Multiple sequence alignment - TraesCS7A01G399200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G399200 chr7A 100.000 2744 0 0 1 2744 579340895 579338152 0.000000e+00 5068.0
1 TraesCS7A01G399200 chr7A 84.123 359 44 10 1802 2154 579505771 579506122 4.380000e-88 335.0
2 TraesCS7A01G399200 chr7A 78.287 502 57 29 11 493 579619100 579619568 2.690000e-70 276.0
3 TraesCS7A01G399200 chr7A 80.278 360 50 11 1801 2154 579620461 579620805 4.540000e-63 252.0
4 TraesCS7A01G399200 chr7A 78.814 354 46 18 11 361 579499628 579499955 7.700000e-51 211.0
5 TraesCS7A01G399200 chr7A 85.542 83 5 6 2294 2374 579620992 579621069 2.270000e-11 80.5
6 TraesCS7A01G399200 chr7A 92.593 54 1 2 609 661 81135105 81135054 1.050000e-09 75.0
7 TraesCS7A01G399200 chr7B 93.425 1825 62 25 1 1783 537165266 537167074 0.000000e+00 2652.0
8 TraesCS7A01G399200 chr7B 87.771 507 37 13 2006 2488 537167081 537167586 1.100000e-158 569.0
9 TraesCS7A01G399200 chr7B 75.958 1044 140 62 1756 2744 536994335 536995322 4.200000e-118 435.0
10 TraesCS7A01G399200 chr7B 95.312 256 12 0 2489 2744 537167617 537167872 9.150000e-110 407.0
11 TraesCS7A01G399200 chr7B 82.174 460 63 12 167 614 537224971 537225423 7.170000e-101 377.0
12 TraesCS7A01G399200 chr7B 82.386 352 49 8 1801 2146 537226104 537226448 7.430000e-76 294.0
13 TraesCS7A01G399200 chr7D 82.955 352 47 8 1801 2146 508885734 508886078 3.430000e-79 305.0
14 TraesCS7A01G399200 chr1D 90.141 71 3 3 622 689 485110610 485110541 3.760000e-14 89.8
15 TraesCS7A01G399200 chr5D 89.706 68 1 1 622 689 56125640 56125701 6.300000e-12 82.4
16 TraesCS7A01G399200 chr2A 88.060 67 4 4 623 689 675304129 675304191 2.930000e-10 76.8
17 TraesCS7A01G399200 chr6D 89.831 59 4 1 621 677 27037447 27037389 1.050000e-09 75.0
18 TraesCS7A01G399200 chr6D 86.885 61 5 3 623 683 401182239 401182182 6.340000e-07 65.8
19 TraesCS7A01G399200 chr2B 83.333 78 10 3 615 690 745861384 745861460 4.900000e-08 69.4
20 TraesCS7A01G399200 chr2D 82.051 78 10 4 615 690 610495884 610495959 2.280000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G399200 chr7A 579338152 579340895 2743 True 5068.000000 5068 100.000000 1 2744 1 chr7A.!!$R2 2743
1 TraesCS7A01G399200 chr7A 579619100 579621069 1969 False 202.833333 276 81.369000 11 2374 3 chr7A.!!$F3 2363
2 TraesCS7A01G399200 chr7B 537165266 537167872 2606 False 1209.333333 2652 92.169333 1 2744 3 chr7B.!!$F2 2743
3 TraesCS7A01G399200 chr7B 536994335 536995322 987 False 435.000000 435 75.958000 1756 2744 1 chr7B.!!$F1 988
