AutoCloner

Multiple sequence alignment - TraesCS7A01G398700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G398700	chr7A	100.000	2468	0	0	1	2468	578134208	578131741	0.000000e+00	4558.0
1	TraesCS7A01G398700	chr7A	90.683	644	56	4	5	647	327954892	327954252	0.000000e+00	854.0
2	TraesCS7A01G398700	chr7A	90.373	644	58	4	5	647	327986398	327985758	0.000000e+00	843.0
3	TraesCS7A01G398700	chr2A	88.011	1835	132	25	670	2468	34784361	34782579	0.000000e+00	2089.0
4	TraesCS7A01G398700	chr2A	83.644	911	82	29	1610	2468	262153467	262152572	0.000000e+00	795.0
5	TraesCS7A01G398700	chr2A	95.455	44	1	1	2201	2244	667105454	667105496	4.400000e-08	69.4
6	TraesCS7A01G398700	chr3B	91.867	959	73	4	1059	2016	169278186	169277232	0.000000e+00	1334.0
7	TraesCS7A01G398700	chr3B	87.611	452	42	9	2018	2468	169277179	169276741	1.690000e-141	512.0
8	TraesCS7A01G398700	chr3B	89.706	272	24	3	668	937	169298192	169297923	6.530000e-91	344.0
9	TraesCS7A01G398700	chr3B	82.680	306	32	13	2179	2468	379952539	379952239	4.070000e-63	252.0
10	TraesCS7A01G398700	chr3B	90.110	91	9	0	933	1023	169278932	169278842	4.310000e-23	119.0
11	TraesCS7A01G398700	chr7B	85.228	941	77	31	1572	2468	602321255	602322177	0.000000e+00	911.0
12	TraesCS7A01G398700	chr5D	89.587	653	60	6	5	655	124654683	124655329	0.000000e+00	822.0
13	TraesCS7A01G398700	chr5D	89.441	644	62	5	5	647	461173521	461174159	0.000000e+00	808.0
14	TraesCS7A01G398700	chr3D	89.450	654	64	4	1	653	248147831	248147182	0.000000e+00	821.0
15	TraesCS7A01G398700	chr7D	89.580	643	59	5	7	647	484817942	484817306	0.000000e+00	809.0
16	TraesCS7A01G398700	chr4D	89.655	638	58	6	5	641	357182020	357182650	0.000000e+00	806.0
17	TraesCS7A01G398700	chr4D	81.388	317	35	15	2171	2468	256028303	256027992	1.140000e-58	237.0
18	TraesCS7A01G398700	chr4D	81.494	308	30	13	2179	2468	10628013	10628311	6.870000e-56	228.0
19	TraesCS7A01G398700	chr2D	89.302	645	65	4	5	647	335384261	335383619	0.000000e+00	806.0
20	TraesCS7A01G398700	chr4A	89.198	648	64	5	1	647	536576387	536577029	0.000000e+00	804.0
21	TraesCS7A01G398700	chr1A	83.172	309	41	8	2171	2468	294708033	294707725	3.130000e-69	272.0
22	TraesCS7A01G398700	chr1B	81.046	306	38	8	2179	2468	291873003	291872702	2.470000e-55	226.0
23	TraesCS7A01G398700	chr3A	92.562	121	9	0	2172	2292	106673789	106673909	9.070000e-40	174.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G398700	chr7A	578131741	578134208	2467	True	4558	4558	100.000000	1	2468	1	chr7A.!!$R3	2467
1	TraesCS7A01G398700	chr7A	327954252	327954892	640	True	854	854	90.683000	5	647	1	chr7A.!!$R1	642
2	TraesCS7A01G398700	chr7A	327985758	327986398	640	True	843	843	90.373000	5	647	1	chr7A.!!$R2	642
