.93 2.59
40 41 6.390987 GTGATACTTTTCACGGTTGAGTAG 57.609 41.667 0.00 0.00 36.93 2.57
50 51 4.151867 GTGTTCCTCCGTGATACTTTTCAC 59.848 45.833 0.00 0.00 42.10 3.18
51 52 4.312443 GTGTTCCTCCGTGATACTTTTCA 58.688 43.478 0.00 0.00 0.00 2.69
52 53 3.683340 GGTGTTCCTCCGTGATACTTTTC 59.317 47.826 0.00 0.00 0.00 2.29
53 54 3.671716 GGTGTTCCTCCGTGATACTTTT 58.328 45.455 0.00 0.00 0.00 2.27
54 55 2.353406 CGGTGTTCCTCCGTGATACTTT 60.353 50.000 0.00 0.00 42.62 2.66
55 56 1.203994 CGGTGTTCCTCCGTGATACTT 59.796 52.381 0.00 0.00 42.62 2.24
56 57 0.815734 CGGTGTTCCTCCGTGATACT 59.184 55.000 0.00 0.00 42.62 2.12
57 58 0.179119 CCGGTGTTCCTCCGTGATAC 60.179 60.000 0.00 0.00 45.63 2.24
58 59 1.324740 CCCGGTGTTCCTCCGTGATA 61.325 60.000 0.00 0.00 45.63 2.15
59 60 2.656069 CCCGGTGTTCCTCCGTGAT 61.656 63.158 0.00 0.00 45.63 3.06
60 61 3.307906 CCCGGTGTTCCTCCGTGA 61.308 66.667 0.00 0.00 45.63 4.35
61 62 4.388499 CCCCGGTGTTCCTCCGTG 62.388 72.222 0.00 0.00 45.63 4.94
65 66 4.097361 GAGCCCCCGGTGTTCCTC 62.097 72.222 0.00 0.00 0.00 3.71
78 79 4.767255 CTGGCCTCACACGGAGCC 62.767 72.222 3.32 0.00 42.62 4.70
79 80 4.767255 CCTGGCCTCACACGGAGC 62.767 72.222 3.32 0.00 42.62 4.70
80 81 4.087892 CCCTGGCCTCACACGGAG 62.088 72.222 3.32 0.00 43.65 4.63
83 84 4.087892 CTCCCCTGGCCTCACACG 62.088 72.222 3.32 0.00 0.00 4.49
84 85 2.607750 TCTCCCCTGGCCTCACAC 60.608 66.667 3.32 0.00 0.00 3.82
85 86 2.284921 CTCTCCCCTGGCCTCACA 60.285 66.667 3.32 0.00 0.00 3.58
86 87 2.039624 TCTCTCCCCTGGCCTCAC 59.960 66.667 3.32 0.00 0.00 3.51
87 88 2.235602 CTCTCTCTCCCCTGGCCTCA 62.236 65.000 3.32 0.00 0.00 3.86
88 89 1.457455 CTCTCTCTCCCCTGGCCTC 60.457 68.421 3.32 0.00 0.00 4.70
89 90 1.522917 TTCTCTCTCTCCCCTGGCCT 61.523 60.000 3.32 0.00 0.00 5.19
90 91 0.618968 TTTCTCTCTCTCCCCTGGCC 60.619 60.000 0.00 0.00 0.00 5.36
91 92 0.539518 GTTTCTCTCTCTCCCCTGGC 59.460 60.000 0.00 0.00 0.00 4.85
92 93 1.199615 GGTTTCTCTCTCTCCCCTGG 58.800 60.000 0.00 0.00 0.00 4.45
93 94 0.820871 CGGTTTCTCTCTCTCCCCTG 59.179 60.000 0.00 0.00 0.00 4.45
94 95 0.705253 TCGGTTTCTCTCTCTCCCCT 59.295 55.000 0.00 0.00 0.00 4.79
95 96 0.818938 GTCGGTTTCTCTCTCTCCCC 59.181 60.000 0.00 0.00 0.00 4.81
96 97 1.202817 GTGTCGGTTTCTCTCTCTCCC 59.797 57.143 0.00 0.00 0.00 4.30
97 98 1.887198 TGTGTCGGTTTCTCTCTCTCC 59.113 52.381 0.00 0.00 0.00 3.71
98 99 2.814919 TCTGTGTCGGTTTCTCTCTCTC 59.185 50.000 0.00 0.00 0.00 3.20
99 100 2.817258 CTCTGTGTCGGTTTCTCTCTCT 59.183 50.000 0.00 0.00 0.00 3.10
100 101 2.094957 CCTCTGTGTCGGTTTCTCTCTC 60.095 54.545 0.00 0.00 0.00 3.20
101 102 1.889829 CCTCTGTGTCGGTTTCTCTCT 59.110 52.381 0.00 0.00 0.00 3.10
102 103 1.067495 CCCTCTGTGTCGGTTTCTCTC 60.067 57.143 0.00 0.00 0.00 3.20
103 104 0.969894 CCCTCTGTGTCGGTTTCTCT 59.030 55.000 0.00 0.00 0.00 3.10
