Multiple sequence alignment - TraesCS7A01G402100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G402100 chr7A 100.000 5426 0 0 1 5426 581373258 581367833 0.000000e+00 10021.0
1 TraesCS7A01G402100 chr7D 92.304 2196 88 25 1 2158 510612437 510610285 0.000000e+00 3044.0
2 TraesCS7A01G402100 chr7D 93.012 1245 50 13 2155 3378 510609980 510608752 0.000000e+00 1783.0
3 TraesCS7A01G402100 chr7D 93.098 681 40 6 4733 5409 510586472 510585795 0.000000e+00 990.0
4 TraesCS7A01G402100 chr7D 87.544 562 32 11 3766 4322 510608132 510607604 2.780000e-172 616.0
5 TraesCS7A01G402100 chr7D 89.664 387 30 4 3350 3734 510608752 510608374 8.170000e-133 484.0
6 TraesCS7A01G402100 chr7D 88.442 398 14 14 4349 4736 510607085 510606710 8.290000e-123 451.0
7 TraesCS7A01G402100 chr7D 91.304 92 6 2 4777 4868 494609452 494609363 2.050000e-24 124.0
8 TraesCS7A01G402100 chr7D 77.108 166 25 9 5080 5235 78889403 78889241 3.480000e-12 84.2
9 TraesCS7A01G402100 chr7D 96.000 50 2 0 2873 2922 13241158 13241109 1.250000e-11 82.4
10 TraesCS7A01G402100 chr7D 100.000 28 0 0 5048 5075 181337155 181337128 1.000000e-02 52.8
11 TraesCS7A01G402100 chr7B 92.000 1150 56 16 1 1140 539217290 539216167 0.000000e+00 1581.0
12 TraesCS7A01G402100 chr7B 85.682 887 61 30 1142 1997 539216128 539215277 0.000000e+00 874.0
13 TraesCS7A01G402100 chr7B 83.363 559 63 16 2339 2877 539212473 539211925 1.760000e-134 490.0
14 TraesCS7A01G402100 chr7B 81.886 403 41 16 3350 3746 539196721 539196345 1.470000e-80 311.0
15 TraesCS7A01G402100 chr1A 90.411 292 19 5 999 1290 439487851 439488133 5.130000e-100 375.0
16 TraesCS7A01G402100 chr1A 88.742 302 25 5 999 1300 31697498 31697790 1.440000e-95 361.0
17 TraesCS7A01G402100 chr1A 87.719 285 26 6 1002 1286 534010618 534010893 1.890000e-84 324.0
18 TraesCS7A01G402100 chr1A 96.000 50 2 0 2873 2922 28831878 28831927 1.250000e-11 82.4
19 TraesCS7A01G402100 chr1A 100.000 28 0 0 1381 1408 31697865 31697892 1.000000e-02 52.8
20 TraesCS7A01G402100 chr1A 100.000 28 0 0 1381 1408 534010982 534011009 1.000000e-02 52.8
21 TraesCS7A01G402100 chr3B 89.298 299 23 6 1002 1300 685090310 685090021 3.090000e-97 366.0
22 TraesCS7A01G402100 chr3B 88.079 302 27 6 999 1300 615704215 615703923 3.110000e-92 350.0
23 TraesCS7A01G402100 chr3B 87.417 302 28 7 999 1300 509216836 509217127 6.730000e-89 339.0
24 TraesCS7A01G402100 chr3B 86.644 292 36 2 5124 5412 21188556 21188265 2.440000e-83 320.0
25 TraesCS7A01G402100 chr3B 90.625 96 7 2 4770 4864 770342971 770343065 5.710000e-25 126.0
26 TraesCS7A01G402100 chr3B 100.000 28 0 0 1381 1408 615703848 615703821 1.000000e-02 52.8
27 TraesCS7A01G402100 chr1D 89.333 300 19 7 999 1295 418606268 418606557 1.110000e-96 364.0
28 TraesCS7A01G402100 chr6D 88.235 289 31 2 5124 5409 287031258 287031546 5.200000e-90 342.0
29 TraesCS7A01G402100 chr6D 86.897 290 34 3 5123 5409 431473354 431473642 6.780000e-84 322.0
30 TraesCS7A01G402100 chr6D 96.000 50 2 0 2873 2922 54706680 54706631 1.250000e-11 82.4
31 TraesCS7A01G402100 chr6D 96.078 51 0 2 2873 2922 460808282 460808331 1.250000e-11 82.4
32 TraesCS7A01G402100 chr6D 96.774 31 1 0 5045 5075 2954005 2954035 1.000000e-02 52.8
33 TraesCS7A01G402100 chr2B 88.581 289 24 5 1002 1290 632574007 632573728 5.200000e-90 342.0
34 TraesCS7A01G402100 chr6B 88.014 292 26 6 999 1290 304065384 304065666 2.420000e-88 337.0
35 TraesCS7A01G402100 chr6B 77.286 339 40 20 5082 5409 96407548 96407860 1.210000e-36 165.0
36 TraesCS7A01G402100 chr4A 87.285 291 32 4 5123 5409 648472702 648472991 1.460000e-85 327.0
37 TraesCS7A01G402100 chr4A 87.153 288 34 2 5125 5409 595823523 595823236 1.890000e-84 324.0
38 TraesCS7A01G402100 chr3D 87.456 287 33 2 5126 5409 436390852 436391138 1.460000e-85 327.0
39 TraesCS7A01G402100 chr3D 96.000 50 2 0 2873 2922 131717818 131717769 1.250000e-11 82.4
40 TraesCS7A01G402100 chr3D 96.000 50 2 0 2873 2922 553626391 553626342 1.250000e-11 82.4
41 TraesCS7A01G402100 chr2D 87.241 290 32 4 5124 5409 372702543 372702831 5.240000e-85 326.0
42 TraesCS7A01G402100 chr2D 82.831 332 47 7 5080 5404 78708929 78708601 6.880000e-74 289.0
43 TraesCS7A01G402100 chr2D 93.258 89 5 1 1366 1454 645284998 645284911 4.410000e-26 130.0
44 TraesCS7A01G402100 chr5D 86.897 290 35 2 5123 5409 447552582 447552871 6.780000e-84 322.0
45 TraesCS7A01G402100 chr6A 93.182 88 6 0 4777 4864 219477864 219477777 4.410000e-26 130.0
46 TraesCS7A01G402100 chr4D 93.103 87 6 0 4777 4863 301528725 301528639 1.590000e-25 128.0
47 TraesCS7A01G402100 chr4B 91.304 92 7 1 4773 4864 644289477 644289387 2.050000e-24 124.0
48 TraesCS7A01G402100 chr1B 88.000 100 12 0 4771 4870 623737708 623737807 9.550000e-23 119.0
49 TraesCS7A01G402100 chr1B 86.239 109 13 2 4777 4884 503352988 503352881 3.430000e-22 117.0
50 TraesCS7A01G402100 chr5B 86.111 108 14 1 4756 4862 575975123 575975230 1.240000e-21 115.0
51 TraesCS7A01G402100 chr2A 94.340 53 3 0 2875 2927 62608784 62608836 1.250000e-11 82.4
52 TraesCS7A01G402100 chr2A 90.164 61 4 2 2877 2937 187480890 187480832 1.620000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G402100 chr7A 581367833 581373258 5425 True 10021.000000 10021 100.0000 1 5426 1 chr7A.!!$R1 5425
1 TraesCS7A01G402100 chr7D 510606710 510612437 5727 True 1275.600000 3044 90.1932 1 4736 5 chr7D.!!$R6 4735
2 TraesCS7A01G402100 chr7D 510585795 510586472 677 True 990.000000 990 93.0980 4733 5409 1 chr7D.!!$R5 676
3 TraesCS7A01G402100 chr7B 539211925 539217290 5365 True 981.666667 1581 87.0150 1 2877 3 chr7B.!!$R2 2876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.248866 GGGCCACGAACACAAAACTG 60.249 55.000 4.39 0.0 0.00 3.16 F