4 TraesCS7A01G399200 chr7B 537224971 537226448 1477 False 335.500000 377 82.280000 167 2146 2 chr7B.!!$F3 1979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 999 0.109342 GGGTGCTGTATATGCAGGCT 59.891 55.0 20.59 0.0 41.41 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 2717 0.032678 CTGTACTGCTATGGAGGCCG 59.967 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 3.923017 ACAGTCAAGCTAAATTGCACC 57.077 42.857 0.00 0.00 34.99 5.01
372 394 9.452287 GGGTATGTGTTAGTTGAATACCTTTAA 57.548 33.333 9.38 0.00 41.59 1.52
462 492 9.067986 AGAAAGAAGAAACCAACTTAATACCTG 57.932 33.333 0.00 0.00 0.00 4.00
692 755 6.041979 ACATTTGTTTGCAGAGGGAGTAAAAT 59.958 34.615 0.00 0.00 0.00 1.82
911 989 1.490490 GATGGAATGAGGGGTGCTGTA 59.510 52.381 0.00 0.00 0.00 2.74
921 999 0.109342 GGGTGCTGTATATGCAGGCT 59.891 55.000 20.59 0.00 41.41 4.58
953 1032 0.322008 AACAGCTGGGCTTCTGCTAC 60.322 55.000 19.93 0.00 46.77 3.58
977 1056 4.816925 GTGAACAATCCTTCTATAGGTGCC 59.183 45.833 0.00 0.00 45.03 5.01
1027 1106 0.039618 GGCAACCCAGAAAGGATGGA 59.960 55.000 0.00 0.00 40.51 3.41
1184 1324 5.119694 GGAATTTCAGATTCGGTAGCTTCT 58.880 41.667 0.00 0.00 0.00 2.85
1190 1330 1.134560 GATTCGGTAGCTTCTCCGTGT 59.865 52.381 18.95 11.77 45.88 4.49
1210 1350 2.827642 GCTCACTCTGCCCATGCC 60.828 66.667 0.00 0.00 36.33 4.40
1252 1401 5.418676 CAAAGCTGTTTTCCTTTTCTTCCA 58.581 37.500 0.00 0.00 0.00 3.53
1457 1610 6.365970 ACATCTAGTTCAGTCTCCACAAAT 57.634 37.500 0.00 0.00 0.00 2.32
1586 1739 3.213206 ACAGTTTCCATCTGCAGTTCA 57.787 42.857 14.67 0.00 36.50 3.18
1617 1770 2.113986 GCAGGTGCAGGTGACCTT 59.886 61.111 0.00 0.00 41.31 3.50
1624 1777 1.537202 GTGCAGGTGACCTTGTTGATC 59.463 52.381 0.00 0.00 0.00 2.92
1648 1801 2.428544 TGTAACCATAGCCGCCATTT 57.571 45.000 0.00 0.00 0.00 2.32
1650 1803 2.092646 TGTAACCATAGCCGCCATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
1662 1815 1.133356 GCCATTTCTCCCCAGCCTTAT 60.133 52.381 0.00 0.00 0.00 1.73
1669 1822 2.818169 CCCCAGCCTTATGCCGCTA 61.818 63.158 0.00 0.00 42.71 4.26
1671 1824 1.598130 CCAGCCTTATGCCGCTACC 60.598 63.158 0.00 0.00 42.71 3.18
1681 1834 2.098831 GCCGCTACCGAACCTGAAC 61.099 63.158 0.00 0.00 36.29 3.18
1686 1839 2.271800 GCTACCGAACCTGAACTCATG 58.728 52.381 0.00 0.00 0.00 3.07
1687 1840 2.893637 CTACCGAACCTGAACTCATGG 58.106 52.381 0.00 0.00 0.00 3.66
1719 1879 0.977627 TGATCACTGATCCACCGGCT 60.978 55.000 15.19 0.00 38.20 5.52
1724 1884 0.324368 ACTGATCCACCGGCTAGTGA 60.324 55.000 0.00 0.00 40.34 3.41
1753 1913 9.575868 CTACTGGAATTTACTAGAGTCCTCATA 57.424 37.037 0.00 0.00 0.00 2.15
1788 1948 9.046296 GTTATCGACTTGTCATCATCCTTTTAT 57.954 33.333 0.00 0.00 0.00 1.40
1789 1949 9.613428 TTATCGACTTGTCATCATCCTTTTATT 57.387 29.630 0.00 0.00 0.00 1.40
1790 1950 7.539712 TCGACTTGTCATCATCCTTTTATTC 57.460 36.000 1.59 0.00 0.00 1.75
