Multiple sequence alignment - TraesCS7A01G400300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G400300 chr7A 100.000 3086 0 0 1 3086 580477219 580480304 0.000000e+00 5699.0
1 TraesCS7A01G400300 chr7A 94.630 1583 59 9 853 2430 580500172 580501733 0.000000e+00 2429.0
2 TraesCS7A01G400300 chr7B 90.573 2164 132 25 887 3000 537729545 537731686 0.000000e+00 2800.0
3 TraesCS7A01G400300 chr7B 84.362 697 77 18 14 686 537721315 537722003 0.000000e+00 654.0
4 TraesCS7A01G400300 chr7D 93.318 1287 73 7 961 2235 509569388 509570673 0.000000e+00 1888.0
5 TraesCS7A01G400300 chr7D 88.759 427 42 5 291 713 509562682 509563106 4.560000e-143 518.0
6 TraesCS7A01G400300 chr7D 89.222 167 18 0 547 713 509567320 509567486 3.120000e-50 209.0
7 TraesCS7A01G400300 chr5D 89.222 167 16 1 2680 2844 26714389 26714555 1.120000e-49 207.0
8 TraesCS7A01G400300 chr5D 89.130 46 4 1 3009 3053 26714879 26714924 4.300000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G400300 chr7A 580477219 580480304 3085 False 5699.0 5699 100.000 1 3086 1 chr7A.!!$F1 3085
1 TraesCS7A01G400300 chr7A 580500172 580501733 1561 False 2429.0 2429 94.630 853 2430 1 chr7A.!!$F2 1577
2 TraesCS7A01G400300 chr7B 537729545 537731686 2141 False 2800.0 2800 90.573 887 3000 1 chr7B.!!$F2 2113
3 TraesCS7A01G400300 chr7B 537721315 537722003 688 False 654.0 654 84.362 14 686 1 chr7B.!!$F1 672
4 TraesCS7A01G400300 chr7D 509567320 509570673 3353 False 1048.5 1888 91.270 547 2235 2 chr7D.!!$F2 1688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 348 0.456628 TTCGTCTGACACAACCGACA 59.543 50.0 8.73 0.0 0.0 4.35 F
836 2495 0.886563 AACTCGAACACTACCCGGAG 59.113 55.0 0.73 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 3655 0.877071 TGGAGACCGAACGTAGTCAC 59.123 55.0 13.73 8.51 45.00 3.67 R
2632 4352 0.318445 GGCTGCTGCTTGTGTTTCTG 60.318 55.0 15.64 0.00 39.59 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 74 2.281539 TGACTCGTGTTCCTAGGTGA 57.718 50.000 9.08 0.00 0.00 4.02
81 92 5.491982 GTGTTCCTAGGTGATGACTTTGAT 58.508 41.667 9.08 0.00 0.00 2.57
86 97 4.080919 CCTAGGTGATGACTTTGATGGTGA 60.081 45.833 0.00 0.00 0.00 4.02
89 100 4.226846 AGGTGATGACTTTGATGGTGAGAT 59.773 41.667 0.00 0.00 0.00 2.75
99 110 6.823689 ACTTTGATGGTGAGATTGGTATGTAC 59.176 38.462 0.00 0.00 0.00 2.90
101 112 4.968719 TGATGGTGAGATTGGTATGTACCT 59.031 41.667 10.36 0.00 46.58 3.08
108 119 6.095440 GTGAGATTGGTATGTACCTTTTGCAT 59.905 38.462 10.36 0.00 46.58 3.96
121 132 3.131046 CCTTTTGCATGGGTATGTTCTCC 59.869 47.826 0.00 0.00 36.65 3.71
141 152 4.947883 TCCTCACCTTCCTTGATCTTCTA 58.052 43.478 0.00 0.00 0.00 2.10
142 153 4.959210 TCCTCACCTTCCTTGATCTTCTAG 59.041 45.833 0.00 0.00 0.00 2.43
143 154 4.959210 CCTCACCTTCCTTGATCTTCTAGA 59.041 45.833 0.00 0.00 0.00 2.43
144 155 5.602145 CCTCACCTTCCTTGATCTTCTAGAT 59.398 44.000 0.00 0.00 37.73 1.98
146 157 7.288852 CCTCACCTTCCTTGATCTTCTAGATAA 59.711 40.741 0.00 0.00 34.53 1.75
147 158 8.789767 TCACCTTCCTTGATCTTCTAGATAAT 57.210 34.615 0.00 0.00 34.53 1.28
148 159 9.218525 TCACCTTCCTTGATCTTCTAGATAATT 57.781 33.333 0.00 0.00 34.53 1.40
149 160 9.487790 CACCTTCCTTGATCTTCTAGATAATTC 57.512 37.037 0.00 0.00 34.53 2.17
150 161 9.218525 ACCTTCCTTGATCTTCTAGATAATTCA 57.781 33.333 0.00 0.00 34.53 2.57
188 201 9.722056 ACAACGATGCTTTGATTTAAGATAATC 57.278 29.630 0.00 0.00 35.54 1.75
220 243 6.857451 CGACAAAGATGTTGTGATTTCATTCA 59.143 34.615 0.00 0.00 40.74 2.57
221 244 7.539710 CGACAAAGATGTTGTGATTTCATTCAT 59.460 33.333 0.00 0.00 40.74 2.57
228 251 6.316319 TGTTGTGATTTCATTCATGTGATCG 58.684 36.000 0.00 0.00 0.00 3.69
245 268 7.837202 TGTGATCGGTTACTAGTTTTATTGG 57.163 36.000 0.00 0.00 0.00 3.16
318 341 8.948853 GAATTTTATCAAATTCGTCTGACACA 57.051 30.769 8.73 0.00 45.23 3.72
322 345 2.542178 TCAAATTCGTCTGACACAACCG 59.458 45.455 8.73 0.00 0.00 4.44
323 346 2.519377 AATTCGTCTGACACAACCGA 57.481 45.000 8.73 0.00 0.00 4.69