340 342 2.304761 ACACAGGTACGATTTCCACCAT 59.695 45.455 0.00 0.0 34.62 3.55 F
1097 1124 0.620121 CCCTTCCCTTCCTCTGCTCT 60.620 60.000 0.00 0.0 0.00 4.09 F
2143 4069 0.037232 GAACTCCCTCCAGGTTGACG 60.037 60.000 0.00 0.0 36.75 4.35 F
3577 6530 0.108138 GGTGTGCCTCTTGCGTCTAT 60.108 55.000 0.00 0.0 45.60 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1109 0.616111 GTCCAGAGCAGAGGAAGGGA 60.616 60.0 0.0 0.00 35.29 4.20 R
1724 1822 0.673985 TCGGCTGGATCAGATAACCG 59.326 55.0 0.0 6.56 35.70 4.44 R
3040 5959 0.458025 GTGTGCCGGTGCTCTACTAC 60.458 60.0 1.9 0.00 38.71 2.73 R
3558 6511 0.108138 ATAGACGCAAGAGGCACACC 60.108 55.0 0.0 0.00 45.17 4.16 R
4565 8238 0.171231 CGAGATCGGCTGACAGTCAA 59.829 55.0 8.0 0.00 35.37 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 7.081526 AGCAGAAAGTAATGATGTGCTTTAG 57.918 36.000 0.00 0.00 40.33 1.85
88 89 6.656693 AGCAGAAAGTAATGATGTGCTTTAGT 59.343 34.615 0.00 0.00 40.33 2.24
103 104 5.823045 GTGCTTTAGTAGGATGCCAGTTTAT 59.177 40.000 0.00 0.00 0.00 1.40
110 111 1.683385 GGATGCCAGTTTATTCAGGGC 59.317 52.381 0.00 0.00 44.82 5.19
126 127 0.248866 GGGCCACGAACACAAAACTG 60.249 55.000 4.39 0.00 0.00 3.16
170 171 6.980397 CAGGTAAAATTGGAAATCCTACATGC 59.020 38.462 0.44 0.00 36.82 4.06
203 204 6.206243 CAGAATAACAATCCAATAGCCCTCTG 59.794 42.308 0.00 0.00 0.00 3.35
284 286 6.488683 CCATAAACTACCAAAGTGAACTCCAA 59.511 38.462 0.00 0.00 38.88 3.53
340 342 2.304761 ACACAGGTACGATTTCCACCAT 59.695 45.455 0.00 0.00 34.62 3.55
687 690 2.831526 ACAAGGAGGAGAAAGAGAGAGC 59.168 50.000 0.00 0.00 0.00 4.09
688 691 2.830923 CAAGGAGGAGAAAGAGAGAGCA 59.169 50.000 0.00 0.00 0.00 4.26
689 692 2.456577 AGGAGGAGAAAGAGAGAGCAC 58.543 52.381 0.00 0.00 0.00 4.40
857 863 3.897122 TGGCCGGCCACTCCTTTT 61.897 61.111 44.23 0.00 41.89 2.27
858 864 2.600470 GGCCGGCCACTCCTTTTT 60.600 61.111 40.73 0.00 35.81 1.94
919 931 2.595463 GCTGCTTGCTGTCCACCA 60.595 61.111 0.00 0.00 38.95 4.17
931 943 4.974721 CCACCAAAGCGGCCCACT 62.975 66.667 0.00 0.00 39.03 4.00
957 976 2.928988 ATCGCGGATCCTGGTCCAGA 62.929 60.000 21.23 6.96 38.21 3.86
990 1012 2.556287 GGAAGCAGCCGTCGTTTG 59.444 61.111 0.00 0.00 0.00 2.93
1071 1098 4.541648 CGTCCTCCCGATCCCCCT 62.542 72.222 0.00 0.00 0.00 4.79
1072 1099 2.524640 GTCCTCCCGATCCCCCTC 60.525 72.222 0.00 0.00 0.00 4.30
1073 1100 3.846254 TCCTCCCGATCCCCCTCC 61.846 72.222 0.00 0.00 0.00 4.30
1097 1124 0.620121 CCCTTCCCTTCCTCTGCTCT 60.620 60.000 0.00 0.00 0.00 4.09
1143 1170 2.064581 GCCCCATCCACCTCTACGT 61.065 63.158 0.00 0.00 0.00 3.57
1291 1354 2.125106 CCTCCTACAAGGCACGCC 60.125 66.667 0.00 0.00 34.61 5.68
1293 1356 2.992689 TCCTACAAGGCACGCCGA 60.993 61.111 1.61 0.00 41.95 5.54
1294 1357 2.813908 CCTACAAGGCACGCCGAC 60.814 66.667 1.61 0.00 41.95 4.79
1424 1507 3.450115 GGAGGTACGAGGCGCACT 61.450 66.667 10.83 3.39 0.00 4.40
1522 1612 3.131933 ACTCGTGATTTCCTCTCATCCTG 59.868 47.826 0.00 0.00 0.00 3.86
1526 1616 4.583871 GTGATTTCCTCTCATCCTGTTGT 58.416 43.478 0.00 0.00 0.00 3.32
1560 1650 1.405821 CCCGAGCTGTTAGGTGAGTAG 59.594 57.143 0.00 0.00 0.00 2.57
1561 1651 2.093106 CCGAGCTGTTAGGTGAGTAGT 58.907 52.381 0.00 0.00 0.00 2.73
1562 1652 3.276857 CCGAGCTGTTAGGTGAGTAGTA 58.723 50.000 0.00 0.00 0.00 1.82
1572 1662 9.224267 CTGTTAGGTGAGTAGTACTACTTGTAA 57.776 37.037 31.14 22.19 45.63 2.41
1685 1779 2.616524 TGCCTGTTAGTACCTTGGTCT 58.383 47.619 0.00 0.00 0.00 3.85
1686 1780 3.781808 TGCCTGTTAGTACCTTGGTCTA 58.218 45.455 0.00 0.00 0.00 2.59
1687 1781 3.512724 TGCCTGTTAGTACCTTGGTCTAC 59.487 47.826 0.00 0.00 0.00 2.59
1688 1782 3.512724 GCCTGTTAGTACCTTGGTCTACA 59.487 47.826 0.00 0.00 0.00 2.74
1724 1822 1.176527 TAGCACTCCAATTTGCCTGC 58.823 50.000 0.00 0.00 39.75 4.85
1760 1858 4.987912 CAGCCGAAAACCAAATGTAAATGT 59.012 37.500 0.00 0.00 0.00 2.71
1891 1990 2.033049 TCGCTGAGGCTCGTTATAAGTC 59.967 50.000 10.42 0.00 36.09 3.01
1998 2097 0.177604 GTGCTGATAGCTCTGGCAGT 59.822 55.000 15.27 0.00 42.97 4.40
1999 2098 0.177373 TGCTGATAGCTCTGGCAGTG 59.823 55.000 15.27 13.56 42.97 3.66
2000 2099 0.532417 GCTGATAGCTCTGGCAGTGG 60.532 60.000 15.27 9.88 41.70 4.00
2001 2100 0.532417 CTGATAGCTCTGGCAGTGGC 60.532 60.000 20.93 20.93 41.70 5.01
2002 2101 1.266867 TGATAGCTCTGGCAGTGGCA 61.267 55.000 26.57 19.44 43.71 4.92
2003 2102 0.813210 GATAGCTCTGGCAGTGGCAC 60.813 60.000 26.57 10.29 43.71 5.01
2112 4038 5.779922 AGAGTTCGAGCTTGTGTATAAACA 58.220 37.500 2.39 0.00 0.00 2.83
2143 4069 0.037232 GAACTCCCTCCAGGTTGACG 60.037 60.000 0.00 0.00 36.75 4.35
2144 4070 0.471211 AACTCCCTCCAGGTTGACGA 60.471 55.000 0.00 0.00 36.75 4.20
2145 4071 1.186267 ACTCCCTCCAGGTTGACGAC 61.186 60.000 0.00 0.00 36.75 4.34
2373 5270 5.106357 TGTCACGACATCCAATTTGGTTATG 60.106 40.000 14.98 13.89 36.14 1.90
2587 5487 8.642885 GCAATGTAACATAGAGAGACATAATCG 58.357 37.037 0.00 0.00 30.69 3.34
2648 5548 4.940463 TGTACGTGTCTAGCTTTTCAGTT 58.060 39.130 0.00 0.00 0.00 3.16
2749 5662 1.342174 CCTGCACTTTCAGTTGCCAAT 59.658 47.619 0.00 0.00 32.32 3.16
2750 5663 2.557924 CCTGCACTTTCAGTTGCCAATA 59.442 45.455 0.00 0.00 32.32 1.90
2885 5804 6.273825 AGTATCAGATAATTGACCACGTGAC 58.726 40.000 19.30 11.34 0.00 3.67
2912 5831 7.613801 ACATGTGGTAAGCAATCCAAACTATTA 59.386 33.333 0.00 0.00 35.38 0.98
3015 5934 9.516314 GTAAAATCCAAAGGCATATAACAGAAC 57.484 33.333 0.00 0.00 0.00 3.01
3030 5949 4.506886 ACAGAACTACAGAAGAACTCCG 57.493 45.455 0.00 0.00 0.00 4.63
3031 5950 4.142790 ACAGAACTACAGAAGAACTCCGA 58.857 43.478 0.00 0.00 0.00 4.55
3053 5972 1.226603 GCCACGTAGTAGAGCACCG 60.227 63.158 0.00 0.00 41.61 4.94