1791 1951 7.102993 TCGACTTGTCATCATCCTTTTATTCA 58.897 34.615 1.59 0.00 0.00 2.57
1792 1952 7.770433 TCGACTTGTCATCATCCTTTTATTCAT 59.230 33.333 1.59 0.00 0.00 2.57
1793 1953 8.066595 CGACTTGTCATCATCCTTTTATTCATC 58.933 37.037 1.59 0.00 0.00 2.92
1794 1954 9.118300 GACTTGTCATCATCCTTTTATTCATCT 57.882 33.333 0.00 0.00 0.00 2.90
1824 1984 8.503428 AGTATATCCATCAGTTTGAGGAGATT 57.497 34.615 0.00 0.00 32.25 2.40
1834 1994 8.704849 TCAGTTTGAGGAGATTTTGGAATTTA 57.295 30.769 0.00 0.00 0.00 1.40
1846 2006 8.826765 AGATTTTGGAATTTACTAGAGGACTGA 58.173 33.333 0.00 0.00 0.00 3.41
1857 2017 6.578163 ACTAGAGGACTGAAACTTCTGTAC 57.422 41.667 0.00 4.04 39.10 2.90
1860 2020 3.991121 GAGGACTGAAACTTCTGTACTGC 59.009 47.826 16.39 7.01 46.38 4.40
1868 2028 3.728076 ACTTCTGTACTGCGTTTCTGA 57.272 42.857 0.00 0.00 0.00 3.27
1880 2040 4.637276 TGCGTTTCTGAGGAAGTTGATAA 58.363 39.130 0.00 0.00 32.61 1.75
1957 2122 8.567285 AATGAAGTACATTTCTTAAGTCCCTG 57.433 34.615 1.63 0.00 45.60 4.45
1971 2136 2.912956 AGTCCCTGGATTAAGCAACTCA 59.087 45.455 0.00 0.00 0.00 3.41
1972 2137 3.330701 AGTCCCTGGATTAAGCAACTCAA 59.669 43.478 0.00 0.00 0.00 3.02
1973 2138 3.440522 GTCCCTGGATTAAGCAACTCAAC 59.559 47.826 0.00 0.00 0.00 3.18
1978 2156 4.839121 TGGATTAAGCAACTCAACCGTAT 58.161 39.130 0.00 0.00 0.00 3.06
1979 2157 4.634004 TGGATTAAGCAACTCAACCGTATG 59.366 41.667 0.00 0.00 0.00 2.39
1987 2165 4.143179 GCAACTCAACCGTATGTACTGTTC 60.143 45.833 0.00 0.00 32.47 3.18
2055 2234 1.202510 GCAGGCGATCTCACTGAATCT 60.203 52.381 11.02 0.00 34.21 2.40
2075 2254 5.222079 TCTGAATGTAACTACAGTTGGCA 57.778 39.130 4.86 4.64 39.92 4.92
2079 2258 7.230510 TCTGAATGTAACTACAGTTGGCAAATT 59.769 33.333 0.00 0.00 39.92 1.82
2101 2280 0.746659 GCCTGTGCCATTGGGTTATC 59.253 55.000 4.53 0.00 36.17 1.75
2171 2350 2.244000 GCAACCTTGCGAGTGCTAA 58.756 52.632 8.89 0.00 45.11 3.09
2172 2351 0.804989 GCAACCTTGCGAGTGCTAAT 59.195 50.000 8.89 0.00 45.11 1.73
2173 2352 1.202076 GCAACCTTGCGAGTGCTAATC 60.202 52.381 8.89 0.00 45.11 1.75
2174 2353 2.350522 CAACCTTGCGAGTGCTAATCT 58.649 47.619 0.00 0.00 43.34 2.40
2211 2390 3.751479 AAGCTTTGGTTGATTTGGGTC 57.249 42.857 0.00 0.00 0.00 4.46
2216 2423 4.542735 CTTTGGTTGATTTGGGTCGTAAC 58.457 43.478 0.00 0.00 0.00 2.50
2250 2457 2.217750 CAGATTGGTTGTGTTCGTCCA 58.782 47.619 0.00 0.00 0.00 4.02
2257 2464 0.874175 TTGTGTTCGTCCACTCTGCG 60.874 55.000 8.30 0.00 36.30 5.18
2279 2486 4.331443 CGGATGATTGGTTGTTCGAACATA 59.669 41.667 30.10 18.17 38.95 2.29
2281 2488 6.201997 CGGATGATTGGTTGTTCGAACATATA 59.798 38.462 30.10 14.20 38.95 0.86
2337 2645 0.744414 CGGTCGAAGTCCAATGCCAT 60.744 55.000 0.00 0.00 34.76 4.40