104 105 0.966920 TCCCTCTGTGTCGGTTTCTC 59.033 55.000 0.00 0.00 0.00 2.87
105 106 0.969894 CTCCCTCTGTGTCGGTTTCT 59.030 55.000 0.00 0.00 0.00 2.52
106 107 0.037232 CCTCCCTCTGTGTCGGTTTC 60.037 60.000 0.00 0.00 0.00 2.78
107 108 1.481056 CCCTCCCTCTGTGTCGGTTT 61.481 60.000 0.00 0.00 0.00 3.27
108 109 1.913762 CCCTCCCTCTGTGTCGGTT 60.914 63.158 0.00 0.00 0.00 4.44
109 110 2.283966 CCCTCCCTCTGTGTCGGT 60.284 66.667 0.00 0.00 0.00 4.69
110 111 2.037367 TCCCTCCCTCTGTGTCGG 59.963 66.667 0.00 0.00 0.00 4.79
111 112 2.716017 GCTCCCTCCCTCTGTGTCG 61.716 68.421 0.00 0.00 0.00 4.35
112 113 2.363172 GGCTCCCTCCCTCTGTGTC 61.363 68.421 0.00 0.00 0.00 3.67
113 114 2.284995 GGCTCCCTCCCTCTGTGT 60.285 66.667 0.00 0.00 0.00 3.72
114 115 3.465403 CGGCTCCCTCCCTCTGTG 61.465 72.222 0.00 0.00 0.00 3.66
115 116 3.670629 CTCGGCTCCCTCCCTCTGT 62.671 68.421 0.00 0.00 0.00 3.41
116 117 2.837291 CTCGGCTCCCTCCCTCTG 60.837 72.222 0.00 0.00 0.00 3.35
117 118 4.150454 CCTCGGCTCCCTCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
134 135 3.320379 GATTTTGCAACGCACGCGC 62.320 57.895 12.02 0.00 44.19 6.86
135 136 1.268113 AAGATTTTGCAACGCACGCG 61.268 50.000 10.36 10.36 38.71 6.01
136 137 1.680668 TAAGATTTTGCAACGCACGC 58.319 45.000 0.00 0.00 38.71 5.34
137 138 4.884257 AATTAAGATTTTGCAACGCACG 57.116 36.364 0.00 0.00 38.71 5.34
138 139 6.236941 CGACTAATTAAGATTTTGCAACGCAC 60.237 38.462 0.00 0.00 38.71 5.34
139 140 5.792962 CGACTAATTAAGATTTTGCAACGCA 59.207 36.000 0.00 0.00 36.47 5.24
140 141 5.227184 CCGACTAATTAAGATTTTGCAACGC 59.773 40.000 0.00 0.00 0.00 4.84
141 142 5.227184 GCCGACTAATTAAGATTTTGCAACG 59.773 40.000 0.00 0.00 0.00 4.10
142 143 5.227184 CGCCGACTAATTAAGATTTTGCAAC 59.773 40.000 0.00 0.00 0.00 4.17
143 144 5.122554 TCGCCGACTAATTAAGATTTTGCAA 59.877 36.000 0.00 0.00 0.00 4.08
144 145 4.632251 TCGCCGACTAATTAAGATTTTGCA 59.368 37.500 0.00 0.00 0.00 4.08
145 146 5.151632 TCGCCGACTAATTAAGATTTTGC 57.848 39.130 0.00 0.00 0.00 3.68
146 147 5.198274 GCTCGCCGACTAATTAAGATTTTG 58.802 41.667 0.00 0.00 0.00 2.44
147 148 4.873827 TGCTCGCCGACTAATTAAGATTTT 59.126 37.500 0.00 0.00 0.00 1.82
148 149 4.439057 TGCTCGCCGACTAATTAAGATTT 58.561 39.130 0.00 0.00 0.00 2.17
149 150 4.054780 TGCTCGCCGACTAATTAAGATT 57.945 40.909 0.00 0.00 0.00 2.40
150 151 3.728076 TGCTCGCCGACTAATTAAGAT 57.272 42.857 0.00 0.00 0.00 2.40
151 152 3.184541 GTTGCTCGCCGACTAATTAAGA 58.815 45.455 0.00 0.00 0.00 2.10
152 153 2.284417 GGTTGCTCGCCGACTAATTAAG 59.716 50.000 0.00 0.00 0.00 1.85
153 154 2.093869 AGGTTGCTCGCCGACTAATTAA 60.094 45.455 0.00 0.00 0.00 1.40
154 155 1.479323 AGGTTGCTCGCCGACTAATTA 59.521 47.619 0.00 0.00 0.00 1.40
155 156 0.249398 AGGTTGCTCGCCGACTAATT 59.751 50.000 0.00 0.00 0.00 1.40