3	TraesCS7A01G398700	chr2A	34782579	34784361	1782	True	2089	2089	88.011000	670	2468	1	chr2A.!!$R1	1798
4	TraesCS7A01G398700	chr2A	262152572	262153467	895	True	795	795	83.644000	1610	2468	1	chr2A.!!$R2	858
5	TraesCS7A01G398700	chr3B	169276741	169278932	2191	True	655	1334	89.862667	933	2468	3	chr3B.!!$R3	1535
6	TraesCS7A01G398700	chr7B	602321255	602322177	922	False	911	911	85.228000	1572	2468	1	chr7B.!!$F1	896
7	TraesCS7A01G398700	chr5D	124654683	124655329	646	False	822	822	89.587000	5	655	1	chr5D.!!$F1	650
8	TraesCS7A01G398700	chr5D	461173521	461174159	638	False	808	808	89.441000	5	647	1	chr5D.!!$F2	642
9	TraesCS7A01G398700	chr3D	248147182	248147831	649	True	821	821	89.450000	1	653	1	chr3D.!!$R1	652
10	TraesCS7A01G398700	chr7D	484817306	484817942	636	True	809	809	89.580000	7	647	1	chr7D.!!$R1	640
11	TraesCS7A01G398700	chr4D	357182020	357182650	630	False	806	806	89.655000	5	641	1	chr4D.!!$F2	636
12	TraesCS7A01G398700	chr2D	335383619	335384261	642	True	806	806	89.302000	5	647	1	chr2D.!!$R1	642
13	TraesCS7A01G398700	chr4A	536576387	536577029	642	False	804	804	89.198000	1	647	1	chr4A.!!$F1	646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
745	757	0.755327	AGGTGCAACAAGGTGTTCCC	60.755	55.0	3.64	0.0	38.77	3.97	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1711	2352	0.238289	CCTTCAACGTTGATTGCGCT	59.762	50.0	30.1	0.0	37.0	5.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	3.407424	AGTTGAGTACATTGCTGCTGA	57.593	42.857	0.00	0.00	0.00	4.26
31	32	4.212143	TGAGTACATTGCTGCTGATTCT	57.788	40.909	0.00	0.00	0.00	2.40
59	60	4.577693	GTGCTCAATTGCTATGGATGAAGA	59.422	41.667	0.00	0.00	0.00	2.87
73	74	6.131972	TGGATGAAGAAAACTCTCAAGGAT	57.868	37.500	0.00	0.00	0.00	3.24
89	90	4.332543	TCAAGGATTACGACATCAATGTGC	59.667	41.667	0.00	0.00	41.95	4.57
91	92	4.260985	AGGATTACGACATCAATGTGCAA	58.739	39.130	0.00	0.00	41.95	4.08
116	117	7.520451	AATGTGCCACTCTACTACGATAATA	57.480	36.000	0.00	0.00	0.00	0.98
164	166	3.393800	CCAGTTCAACACTCGAAGACAT	58.606	45.455	0.00	0.00	30.92	3.06
175	178	3.195610	ACTCGAAGACATAGCACATCCAA	59.804	43.478	0.00	0.00	0.00	3.53
184	187	5.713025	ACATAGCACATCCAAATTTGTCAC	58.287	37.500	16.73	0.94	0.00	3.67
227	230	2.666317	TGAAGGGCGACATCTCTATCA	58.334	47.619	0.00	0.00	0.00	2.15
248	251	5.311265	TCAAGCATGTGAAGACTGAAGAAT	58.689	37.500	0.00	0.00	0.00	2.40
256	259	6.625362	TGTGAAGACTGAAGAATAGCTAGTG	58.375	40.000	0.00	0.00	0.00	2.74
288	291	2.751806	CAAAGCCCTTGGATGAGAAGAC	59.248	50.000	0.00	0.00	0.00	3.01
302	305	6.150140	GGATGAGAAGACATTTAGCAAGTTGT	59.850	38.462	4.48	0.00	0.00	3.32
319	322	6.317088	CAAGTTGTGGTGTGAGCTAAATATG	58.683	40.000	0.00	0.00	0.00	1.78