2374 2682 5.891551 ACTTTCAATCAAAACTAGGGTGTGT 59.108 36.000 0.00 0.00 0.00 3.72
2419 2727 2.569853 TGAAGAAGAAACGGCCTCCATA 59.430 45.455 0.00 0.00 0.00 2.74
2420 2728 2.990066 AGAAGAAACGGCCTCCATAG 57.010 50.000 0.00 0.00 0.00 2.23
2428 2736 0.032678 CGGCCTCCATAGCAGTACAG 59.967 60.000 0.00 0.00 0.00 2.74
2431 2739 2.698797 GGCCTCCATAGCAGTACAGTTA 59.301 50.000 0.00 0.00 0.00 2.24
2434 2742 4.202264 GCCTCCATAGCAGTACAGTTACAT 60.202 45.833 0.00 0.00 0.00 2.29
2451 2759 7.387948 ACAGTTACATGGCTCAGTAAACTAAAG 59.612 37.037 0.00 0.00 32.55 1.85
2533 2876 2.099427 GTCGGTAGAACCCATCTCTCAC 59.901 54.545 0.00 0.00 39.71 3.51
2549 2892 7.330454 CCATCTCTCACATCGACCAAATTATAG 59.670 40.741 0.00 0.00 0.00 1.31
2559 2902 7.459394 TCGACCAAATTATAGTGAATCGTTC 57.541 36.000 0.00 0.00 0.00 3.95
2563 2906 9.438291 GACCAAATTATAGTGAATCGTTCATTG 57.562 33.333 4.21 3.66 42.47 2.82
2644 2991 5.065474 TGTTTACTCTCCAAACCAAACTTCG 59.935 40.000 0.00 0.00 35.46 3.79
2662 3009 9.180678 CAAACTTCGCTTAACATATCAGTTTTT 57.819 29.630 0.00 0.00 32.26 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 6.928520 ACTCAGAAAATTTGCATTCCCTAAG 58.071 36.000 0.00 0.00 0.00 2.18
324 346 7.538575 ACCCATCTGATTATTTTCTTGTTTCG 58.461 34.615 0.00 0.00 0.00 3.46
462 492 2.229784 GCATTACAGGCTTATGGCATCC 59.770 50.000 1.65 0.00 44.01 3.51
581 644 1.100510 TGTCGGGTTCCACTATCTCG 58.899 55.000 0.00 0.00 0.00 4.04
857 929 7.278203 GGTACAAAAGGCTACACTAAGAAGATC 59.722 40.741 0.00 0.00 0.00 2.75
860 932 5.347907 CGGTACAAAAGGCTACACTAAGAAG 59.652 44.000 0.00 0.00 0.00 2.85
861 933 5.010922 TCGGTACAAAAGGCTACACTAAGAA 59.989 40.000 0.00 0.00 0.00 2.52
863 935 4.813027 TCGGTACAAAAGGCTACACTAAG 58.187 43.478 0.00 0.00 0.00 2.18
864 936 4.870123 TCGGTACAAAAGGCTACACTAA 57.130 40.909 0.00 0.00 0.00 2.24
911 989 3.326588 TCCGGTGTAATAAGCCTGCATAT 59.673 43.478 0.00 0.00 0.00 1.78
921 999 3.340034 CCAGCTGTTTCCGGTGTAATAA 58.660 45.455 13.81 0.00 0.00 1.40
977 1056 4.274214 TGCTGATCTTGTTCTTGTTCAGTG 59.726 41.667 0.00 0.00 34.38 3.66
1027 1106 5.421056 AGAGAATTTGCATCATGGATTGTGT 59.579 36.000 0.00 0.00 0.00 3.72
1097 1180 6.963242 CACGTCATATGAATGTTCTTCCAAAG 59.037 38.462 7.07 0.00 34.50 2.77
1184 1324 1.873863 CAGAGTGAGCGTACACGGA 59.126 57.895 3.67 0.00 44.35 4.69
1190 1330 1.517361 CATGGGCAGAGTGAGCGTA 59.483 57.895 0.00 0.00 0.00 4.42
1210 1350 0.801251 GGCTGTGAAGCAAGCAGTAG 59.199 55.000 0.00 0.00 36.33 2.57
1252 1401 4.828939 TCATTTTCTGACTTGTTGCCTCAT 59.171 37.500 0.00 0.00 0.00 2.90
1465 1618 5.571285 ACTCCATTTCTTTTTAGAGGACCC 58.429 41.667 0.00 0.00 0.00 4.46
1586 1739 1.302285 CCTGCAGAATCAGCCAGGT 59.698 57.895 17.39 0.00 32.87 4.00