156 157 0.179108 GAGGTTGCTCGCCGACTAAT 60.179 55.000 0.00 0.00 0.00 1.73
157 158 1.214589 GAGGTTGCTCGCCGACTAA 59.785 57.895 0.00 0.00 0.00 2.24
158 159 1.320344 ATGAGGTTGCTCGCCGACTA 61.320 55.000 0.00 0.00 0.00 2.59
159 160 2.172483 AATGAGGTTGCTCGCCGACT 62.172 55.000 0.00 0.00 0.00 4.18
160 161 1.696832 GAATGAGGTTGCTCGCCGAC 61.697 60.000 0.00 0.00 0.00 4.79
161 162 1.447838 GAATGAGGTTGCTCGCCGA 60.448 57.895 0.00 0.00 0.00 5.54
162 163 0.179111 TAGAATGAGGTTGCTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
163 164 1.576356 CTAGAATGAGGTTGCTCGCC 58.424 55.000 0.00 0.00 0.00 5.54
164 165 1.576356 CCTAGAATGAGGTTGCTCGC 58.424 55.000 0.00 0.00 0.00 5.03
197 198 9.685828 GAAGCAATGTTTTGGTAATTTGTAGTA 57.314 29.630 0.00 0.00 42.53 1.82
198 199 8.200792 TGAAGCAATGTTTTGGTAATTTGTAGT 58.799 29.630 0.00 0.00 42.53 2.73
199 200 8.586570 TGAAGCAATGTTTTGGTAATTTGTAG 57.413 30.769 0.00 0.00 42.53 2.74
200 201 8.948631 TTGAAGCAATGTTTTGGTAATTTGTA 57.051 26.923 0.00 0.00 42.53 2.41
201 202 7.856145 TTGAAGCAATGTTTTGGTAATTTGT 57.144 28.000 0.00 0.00 42.53 2.83
202 203 8.610896 TCTTTGAAGCAATGTTTTGGTAATTTG 58.389 29.630 0.00 0.00 42.53 2.32
203 204 8.729805 TCTTTGAAGCAATGTTTTGGTAATTT 57.270 26.923 0.00 0.00 42.53 1.82
204 205 7.041848 GCTCTTTGAAGCAATGTTTTGGTAATT 60.042 33.333 0.00 0.00 42.53 1.40
205 206 6.424812 GCTCTTTGAAGCAATGTTTTGGTAAT 59.575 34.615 0.00 0.00 42.53 1.89
206 207 5.752955 GCTCTTTGAAGCAATGTTTTGGTAA 59.247 36.000 0.00 0.00 42.53 2.85
207 208 5.068987 AGCTCTTTGAAGCAATGTTTTGGTA 59.931 36.000 0.00 0.00 45.00 3.25
208 209 4.122046 GCTCTTTGAAGCAATGTTTTGGT 58.878 39.130 0.00 0.00 45.16 3.67
209 210 4.374399 AGCTCTTTGAAGCAATGTTTTGG 58.626 39.130 0.00 0.00 45.00 3.28
210 211 5.751990 AGAAGCTCTTTGAAGCAATGTTTTG 59.248 36.000 0.00 0.00 45.00 2.44
211 212 5.910614 AGAAGCTCTTTGAAGCAATGTTTT 58.089 33.333 0.00 0.00 45.00 2.43
212 213 5.068198 TGAGAAGCTCTTTGAAGCAATGTTT 59.932 36.000 0.00 0.00 45.00 2.83
213 214 4.581824 TGAGAAGCTCTTTGAAGCAATGTT 59.418 37.500 0.00 0.00 45.00 2.71
214 215 4.023365 GTGAGAAGCTCTTTGAAGCAATGT 60.023 41.667 0.00 0.00 45.00 2.71
215 216 4.023450 TGTGAGAAGCTCTTTGAAGCAATG 60.023 41.667 0.00 0.00 45.00 2.82
216 217 4.139786 TGTGAGAAGCTCTTTGAAGCAAT 58.860 39.130 0.00 0.00 45.00 3.56
217 218 3.544684 TGTGAGAAGCTCTTTGAAGCAA 58.455 40.909 0.00 0.00 45.00 3.91
218 219 3.198409 TGTGAGAAGCTCTTTGAAGCA 57.802 42.857 0.00 0.00 45.00 3.91
219 220 4.762956 AATGTGAGAAGCTCTTTGAAGC 57.237 40.909 0.00 0.00 42.82 3.86
220 221 5.009410 ACCAAATGTGAGAAGCTCTTTGAAG 59.991 40.000 0.00 0.00 0.00 3.02
221 222 4.889409 ACCAAATGTGAGAAGCTCTTTGAA 59.111 37.500 0.00 0.00 0.00 2.69
222 223 4.464008 ACCAAATGTGAGAAGCTCTTTGA 58.536 39.130 0.00 0.00 0.00 2.69