325 348 0.456628 TTCGTCTGACACAACCGACA 59.543 50.000 8.73 0.00 0.00 4.35
336 359 7.433719 TCTGACACAACCGACAATTTAAAATTG 59.566 33.333 0.00 0.00 35.29 2.32
378 401 2.271800 TCGCCGTTTTGCACAATTTTT 58.728 38.095 0.00 0.00 0.00 1.94
380 403 2.222908 CGCCGTTTTGCACAATTTTTGT 60.223 40.909 0.00 0.00 46.75 2.83
415 438 6.378710 TTTTGTTTTGACGGACATGTATGA 57.621 33.333 0.00 0.00 0.00 2.15
453 476 7.880713 TCTCCTTGTTGTATTTGTGCTATAACA 59.119 33.333 0.00 0.00 31.12 2.41
491 514 1.915350 CATGTGAATGTGTTCATGCGC 59.085 47.619 0.00 0.00 45.46 6.09
494 517 1.869132 GAATGTGTTCATGCGCGCC 60.869 57.895 30.77 13.48 34.19 6.53
496 519 2.531927 AATGTGTTCATGCGCGCCTG 62.532 55.000 30.77 28.99 34.19 4.85
499 522 2.502510 GTTCATGCGCGCCTGTTG 60.503 61.111 30.72 21.38 0.00 3.33
510 533 2.123939 CCTGTTGTGTGGCCACCA 60.124 61.111 32.62 25.33 41.09 4.17
516 539 1.344114 GTTGTGTGGCCACCATTTCAT 59.656 47.619 32.62 0.00 41.09 2.57
517 540 2.560542 GTTGTGTGGCCACCATTTCATA 59.439 45.455 32.62 8.94 41.09 2.15
528 551 5.510520 GCCACCATTTCATAAAGTTGTTCCA 60.511 40.000 0.00 0.00 0.00 3.53
544 567 2.254546 TCCAAGTGTGATGGTGTGAC 57.745 50.000 0.00 0.00 39.09 3.67
545 568 1.488393 TCCAAGTGTGATGGTGTGACA 59.512 47.619 0.00 0.00 39.09 3.58
552 575 4.997395 AGTGTGATGGTGTGACATAAGTTC 59.003 41.667 0.00 0.00 0.00 3.01
558 581 6.316890 TGATGGTGTGACATAAGTTCATCATG 59.683 38.462 7.39 0.00 35.47 3.07
561 584 5.412594 GGTGTGACATAAGTTCATCATGTGT 59.587 40.000 0.00 0.00 33.16 3.72
566 589 8.503196 GTGACATAAGTTCATCATGTGTACAAA 58.497 33.333 0.00 0.00 33.16 2.83
575 598 6.475504 TCATCATGTGTACAAAAGGTGAGAT 58.524 36.000 0.00 0.00 0.00 2.75
578 601 7.905604 TCATGTGTACAAAAGGTGAGATTAG 57.094 36.000 0.00 0.00 0.00 1.73
583 606 6.821665 GTGTACAAAAGGTGAGATTAGCCATA 59.178 38.462 0.00 0.00 0.00 2.74
597 620 6.994496 AGATTAGCCATATGCGCATATGTAAT 59.006 34.615 44.48 40.13 45.66 1.89
693 716 1.598701 GGAGAGGCAATGTGGGCAAC 61.599 60.000 0.00 0.00 35.46 4.17
726 749 5.818857 GTGTAAAACACTGGGAAAGTACTCA 59.181 40.000 0.00 0.00 45.27 3.41
728 751 6.885376 TGTAAAACACTGGGAAAGTACTCAAA 59.115 34.615 0.00 0.00 36.83 2.69
729 752 7.558444 TGTAAAACACTGGGAAAGTACTCAAAT 59.442 33.333 0.00 0.00 36.83 2.32
730 753 7.418337 AAAACACTGGGAAAGTACTCAAATT 57.582 32.000 0.00 0.00 36.83 1.82
731 754 6.635030 AACACTGGGAAAGTACTCAAATTC 57.365 37.500 0.00 0.00 36.83 2.17
732 755 5.690865 ACACTGGGAAAGTACTCAAATTCA 58.309 37.500 0.00 0.00 36.83 2.57
735 758 7.086376 CACTGGGAAAGTACTCAAATTCATTG 58.914 38.462 0.00 0.00 36.83 2.82
736 759 6.209391 ACTGGGAAAGTACTCAAATTCATTGG 59.791 38.462 0.00 0.00 37.36 3.16
737 760 6.310941 TGGGAAAGTACTCAAATTCATTGGA 58.689 36.000 0.00 0.00 39.62 3.53
738 761 6.434028 TGGGAAAGTACTCAAATTCATTGGAG 59.566 38.462 0.00 2.76 39.62 3.86
739 762 6.434340 GGGAAAGTACTCAAATTCATTGGAGT 59.566 38.462 13.13 13.13 39.62 3.85
748 931 7.442969 ACTCAAATTCATTGGAGTACGTACAAA 59.557 33.333 26.55 17.41 39.62 2.83
753 936 6.922247 TCATTGGAGTACGTACAAACAAAA 57.078 33.333 26.55 16.00 0.00 2.44
755 938 7.411274 TCATTGGAGTACGTACAAACAAAAAG 58.589 34.615 26.55 18.59 0.00 2.27
757 940 4.206088 GGAGTACGTACAAACAAAAAGCG 58.794 43.478 26.55 0.00 0.00 4.68
779 2438 6.015940 AGCGGATGAAGAAATGAAGAAAAACT 60.016 34.615 0.00 0.00 0.00 2.66
789 2448 5.845391 ATGAAGAAAAACTGAAAACCCGA 57.155 34.783 0.00 0.00 0.00 5.14
799 2458 9.819267 AAAAACTGAAAACCCGATATAAAAACA 57.181 25.926 0.00 0.00 0.00 2.83
800 2459 8.806177 AAACTGAAAACCCGATATAAAAACAC 57.194 30.769 0.00 0.00 0.00 3.32
801 2460 6.604930 ACTGAAAACCCGATATAAAAACACG 58.395 36.000 0.00 0.00 0.00 4.49
803 2462 5.048921 TGAAAACCCGATATAAAAACACGCA 60.049 36.000 0.00 0.00 0.00 5.24
804 2463 4.345271 AACCCGATATAAAAACACGCAC 57.655 40.909 0.00 0.00 0.00 5.34
805 2464 2.679336 ACCCGATATAAAAACACGCACC 59.321 45.455 0.00 0.00 0.00 5.01
806 2465 2.678836 CCCGATATAAAAACACGCACCA 59.321 45.455 0.00 0.00 0.00 4.17