1614 1767 4.006989 TGGTTACATTCGGATCAACAAGG 58.993 43.478 0.00 0.00 0.00 3.61
1615 1768 5.818136 ATGGTTACATTCGGATCAACAAG 57.182 39.130 0.00 0.00 32.00 3.16
1617 1770 4.814234 GCTATGGTTACATTCGGATCAACA 59.186 41.667 0.00 0.00 38.53 3.33
1624 1777 0.865769 GCGGCTATGGTTACATTCGG 59.134 55.000 0.00 0.00 38.53 4.30
1648 1801 2.443394 CGGCATAAGGCTGGGGAGA 61.443 63.158 0.00 0.00 45.56 3.71
1662 1815 2.575893 TTCAGGTTCGGTAGCGGCA 61.576 57.895 15.23 0.00 0.00 5.69
1669 1822 1.276421 CTCCATGAGTTCAGGTTCGGT 59.724 52.381 0.00 0.00 0.00 4.69
1671 1824 1.363744 GCTCCATGAGTTCAGGTTCG 58.636 55.000 0.00 0.00 31.39 3.95
1681 1834 1.227764 CCATGACGGGCTCCATGAG 60.228 63.158 4.53 0.00 41.88 2.90
1686 1839 1.227674 GATCACCATGACGGGCTCC 60.228 63.158 0.00 0.00 40.22 4.70
1687 1840 0.811616 GTGATCACCATGACGGGCTC 60.812 60.000 15.31 0.00 40.22 4.70
1719 1879 9.175312 CTCTAGTAAATTCCAGTAGTGTCACTA 57.825 37.037 8.70 8.70 0.00 2.74
1724 1884 7.183460 AGGACTCTAGTAAATTCCAGTAGTGT 58.817 38.462 0.00 8.32 31.57 3.55
1753 1913 5.965922 TGACAAGTCGATAACACTCATCAT 58.034 37.500 0.00 0.00 0.00 2.45
1768 1928 9.118300 AGATGAATAAAAGGATGATGACAAGTC 57.882 33.333 0.00 0.00 0.00 3.01
1794 1954 9.877222 TCCTCAAACTGATGGATATACTAAGTA 57.123 33.333 0.00 0.00 0.00 2.24
1795 1955 8.783660 TCCTCAAACTGATGGATATACTAAGT 57.216 34.615 0.00 0.00 0.00 2.24
1796 1956 9.083422 TCTCCTCAAACTGATGGATATACTAAG 57.917 37.037 0.00 0.00 0.00 2.18
1798 1958 9.607333 AATCTCCTCAAACTGATGGATATACTA 57.393 33.333 0.00 0.00 0.00 1.82
1799 1959 8.503428 AATCTCCTCAAACTGATGGATATACT 57.497 34.615 0.00 0.00 0.00 2.12
1800 1960 9.566432 AAAATCTCCTCAAACTGATGGATATAC 57.434 33.333 0.00 0.00 0.00 1.47
1805 1965 5.012239 CCAAAATCTCCTCAAACTGATGGA 58.988 41.667 0.00 0.00 0.00 3.41
1806 1966 5.012239 TCCAAAATCTCCTCAAACTGATGG 58.988 41.667 0.00 0.00 0.00 3.51
1807 1967 6.579666 TTCCAAAATCTCCTCAAACTGATG 57.420 37.500 0.00 0.00 0.00 3.07
1808 1968 7.787623 AATTCCAAAATCTCCTCAAACTGAT 57.212 32.000 0.00 0.00 0.00 2.90
1809 1969 7.601705 AAATTCCAAAATCTCCTCAAACTGA 57.398 32.000 0.00 0.00 0.00 3.41
1810 1970 8.579863 AGTAAATTCCAAAATCTCCTCAAACTG 58.420 33.333 0.00 0.00 0.00 3.16
1811 1971 8.712228 AGTAAATTCCAAAATCTCCTCAAACT 57.288 30.769 0.00 0.00 0.00 2.66
1824 1984 8.437575 AGTTTCAGTCCTCTAGTAAATTCCAAA 58.562 33.333 0.00 0.00 0.00 3.28
1834 1994 6.207810 CAGTACAGAAGTTTCAGTCCTCTAGT 59.792 42.308 0.00 0.00 0.00 2.57
1846 2006 4.439057 TCAGAAACGCAGTACAGAAGTTT 58.561 39.130 10.44 10.44 45.00 2.66
1857 2017 2.483876 TCAACTTCCTCAGAAACGCAG 58.516 47.619 0.00 0.00 0.00 5.18
1860 2020 5.179368 TGCTTTATCAACTTCCTCAGAAACG 59.821 40.000 0.00 0.00 0.00 3.60