223 224 4.843220 ACCAAATGTGAGAAGCTCTTTG 57.157 40.909 0.00 0.00 0.00 2.77
247 248 1.859302 TTTGCACTTGTGGGGAAAGT 58.141 45.000 2.81 0.00 38.40 2.66
260 261 5.642919 TGAGGCAATAAAATGGATTTTGCAC 59.357 36.000 7.47 2.90 40.00 4.57
264 265 5.339118 GGGGTGAGGCAATAAAATGGATTTT 60.339 40.000 3.02 3.02 42.21 1.82
346 348 4.812476 TTCGTCCCGCCATCGCTG 62.812 66.667 0.00 0.00 0.00 5.18
359 361 2.582052 TGAGACAGCCCAAATTTTCGT 58.418 42.857 0.00 0.00 0.00 3.85
369 371 4.379499 CGGTAAATCTTTTTGAGACAGCCC 60.379 45.833 0.00 0.00 37.17 5.19
422 424 1.574702 GGGTTCTGGGCTTTTCGTCG 61.575 60.000 0.00 0.00 0.00 5.12
423 425 1.241990 GGGGTTCTGGGCTTTTCGTC 61.242 60.000 0.00 0.00 0.00 4.20
424 426 1.228459 GGGGTTCTGGGCTTTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
425 427 2.332654 CGGGGTTCTGGGCTTTTCG 61.333 63.158 0.00 0.00 0.00 3.46
480 483 1.135333 GATCTCGTTGGTCCAGACTCC 59.865 57.143 0.00 0.00 0.00 3.85
481 484 1.819288 TGATCTCGTTGGTCCAGACTC 59.181 52.381 0.00 0.00 0.00 3.36
482 485 1.924731 TGATCTCGTTGGTCCAGACT 58.075 50.000 0.00 0.00 0.00 3.24
483 486 2.338500 GTTGATCTCGTTGGTCCAGAC 58.662 52.381 0.00 0.00 0.00 3.51
487 490 0.739813 CGGGTTGATCTCGTTGGTCC 60.740 60.000 0.00 0.00 34.99 4.46
498 501 1.129058 GGTCTATGGGACGGGTTGAT 58.871 55.000 0.00 0.00 45.35 2.57
507 510 1.119684 CGTGGACATGGTCTATGGGA 58.880 55.000 0.00 0.00 41.25 4.37
728 731 3.072468 CTGCATGTGGGGCTTGGG 61.072 66.667 0.00 0.00 0.00 4.12
817 820 1.562783 CGGAGAAGGAGGAGAGGTTT 58.437 55.000 0.00 0.00 0.00 3.27
860 872 0.035439 TTGAGGATTTCGGGAGTGGC 60.035 55.000 0.00 0.00 0.00 5.01
901 913 1.033574 AAATACGAGAGCGGAGGGAG 58.966 55.000 0.00 0.00 43.17 4.30
902 914 0.744874 CAAATACGAGAGCGGAGGGA 59.255 55.000 0.00 0.00 43.17 4.20
907 919 3.927142 GGAATATCCAAATACGAGAGCGG 59.073 47.826 0.00 0.00 38.01 5.52
968 999 2.158711 GGAAAATACCTAACCCCTCCGG 60.159 54.545 0.00 0.00 37.81 5.14
969 1000 2.484241 CGGAAAATACCTAACCCCTCCG 60.484 54.545 0.00 0.00 38.69 4.63
970 1001 2.773661 TCGGAAAATACCTAACCCCTCC 59.226 50.000 0.00 0.00 0.00 4.30
971 1002 3.432749 GGTCGGAAAATACCTAACCCCTC 60.433 52.174 0.00 0.00 32.72 4.30
972 1003 2.507058 GGTCGGAAAATACCTAACCCCT 59.493 50.000 0.00 0.00 32.72 4.79
973 1004 2.742856 CGGTCGGAAAATACCTAACCCC 60.743 54.545 0.00 0.00 33.04 4.95
974 1005 2.554142 CGGTCGGAAAATACCTAACCC 58.446 52.381 0.00 0.00 33.04 4.11
975 1006 1.935873 GCGGTCGGAAAATACCTAACC 59.064 52.381 0.00 0.00 33.34 2.85
976 1007 1.589779 CGCGGTCGGAAAATACCTAAC 59.410 52.381 0.00 0.00 33.34 2.34
977 1008 1.925229 CGCGGTCGGAAAATACCTAA 58.075 50.000 0.00 0.00 33.34 2.69
978 1009 3.646650 CGCGGTCGGAAAATACCTA 57.353 52.632 0.00 0.00 33.34 3.08
979 1010 4.507879 CGCGGTCGGAAAATACCT 57.492 55.556 0.00 0.00 33.34 3.08
1169 1201 3.530910 CTCCCAGAAACACCGCCGT 62.531 63.158 0.00 0.00 0.00 5.68