3073 5992 5.007682 ACCGGCACACTTCTAACATTAAAT 58.992 37.500 0.00 0.00 0.00 1.40
3092 6011 1.071987 TGCTCACAGAAGCACCCTG 59.928 57.895 0.00 0.00 47.00 4.45
3099 6018 2.300152 CACAGAAGCACCCTGAAGACTA 59.700 50.000 6.96 0.00 35.69 2.59
3111 6030 6.656693 CACCCTGAAGACTACAATTTTCTCAT 59.343 38.462 0.00 0.00 0.00 2.90
3113 6032 7.175641 ACCCTGAAGACTACAATTTTCTCATTG 59.824 37.037 0.00 0.00 39.67 2.82
3172 6092 6.419484 AAAACCAAGAGGAATACCAAAAGG 57.581 37.500 0.00 0.00 38.69 3.11
3173 6093 4.741928 ACCAAGAGGAATACCAAAAGGT 57.258 40.909 0.00 0.00 38.69 3.50
3174 6094 5.074746 ACCAAGAGGAATACCAAAAGGTT 57.925 39.130 0.00 0.00 38.69 3.50
3175 6095 5.464069 ACCAAGAGGAATACCAAAAGGTTT 58.536 37.500 0.00 0.00 38.69 3.27
3176 6096 5.304357 ACCAAGAGGAATACCAAAAGGTTTG 59.696 40.000 0.00 0.00 38.69 2.93
3177 6097 5.304357 CCAAGAGGAATACCAAAAGGTTTGT 59.696 40.000 0.00 0.00 38.94 2.83
3178 6098 6.492087 CCAAGAGGAATACCAAAAGGTTTGTA 59.508 38.462 0.00 0.00 38.94 2.41
3179 6099 7.368059 CAAGAGGAATACCAAAAGGTTTGTAC 58.632 38.462 0.00 0.00 38.94 2.90
3180 6100 6.607019 AGAGGAATACCAAAAGGTTTGTACA 58.393 36.000 0.00 0.00 38.94 2.90
3181 6101 7.238710 AGAGGAATACCAAAAGGTTTGTACAT 58.761 34.615 0.00 0.00 38.94 2.29
3182 6102 7.176690 AGAGGAATACCAAAAGGTTTGTACATG 59.823 37.037 0.00 0.00 38.94 3.21
3183 6103 7.007723 AGGAATACCAAAAGGTTTGTACATGA 58.992 34.615 0.00 0.00 38.94 3.07
3184 6104 7.039993 AGGAATACCAAAAGGTTTGTACATGAC 60.040 37.037 0.00 0.00 38.94 3.06
3185 6105 7.039993 GGAATACCAAAAGGTTTGTACATGACT 60.040 37.037 0.00 0.00 35.97 3.41
3186 6106 7.833285 ATACCAAAAGGTTTGTACATGACTT 57.167 32.000 0.00 0.00 0.00 3.01
3224 6144 2.028420 TTCTTGCCATGACTCATCCG 57.972 50.000 0.00 0.00 0.00 4.18
3231 6151 1.303309 CATGACTCATCCGAAAGCCC 58.697 55.000 0.00 0.00 0.00 5.19
3268 6188 5.499313 TCTCATTACATCCTGAACATGCAA 58.501 37.500 0.00 0.00 0.00 4.08
3348 6271 3.072038 TGTTGGATATCTGCCATCAGGAG 59.928 47.826 2.05 0.00 40.69 3.69
3355 6308 1.908619 TCTGCCATCAGGAGCTTTGTA 59.091 47.619 0.00 0.00 40.69 2.41
3362 6315 3.963428 TCAGGAGCTTTGTAGGAGTTC 57.037 47.619 0.00 0.00 0.00 3.01
3420 6373 4.159377 GAAGAATTCGCCATGTTGAACA 57.841 40.909 0.00 0.00 34.17 3.18
3468 6421 0.394216 TCGCATAGCCCAAGCACATT 60.394 50.000 0.00 0.00 43.56 2.71
3496 6449 7.411486 TTGGATTTGAACCAACTACTTTTCA 57.589 32.000 0.00 0.00 41.64 2.69
3508 6461 8.859090 ACCAACTACTTTTCATTCATTCATTCA 58.141 29.630 0.00 0.00 0.00 2.57
3509 6462 9.865321 CCAACTACTTTTCATTCATTCATTCAT 57.135 29.630 0.00 0.00 0.00 2.57
3552 6505 0.898320 TCTAGCGGCTCAAAGCTTCT 59.102 50.000 5.39 0.00 44.15 2.85
3553 6506 1.276421 TCTAGCGGCTCAAAGCTTCTT 59.724 47.619 5.39 0.00 44.15 2.52
3562 6515 3.845781 TCAAAGCTTCTTGAGAGGTGT 57.154 42.857 0.00 0.00 31.67 4.16
3577 6530 0.108138 GGTGTGCCTCTTGCGTCTAT 60.108 55.000 0.00 0.00 45.60 1.98
3601 6554 4.272504 GGTCGTTTTGTGAACATGAAGAGA 59.727 41.667 0.00 0.00 0.00 3.10
3603 6556 6.147164 GGTCGTTTTGTGAACATGAAGAGATA 59.853 38.462 0.00 0.00 0.00 1.98
3618 6571 8.975295 CATGAAGAGATAATTTTTCTTCCCCTT 58.025 33.333 16.87 6.63 43.82 3.95
3619 6572 8.956446 TGAAGAGATAATTTTTCTTCCCCTTT 57.044 30.769 16.87 0.00 43.82 3.11
3621 6574 9.862371 GAAGAGATAATTTTTCTTCCCCTTTTC 57.138 33.333 12.00 0.00 40.43 2.29
3627 6580 7.864108 AATTTTTCTTCCCCTTTTCTTTGTG 57.136 32.000 0.00 0.00 0.00 3.33
3630 6583 3.832527 TCTTCCCCTTTTCTTTGTGGAG 58.167 45.455 0.00 0.00 0.00 3.86
3633 6586 4.258457 TCCCCTTTTCTTTGTGGAGAAA 57.742 40.909 0.00 0.00 42.28 2.52
3652 6605 0.546122 AGAGTGTGCACCAGTTGGAA 59.454 50.000 15.69 0.00 38.94 3.53
3654 6607 0.255890 AGTGTGCACCAGTTGGAAGT 59.744 50.000 15.69 0.00 38.94 3.01
3663 6616 2.039084 ACCAGTTGGAAGTTGAGCCTAG 59.961 50.000 4.92 0.00 38.94 3.02
3703 6656 0.178068 TAAGATTCGGACCCTGCTGC 59.822 55.000 0.00 0.00 0.00 5.25
3711 6664 1.282875 GACCCTGCTGCGTGAAAAC 59.717 57.895 0.00 0.00 0.00 2.43
3712 6665 2.252260 CCCTGCTGCGTGAAAACG 59.748 61.111 0.00 0.00 0.00 3.60
3716 6669 0.179215 CTGCTGCGTGAAAACGGATC 60.179 55.000 0.00 0.00 32.11 3.36
3720 6673 1.320555 CTGCGTGAAAACGGATCGTAG 59.679 52.381 0.00 0.00 39.99 3.51
3734 6687 4.416620 GGATCGTAGCTGTATGAGTATGC 58.583 47.826 0.00 0.00 0.00 3.14
3735 6688 4.156922 GGATCGTAGCTGTATGAGTATGCT 59.843 45.833 0.00 0.00 37.72 3.79
3737 6690 5.109662 TCGTAGCTGTATGAGTATGCTTC 57.890 43.478 0.00 0.00 35.47 3.86
3739 6692 4.319549 CGTAGCTGTATGAGTATGCTTCGA 60.320 45.833 0.00 0.00 43.54 3.71
3740 6693 4.235939 AGCTGTATGAGTATGCTTCGAG 57.764 45.455 0.00 0.00 0.00 4.04
3741 6694 3.005261 AGCTGTATGAGTATGCTTCGAGG 59.995 47.826 0.00 0.00 0.00 4.63
3742 6695 3.858877 GCTGTATGAGTATGCTTCGAGGG 60.859 52.174 0.00 0.00 0.00 4.30
3744 6697 1.123077 ATGAGTATGCTTCGAGGGCA 58.877 50.000 15.49 15.49 44.05 5.36
3745 6698 0.901827 TGAGTATGCTTCGAGGGCAA 59.098 50.000 16.73 6.33 43.14 4.52
3746 6699 1.486310 TGAGTATGCTTCGAGGGCAAT 59.514 47.619 16.73 8.07 43.14 3.56
3747 6700 2.092968 TGAGTATGCTTCGAGGGCAATT 60.093 45.455 16.73 6.54 43.14 2.32
3748 6701 2.545946 GAGTATGCTTCGAGGGCAATTC 59.454 50.000 16.73 11.54 43.14 2.17
3749 6702 1.261619 GTATGCTTCGAGGGCAATTCG 59.738 52.381 16.73 0.00 43.14 3.34
3750 6703 1.097547 ATGCTTCGAGGGCAATTCGG 61.098 55.000 16.73 0.00 43.14 4.30
3751 6704 1.449601 GCTTCGAGGGCAATTCGGA 60.450 57.895 7.44 0.00 38.54 4.55
3752 6705 1.432270 GCTTCGAGGGCAATTCGGAG 61.432 60.000 8.65 8.65 44.61 4.63
3754 6707 1.136305 CTTCGAGGGCAATTCGGAGTA 59.864 52.381 5.68 0.00 38.56 2.59
3755 6708 1.410004 TCGAGGGCAATTCGGAGTAT 58.590 50.000 5.65 0.00 38.54 2.12
3756 6709 1.068588 TCGAGGGCAATTCGGAGTATG 59.931 52.381 5.65 0.00 38.54 2.39