1868 2028 7.309805 GGGTAAATGTTGCTTTATCAACTTCCT 60.310 37.037 7.93 0.00 44.83 3.36
1880 2040 5.705905 GTGAAGACTAGGGTAAATGTTGCTT 59.294 40.000 0.00 0.00 0.00 3.91
1893 2055 4.020218 TGGAGTCCATTTGTGAAGACTAGG 60.020 45.833 8.12 0.00 39.62 3.02
1895 2057 4.020218 CCTGGAGTCCATTTGTGAAGACTA 60.020 45.833 13.56 0.00 39.62 2.59
1955 2120 3.074412 ACGGTTGAGTTGCTTAATCCAG 58.926 45.455 0.00 0.00 0.00 3.86
1957 2122 4.634443 ACATACGGTTGAGTTGCTTAATCC 59.366 41.667 0.00 0.00 0.00 3.01
1971 2136 1.273048 TGCCGAACAGTACATACGGTT 59.727 47.619 17.13 7.20 44.97 4.44
1972 2137 0.889994 TGCCGAACAGTACATACGGT 59.110 50.000 17.13 0.00 44.48 4.83
1973 2138 1.999048 TTGCCGAACAGTACATACGG 58.001 50.000 13.55 13.55 45.26 4.02
1978 2156 7.872881 TGTAAATAAAATTGCCGAACAGTACA 58.127 30.769 0.00 0.00 0.00 2.90
1979 2157 8.730970 TTGTAAATAAAATTGCCGAACAGTAC 57.269 30.769 0.00 0.00 0.00 2.73
1987 2165 8.877779 TGATGGAAATTGTAAATAAAATTGCCG 58.122 29.630 8.10 0.00 42.39 5.69
2055 2234 6.892658 ATTTGCCAACTGTAGTTACATTCA 57.107 33.333 0.00 0.00 36.32 2.57
2101 2280 4.643784 ACAACTTCCCTAGATACAGGTACG 59.356 45.833 0.00 0.00 33.44 3.67
2155 2334 2.770164 AGATTAGCACTCGCAAGGTT 57.230 45.000 0.00 0.00 42.27 3.50
2216 2423 4.253685 ACCAATCTGTAAAGACCATGTCG 58.746 43.478 0.00 0.00 37.67 4.35
2250 2457 1.003580 ACAACCAATCATCCGCAGAGT 59.996 47.619 0.00 0.00 0.00 3.24
2257 2464 4.701956 ATGTTCGAACAACCAATCATCC 57.298 40.909 32.69 0.73 43.03 3.51
2279 2486 8.270030 GGGGGTCACACTACTAACTAAAAATAT 58.730 37.037 0.00 0.00 0.00 1.28
2281 2488 6.044637 TGGGGGTCACACTACTAACTAAAAAT 59.955 38.462 0.00 0.00 0.00 1.82
2320 2628 2.083774 TCAATGGCATTGGACTTCGAC 58.916 47.619 33.20 0.00 40.61 4.20
2409 2717 0.032678 CTGTACTGCTATGGAGGCCG 59.967 60.000 0.00 0.00 0.00 6.13
2410 2718 1.123928 ACTGTACTGCTATGGAGGCC 58.876 55.000 0.00 0.00 0.00 5.19
2419 2727 2.567169 TGAGCCATGTAACTGTACTGCT 59.433 45.455 0.00 0.00 34.87 4.24
2420 2728 2.932614 CTGAGCCATGTAACTGTACTGC 59.067 50.000 0.00 0.00 0.00 4.40
2428 2736 6.653740 ACCTTTAGTTTACTGAGCCATGTAAC 59.346 38.462 0.00 0.00 0.00 2.50
2431 2739 5.003804 CACCTTTAGTTTACTGAGCCATGT 58.996 41.667 0.00 0.00 0.00 3.21
2434 2742 4.141574 ACACACCTTTAGTTTACTGAGCCA 60.142 41.667 0.00 0.00 0.00 4.75
2451 2759 5.708230 TCCAATTGGACACTATAAACACACC 59.292 40.000 23.63 0.00 39.78 4.16
2533 2876 7.408132 ACGATTCACTATAATTTGGTCGATG 57.592 36.000 0.00 0.00 0.00 3.84
2549 2892 6.370593 TGTTCTAAAGCAATGAACGATTCAC 58.629 36.000 0.00 0.00 43.48 3.18
2559 2902 6.864685 ACAATGTCACATGTTCTAAAGCAATG 59.135 34.615 0.00 0.00 0.00 2.82
2563 2906 6.000891 TGACAATGTCACATGTTCTAAAGC 57.999 37.500 12.63 0.00 37.67 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.