1181 1364 1.303643 GGCACCCAGAAACTCCCAG 60.304 63.158 0.00 0.00 0.00 4.45
1182 1365 2.843545 GGCACCCAGAAACTCCCA 59.156 61.111 0.00 0.00 0.00 4.37
1191 1374 1.106944 AACTCCAAAACGGCACCCAG 61.107 55.000 0.00 0.00 33.14 4.45
1193 1376 1.658114 GAACTCCAAAACGGCACCC 59.342 57.895 0.00 0.00 33.14 4.61
1194 1377 1.281656 CGAACTCCAAAACGGCACC 59.718 57.895 0.00 0.00 33.14 5.01
1205 1388 0.037975 TAGACGCCAAACCGAACTCC 60.038 55.000 0.00 0.00 0.00 3.85
1206 1389 1.458445 GTTAGACGCCAAACCGAACTC 59.542 52.381 0.00 0.00 0.00 3.01
1211 1394 1.533731 ACATTGTTAGACGCCAAACCG 59.466 47.619 0.00 0.00 0.00 4.44
1212 1395 2.920647 GCACATTGTTAGACGCCAAACC 60.921 50.000 0.00 0.00 0.00 3.27
1214 1397 2.031245 CAGCACATTGTTAGACGCCAAA 60.031 45.455 0.00 0.00 0.00 3.28
1215 1398 1.535028 CAGCACATTGTTAGACGCCAA 59.465 47.619 0.00 0.00 0.00 4.52
1216 1399 1.155889 CAGCACATTGTTAGACGCCA 58.844 50.000 0.00 0.00 0.00 5.69
1219 1402 3.363970 GGAACACAGCACATTGTTAGACG 60.364 47.826 0.00 0.00 36.06 4.18
1222 1405 2.548057 ACGGAACACAGCACATTGTTAG 59.452 45.455 0.00 0.00 36.06 2.34
1224 1407 1.065401 CACGGAACACAGCACATTGTT 59.935 47.619 0.00 0.00 38.67 2.83
1225 1408 0.662619 CACGGAACACAGCACATTGT 59.337 50.000 0.00 0.00 0.00 2.71
1226 1409 0.661187 GCACGGAACACAGCACATTG 60.661 55.000 0.00 0.00 0.00 2.82
1240 1423 1.444553 GTCCTTCTCGTCTGCACGG 60.445 63.158 0.00 0.00 46.70 4.94
1259 1442 4.520846 GTCCGCGCTCGCCATTTG 62.521 66.667 5.56 0.00 37.98 2.32
1279 1462 3.261897 AGATGACGGACTGGAACTTGAAT 59.738 43.478 0.00 0.00 0.00 2.57
1280 1463 2.632996 AGATGACGGACTGGAACTTGAA 59.367 45.455 0.00 0.00 0.00 2.69
1363 1556 0.387622 TCGTCCAAACTACCGAAGCG 60.388 55.000 0.00 0.00 0.00 4.68
1369 1562 0.527565 TACGCCTCGTCCAAACTACC 59.472 55.000 0.00 0.00 41.54 3.18
1421 1614 8.043710 CCCCACACATGGCTAAAAATAAAATAA 58.956 33.333 0.00 0.00 45.76 1.40
1423 1616 6.012945 ACCCCACACATGGCTAAAAATAAAAT 60.013 34.615 0.00 0.00 45.76 1.82
1424 1617 5.308237 ACCCCACACATGGCTAAAAATAAAA 59.692 36.000 0.00 0.00 45.76 1.52
1425 1618 4.841246 ACCCCACACATGGCTAAAAATAAA 59.159 37.500 0.00 0.00 45.76 1.40
1426 1619 4.421131 ACCCCACACATGGCTAAAAATAA 58.579 39.130 0.00 0.00 45.76 1.40
1427 1620 4.020543 GACCCCACACATGGCTAAAAATA 58.979 43.478 0.00 0.00 45.76 1.40
1428 1621 2.831526 GACCCCACACATGGCTAAAAAT 59.168 45.455 0.00 0.00 45.76 1.82
1429 1622 2.158385 AGACCCCACACATGGCTAAAAA 60.158 45.455 0.00 0.00 45.76 1.94
1438 1631 4.108570 TGTTATTAGGAGACCCCACACAT 58.891 43.478 0.00 0.00 37.41 3.21
1454 1647 3.658757 ATGCAGCACGGTTTTGTTATT 57.341 38.095 0.00 0.00 0.00 1.40
1475 1669 3.130164 CACAGAGTAGTAGAGCAGCACAT 59.870 47.826 0.00 0.00 0.00 3.21
1487 1681 3.275617 TGTGGCAAAACACAGAGTAGT 57.724 42.857 0.00 0.00 45.70 2.73