3757 6710 1.202533 CGAGGGCAATTCGGAGTATGT 60.203 52.381 0.00 0.00 34.56 2.29
3759 6712 2.614057 GAGGGCAATTCGGAGTATGTTG 59.386 50.000 0.00 0.00 0.00 3.33
3760 6713 2.026262 AGGGCAATTCGGAGTATGTTGT 60.026 45.455 0.00 0.00 0.00 3.32
3762 6715 3.942748 GGGCAATTCGGAGTATGTTGTAA 59.057 43.478 0.00 0.00 0.00 2.41
3763 6716 4.201881 GGGCAATTCGGAGTATGTTGTAAC 60.202 45.833 0.00 0.00 0.00 2.50
3764 6717 4.201881 GGCAATTCGGAGTATGTTGTAACC 60.202 45.833 0.00 0.00 0.00 2.85
3784 6947 2.030805 CCTTCCAAAAGCGTTTCCTCTG 60.031 50.000 0.00 0.00 0.00 3.35
3804 6967 1.959226 GTGCTCGTTTTCTCCCGCA 60.959 57.895 0.00 0.00 0.00 5.69
3841 7004 0.032952 TATAAGATCCACGCGGCACC 59.967 55.000 12.47 0.00 0.00 5.01
3924 7087 2.752358 CTGCCAAGAGTGCCTCCA 59.248 61.111 0.00 0.00 0.00 3.86
3941 7104 3.565979 CATCCCCTGGAGATGGAGA 57.434 57.895 10.15 0.00 37.96 3.71
3983 7146 1.081892 CCACCGAAACATCTGCTCAG 58.918 55.000 0.00 0.00 0.00 3.35
3984 7147 1.338105 CCACCGAAACATCTGCTCAGA 60.338 52.381 1.67 1.67 42.37 3.27
3986 7149 1.620819 ACCGAAACATCTGCTCAGAGT 59.379 47.619 5.76 1.86 41.33 3.24
3987 7150 1.998315 CCGAAACATCTGCTCAGAGTG 59.002 52.381 5.76 6.72 41.33 3.51
3988 7151 1.392853 CGAAACATCTGCTCAGAGTGC 59.607 52.381 5.76 0.00 41.33 4.40
3989 7152 2.697654 GAAACATCTGCTCAGAGTGCT 58.302 47.619 5.76 0.00 41.33 4.40
3990 7153 2.383368 AACATCTGCTCAGAGTGCTC 57.617 50.000 5.76 0.00 41.33 4.26
3991 7154 1.264295 ACATCTGCTCAGAGTGCTCA 58.736 50.000 5.76 0.00 41.33 4.26
3993 7156 1.205179 CATCTGCTCAGAGTGCTCACT 59.795 52.381 1.62 1.62 45.84 3.41
3994 7157 0.602060 TCTGCTCAGAGTGCTCACTG 59.398 55.000 7.33 6.85 42.66 3.66
3995 7158 0.602060 CTGCTCAGAGTGCTCACTGA 59.398 55.000 13.94 13.94 42.66 3.41
3996 7159 0.316522 TGCTCAGAGTGCTCACTGAC 59.683 55.000 11.19 9.32 42.66 3.51
3997 7160 0.732196 GCTCAGAGTGCTCACTGACG 60.732 60.000 11.19 9.13 42.66 4.35
3998 7161 0.109365 CTCAGAGTGCTCACTGACGG 60.109 60.000 11.19 0.95 42.66 4.79
3999 7162 0.537371 TCAGAGTGCTCACTGACGGA 60.537 55.000 11.19 0.00 42.66 4.69
4000 7163 0.387878 CAGAGTGCTCACTGACGGAC 60.388 60.000 7.33 0.00 42.66 4.79
4001 7164 1.080434 GAGTGCTCACTGACGGACC 60.080 63.158 7.33 0.00 42.66 4.46
4005 7168 2.126307 CTCACTGACGGACCGCTG 60.126 66.667 15.39 12.99 0.00 5.18
4030 7193 1.026718 GCAAGCTTACATGCCCGTCT 61.027 55.000 0.00 0.00 34.44 4.18
4101 7267 4.344474 GGATAGCGCCGTCCTCCG 62.344 72.222 18.58 0.00 0.00 4.63
4139 7305 4.760047 CCAGGGAGGGACGCGTTG 62.760 72.222 15.53 5.38 36.53 4.10
4140 7306 4.760047 CAGGGAGGGACGCGTTGG 62.760 72.222 15.53 0.00 36.53 3.77
4144 7310 3.423154 GAGGGACGCGTTGGCAAG 61.423 66.667 15.53 0.00 39.92 4.01
4145 7311 4.250305 AGGGACGCGTTGGCAAGT 62.250 61.111 15.53 0.00 39.92 3.16
4146 7312 2.357760 GGGACGCGTTGGCAAGTA 60.358 61.111 15.53 0.00 39.92 2.24
4147 7313 2.674084 GGGACGCGTTGGCAAGTAC 61.674 63.158 15.53 0.00 39.92 2.73
4148 7314 1.666872 GGACGCGTTGGCAAGTACT 60.667 57.895 15.53 0.00 39.92 2.73
4149 7315 1.491563 GACGCGTTGGCAAGTACTG 59.508 57.895 15.53 0.00 39.92 2.74
4150 7316 1.897398 GACGCGTTGGCAAGTACTGG 61.897 60.000 15.53 0.00 39.92 4.00
4151 7317 1.959226 CGCGTTGGCAAGTACTGGT 60.959 57.895 0.00 0.00 39.92 4.00
4152 7318 0.668096 CGCGTTGGCAAGTACTGGTA 60.668 55.000 0.00 0.00 39.92 3.25
4153 7319 0.794473 GCGTTGGCAAGTACTGGTAC 59.206 55.000 0.00 2.97 39.62 3.34
4154 7320 1.435577 CGTTGGCAAGTACTGGTACC 58.564 55.000 4.43 4.43 36.75 3.34
4155 7321 1.270412 CGTTGGCAAGTACTGGTACCA 60.270 52.381 15.39 15.39 36.75 3.25
4156 7322 2.148768 GTTGGCAAGTACTGGTACCAC 58.851 52.381 11.60 0.94 36.75 4.16
4157 7323 1.425694 TGGCAAGTACTGGTACCACA 58.574 50.000 11.60 1.50 36.75 4.17
4158 7324 1.769465 TGGCAAGTACTGGTACCACAA 59.231 47.619 11.60 0.00 36.75 3.33
4159 7325 2.172930 TGGCAAGTACTGGTACCACAAA 59.827 45.455 11.60 0.00 36.75 2.83
4167 7333 0.598158 TGGTACCACAAAGCGTCGAC 60.598 55.000 11.60 5.18 0.00 4.20
4225 7391 0.617413 AGTTGTGCCTCCCAGATGAG 59.383 55.000 0.00 0.00 0.00 2.90
4236 7402 2.042842 TCCCAGATGAGGCCATGAAAAA 59.957 45.455 5.01 0.00 32.09 1.94
4297 7464 7.399191 TGAGATCCAAATGTACTACTTGGTACT 59.601 37.037 16.03 15.36 41.64 2.73
4436 8109 2.283351 CGGAAACCGGCGAGTTTTATAG 59.717 50.000 21.41 12.61 44.15 1.31
4448 8121 6.238130 GGCGAGTTTTATAGGTTCATCTGTTC 60.238 42.308 0.00 0.00 0.00 3.18
4451 8124 6.407202 AGTTTTATAGGTTCATCTGTTCGCT 58.593 36.000 0.00 0.00 0.00 4.93
4452 8125 7.553334 AGTTTTATAGGTTCATCTGTTCGCTA 58.447 34.615 0.00 0.00 0.00 4.26
4453 8126 7.707035 AGTTTTATAGGTTCATCTGTTCGCTAG 59.293 37.037 0.00 0.00 0.00 3.42
4517 8190 1.227176 GTGAATACCGCGTCCTCCC 60.227 63.158 4.92 0.00 0.00 4.30
4557 8230 2.744787 CTCGGCCGAGATGAAAAATG 57.255 50.000 45.28 18.96 44.53 2.32
4558 8231 2.009774 CTCGGCCGAGATGAAAAATGT 58.990 47.619 45.28 0.00 44.53 2.71
4559 8232 2.006888 TCGGCCGAGATGAAAAATGTC 58.993 47.619 27.28 0.00 0.00 3.06
4560 8233 2.009774 CGGCCGAGATGAAAAATGTCT 58.990 47.619 24.07 0.00 0.00 3.41
4561 8234 2.223112 CGGCCGAGATGAAAAATGTCTG 60.223 50.000 24.07 0.00 0.00 3.51
4562 8235 2.098117 GGCCGAGATGAAAAATGTCTGG 59.902 50.000 0.00 0.00 0.00 3.86
4563 8236 3.009723 GCCGAGATGAAAAATGTCTGGA 58.990 45.455 0.00 0.00 0.00 3.86
4564 8237 3.629398 GCCGAGATGAAAAATGTCTGGAT 59.371 43.478 0.00 0.00 0.00 3.41
4565 8238 4.096984 GCCGAGATGAAAAATGTCTGGATT 59.903 41.667 0.00 0.00 0.00 3.01
4566 8239 5.393461 GCCGAGATGAAAAATGTCTGGATTT 60.393 40.000 0.00 0.00 0.00 2.17
4567 8240 6.032094 CCGAGATGAAAAATGTCTGGATTTG 58.968 40.000 0.00 0.00 0.00 2.32
4568 8241 6.127925 CCGAGATGAAAAATGTCTGGATTTGA 60.128 38.462 0.00 0.00 0.00 2.69