807 2466 3.127203 CCCGATATAAAAACACGCACCAA 59.873 43.478 0.00 0.00 0.00 3.67
808 2467 4.339429 CCGATATAAAAACACGCACCAAG 58.661 43.478 0.00 0.00 0.00 3.61
833 2492 2.144482 ACAAACTCGAACACTACCCG 57.856 50.000 0.00 0.00 0.00 5.28
836 2495 0.886563 AACTCGAACACTACCCGGAG 59.113 55.000 0.73 0.00 0.00 4.63
850 2509 4.699522 GGAGGCCGGAACACGCTT 62.700 66.667 5.05 0.00 42.52 4.68
851 2510 3.119096 GAGGCCGGAACACGCTTC 61.119 66.667 5.05 0.00 42.52 3.86
854 2542 3.774702 GCCGGAACACGCTTCGTC 61.775 66.667 5.05 0.00 38.32 4.20
875 2565 4.360951 CCCGGCTATTGTAGGGAATAAA 57.639 45.455 0.00 0.00 46.64 1.40
878 2568 5.009310 CCCGGCTATTGTAGGGAATAAAAAC 59.991 44.000 0.00 0.00 46.64 2.43
879 2569 5.277634 CCGGCTATTGTAGGGAATAAAAACG 60.278 44.000 0.00 0.00 0.00 3.60
884 2574 9.269453 GCTATTGTAGGGAATAAAAACGATACT 57.731 33.333 0.00 0.00 0.00 2.12
982 2675 2.091541 GGGATTGAATCAAACTCGCCA 58.908 47.619 7.56 0.00 0.00 5.69
1209 2906 4.172512 CCCGAGCAGCTGCCAGAT 62.173 66.667 34.39 17.05 43.38 2.90
1212 2909 2.203181 GAGCAGCTGCCAGATCCC 60.203 66.667 34.39 11.53 43.38 3.85
1845 3542 4.803426 GACCGCGAGAGGCACCTG 62.803 72.222 8.23 0.00 43.84 4.00
1898 3602 2.492449 TACTGCCTGCTCGAGTGTGC 62.492 60.000 15.13 13.92 35.20 4.57
1951 3655 2.038269 GCCCACCGTGTGTACCATG 61.038 63.158 0.00 0.00 0.00 3.66
2126 3830 2.931969 GGCTTAATTGTGCTGGAAATGC 59.068 45.455 4.86 0.00 0.00 3.56
2139 3846 5.300034 TGCTGGAAATGCTACTATGATTTGG 59.700 40.000 0.00 0.00 0.00 3.28
2162 3869 4.521146 GCTGAGAATCCAGATTTTCCTCA 58.479 43.478 8.07 8.54 36.29 3.86
2163 3870 5.131784 GCTGAGAATCCAGATTTTCCTCAT 58.868 41.667 9.45 0.00 36.29 2.90
2190 3897 8.856490 AGTTTCATCTTTTGTAATGTGTTGTC 57.144 30.769 0.00 0.00 0.00 3.18
2450 4170 6.676990 AATGATCTGGTGCTATCATAGTCA 57.323 37.500 0.00 0.00 40.98 3.41
2482 4202 5.104562 CAGATGTTGCAAGCCATATGTAG 57.895 43.478 13.64 0.00 0.00 2.74
2613 4333 7.201956 GGCAGAGATCCTTCAGAAGATAACTAA 60.202 40.741 12.14 0.00 0.00 2.24
2643 4363 6.422776 ACTGACACTTAACAGAAACACAAG 57.577 37.500 0.00 0.00 37.54 3.16
2654 4374 4.982701 ACACAAGCAGCAGCCCCC 62.983 66.667 0.00 0.00 43.56 5.40
2657 4377 2.356278 CAAGCAGCAGCCCCCTAA 59.644 61.111 0.00 0.00 43.56 2.69
2667 4387 3.398967 AGCAGCCCCCTAATCATAATTCA 59.601 43.478 0.00 0.00 0.00 2.57
2671 4391 5.651139 CAGCCCCCTAATCATAATTCATGAG 59.349 44.000 0.00 0.00 46.76 2.90
2707 4427 2.833943 ACAGGCAAAAATGATTCCTCCC 59.166 45.455 0.00 0.00 0.00 4.30
2714 4434 5.355071 GCAAAAATGATTCCTCCCAAAATCC 59.645 40.000 0.00 0.00 32.11 3.01
2718 4438 3.620488 TGATTCCTCCCAAAATCCGAAG 58.380 45.455 0.00 0.00 32.11 3.79
2757 4477 3.560068 AGCGTTTCACAAGGACTAAACAG 59.440 43.478 0.00 0.00 32.61 3.16
2797 4517 5.459536 AATGAAGGGAAAAACTGAGAAGC 57.540 39.130 0.00 0.00 0.00 3.86
2799 4519 2.294449 AGGGAAAAACTGAGAAGCCC 57.706 50.000 0.00 0.00 0.00 5.19
2823 4543 7.136119 CCGTGCTGAAATACAAACTAAGAAAA 58.864 34.615 0.00 0.00 0.00 2.29
2831 4551 8.762481 AAATACAAACTAAGAAAAGGGACAGT 57.238 30.769 0.00 0.00 0.00 3.55
2832 4552 7.745620 ATACAAACTAAGAAAAGGGACAGTG 57.254 36.000 0.00 0.00 0.00 3.66
2833 4553 5.751586 ACAAACTAAGAAAAGGGACAGTGA 58.248 37.500 0.00 0.00 0.00 3.41
2834 4554 6.184789 ACAAACTAAGAAAAGGGACAGTGAA 58.815 36.000 0.00 0.00 0.00 3.18
2835 4555 6.095021 ACAAACTAAGAAAAGGGACAGTGAAC 59.905 38.462 0.00 0.00 0.00 3.18
2836 4556 5.632034 ACTAAGAAAAGGGACAGTGAACT 57.368 39.130 0.00 0.00 0.00 3.01
2837 4557 6.742559 ACTAAGAAAAGGGACAGTGAACTA 57.257 37.500 0.00 0.00 0.00 2.24
2855 4603 6.629252 GTGAACTAAAGCAAGAAGAGAAAACG 59.371 38.462 0.00 0.00 0.00 3.60
2873 4621 6.811170 AGAAAACGCTGAAGAAACAATGAAAA 59.189 30.769 0.00 0.00 0.00 2.29
2878 4626 5.743398 CGCTGAAGAAACAATGAAAACTGAA 59.257 36.000 0.00 0.00 0.00 3.02
2883 4631 8.303156 TGAAGAAACAATGAAAACTGAAACTGA 58.697 29.630 0.00 0.00 0.00 3.41