1501 1695 4.397420 AGAACATGTTTATCACTGTGGCA 58.603 39.130 13.36 0.85 0.00 4.92
1502 1696 5.156355 CAAGAACATGTTTATCACTGTGGC 58.844 41.667 13.36 0.00 0.00 5.01
1503 1697 5.156355 GCAAGAACATGTTTATCACTGTGG 58.844 41.667 13.36 0.48 0.00 4.17
1505 1699 5.072741 AGGCAAGAACATGTTTATCACTGT 58.927 37.500 13.36 0.00 0.00 3.55
1507 1701 6.375455 CCTAAGGCAAGAACATGTTTATCACT 59.625 38.462 13.36 6.40 0.00 3.41
1522 1722 4.853924 AATGTGTGTTTCCTAAGGCAAG 57.146 40.909 0.00 0.00 0.00 4.01
1553 1753 4.091365 TCTGCGTTGTCGATTTACTGAATG 59.909 41.667 0.00 0.00 39.71 2.67
1559 1759 4.640805 TTCTTCTGCGTTGTCGATTTAC 57.359 40.909 0.00 0.00 39.71 2.01
1669 1869 8.558700 GGCACAATTGATCAGTTTTTACATTTT 58.441 29.630 13.59 0.00 0.00 1.82
1670 1870 7.933033 AGGCACAATTGATCAGTTTTTACATTT 59.067 29.630 13.59 0.00 0.00 2.32
1671 1871 7.444299 AGGCACAATTGATCAGTTTTTACATT 58.556 30.769 13.59 0.00 0.00 2.71
1672 1872 6.996509 AGGCACAATTGATCAGTTTTTACAT 58.003 32.000 13.59 0.00 0.00 2.29
1673 1873 6.403866 AGGCACAATTGATCAGTTTTTACA 57.596 33.333 13.59 0.00 0.00 2.41
1674 1874 6.922957 TGAAGGCACAATTGATCAGTTTTTAC 59.077 34.615 13.59 0.00 0.00 2.01
1808 2015 2.224992 TGCAGCAACTAAATGGGAAGGA 60.225 45.455 0.00 0.00 0.00 3.36
1814 2021 2.421424 GAGGAGTGCAGCAACTAAATGG 59.579 50.000 0.00 0.00 0.00 3.16
1874 2081 0.803768 CAGACCATCTCAACGAGGCG 60.804 60.000 0.00 0.00 0.00 5.52
1944 2151 7.627939 GATAAATGATCAGATGCCTTACATGGC 60.628 40.741 0.09 0.00 42.62 4.40
2190 2397 7.978414 TGTATCTTCATGTTTCAAGCACAAAAA 59.022 29.630 0.00 0.00 0.00 1.94
2194 2401 5.764686 AGTGTATCTTCATGTTTCAAGCACA 59.235 36.000 0.00 0.00 0.00 4.57
2213 2420 9.355916 AGTCAATATCAACTGCTATAGAGTGTA 57.644 33.333 3.21 0.93 0.00 2.90
2214 2421 8.243961 AGTCAATATCAACTGCTATAGAGTGT 57.756 34.615 3.21 0.00 0.00 3.55
2296 2504 7.445402 CCCCACCTTACATAATCAAAGAGTATG 59.555 40.741 11.56 11.56 43.43 2.39
2391 2606 9.606631 AAACAAATTAGTTTAAGGAAACATGCA 57.393 25.926 0.00 0.00 46.30 3.96
2420 2635 3.830755 GCATATGGCAATGGAAAGGAGAT 59.169 43.478 4.56 0.00 43.97 2.75
2608 2835 5.063944 CCACCTCTATCACAAAAGATCAACG 59.936 44.000 0.00 0.00 0.00 4.10
2764 2991 6.400568 ACAAAATGAAGATGGCCAAACATAG 58.599 36.000 10.96 9.24 0.00 2.23
2765 2992 6.357579 ACAAAATGAAGATGGCCAAACATA 57.642 33.333 10.96 0.00 0.00 2.29
2814 3041 0.313043 CCAGAGGCAAACTGCTTGTG 59.687 55.000 1.49 1.49 42.15 3.33
2815 3042 0.106519 ACCAGAGGCAAACTGCTTGT 60.107 50.000 0.00 0.00 44.28 3.16
2896 3125 9.512588 AAGCGGATTCAATTAGATGATCTAAAT 57.487 29.630 17.86 7.90 41.72 1.40
2902 3131 5.048921 CAGCAAGCGGATTCAATTAGATGAT 60.049 40.000 0.00 0.00 0.00 2.45
2918 3147 5.484173 TTTGATAATTAGACCAGCAAGCG 57.516 39.130 0.00 0.00 0.00 4.68
3030 3261 9.874205 ATGGGATAACAAAATACAAAATGACAG 57.126 29.630 0.00 0.00 0.00 3.51