4572 8245 6.713762 TGAAAAATGTCTGGATTTGACTGT 57.286 33.333 0.00 0.00 35.63 3.55
4604 8277 1.441732 GCCGTGAAACCGTGGAAGTT 61.442 55.000 0.00 0.00 0.00 2.66
4605 8278 0.306533 CCGTGAAACCGTGGAAGTTG 59.693 55.000 0.00 0.00 0.00 3.16
4606 8279 1.011333 CGTGAAACCGTGGAAGTTGT 58.989 50.000 0.00 0.00 0.00 3.32
4607 8280 2.203401 CGTGAAACCGTGGAAGTTGTA 58.797 47.619 0.00 0.00 0.00 2.41
4608 8281 2.033492 CGTGAAACCGTGGAAGTTGTAC 60.033 50.000 0.00 0.00 0.00 2.90
4609 8282 3.200483 GTGAAACCGTGGAAGTTGTACT 58.800 45.455 0.00 0.00 0.00 2.73
4610 8283 3.246936 GTGAAACCGTGGAAGTTGTACTC 59.753 47.826 0.00 0.00 0.00 2.59
4611 8284 3.133362 TGAAACCGTGGAAGTTGTACTCT 59.867 43.478 0.00 0.00 0.00 3.24
4758 8431 9.533253 GATTGTTTCTCTGATTCCTTTGAAAAA 57.467 29.630 0.00 0.00 33.32 1.94
4900 8573 2.629617 TGTGATGACAGCAGAGACTTCA 59.370 45.455 0.00 0.00 0.00 3.02
4905 8578 4.142609 TGACAGCAGAGACTTCAAAACT 57.857 40.909 0.00 0.00 0.00 2.66
4995 8668 8.578151 ACAGATTACGAAGGGATCTATCTTTAC 58.422 37.037 0.00 0.00 32.87 2.01
5003 8676 7.095439 CGAAGGGATCTATCTTTACTTGCAATC 60.095 40.741 0.00 0.00 0.00 2.67
5004 8677 6.226787 AGGGATCTATCTTTACTTGCAATCG 58.773 40.000 0.00 0.00 0.00 3.34
5027 8700 7.117397 TCGGACTACTATATAATCCCCTTCTG 58.883 42.308 0.00 0.00 0.00 3.02
5038 8711 1.604308 CCCTTCTGGCATGCACACA 60.604 57.895 21.36 7.52 0.00 3.72
5103 8777 0.807667 GCATCTACAGCCACGGACAG 60.808 60.000 0.00 0.00 0.00 3.51
5110 8784 1.675641 AGCCACGGACAGCAATTCC 60.676 57.895 0.00 0.00 0.00 3.01
5132 8806 0.032813 CCCCTCAAATGGGCACTGAT 60.033 55.000 0.00 0.00 45.78 2.90
5136 8810 0.394216 TCAAATGGGCACTGATCGGG 60.394 55.000 6.47 0.00 0.00 5.14
5157 8831 5.869649 GGCACCCCTCAAATAATGTAATT 57.130 39.130 0.00 0.00 41.28 1.40
5187 8861 5.234329 TCGAACGCCTCAATTTTCATATCTC 59.766 40.000 0.00 0.00 0.00 2.75
5217 8891 3.462982 ACAAACTCATGCAACTACGTCA 58.537 40.909 0.00 0.00 0.00 4.35
5261 8938 7.609056 ACTCCGTCATTACTAACTAAACATGT 58.391 34.615 0.00 0.00 0.00 3.21
5283 8960 6.469410 TGTCATCGGACTACCAAAATTTAGT 58.531 36.000 0.00 0.00 44.61 2.24
5311 8988 3.181451 TGGCTATGGTGAAGATCATCCAC 60.181 47.826 0.00 0.00 32.98 4.02
5329 9006 2.759795 GACTGCCCTTGCCCTTCT 59.240 61.111 0.00 0.00 36.33 2.85
5341 9018 4.394712 CCTTCTCGGCGCCCTTGT 62.395 66.667 23.46 0.00 0.00 3.16
5389 9066 3.288290 CGCGGTAGGGATCTCGCT 61.288 66.667 0.00 2.18 45.11 4.93
5405 9082 2.279120 CTGGATCTGCTCGTCGCC 60.279 66.667 0.00 0.00 38.05 5.54
5409 9086 3.200887 GATCTGCTCGTCGCCGGAT 62.201 63.158 5.05 6.72 38.05 4.18
5410 9087 3.490793 ATCTGCTCGTCGCCGGATG 62.491 63.158 5.05 0.00 38.05 3.51
5418 9095 2.443952 TCGCCGGATGGGACTCAT 60.444 61.111 5.05 0.00 38.47 2.90
5419 9096 1.152631 TCGCCGGATGGGACTCATA 60.153 57.895 5.05 0.00 38.47 2.15
5420 9097 1.006102 CGCCGGATGGGACTCATAC 60.006 63.158 5.05 0.00 38.47 2.39
5421 9098 1.464376 CGCCGGATGGGACTCATACT 61.464 60.000 5.05 0.00 38.47 2.12
5422 9099 0.318762 GCCGGATGGGACTCATACTC 59.681 60.000 5.05 0.00 38.47 2.59
5423 9100 2.002505 CCGGATGGGACTCATACTCT 57.997 55.000 0.00 0.00 38.47 3.24
5424 9101 1.615883 CCGGATGGGACTCATACTCTG 59.384 57.143 0.00 0.00 38.47 3.35
5425 9102 1.000283 CGGATGGGACTCATACTCTGC 60.000 57.143 0.00 0.00 34.50 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.963532 TCCTAGGGTGATTAAAGCATAGTTAG 58.036 38.462 9.46 0.00 31.73 2.34
87 88 4.137543 CCCTGAATAAACTGGCATCCTAC 58.862 47.826 0.00 0.00 0.00 3.18
88 89 3.435026 GCCCTGAATAAACTGGCATCCTA 60.435 47.826 0.00 0.00 0.00 2.94
103 104 0.394488 TTTGTGTTCGTGGCCCTGAA 60.394 50.000 0.00 0.47 0.00 3.02
110 111 3.303990 CCTGATCAGTTTTGTGTTCGTGG 60.304 47.826 21.11 0.00 0.00 4.94
126 127 4.040952 ACCTGTATACCTGATTGCCTGATC 59.959 45.833 0.00 0.00 0.00 2.92
142 143 9.936329 ATGTAGGATTTCCAATTTTACCTGTAT 57.064 29.630 0.00 0.00 38.89 2.29
170 171 5.840243 TGGATTGTTATTCTGAATGCCAG 57.160 39.130 13.01 0.00 44.27 4.85
203 204 6.698008 TGTTTGGATTGGTGTATGATCATC 57.302 37.500 12.53 4.90 0.00 2.92
260 261 7.444183 TCTTGGAGTTCACTTTGGTAGTTTATG 59.556 37.037 0.00 0.00 33.85 1.90
284 286 2.679716 GGATTGGGCAGGCACTCT 59.320 61.111 0.00 0.00 34.60 3.24
377 379 2.563086 GAATCAGTTGCGCGGTTCCG 62.563 60.000 8.83 6.90 0.00 4.30
660 663 2.296471 TCTTTCTCCTCCTTGTGACGAC 59.704 50.000 0.00 0.00 0.00 4.34
670 673 1.134175 CGTGCTCTCTCTTTCTCCTCC 59.866 57.143 0.00 0.00 0.00 4.30
688 691 2.355009 GGTTACACGTGGACGCGT 60.355 61.111 21.57 13.85 46.88 6.01
689 692 3.463690 CGGTTACACGTGGACGCG 61.464 66.667 21.57 17.36 44.43 6.01
919 931 1.153429 GATCGTAGTGGGCCGCTTT 60.153 57.895 26.87 8.07 0.00 3.51
931 943 0.521735 CAGGATCCGCGATGATCGTA 59.478 55.000 16.83 3.03 42.81 3.43
957 976 2.035626 CCGGCCCATGGACTTGTT 59.964 61.111 15.22 0.00 0.00 2.83
1070 1097 1.694525 GAAGGGAAGGGGAGGGGAG 60.695 68.421 0.00 0.00 0.00 4.30
1071 1098 2.459710 GAAGGGAAGGGGAGGGGA 59.540 66.667 0.00 0.00 0.00 4.81
1072 1099 2.696504 GGAAGGGAAGGGGAGGGG 60.697 72.222 0.00 0.00 0.00 4.79
1073 1100 1.694525 GAGGAAGGGAAGGGGAGGG 60.695 68.421 0.00 0.00 0.00 4.30
1082 1109 0.616111 GTCCAGAGCAGAGGAAGGGA 60.616 60.000 0.00 0.00 35.29 4.20
1123 1150 3.161450 TAGAGGTGGATGGGGCGC 61.161 66.667 0.00 0.00 0.00 6.53
1424 1507 1.003355 CCTTCTCCTTGGCGAGCAA 60.003 57.895 0.00 0.00 0.00 3.91
1522 1612 2.668550 AAGGCGAGCCGGAACAAC 60.669 61.111 5.05 0.00 41.95 3.32
1560 1650 6.096564 AGAGGCATGGTAGTTACAAGTAGTAC 59.903 42.308 0.00 0.00 30.91 2.73
1561 1651 6.192773 AGAGGCATGGTAGTTACAAGTAGTA 58.807 40.000 0.00 0.00 0.00 1.82
1562 1652 5.024118 AGAGGCATGGTAGTTACAAGTAGT 58.976 41.667 0.00 0.00 0.00 2.73
1572 1662 5.367937 ACATCTATCAAAGAGGCATGGTAGT 59.632 40.000 0.00 0.00 39.70 2.73