2927 4675 5.505173 AGAGAAAATGAACAACACACTGG 57.495 39.130 0.00 0.00 0.00 4.00
2937 4685 5.047021 TGAACAACACACTGGAATGGAAAAA 60.047 36.000 0.00 0.00 0.00 1.94
2966 4714 6.859112 AAAAGATAGCTGAGAGGAACACTA 57.141 37.500 0.00 0.00 0.00 2.74
2976 4724 6.042638 TGAGAGGAACACTAAGAGGAAATG 57.957 41.667 0.00 0.00 0.00 2.32
3006 4754 6.581171 AAAATTGAGAGGACTGAATGGAAC 57.419 37.500 0.00 0.00 30.96 3.62
3020 4768 2.910688 TGGAACACTGAGAGGAACAC 57.089 50.000 0.00 0.00 0.00 3.32
3021 4769 2.398588 TGGAACACTGAGAGGAACACT 58.601 47.619 0.00 0.00 0.00 3.55
3022 4770 2.103094 TGGAACACTGAGAGGAACACTG 59.897 50.000 0.00 0.00 0.00 3.66
3023 4771 2.365617 GGAACACTGAGAGGAACACTGA 59.634 50.000 0.00 0.00 0.00 3.41
3024 4772 3.553922 GGAACACTGAGAGGAACACTGAG 60.554 52.174 0.00 0.00 36.28 3.35
3025 4773 2.950781 ACACTGAGAGGAACACTGAGA 58.049 47.619 0.00 0.00 33.70 3.27
3026 4774 2.890311 ACACTGAGAGGAACACTGAGAG 59.110 50.000 0.00 0.00 33.70 3.20
3027 4775 2.230992 CACTGAGAGGAACACTGAGAGG 59.769 54.545 0.00 0.00 33.70 3.69
3028 4776 2.109128 ACTGAGAGGAACACTGAGAGGA 59.891 50.000 0.00 0.00 33.70 3.71
3029 4777 3.161067 CTGAGAGGAACACTGAGAGGAA 58.839 50.000 0.00 0.00 31.46 3.36
3030 4778 3.576118 CTGAGAGGAACACTGAGAGGAAA 59.424 47.826 0.00 0.00 31.46 3.13
3031 4779 4.163427 TGAGAGGAACACTGAGAGGAAAT 58.837 43.478 0.00 0.00 0.00 2.17
3032 4780 4.020751 TGAGAGGAACACTGAGAGGAAATG 60.021 45.833 0.00 0.00 0.00 2.32
3033 4781 4.163427 AGAGGAACACTGAGAGGAAATGA 58.837 43.478 0.00 0.00 0.00 2.57
3034 4782 4.594920 AGAGGAACACTGAGAGGAAATGAA 59.405 41.667 0.00 0.00 0.00 2.57
3035 4783 5.072329 AGAGGAACACTGAGAGGAAATGAAA 59.928 40.000 0.00 0.00 0.00 2.69
3036 4784 5.885465 AGGAACACTGAGAGGAAATGAAAT 58.115 37.500 0.00 0.00 0.00 2.17
3037 4785 7.020827 AGGAACACTGAGAGGAAATGAAATA 57.979 36.000 0.00 0.00 0.00 1.40
3038 4786 6.881602 AGGAACACTGAGAGGAAATGAAATAC 59.118 38.462 0.00 0.00 0.00 1.89
3039 4787 6.881602 GGAACACTGAGAGGAAATGAAATACT 59.118 38.462 0.00 0.00 0.00 2.12
3040 4788 7.148340 GGAACACTGAGAGGAAATGAAATACTG 60.148 40.741 0.00 0.00 0.00 2.74
3041 4789 7.009179 ACACTGAGAGGAAATGAAATACTGA 57.991 36.000 0.00 0.00 0.00 3.41
3042 4790 7.628234 ACACTGAGAGGAAATGAAATACTGAT 58.372 34.615 0.00 0.00 0.00 2.90
3043 4791 7.768120 ACACTGAGAGGAAATGAAATACTGATC 59.232 37.037 0.00 0.00 0.00 2.92
3044 4792 7.986320 CACTGAGAGGAAATGAAATACTGATCT 59.014 37.037 0.00 0.00 0.00 2.75
3045 4793 7.986320 ACTGAGAGGAAATGAAATACTGATCTG 59.014 37.037 0.00 0.00 0.00 2.90
3046 4794 8.082672 TGAGAGGAAATGAAATACTGATCTGA 57.917 34.615 6.60 0.00 0.00 3.27
3047 4795 8.202811 TGAGAGGAAATGAAATACTGATCTGAG 58.797 37.037 6.60 0.00 0.00 3.35
3048 4796 8.316497 AGAGGAAATGAAATACTGATCTGAGA 57.684 34.615 6.60 0.00 0.00 3.27
3049 4797 8.423349 AGAGGAAATGAAATACTGATCTGAGAG 58.577 37.037 6.60 0.00 0.00 3.20
3050 4798 7.507829 AGGAAATGAAATACTGATCTGAGAGG 58.492 38.462 6.60 0.00 0.00 3.69
3051 4799 7.346698 AGGAAATGAAATACTGATCTGAGAGGA 59.653 37.037 6.60 0.00 0.00 3.71
3052 4800 7.440856 GGAAATGAAATACTGATCTGAGAGGAC 59.559 40.741 6.60 0.00 0.00 3.85
3053 4801 7.673641 AATGAAATACTGATCTGAGAGGACT 57.326 36.000 6.60 0.00 0.00 3.85
3054 4802 6.462552 TGAAATACTGATCTGAGAGGACTG 57.537 41.667 6.60 0.00 0.00 3.51
3055 4803 6.190587 TGAAATACTGATCTGAGAGGACTGA 58.809 40.000 6.60 0.00 0.00 3.41
3056 4804 6.665248 TGAAATACTGATCTGAGAGGACTGAA 59.335 38.462 6.60 0.00 0.00 3.02
3057 4805 7.179160 TGAAATACTGATCTGAGAGGACTGAAA 59.821 37.037 6.60 0.00 0.00 2.69
3058 4806 6.713762 ATACTGATCTGAGAGGACTGAAAG 57.286 41.667 6.60 0.00 42.29 2.62
3059 4807 3.768757 ACTGATCTGAGAGGACTGAAAGG 59.231 47.826 6.60 0.00 39.30 3.11
3060 4808 4.022603 CTGATCTGAGAGGACTGAAAGGA 58.977 47.826 0.00 0.00 39.30 3.36
3061 4809 4.420206 TGATCTGAGAGGACTGAAAGGAA 58.580 43.478 0.00 0.00 39.30 3.36
3062 4810 4.221703 TGATCTGAGAGGACTGAAAGGAAC 59.778 45.833 0.00 0.00 39.30 3.62