3045 3276 5.105392 GCCAAAACTGATCATGGGATAACAA 60.105 40.000 13.65 0.00 32.67 2.83
3049 3280 4.248174 TGCCAAAACTGATCATGGGATA 57.752 40.909 13.65 0.00 32.67 2.59
3096 3327 3.855895 GCTGCGTAATACGGCAGATTAGA 60.856 47.826 27.86 2.81 43.31 2.10
3207 3441 7.158021 ACATTCTGTTCAAAACAAGGTTTTCA 58.842 30.769 4.23 0.51 41.61 2.69
3315 3549 3.854666 CTTACAGAGGATATGATGGCCG 58.145 50.000 0.00 0.00 0.00 6.13
3362 3596 2.575805 TACATGATGCCACACCAACA 57.424 45.000 0.00 0.00 0.00 3.33
3371 3605 3.565482 CACAACAGGGTATACATGATGCC 59.435 47.826 12.75 1.66 39.54 4.40
3373 3607 7.386025 CAGATACACAACAGGGTATACATGATG 59.614 40.741 12.75 12.84 30.68 3.07
3557 3793 4.159693 AGACTATGAACGGTACATGCTCAA 59.840 41.667 0.00 0.00 0.00 3.02
3569 3805 4.324267 ACCTCCCAAAAAGACTATGAACG 58.676 43.478 0.00 0.00 0.00 3.95
3577 3813 1.754226 TGCACAACCTCCCAAAAAGAC 59.246 47.619 0.00 0.00 0.00 3.01
3655 3893 7.915508 TGTCTTGTGTGTTTGATAAACTGTAG 58.084 34.615 6.07 0.00 41.90 2.74
3675 3914 5.876460 ACGTTTGGTTTACAGTACTTGTCTT 59.124 36.000 0.00 0.00 41.29 3.01
3680 3919 6.985645 TGTCATACGTTTGGTTTACAGTACTT 59.014 34.615 6.15 0.00 0.00 2.24
3686 3925 6.038382 ACATGTTGTCATACGTTTGGTTTACA 59.962 34.615 6.15 6.43 32.47 2.41
3843 4113 7.829211 AGCTAGGAGCAAATGTAAAACAGATTA 59.171 33.333 0.64 0.00 45.56 1.75
3882 4152 3.899545 TTCTTCCCCCTCCGCGACT 62.900 63.158 8.23 0.00 0.00 4.18
3915 4185 2.973899 GTGCTGAGAGAAGGCGGA 59.026 61.111 0.00 0.00 0.00 5.54
3964 4234 3.677284 CTCCAGGCATGCTGCGAGT 62.677 63.158 18.92 0.00 46.21 4.18
3974 4244 2.806945 CTGGTTATTTCCTCCAGGCA 57.193 50.000 0.00 0.00 43.30 4.75
4049 4319 2.124612 CTCCGGATGTGCCATGCA 60.125 61.111 3.57 0.00 35.94 3.96
4058 4328 0.807667 CTCGCTGTTTCCTCCGGATG 60.808 60.000 3.57 1.17 0.00 3.51
4059 4329 1.517832 CTCGCTGTTTCCTCCGGAT 59.482 57.895 3.57 0.00 0.00 4.18
4065 4335 1.188219 TCTCAGGCTCGCTGTTTCCT 61.188 55.000 0.00 0.00 0.00 3.36
4073 4343 2.588314 CAGGCATCTCAGGCTCGC 60.588 66.667 0.00 0.00 43.24 5.03
4088 4358 1.002576 TGATTGAAGTTGTGTGCGCAG 60.003 47.619 12.22 0.00 0.00 5.18
4089 4359 1.002576 CTGATTGAAGTTGTGTGCGCA 60.003 47.619 5.66 5.66 0.00 6.09
4181 4472 3.869272 CTTGCGCATCCGTCTGCC 61.869 66.667 12.75 0.00 39.00 4.85
4186 4477 1.522355 CCTCATCTTGCGCATCCGT 60.522 57.895 12.75 0.00 36.67 4.69
4197 4488 1.520120 CGTGCGCATCACCTCATCT 60.520 57.895 15.91 0.00 42.69 2.90
4205 4496 3.816367 TTGACCACCGTGCGCATCA 62.816 57.895 15.91 9.57 0.00 3.07
4261 4552 1.007336 CGCTTGTACGTCTGGACCAC 61.007 60.000 0.00 0.00 0.00 4.16
4287 4578 1.227674 GGGTGGATGGCGATCAGAC 60.228 63.158 11.07 6.34 0.00 3.51
4323 4614 2.700773 GGAACCCCAAGACGCATGC 61.701 63.158 7.91 7.91 0.00 4.06
4411 4702 6.710744 CCTACAAAAGTCCTCTCAAAAGCTAA 59.289 38.462 0.00 0.00 0.00 3.09