1685 1779 5.114081 GCTAAAGCTTAAATCCGGACTGTA 58.886 41.667 6.12 0.00 38.21 2.74
1686 1780 3.939592 GCTAAAGCTTAAATCCGGACTGT 59.060 43.478 6.12 0.00 38.21 3.55
1687 1781 3.938963 TGCTAAAGCTTAAATCCGGACTG 59.061 43.478 6.12 0.00 42.66 3.51
1688 1782 3.939592 GTGCTAAAGCTTAAATCCGGACT 59.060 43.478 6.12 0.00 42.66 3.85
1724 1822 0.673985 TCGGCTGGATCAGATAACCG 59.326 55.000 0.00 6.56 35.70 4.44
1760 1858 1.523711 GGTAGCAAGGCATAGCGCA 60.524 57.895 11.47 0.00 45.17 6.09
1891 1990 4.793353 GCCGACACTAGTAGATTAAGCCAG 60.793 50.000 3.59 0.00 0.00 4.85
2025 2152 1.804748 GGGTCCTAAAACTTCAGCACG 59.195 52.381 0.00 0.00 0.00 5.34
2026 2153 2.160205 GGGGTCCTAAAACTTCAGCAC 58.840 52.381 0.00 0.00 0.00 4.40
2092 4000 6.462073 TTCTGTTTATACACAAGCTCGAAC 57.538 37.500 0.00 0.00 0.00 3.95
2112 4038 4.104738 TGGAGGGAGTTCTGACAATTTTCT 59.895 41.667 0.00 0.00 0.00 2.52
2143 4069 3.665745 ACAAATTCAGTTGCCATGGTC 57.334 42.857 14.67 6.41 31.29 4.02
2144 4070 4.420522 AAACAAATTCAGTTGCCATGGT 57.579 36.364 14.67 0.00 31.29 3.55
2145 4071 5.754543 AAAAACAAATTCAGTTGCCATGG 57.245 34.783 7.63 7.63 31.29 3.66
2168 4402 1.339055 GCAGTGCCTCTGGTCACATTA 60.339 52.381 2.85 0.00 43.78 1.90
2183 4417 2.206750 GCCATTGCCATTAATGCAGTG 58.793 47.619 19.18 19.18 43.60 3.66
2328 4570 7.425595 GTGACAAAGAACTTTAGAAACTTGTCG 59.574 37.037 0.00 0.00 0.00 4.35
2400 5297 4.109766 GTGCTTACAACTTCCAACAAACC 58.890 43.478 0.00 0.00 0.00 3.27
2587 5487 8.268850 TCACCATGAAAAAGCTTATCTAGTTC 57.731 34.615 0.00 0.00 0.00 3.01
2593 5493 6.922957 TGTTGTTCACCATGAAAAAGCTTATC 59.077 34.615 0.00 1.95 38.22 1.75
2648 5548 4.787135 TTGCATGGAGATACAACCCATA 57.213 40.909 0.00 0.00 38.53 2.74
2846 5765 4.635765 TCTGATACTTTACAGCATTGCCAC 59.364 41.667 4.70 0.00 34.57 5.01
2885 5804 4.022068 AGTTTGGATTGCTTACCACATGTG 60.022 41.667 19.31 19.31 35.81 3.21
2946 5865 9.045223 GTATGTTGCATCTACAATAGTCAATCA 57.955 33.333 0.00 0.00 0.00 2.57
2952 5871 6.703607 GCAGAGTATGTTGCATCTACAATAGT 59.296 38.462 0.00 0.00 40.02 2.12
2994 5913 7.573710 TGTAGTTCTGTTATATGCCTTTGGAT 58.426 34.615 0.00 0.00 0.00 3.41
3015 5934 2.852748 CACGTCGGAGTTCTTCTGTAG 58.147 52.381 0.00 0.00 33.64 2.74
3040 5959 0.458025 GTGTGCCGGTGCTCTACTAC 60.458 60.000 1.90 0.00 38.71 2.73
3043 5962 1.004918 AAGTGTGCCGGTGCTCTAC 60.005 57.895 1.90 0.00 38.71 2.59
3053 5972 6.389906 AGCAATTTAATGTTAGAAGTGTGCC 58.610 36.000 0.00 0.00 0.00 5.01
3171 6091 7.757624 TGAAACAGAAAAAGTCATGTACAAACC 59.242 33.333 0.00 0.00 0.00 3.27
3172 6092 8.682128 TGAAACAGAAAAAGTCATGTACAAAC 57.318 30.769 0.00 1.24 0.00 2.93
3173 6093 7.487829 GCTGAAACAGAAAAAGTCATGTACAAA 59.512 33.333 0.00 0.00 32.44 2.83
3174 6094 6.972328 GCTGAAACAGAAAAAGTCATGTACAA 59.028 34.615 0.00 0.00 32.44 2.41
3175 6095 6.094742 TGCTGAAACAGAAAAAGTCATGTACA 59.905 34.615 0.00 0.00 32.44 2.90
3176 6096 6.494842 TGCTGAAACAGAAAAAGTCATGTAC 58.505 36.000 2.81 0.00 32.44 2.90
3177 6097 6.691754 TGCTGAAACAGAAAAAGTCATGTA 57.308 33.333 2.81 0.00 32.44 2.29
3178 6098 5.581126 TGCTGAAACAGAAAAAGTCATGT 57.419 34.783 2.81 0.00 32.44 3.21
3179 6099 8.752766 ATATTGCTGAAACAGAAAAAGTCATG 57.247 30.769 2.81 0.00 32.19 3.07
3180 6100 9.768662 AAATATTGCTGAAACAGAAAAAGTCAT 57.231 25.926 2.81 0.00 32.19 3.06
3181 6101 9.248291 GAAATATTGCTGAAACAGAAAAAGTCA 57.752 29.630 2.81 0.00 32.19 3.41
3182 6102 9.468532 AGAAATATTGCTGAAACAGAAAAAGTC 57.531 29.630 0.00 0.00 32.19 3.01
3183 6103 9.822185 AAGAAATATTGCTGAAACAGAAAAAGT 57.178 25.926 0.00 0.00 32.19 2.66
3224 6144 1.739067 AAGCTATCACGTGGGCTTTC 58.261 50.000 26.14 10.39 41.44 2.62
3231 6151 6.647212 TGTAATGAGAAAAGCTATCACGTG 57.353 37.500 9.94 9.94 0.00 4.49
3268 6188 8.880244 TGAATAGTGGATTATGCTATACTGGTT 58.120 33.333 0.00 0.00 0.00 3.67
3348 6271 6.809630 AAGAAGAATGAACTCCTACAAAGC 57.190 37.500 0.00 0.00 0.00 3.51
3384 6337 7.169476 GGCGAATTCTTCCAGAAGTATTACTAC 59.831 40.741 10.96 3.64 38.14 2.73
3386 6339 6.049790 GGCGAATTCTTCCAGAAGTATTACT 58.950 40.000 10.96 0.00 38.14 2.24
3390 6343 4.487714 TGGCGAATTCTTCCAGAAGTAT 57.512 40.909 11.01 0.83 37.69 2.12
3396 6349 2.749076 TCAACATGGCGAATTCTTCCAG 59.251 45.455 17.55 13.06 32.78 3.86
3448 6401 0.816825 ATGTGCTTGGGCTATGCGAG 60.817 55.000 4.36 0.00 39.59 5.03
3509 6462 9.399797 AGATTATGTTCTGCAAATAGACATGAA 57.600 29.630 0.00 0.00 0.00 2.57
3510 6463 8.969260 AGATTATGTTCTGCAAATAGACATGA 57.031 30.769 0.00 3.68 0.00 3.07
3520 6473 2.872245 GCCGCTAGATTATGTTCTGCAA 59.128 45.455 0.00 0.00 0.00 4.08
3558 6511 0.108138 ATAGACGCAAGAGGCACACC 60.108 55.000 0.00 0.00 45.17 4.16
3562 6515 0.175760 GACCATAGACGCAAGAGGCA 59.824 55.000 0.00 0.00 45.17 4.75
3569 6522 1.795872 CACAAAACGACCATAGACGCA 59.204 47.619 0.00 0.00 34.39 5.24
3577 6530 3.942115 TCTTCATGTTCACAAAACGACCA 59.058 39.130 0.00 0.00 0.00 4.02
3601 6554 9.559732 CACAAAGAAAAGGGGAAGAAAAATTAT 57.440 29.630 0.00 0.00 0.00 1.28
3603 6556 6.828273 CCACAAAGAAAAGGGGAAGAAAAATT 59.172 34.615 0.00 0.00 0.00 1.82
3618 6571 4.096382 GCACACTCTTTCTCCACAAAGAAA 59.904 41.667 0.00 0.00 40.97 2.52
3619 6572 3.627577 GCACACTCTTTCTCCACAAAGAA 59.372 43.478 0.00 0.00 40.97 2.52
3621 6574 2.945008 TGCACACTCTTTCTCCACAAAG 59.055 45.455 0.00 0.00 35.06 2.77
3627 6580 1.202698 ACTGGTGCACACTCTTTCTCC 60.203 52.381 20.43 0.00 0.00 3.71
3630 6583 1.334869 CCAACTGGTGCACACTCTTTC 59.665 52.381 20.43 0.00 0.00 2.62
3633 6586 0.546122 TTCCAACTGGTGCACACTCT 59.454 50.000 20.43 0.00 36.34 3.24
3652 6605 0.689623 AGTTGCAGCTAGGCTCAACT 59.310 50.000 20.38 20.38 44.07 3.16
3654 6607 0.979665 AGAGTTGCAGCTAGGCTCAA 59.020 50.000 1.86 0.00 36.40 3.02