3063 4811 3.576861 TCTGAGAGGACTGAAAGGAACA 58.423 45.455 0.00 0.00 39.30 3.18
3064 4812 3.322254 TCTGAGAGGACTGAAAGGAACAC 59.678 47.826 0.00 0.00 39.30 3.32
3065 4813 3.309296 TGAGAGGACTGAAAGGAACACT 58.691 45.455 0.00 0.00 39.30 3.55
3066 4814 3.070159 TGAGAGGACTGAAAGGAACACTG 59.930 47.826 0.00 0.00 39.30 3.66
3067 4815 3.041946 AGAGGACTGAAAGGAACACTGT 58.958 45.455 0.00 0.00 39.30 3.55
3068 4816 4.223953 AGAGGACTGAAAGGAACACTGTA 58.776 43.478 0.00 0.00 39.30 2.74
3069 4817 4.841246 AGAGGACTGAAAGGAACACTGTAT 59.159 41.667 0.00 0.00 39.30 2.29
3070 4818 6.017192 AGAGGACTGAAAGGAACACTGTATA 58.983 40.000 0.00 0.00 39.30 1.47
3071 4819 6.497259 AGAGGACTGAAAGGAACACTGTATAA 59.503 38.462 0.00 0.00 39.30 0.98
3072 4820 7.016268 AGAGGACTGAAAGGAACACTGTATAAA 59.984 37.037 0.00 0.00 39.30 1.40
3073 4821 7.514721 AGGACTGAAAGGAACACTGTATAAAA 58.485 34.615 0.00 0.00 39.30 1.52
3074 4822 7.444487 AGGACTGAAAGGAACACTGTATAAAAC 59.556 37.037 0.00 0.00 39.30 2.43
3075 4823 7.444487 GGACTGAAAGGAACACTGTATAAAACT 59.556 37.037 0.00 0.00 39.30 2.66
3076 4824 9.485206 GACTGAAAGGAACACTGTATAAAACTA 57.515 33.333 0.00 0.00 39.30 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.376978 CCATGAAACTGTTGATTTGAGAGTC 58.623 40.000 0.00 0.00 0.00 3.36
1 2 5.242393 CCCATGAAACTGTTGATTTGAGAGT 59.758 40.000 0.00 0.00 0.00 3.24
2 3 5.474532 TCCCATGAAACTGTTGATTTGAGAG 59.525 40.000 0.00 0.00 0.00 3.20
3 4 5.384336 TCCCATGAAACTGTTGATTTGAGA 58.616 37.500 0.00 0.00 0.00 3.27
4 5 5.706916 CTCCCATGAAACTGTTGATTTGAG 58.293 41.667 0.00 0.00 0.00 3.02
5 6 4.022068 GCTCCCATGAAACTGTTGATTTGA 60.022 41.667 0.00 0.00 0.00 2.69
6 7 4.240096 GCTCCCATGAAACTGTTGATTTG 58.760 43.478 0.00 0.00 0.00 2.32
7 8 3.259123 GGCTCCCATGAAACTGTTGATTT 59.741 43.478 0.00 0.00 0.00 2.17
8 9 2.827921 GGCTCCCATGAAACTGTTGATT 59.172 45.455 0.00 0.00 0.00 2.57
9 10 2.225091 TGGCTCCCATGAAACTGTTGAT 60.225 45.455 0.00 0.00 0.00 2.57
10 11 1.144708 TGGCTCCCATGAAACTGTTGA 59.855 47.619 0.00 0.00 0.00 3.18
11 12 1.619654 TGGCTCCCATGAAACTGTTG 58.380 50.000 0.00 0.00 0.00 3.33
12 13 2.610438 ATGGCTCCCATGAAACTGTT 57.390 45.000 0.00 0.00 43.39 3.16
57 58 3.594603 AAGTCATCACCTAGGAACACG 57.405 47.619 17.98 0.00 0.00 4.49
59 60 5.491070 CATCAAAGTCATCACCTAGGAACA 58.509 41.667 17.98 0.00 0.00 3.18
60 61 4.878397 CCATCAAAGTCATCACCTAGGAAC 59.122 45.833 17.98 5.41 0.00 3.62
71 74 4.927049 ACCAATCTCACCATCAAAGTCAT 58.073 39.130 0.00 0.00 0.00 3.06
99 110 3.131046 GGAGAACATACCCATGCAAAAGG 59.869 47.826 0.00 0.00 35.39 3.11
101 112 4.016444 GAGGAGAACATACCCATGCAAAA 58.984 43.478 0.00 0.00 35.39 2.44
108 119 2.642171 AGGTGAGGAGAACATACCCA 57.358 50.000 0.00 0.00 31.80 4.51
121 132 6.729690 ATCTAGAAGATCAAGGAAGGTGAG 57.270 41.667 0.00 0.00 25.75 3.51
180 193 8.470805 ACATCTTTGTCGTGTAGAGATTATCTT 58.529 33.333 0.00 0.00 39.64 2.40
187 200 4.982295 CACAACATCTTTGTCGTGTAGAGA 59.018 41.667 0.00 0.00 36.28 3.10
188 201 4.982295 TCACAACATCTTTGTCGTGTAGAG 59.018 41.667 0.00 0.00 40.82 2.43
195 208 6.857451 TGAATGAAATCACAACATCTTTGTCG 59.143 34.615 0.00 0.00 34.06 4.35
198 211 8.432359 CACATGAATGAAATCACAACATCTTTG 58.568 33.333 0.00 0.00 30.82 2.77
214 237 6.465439 ACTAGTAACCGATCACATGAATGA 57.535 37.500 0.00 0.00 0.00 2.57
220 243 8.044908 ACCAATAAAACTAGTAACCGATCACAT 58.955 33.333 0.00 0.00 0.00 3.21
221 244 7.388437 ACCAATAAAACTAGTAACCGATCACA 58.612 34.615 0.00 0.00 0.00 3.58
228 251 9.836076 GATCAACAACCAATAAAACTAGTAACC 57.164 33.333 0.00 0.00 0.00 2.85
293 316 8.948853 TGTGTCAGACGAATTTGATAAAATTC 57.051 30.769 15.82 15.82 42.67 2.17
296 319 7.136119 GGTTGTGTCAGACGAATTTGATAAAA 58.864 34.615 0.00 0.00 0.00 1.52
297 320 6.565060 CGGTTGTGTCAGACGAATTTGATAAA 60.565 38.462 0.00 0.00 0.00 1.40
298 321 5.107259 CGGTTGTGTCAGACGAATTTGATAA 60.107 40.000 0.00 0.00 0.00 1.75
300 323 3.186409 CGGTTGTGTCAGACGAATTTGAT 59.814 43.478 0.00 0.00 0.00 2.57