4454 4748 6.317140 ACACTTACACAGCATCCAAATCATAG 59.683 38.462 0.00 0.00 0.00 2.23
4470 4764 6.006759 ACTCGGACTACTTTACACTTACAC 57.993 41.667 0.00 0.00 0.00 2.90
4471 4765 6.639632 AACTCGGACTACTTTACACTTACA 57.360 37.500 0.00 0.00 0.00 2.41
4472 4766 8.034058 TCTAACTCGGACTACTTTACACTTAC 57.966 38.462 0.00 0.00 0.00 2.34
4473 4767 8.097038 TCTCTAACTCGGACTACTTTACACTTA 58.903 37.037 0.00 0.00 0.00 2.24
4474 4768 6.939163 TCTCTAACTCGGACTACTTTACACTT 59.061 38.462 0.00 0.00 0.00 3.16
4475 4769 6.471146 TCTCTAACTCGGACTACTTTACACT 58.529 40.000 0.00 0.00 0.00 3.55
4489 4783 6.587990 ACACTGATCAACATTTCTCTAACTCG 59.412 38.462 0.00 0.00 0.00 4.18
4618 4912 3.458487 ACCCTTGGTATGTTCAGGGTATC 59.542 47.826 6.97 0.00 46.83 2.24
4620 4914 2.574369 CACCCTTGGTATGTTCAGGGTA 59.426 50.000 8.44 0.00 46.97 3.69
4621 4915 1.755200 ACCCTTGGTATGTTCAGGGT 58.245 50.000 2.68 2.68 44.23 4.34
4622 4916 1.354368 ACACCCTTGGTATGTTCAGGG 59.646 52.381 1.27 1.27 42.05 4.45
4623 4917 2.879103 ACACCCTTGGTATGTTCAGG 57.121 50.000 0.00 0.00 32.11 3.86
4624 4918 3.081804 GGAACACCCTTGGTATGTTCAG 58.918 50.000 23.52 0.48 39.11 3.02
4625 4919 2.443632 TGGAACACCCTTGGTATGTTCA 59.556 45.455 23.52 13.74 39.11 3.18
4626 4920 3.149005 TGGAACACCCTTGGTATGTTC 57.851 47.619 18.27 18.27 37.67 3.18
4677 4971 7.371936 CCGCTTGCTCTTAGTAGAAGTATATT 58.628 38.462 0.00 0.00 0.00 1.28
4686 4980 2.010145 TTGCCGCTTGCTCTTAGTAG 57.990 50.000 0.00 0.00 42.00 2.57
4691 4985 2.098117 GTGATAATTGCCGCTTGCTCTT 59.902 45.455 0.00 0.00 42.00 2.85
4729 5023 4.250116 TGCTGAATGGCGTAAATTGTTT 57.750 36.364 0.00 0.00 34.52 2.83
4773 5086 0.248866 GTTTGCCTCACCCAAACGTG 60.249 55.000 0.00 0.00 41.55 4.49
4774 5087 2.112029 GTTTGCCTCACCCAAACGT 58.888 52.632 1.84 0.00 41.55 3.99
4779 5092 0.250553 CTAACGGTTTGCCTCACCCA 60.251 55.000 0.00 0.00 0.00 4.51
4793 5137 6.897259 TCAAAAGAATCGATAACCCTAACG 57.103 37.500 0.00 0.00 0.00 3.18
4973 5327 9.739276 CATCCTTGGTATTTAGATTATAAGCCA 57.261 33.333 0.00 0.00 0.00 4.75
4980 5334 7.798071 ACCGAACATCCTTGGTATTTAGATTA 58.202 34.615 0.00 0.00 31.60 1.75
4981 5335 6.659824 ACCGAACATCCTTGGTATTTAGATT 58.340 36.000 0.00 0.00 31.60 2.40
4982 5336 6.248569 ACCGAACATCCTTGGTATTTAGAT 57.751 37.500 0.00 0.00 31.60 1.98
5224 5585 4.265073 GAGATACTGTCATGGCTTGGTTT 58.735 43.478 0.00 0.00 0.00 3.27
5226 5587 2.171448 GGAGATACTGTCATGGCTTGGT 59.829 50.000 0.00 0.00 0.00 3.67
5228 5589 2.171237 TGGGAGATACTGTCATGGCTTG 59.829 50.000 0.00 0.00 0.00 4.01
5295 5656 0.034670 AGCTCCAAATCTGAGGCCAC 60.035 55.000 5.01 0.00 0.00 5.01
5327 5688 8.623903 TCATGGCTTTTCATGATTAATAGTGAC 58.376 33.333 0.00 0.00 45.81 3.67
5354 5715 4.503817 GGCTTGAGGGATGCTTTTCTTTTT 60.504 41.667 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.