3703 6656 1.320555 CAGCTACGATCCGTTTTCACG 59.679 52.381 0.00 0.00 46.71 4.35
3711 6664 4.653004 CATACTCATACAGCTACGATCCG 58.347 47.826 0.00 0.00 0.00 4.18
3712 6665 4.156922 AGCATACTCATACAGCTACGATCC 59.843 45.833 0.00 0.00 33.06 3.36
3716 6669 3.908978 CGAAGCATACTCATACAGCTACG 59.091 47.826 0.00 0.00 34.66 3.51
3720 6673 3.312828 CCTCGAAGCATACTCATACAGC 58.687 50.000 0.00 0.00 0.00 4.40
3734 6687 0.108138 ACTCCGAATTGCCCTCGAAG 60.108 55.000 1.18 0.00 38.61 3.79
3735 6688 1.187974 TACTCCGAATTGCCCTCGAA 58.812 50.000 1.18 0.00 38.61 3.71
3737 6690 1.202533 ACATACTCCGAATTGCCCTCG 60.203 52.381 0.00 0.00 36.06 4.63
3739 6692 2.026262 ACAACATACTCCGAATTGCCCT 60.026 45.455 0.00 0.00 0.00 5.19
3740 6693 2.365582 ACAACATACTCCGAATTGCCC 58.634 47.619 0.00 0.00 0.00 5.36
3741 6694 4.201881 GGTTACAACATACTCCGAATTGCC 60.202 45.833 0.00 0.00 0.00 4.52
3742 6695 4.634443 AGGTTACAACATACTCCGAATTGC 59.366 41.667 0.00 0.00 0.00 3.56
3744 6697 5.878669 GGAAGGTTACAACATACTCCGAATT 59.121 40.000 0.00 0.00 0.00 2.17
3745 6698 5.046159 TGGAAGGTTACAACATACTCCGAAT 60.046 40.000 0.00 0.00 0.00 3.34
3746 6699 4.283978 TGGAAGGTTACAACATACTCCGAA 59.716 41.667 0.00 0.00 0.00 4.30
3747 6700 3.833650 TGGAAGGTTACAACATACTCCGA 59.166 43.478 0.00 0.00 0.00 4.55
3748 6701 4.196626 TGGAAGGTTACAACATACTCCG 57.803 45.455 0.00 0.00 0.00 4.63
3749 6702 6.569801 GCTTTTGGAAGGTTACAACATACTCC 60.570 42.308 0.00 0.00 28.88 3.85
3750 6703 6.379386 GCTTTTGGAAGGTTACAACATACTC 58.621 40.000 0.00 0.00 28.88 2.59
3751 6704 5.048991 CGCTTTTGGAAGGTTACAACATACT 60.049 40.000 0.00 0.00 28.88 2.12
3752 6705 5.151389 CGCTTTTGGAAGGTTACAACATAC 58.849 41.667 0.00 0.00 28.88 2.39
3754 6707 3.634910 ACGCTTTTGGAAGGTTACAACAT 59.365 39.130 0.00 0.00 28.88 2.71
3755 6708 3.018149 ACGCTTTTGGAAGGTTACAACA 58.982 40.909 0.00 0.00 28.88 3.33
3756 6709 3.703286 ACGCTTTTGGAAGGTTACAAC 57.297 42.857 0.00 0.00 28.88 3.32
3757 6710 4.440387 GGAAACGCTTTTGGAAGGTTACAA 60.440 41.667 0.00 0.00 33.34 2.41
3759 6712 3.317149 AGGAAACGCTTTTGGAAGGTTAC 59.683 43.478 0.00 0.00 33.34 2.50
3760 6713 3.558033 AGGAAACGCTTTTGGAAGGTTA 58.442 40.909 0.00 0.00 33.34 2.85
3762 6715 1.954382 GAGGAAACGCTTTTGGAAGGT 59.046 47.619 0.00 0.00 33.34 3.50
3763 6716 2.030805 CAGAGGAAACGCTTTTGGAAGG 60.031 50.000 0.00 0.00 39.02 3.46
3764 6717 2.618709 ACAGAGGAAACGCTTTTGGAAG 59.381 45.455 0.00 0.00 39.02 3.46
3784 6947 1.860078 CGGGAGAAAACGAGCACAC 59.140 57.895 0.00 0.00 0.00 3.82
3846 7009 2.033194 GTCGAGTCCTTTTGCCGGG 61.033 63.158 2.18 0.00 0.00 5.73
3877 7040 1.228063 CTCCATGATCCGGCAAGGG 60.228 63.158 0.00 0.00 41.52 3.95
3878 7041 1.895707 GCTCCATGATCCGGCAAGG 60.896 63.158 0.00 0.00 42.97 3.61
3881 7044 4.916293 GCGCTCCATGATCCGGCA 62.916 66.667 0.00 0.00 0.00 5.69
3924 7087 0.193069 CCTCTCCATCTCCAGGGGAT 59.807 60.000 0.00 0.00 34.49 3.85
3983 7146 1.080434 GGTCCGTCAGTGAGCACTC 60.080 63.158 0.00 0.00 40.20 3.51
3984 7147 2.920645 CGGTCCGTCAGTGAGCACT 61.921 63.158 2.08 0.00 43.61 4.40
3986 7149 4.357947 GCGGTCCGTCAGTGAGCA 62.358 66.667 13.94 0.00 0.00 4.26
3987 7150 4.057428 AGCGGTCCGTCAGTGAGC 62.057 66.667 13.94 0.00 0.00 4.26
3988 7151 2.126307 CAGCGGTCCGTCAGTGAG 60.126 66.667 13.94 0.00 0.00 3.51
3989 7152 2.910479 ACAGCGGTCCGTCAGTGA 60.910 61.111 13.94 0.00 0.00 3.41
3990 7153 2.430921 GACAGCGGTCCGTCAGTG 60.431 66.667 13.94 8.18 38.12 3.66
3991 7154 4.039357 CGACAGCGGTCCGTCAGT 62.039 66.667 13.94 9.05 41.13 3.41
4013 7176 1.453155 CAAGACGGGCATGTAAGCTT 58.547 50.000 3.48 3.48 34.17 3.74
4015 7178 1.429423 GCAAGACGGGCATGTAAGC 59.571 57.895 0.00 0.00 0.00 3.09
4017 7180 3.883462 CGCAAGACGGGCATGTAA 58.117 55.556 0.00 0.00 43.02 2.41
4074 7237 2.574955 GCGCTATCCCCGGTCATCT 61.575 63.158 0.00 0.00 0.00 2.90
4082 7245 3.992317 GAGGACGGCGCTATCCCC 61.992 72.222 21.98 10.76 35.38 4.81
4132 7298 1.959226 CCAGTACTTGCCAACGCGT 60.959 57.895 5.58 5.58 38.08 6.01
4134 7300 0.794473 GTACCAGTACTTGCCAACGC 59.206 55.000 0.00 0.00 33.45 4.84
4135 7301 1.270412 TGGTACCAGTACTTGCCAACG 60.270 52.381 11.60 0.00 36.36 4.10
4136 7302 2.148768 GTGGTACCAGTACTTGCCAAC 58.851 52.381 16.93 0.00 36.36 3.77
4137 7303 1.769465 TGTGGTACCAGTACTTGCCAA 59.231 47.619 16.93 0.00 36.36 4.52
4138 7304 1.425694 TGTGGTACCAGTACTTGCCA 58.574 50.000 16.93 3.93 36.36 4.92
4139 7305 2.554370 TTGTGGTACCAGTACTTGCC 57.446 50.000 16.93 0.83 36.36 4.52
4140 7306 2.225727 GCTTTGTGGTACCAGTACTTGC 59.774 50.000 16.93 11.42 36.36 4.01
4141 7307 2.478894 CGCTTTGTGGTACCAGTACTTG 59.521 50.000 16.93 5.07 36.36 3.16
4142 7308 2.103601 ACGCTTTGTGGTACCAGTACTT 59.896 45.455 16.93 0.00 36.36 2.24
4143 7309 1.690352 ACGCTTTGTGGTACCAGTACT 59.310 47.619 16.93 0.00 36.36 2.73
4144 7310 2.064014 GACGCTTTGTGGTACCAGTAC 58.936 52.381 16.93 4.18 35.40 2.73
4145 7311 1.336148 CGACGCTTTGTGGTACCAGTA 60.336 52.381 16.93 4.54 0.00 2.74
4146 7312 0.599204 CGACGCTTTGTGGTACCAGT 60.599 55.000 16.93 8.55 0.00 4.00
4147 7313 0.319211 TCGACGCTTTGTGGTACCAG 60.319 55.000 16.93 4.45 0.00 4.00
4148 7314 0.598158 GTCGACGCTTTGTGGTACCA 60.598 55.000 11.60 11.60 0.00 3.25
4149 7315 0.598158 TGTCGACGCTTTGTGGTACC 60.598 55.000 11.62 4.43 0.00 3.34
4150 7316 1.389106 GATGTCGACGCTTTGTGGTAC 59.611 52.381 11.62 0.00 0.00 3.34
4151 7317 1.705256 GATGTCGACGCTTTGTGGTA 58.295 50.000 11.62 0.00 0.00 3.25
4152 7318 1.282248 CGATGTCGACGCTTTGTGGT 61.282 55.000 11.62 0.00 43.02 4.16
4153 7319 1.282248 ACGATGTCGACGCTTTGTGG 61.282 55.000 11.62 0.00 43.02 4.17
4154 7320 1.333115 TACGATGTCGACGCTTTGTG 58.667 50.000 11.62 0.00 43.02 3.33