310 333 6.438259 TTTTAAATTGTCGGTTGTGTCAGA 57.562 33.333 0.00 0.00 0.00 3.27
312 335 7.009631 CACAATTTTAAATTGTCGGTTGTGTCA 59.990 33.333 27.00 0.00 39.94 3.58
313 336 7.334009 CACAATTTTAAATTGTCGGTTGTGTC 58.666 34.615 27.00 0.00 39.94 3.67
317 340 8.383619 TCAAACACAATTTTAAATTGTCGGTTG 58.616 29.630 30.41 30.41 39.94 3.77
318 341 8.384365 GTCAAACACAATTTTAAATTGTCGGTT 58.616 29.630 27.00 24.37 39.94 4.44
322 345 8.803799 ACTCGTCAAACACAATTTTAAATTGTC 58.196 29.630 27.00 16.46 39.94 3.18
323 346 8.591312 CACTCGTCAAACACAATTTTAAATTGT 58.409 29.630 24.96 24.96 42.38 2.71
325 348 7.254286 GCCACTCGTCAAACACAATTTTAAATT 60.254 33.333 0.00 0.00 0.00 1.82
336 359 1.295792 TGAAGCCACTCGTCAAACAC 58.704 50.000 0.00 0.00 30.30 3.32
392 415 6.378710 TCATACATGTCCGTCAAAACAAAA 57.621 33.333 0.00 0.00 0.00 2.44
400 423 6.901081 AGATCTATTCATACATGTCCGTCA 57.099 37.500 0.00 0.00 0.00 4.35
433 456 8.787852 TGAACATGTTATAGCACAAATACAACA 58.212 29.630 11.95 0.00 0.00 3.33
434 457 9.787532 ATGAACATGTTATAGCACAAATACAAC 57.212 29.630 11.95 0.00 0.00 3.32
453 476 3.570975 ACATGACAAGCACACATGAACAT 59.429 39.130 15.93 0.00 42.41 2.71
499 522 3.258123 ACTTTATGAAATGGTGGCCACAC 59.742 43.478 35.78 24.77 46.97 3.82
528 551 4.973168 ACTTATGTCACACCATCACACTT 58.027 39.130 0.00 0.00 0.00 3.16
544 567 8.514594 ACCTTTTGTACACATGATGAACTTATG 58.485 33.333 0.00 0.00 0.00 1.90
545 568 8.514594 CACCTTTTGTACACATGATGAACTTAT 58.485 33.333 0.00 0.00 0.00 1.73
552 575 6.748333 ATCTCACCTTTTGTACACATGATG 57.252 37.500 0.00 0.00 0.00 3.07
558 581 5.001232 TGGCTAATCTCACCTTTTGTACAC 58.999 41.667 0.00 0.00 0.00 2.90
561 584 6.486657 GCATATGGCTAATCTCACCTTTTGTA 59.513 38.462 4.56 0.00 40.25 2.41
566 589 3.668447 CGCATATGGCTAATCTCACCTT 58.332 45.455 4.56 0.00 41.67 3.50
583 606 5.163571 TGGTTGTTTGATTACATATGCGCAT 60.164 36.000 28.23 28.23 0.00 4.73
592 615 9.823647 AATGTAATGTTTGGTTGTTTGATTACA 57.176 25.926 0.00 0.00 38.49 2.41
597 620 7.978982 CCAAAATGTAATGTTTGGTTGTTTGA 58.021 30.769 6.95 0.00 45.80 2.69
713 736 6.310941 TCCAATGAATTTGAGTACTTTCCCA 58.689 36.000 0.00 0.00 37.53 4.37
716 739 8.169268 CGTACTCCAATGAATTTGAGTACTTTC 58.831 37.037 27.59 13.90 41.15 2.62
717 740 7.660208 ACGTACTCCAATGAATTTGAGTACTTT 59.340 33.333 27.59 18.97 41.15 2.66
720 743 6.963049 ACGTACTCCAATGAATTTGAGTAC 57.037 37.500 24.24 24.24 40.66 2.73
721 744 7.604549 TGTACGTACTCCAATGAATTTGAGTA 58.395 34.615 25.12 11.13 37.53 2.59
723 746 6.961359 TGTACGTACTCCAATGAATTTGAG 57.039 37.500 25.12 3.28 37.53 3.02
724 747 7.226918 TGTTTGTACGTACTCCAATGAATTTGA 59.773 33.333 25.12 0.00 37.53 2.69
726 749 7.499321 TGTTTGTACGTACTCCAATGAATTT 57.501 32.000 25.12 0.00 0.00 1.82
728 751 7.499321 TTTGTTTGTACGTACTCCAATGAAT 57.501 32.000 25.12 0.00 0.00 2.57
729 752 6.922247 TTTGTTTGTACGTACTCCAATGAA 57.078 33.333 25.12 7.69 0.00 2.57
730 753 6.922247 TTTTGTTTGTACGTACTCCAATGA 57.078 33.333 25.12 13.22 0.00 2.57
731 754 6.141685 GCTTTTTGTTTGTACGTACTCCAATG 59.858 38.462 25.12 16.27 0.00 2.82
732 755 6.203647 GCTTTTTGTTTGTACGTACTCCAAT 58.796 36.000 25.12 0.00 0.00 3.16
735 758 4.206088 CGCTTTTTGTTTGTACGTACTCC 58.794 43.478 25.12 13.56 0.00 3.85
736 759 4.025813 TCCGCTTTTTGTTTGTACGTACTC 60.026 41.667 25.12 15.73 0.00 2.59
737 760 3.870419 TCCGCTTTTTGTTTGTACGTACT 59.130 39.130 25.12 0.00 0.00 2.73
738 761 4.194381 TCCGCTTTTTGTTTGTACGTAC 57.806 40.909 18.90 18.90 0.00 3.67
739 762 4.510711 TCATCCGCTTTTTGTTTGTACGTA 59.489 37.500 0.00 0.00 0.00 3.57
748 931 5.452078 TCATTTCTTCATCCGCTTTTTGT 57.548 34.783 0.00 0.00 0.00 2.83
753 936 5.964958 TTTCTTCATTTCTTCATCCGCTT 57.035 34.783 0.00 0.00 0.00 4.68
755 938 6.088616 CAGTTTTTCTTCATTTCTTCATCCGC 59.911 38.462 0.00 0.00 0.00 5.54
757 940 9.533253 TTTCAGTTTTTCTTCATTTCTTCATCC 57.467 29.630 0.00 0.00 0.00 3.51
779 2438 5.048921 TGCGTGTTTTTATATCGGGTTTTCA 60.049 36.000 0.00 0.00 0.00 2.69
815 2474 1.000060 TCCGGGTAGTGTTCGAGTTTG 60.000 52.381 0.00 0.00 0.00 2.93
822 2481 2.582978 GGCCTCCGGGTAGTGTTC 59.417 66.667 0.00 0.00 34.45 3.18
833 2492 4.699522 AAGCGTGTTCCGGCCTCC 62.700 66.667 0.00 0.00 36.94 4.30
837 2496 3.774702 GACGAAGCGTGTTCCGGC 61.775 66.667 0.00 0.00 41.37 6.13
838 2497 3.110178 GGACGAAGCGTGTTCCGG 61.110 66.667 0.00 0.00 41.37 5.14
854 2542 4.360951 TTTATTCCCTACAATAGCCGGG 57.639 45.455 2.18 0.00 38.07 5.73
982 2675 1.548357 ATGTCGTCCTTGCTCCTGCT 61.548 55.000 0.00 0.00 40.48 4.24
1091 2785 0.815213 CACCAGATACACATGGCGGG 60.815 60.000 0.00 0.00 40.45 6.13
1194 2891 2.588314 GGATCTGGCAGCTGCTCG 60.588 66.667 35.82 25.99 41.70 5.03
1519 3216 1.372997 CGTCTGGTGACTGGAACGG 60.373 63.158 0.00 0.00 40.86 4.44
1674 3371 2.621407 GGCATCCAGGTCCTGATCAAAA 60.621 50.000 21.23 0.00 32.44 2.44
1898 3602 4.227134 CCTGGTCATCGGCCGAGG 62.227 72.222 32.82 32.82 0.00 4.63
1951 3655 0.877071 TGGAGACCGAACGTAGTCAC 59.123 55.000 13.73 8.51 45.00 3.67
2104 3808 3.617045 GCATTTCCAGCACAATTAAGCCA 60.617 43.478 0.00 0.00 0.00 4.75
2126 3830 5.936956 GGATTCTCAGCCCAAATCATAGTAG 59.063 44.000 0.00 0.00 32.27 2.57
2139 3846 3.882288 GAGGAAAATCTGGATTCTCAGCC 59.118 47.826 0.00 0.00 34.91 4.85
2190 3897 6.487668 TGCAAATGTGAGGATATATTCAGTGG 59.512 38.462 0.00 0.00 0.00 4.00
2541 4261 7.042523 GCAACATCTCACAAAAGCAATTAGTTT 60.043 33.333 0.00 0.00 0.00 2.66
2613 4333 7.174253 TGTTTCTGTTAAGTGTCAGTTTCAGTT 59.826 33.333 17.22 0.00 33.89 3.16
2632 4352 0.318445 GGCTGCTGCTTGTGTTTCTG 60.318 55.000 15.64 0.00 39.59 3.02
2643 4363 0.401738 TATGATTAGGGGGCTGCTGC 59.598 55.000 7.10 7.10 38.76 5.25
2657 4377 7.821359 CGTGTAGATTCCCTCATGAATTATGAT 59.179 37.037 0.00 0.00 44.48 2.45
2667 4387 4.383118 CCTGTTTCGTGTAGATTCCCTCAT 60.383 45.833 0.00 0.00 0.00 2.90
2670 4390 2.354805 GCCTGTTTCGTGTAGATTCCCT 60.355 50.000 0.00 0.00 0.00 4.20
2671 4391 2.007608 GCCTGTTTCGTGTAGATTCCC 58.992 52.381 0.00 0.00 0.00 3.97
2707 4427 2.000447 GAGACGGGTCTTCGGATTTTG 59.000 52.381 2.39 0.00 40.61 2.44
2714 4434 2.022195 TGATTAGGAGACGGGTCTTCG 58.978 52.381 2.39 0.00 40.19 3.79
2718 4438 1.536284 CGCTTGATTAGGAGACGGGTC 60.536 57.143 0.00 0.00 0.00 4.46
2785 4505 2.331265 GCACGGGCTTCTCAGTTTT 58.669 52.632 0.00 0.00 36.96 2.43
2797 4517 4.693566 TCTTAGTTTGTATTTCAGCACGGG 59.306 41.667 0.00 0.00 0.00 5.28
2799 4519 7.323656 CCTTTTCTTAGTTTGTATTTCAGCACG 59.676 37.037 0.00 0.00 0.00 5.34
2810 4530 5.751586 TCACTGTCCCTTTTCTTAGTTTGT 58.248 37.500 0.00 0.00 0.00 2.83
2823 4543 3.391296 TCTTGCTTTAGTTCACTGTCCCT 59.609 43.478 0.00 0.00 0.00 4.20
2831 4551 6.715464 CGTTTTCTCTTCTTGCTTTAGTTCA 58.285 36.000 0.00 0.00 0.00 3.18
2832 4552 5.621634 GCGTTTTCTCTTCTTGCTTTAGTTC 59.378 40.000 0.00 0.00 0.00 3.01
2833 4553 5.297029 AGCGTTTTCTCTTCTTGCTTTAGTT 59.703 36.000 0.00 0.00 0.00 2.24
2834 4554 4.816925 AGCGTTTTCTCTTCTTGCTTTAGT 59.183 37.500 0.00 0.00 0.00 2.24
2835 4555 5.050091 TCAGCGTTTTCTCTTCTTGCTTTAG 60.050 40.000 0.00 0.00 0.00 1.85
2836 4556 4.814234 TCAGCGTTTTCTCTTCTTGCTTTA 59.186 37.500 0.00 0.00 0.00 1.85
2837 4557 3.627577 TCAGCGTTTTCTCTTCTTGCTTT 59.372 39.130 0.00 0.00 0.00 3.51
2855 4603 7.276438 AGTTTCAGTTTTCATTGTTTCTTCAGC 59.724 33.333 0.00 0.00 0.00 4.26
2873 4621 5.954752 TCATCATCCTAGTCTCAGTTTCAGT 59.045 40.000 0.00 0.00 0.00 3.41
2878 4626 4.713814 TGCTTCATCATCCTAGTCTCAGTT 59.286 41.667 0.00 0.00 0.00 3.16
2883 4631 5.660417 TCTTCTTGCTTCATCATCCTAGTCT 59.340 40.000 0.00 0.00 0.00 3.24
2946 4694 5.761205 TCTTAGTGTTCCTCTCAGCTATCT 58.239 41.667 0.00 0.00 0.00 1.98
2987 4735 3.648067 AGTGTTCCATTCAGTCCTCTCAA 59.352 43.478 0.00 0.00 0.00 3.02
3000 4748 2.975489 AGTGTTCCTCTCAGTGTTCCAT 59.025 45.455 0.00 0.00 0.00 3.41
3001 4749 2.103094 CAGTGTTCCTCTCAGTGTTCCA 59.897 50.000 0.00 0.00 33.23 3.53
3002 4750 2.365617 TCAGTGTTCCTCTCAGTGTTCC 59.634 50.000 0.00 0.00 37.47 3.62