4155 7321 2.273370 ATACGATGTCGACGCTTTGT 57.727 45.000 11.62 10.53 43.02 2.83
4156 7322 3.584344 GAAATACGATGTCGACGCTTTG 58.416 45.455 11.62 4.96 43.02 2.77
4157 7323 2.278094 CGAAATACGATGTCGACGCTTT 59.722 45.455 11.62 3.26 45.77 3.51
4158 7324 1.844357 CGAAATACGATGTCGACGCTT 59.156 47.619 11.62 1.80 45.77 4.68
4159 7325 1.063027 TCGAAATACGATGTCGACGCT 59.937 47.619 11.62 0.00 46.45 5.07
4236 7402 4.684134 ATGCGCCTGCCCCAGTTT 62.684 61.111 4.18 0.00 41.78 2.66
4297 7464 7.809546 TTATTATTATCATCGGTGGCACAAA 57.190 32.000 20.82 6.82 44.16 2.83
4335 7984 8.871686 AAGGAAAATGTAGTAGTTGCAAAAAG 57.128 30.769 0.00 0.00 0.00 2.27
4336 7985 9.092876 CAAAGGAAAATGTAGTAGTTGCAAAAA 57.907 29.630 0.00 0.00 0.00 1.94
4337 7986 7.708752 CCAAAGGAAAATGTAGTAGTTGCAAAA 59.291 33.333 0.00 0.00 0.00 2.44
4338 7987 7.068839 TCCAAAGGAAAATGTAGTAGTTGCAAA 59.931 33.333 0.00 0.00 0.00 3.68
4339 7988 6.547880 TCCAAAGGAAAATGTAGTAGTTGCAA 59.452 34.615 0.00 0.00 0.00 4.08
4341 7990 6.569179 TCCAAAGGAAAATGTAGTAGTTGC 57.431 37.500 0.00 0.00 0.00 4.17
4342 7991 7.333423 TCGATCCAAAGGAAAATGTAGTAGTTG 59.667 37.037 0.00 0.00 34.34 3.16
4343 7992 7.391620 TCGATCCAAAGGAAAATGTAGTAGTT 58.608 34.615 0.00 0.00 34.34 2.24
4345 7994 7.222999 GTCTCGATCCAAAGGAAAATGTAGTAG 59.777 40.741 0.00 0.00 34.34 2.57
4346 7995 7.039882 GTCTCGATCCAAAGGAAAATGTAGTA 58.960 38.462 0.00 0.00 34.34 1.82
4347 7996 5.875359 GTCTCGATCCAAAGGAAAATGTAGT 59.125 40.000 0.00 0.00 34.34 2.73
4425 8085 6.508088 GCGAACAGATGAACCTATAAAACTCG 60.508 42.308 0.00 0.00 0.00 4.18
4436 8109 4.373348 ACTACTAGCGAACAGATGAACC 57.627 45.455 0.00 0.00 0.00 3.62
4448 8121 5.179742 CAGGAGGAACATACTACTACTAGCG 59.820 48.000 0.00 0.00 0.00 4.26
4451 8124 6.363065 CCACAGGAGGAACATACTACTACTA 58.637 44.000 0.00 0.00 0.00 1.82
4452 8125 5.202004 CCACAGGAGGAACATACTACTACT 58.798 45.833 0.00 0.00 0.00 2.57
4453 8126 4.202131 GCCACAGGAGGAACATACTACTAC 60.202 50.000 0.00 0.00 0.00 2.73
4517 8190 4.796606 AGGGGTTCAAATCCAGACATATG 58.203 43.478 0.00 0.00 0.00 1.78
4554 8227 3.755378 GCTGACAGTCAAATCCAGACATT 59.245 43.478 4.41 0.00 38.46 2.71
4555 8228 3.341823 GCTGACAGTCAAATCCAGACAT 58.658 45.455 4.41 0.00 38.46 3.06
4556 8229 2.550855 GGCTGACAGTCAAATCCAGACA 60.551 50.000 4.41 0.00 38.46 3.41
4557 8230 2.079925 GGCTGACAGTCAAATCCAGAC 58.920 52.381 4.41 0.00 36.26 3.51
4558 8231 1.338105 CGGCTGACAGTCAAATCCAGA 60.338 52.381 8.00 0.00 0.00 3.86
4559 8232 1.081892 CGGCTGACAGTCAAATCCAG 58.918 55.000 8.00 0.00 0.00 3.86
4560 8233 0.684535 TCGGCTGACAGTCAAATCCA 59.315 50.000 8.00 0.00 0.00 3.41
4561 8234 1.936547 GATCGGCTGACAGTCAAATCC 59.063 52.381 8.00 5.51 0.00 3.01
4562 8235 2.863137 GAGATCGGCTGACAGTCAAATC 59.137 50.000 8.00 9.27 0.00 2.17
4563 8236 2.736719 CGAGATCGGCTGACAGTCAAAT 60.737 50.000 8.00 0.00 35.37 2.32
4564 8237 1.402852 CGAGATCGGCTGACAGTCAAA 60.403 52.381 8.00 0.00 35.37 2.69
4565 8238 0.171231 CGAGATCGGCTGACAGTCAA 59.829 55.000 8.00 0.00 35.37 3.18
4566 8239 1.803289 CGAGATCGGCTGACAGTCA 59.197 57.895 8.00 2.48 35.37 3.41
4567 8240 4.700037 CGAGATCGGCTGACAGTC 57.300 61.111 0.00 0.00 35.37 3.51
4631 8304 8.441608 CAATCTCTGAACAACTTACAATCTCTG 58.558 37.037 0.00 0.00 0.00 3.35
4727 8400 9.007901 CAAAGGAATCAGAGAAACAATCTTAGT 57.992 33.333 0.00 0.00 38.96 2.24
4728 8401 9.224267 TCAAAGGAATCAGAGAAACAATCTTAG 57.776 33.333 0.00 0.00 38.96 2.18
4836 8509 9.799106 AGTACTCCCTACGTAAGCTAATATAAA 57.201 33.333 0.00 0.00 45.62 1.40
4852 8525 6.042781 ACATCACAGTTTTGAAGTACTCCCTA 59.957 38.462 0.00 0.00 0.00 3.53
4905 8578 9.844790 CTGTCAATAATAAGCAAAACAATCTCA 57.155 29.630 0.00 0.00 0.00 3.27
4952 8625 9.040939 CGTAATCTGTACAATGTATGGATTCAA 57.959 33.333 19.11 7.71 0.00 2.69
4953 8626 8.417884 TCGTAATCTGTACAATGTATGGATTCA 58.582 33.333 19.11 3.93 0.00 2.57
4954 8627 8.812147 TCGTAATCTGTACAATGTATGGATTC 57.188 34.615 19.11 13.25 0.00 2.52
4955 8628 9.261180 CTTCGTAATCTGTACAATGTATGGATT 57.739 33.333 19.32 19.32 0.00 3.01
4995 8668 7.707035 GGGATTATATAGTAGTCCGATTGCAAG 59.293 40.741 4.94 0.00 0.00 4.01
5003 8676 6.321690 CCAGAAGGGGATTATATAGTAGTCCG 59.678 46.154 0.00 0.00 0.00 4.79
5004 8677 6.098552 GCCAGAAGGGGATTATATAGTAGTCC 59.901 46.154 0.00 0.00 37.04 3.85
5076 8749 3.181486 CGTGGCTGTAGATGCTCTAAAGA 60.181 47.826 12.15 0.00 36.60 2.52
5103 8777 1.329913 ATTTGAGGGGCCGGAATTGC 61.330 55.000 5.05 0.00 0.00 3.56
5136 8810 7.777095 TGTAAATTACATTATTTGAGGGGTGC 58.223 34.615 1.08 0.00 32.89 5.01
5153 8827 6.671614 ATTGAGGCGTTCGAATGTAAATTA 57.328 33.333 18.22 1.73 0.00 1.40
5157 8831 5.049336 TGAAAATTGAGGCGTTCGAATGTAA 60.049 36.000 18.22 9.39 0.00 2.41
5163 8837 5.116180 AGATATGAAAATTGAGGCGTTCGA 58.884 37.500 0.00 0.00 0.00 3.71
5168 8842 6.860023 GGATTTGAGATATGAAAATTGAGGCG 59.140 38.462 0.00 0.00 0.00 5.52
5187 8861 6.392354 AGTTGCATGAGTTTGTATGGATTTG 58.608 36.000 0.00 0.00 0.00 2.32
5217 8891 2.443260 TAGCCGGACAATGCGTGTGT 62.443 55.000 5.05 0.00 41.96 3.72
5241 8918 8.540492 CCGATGACATGTTTAGTTAGTAATGAC 58.460 37.037 0.00 0.00 0.00 3.06
5245 8922 7.833786 AGTCCGATGACATGTTTAGTTAGTAA 58.166 34.615 0.00 0.00 44.33 2.24
5261 8938 8.262227 ACATACTAAATTTTGGTAGTCCGATGA 58.738 33.333 10.54 0.00 36.30 2.92
5283 8960 6.000246 TGATCTTCACCATAGCCAAACATA 58.000 37.500 0.00 0.00 0.00 2.29
5311 8988 2.747855 GAAGGGCAAGGGCAGTCG 60.748 66.667 0.00 0.00 43.71 4.18
5333 9010 1.446272 GAGAAGGACGACAAGGGCG 60.446 63.158 0.00 0.00 0.00 6.13
5361 9038 4.465512 TACCGCGTCTTCGACCGC 62.466 66.667 4.92 11.96 39.71 5.68
5405 9082 1.000283 GCAGAGTATGAGTCCCATCCG 60.000 57.143 0.00 0.00 36.71 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.