3003 4751 3.319405 TCTCAGTGTTCCTCTCAGTGTTC 59.681 47.826 0.00 0.00 37.47 3.18
3004 4752 3.300388 TCTCAGTGTTCCTCTCAGTGTT 58.700 45.455 0.00 0.00 37.47 3.32
3005 4753 2.890311 CTCTCAGTGTTCCTCTCAGTGT 59.110 50.000 0.00 0.00 37.47 3.55
3006 4754 2.230992 CCTCTCAGTGTTCCTCTCAGTG 59.769 54.545 0.00 0.00 37.52 3.66
3007 4755 2.109128 TCCTCTCAGTGTTCCTCTCAGT 59.891 50.000 0.00 0.00 0.00 3.41
3008 4756 2.801483 TCCTCTCAGTGTTCCTCTCAG 58.199 52.381 0.00 0.00 0.00 3.35
3009 4757 2.980246 TCCTCTCAGTGTTCCTCTCA 57.020 50.000 0.00 0.00 0.00 3.27
3010 4758 4.221703 TCATTTCCTCTCAGTGTTCCTCTC 59.778 45.833 0.00 0.00 0.00 3.20
3011 4759 4.163427 TCATTTCCTCTCAGTGTTCCTCT 58.837 43.478 0.00 0.00 0.00 3.69
3012 4760 4.543590 TCATTTCCTCTCAGTGTTCCTC 57.456 45.455 0.00 0.00 0.00 3.71
3013 4761 4.982241 TTCATTTCCTCTCAGTGTTCCT 57.018 40.909 0.00 0.00 0.00 3.36
3014 4762 6.881602 AGTATTTCATTTCCTCTCAGTGTTCC 59.118 38.462 0.00 0.00 0.00 3.62
3015 4763 7.604164 TCAGTATTTCATTTCCTCTCAGTGTTC 59.396 37.037 0.00 0.00 0.00 3.18
3016 4764 7.453393 TCAGTATTTCATTTCCTCTCAGTGTT 58.547 34.615 0.00 0.00 0.00 3.32
3017 4765 7.009179 TCAGTATTTCATTTCCTCTCAGTGT 57.991 36.000 0.00 0.00 0.00 3.55
3018 4766 7.986320 AGATCAGTATTTCATTTCCTCTCAGTG 59.014 37.037 0.00 0.00 0.00 3.66
3019 4767 7.986320 CAGATCAGTATTTCATTTCCTCTCAGT 59.014 37.037 0.00 0.00 0.00 3.41
3020 4768 8.202811 TCAGATCAGTATTTCATTTCCTCTCAG 58.797 37.037 0.00 0.00 0.00 3.35
3021 4769 8.082672 TCAGATCAGTATTTCATTTCCTCTCA 57.917 34.615 0.00 0.00 0.00 3.27
3022 4770 8.420222 TCTCAGATCAGTATTTCATTTCCTCTC 58.580 37.037 0.00 0.00 0.00 3.20
3023 4771 8.316497 TCTCAGATCAGTATTTCATTTCCTCT 57.684 34.615 0.00 0.00 0.00 3.69
3024 4772 7.656948 CCTCTCAGATCAGTATTTCATTTCCTC 59.343 40.741 0.00 0.00 0.00 3.71
3025 4773 7.346698 TCCTCTCAGATCAGTATTTCATTTCCT 59.653 37.037 0.00 0.00 0.00 3.36
3026 4774 7.440856 GTCCTCTCAGATCAGTATTTCATTTCC 59.559 40.741 0.00 0.00 0.00 3.13
3027 4775 8.203485 AGTCCTCTCAGATCAGTATTTCATTTC 58.797 37.037 0.00 0.00 0.00 2.17
3028 4776 7.986320 CAGTCCTCTCAGATCAGTATTTCATTT 59.014 37.037 0.00 0.00 0.00 2.32
3029 4777 7.344093 TCAGTCCTCTCAGATCAGTATTTCATT 59.656 37.037 0.00 0.00 0.00 2.57
3030 4778 6.838090 TCAGTCCTCTCAGATCAGTATTTCAT 59.162 38.462 0.00 0.00 0.00 2.57
3031 4779 6.190587 TCAGTCCTCTCAGATCAGTATTTCA 58.809 40.000 0.00 0.00 0.00 2.69
3032 4780 6.707440 TCAGTCCTCTCAGATCAGTATTTC 57.293 41.667 0.00 0.00 0.00 2.17
3033 4781 7.364585 CCTTTCAGTCCTCTCAGATCAGTATTT 60.365 40.741 0.00 0.00 0.00 1.40
3034 4782 6.098124 CCTTTCAGTCCTCTCAGATCAGTATT 59.902 42.308 0.00 0.00 0.00 1.89
3035 4783 5.598005 CCTTTCAGTCCTCTCAGATCAGTAT 59.402 44.000 0.00 0.00 0.00 2.12
3036 4784 4.952957 CCTTTCAGTCCTCTCAGATCAGTA 59.047 45.833 0.00 0.00 0.00 2.74
3037 4785 3.768757 CCTTTCAGTCCTCTCAGATCAGT 59.231 47.826 0.00 0.00 0.00 3.41
3038 4786 4.022603 TCCTTTCAGTCCTCTCAGATCAG 58.977 47.826 0.00 0.00 0.00 2.90
3039 4787 4.053009 TCCTTTCAGTCCTCTCAGATCA 57.947 45.455 0.00 0.00 0.00 2.92
3040 4788 4.221703 TGTTCCTTTCAGTCCTCTCAGATC 59.778 45.833 0.00 0.00 0.00 2.75
3041 4789 4.020662 GTGTTCCTTTCAGTCCTCTCAGAT 60.021 45.833 0.00 0.00 0.00 2.90
3042 4790 3.322254 GTGTTCCTTTCAGTCCTCTCAGA 59.678 47.826 0.00 0.00 0.00 3.27
3043 4791 3.323403 AGTGTTCCTTTCAGTCCTCTCAG 59.677 47.826 0.00 0.00 0.00 3.35
3044 4792 3.070159 CAGTGTTCCTTTCAGTCCTCTCA 59.930 47.826 0.00 0.00 0.00 3.27
3045 4793 3.070302 ACAGTGTTCCTTTCAGTCCTCTC 59.930 47.826 0.00 0.00 0.00 3.20
3046 4794 3.041946 ACAGTGTTCCTTTCAGTCCTCT 58.958 45.455 0.00 0.00 0.00 3.69
3047 4795 3.477210 ACAGTGTTCCTTTCAGTCCTC 57.523 47.619 0.00 0.00 0.00 3.71
3048 4796 6.681729 TTATACAGTGTTCCTTTCAGTCCT 57.318 37.500 0.00 0.00 0.00 3.85
3049 4797 7.444487 AGTTTTATACAGTGTTCCTTTCAGTCC 59.556 37.037 0.00 0.00 0.00 3.85
3050 4798 8.379457 AGTTTTATACAGTGTTCCTTTCAGTC 57.621 34.615 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.