327	330	9.542462	GTGGTGTGAGCTAAATATGTTAGAATA	57.458	33.333	0.00	0.00	0.00	1.75
415	418	6.194876	TGCAACACATAAAGTAACGTTTTTCG	59.805	34.615	5.91	0.00	46.00	3.46
498	501	3.633525	AGCCCTACGATAATTGTACGTGA	59.366	43.478	0.00	0.00	40.40	4.35
548	552	1.671845	GTCACGCCACCAACAAAGTTA	59.328	47.619	0.00	0.00	0.00	2.24
618	628	8.057742	CGAAATGTTCAAATTCTTCAACTTTGG	58.942	33.333	0.00	0.00	32.15	3.28
629	639	7.587037	TTCTTCAACTTTGGATTGTCTTCAT	57.413	32.000	0.00	0.00	0.00	2.57
630	640	7.206981	TCTTCAACTTTGGATTGTCTTCATC	57.793	36.000	0.00	0.00	0.00	2.92
635	645	6.983906	ACTTTGGATTGTCTTCATCCTTTT	57.016	33.333	0.82	0.00	35.56	2.27
685	695	9.376075	AGTCAATGAACACTATTGTAATCTCAG	57.624	33.333	0.00	0.00	36.97	3.35
686	696	8.607459	GTCAATGAACACTATTGTAATCTCAGG	58.393	37.037	0.00	0.00	36.97	3.86
726	736	2.241160	TCACGAAGCGCCCCTATATAA	58.759	47.619	2.29	0.00	0.00	0.98
729	741	1.549170	CGAAGCGCCCCTATATAAGGT	59.451	52.381	2.29	0.00	44.90	3.50
743	755	5.897377	ATATAAGGTGCAACAAGGTGTTC	57.103	39.130	3.64	0.00	38.77	3.18
745	757	0.755327	AGGTGCAACAAGGTGTTCCC	60.755	55.000	3.64	0.00	38.77	3.97
746	758	1.358759	GTGCAACAAGGTGTTCCCG	59.641	57.895	0.00	0.00	38.77	5.14
751	763	2.021457	CAACAAGGTGTTCCCGAACTT	58.979	47.619	8.91	0.00	38.77	2.66
753	765	1.489230	ACAAGGTGTTCCCGAACTTCT	59.511	47.619	8.91	3.91	41.67	2.85
766	778	1.673920	GAACTTCTGAACCCGTGCAAA	59.326	47.619	0.00	0.00	0.00	3.68
779	791	2.417243	CCGTGCAAAGAAAATCCATCCC	60.417	50.000	0.00	0.00	0.00	3.85
783	795	2.417243	GCAAAGAAAATCCATCCCCACG	60.417	50.000	0.00	0.00	0.00	4.94
790	802	4.856801	CCATCCCCACGAAGCCCG	62.857	72.222	0.00	0.00	45.44	6.13
824	836	3.009115	CCCACCACACCCCGATCT	61.009	66.667	0.00	0.00	0.00	2.75
1036	1054	3.468326	GAATCCGGCTGCTCCTCCC	62.468	68.421	0.00	0.00	0.00	4.30
1120	1758	3.991051	CGCCGGGATCACGCCTAT	61.991	66.667	13.14	0.00	0.00	2.57
1183	1821	0.770499	TCCACATCCTCTTGGTTGCA	59.230	50.000	0.00	0.00	36.71	4.08
1184	1822	1.355381	TCCACATCCTCTTGGTTGCAT	59.645	47.619	0.00	0.00	36.71	3.96
1205	1843	0.846693	ACCACCACTCTGCCTTCTTT	59.153	50.000	0.00	0.00	0.00	2.52
1232	1870	2.048597	TTTGTCGCCGTCGCATCT	60.049	55.556	0.00	0.00	35.26	2.90
1249	1887	1.195115	TCTAGGCAGAAGCGAACCAT	58.805	50.000	0.00	0.00	43.41	3.55
1282	1920	2.591429	CAGTCCCAGCAACACGCA	60.591	61.111	0.00	0.00	46.13	5.24
1294	1932	0.865639	AACACGCAAAAAGCTGTCGC	60.866	50.000	0.00	0.00	42.61	5.19
1323	1961	1.971167	TTGGTTGTCCGCTCATGGC	60.971	57.895	0.00	0.00	36.30	4.40
1366	2004	4.662961	TGACCGTGGCAGTCTGCG	62.663	66.667	18.44	7.29	46.21	5.18
1429	2067	1.373497	AGCGAGCCTGTTCAGTTCG	60.373	57.895	14.83	14.83	0.00	3.95
1438	2076	2.802816	CCTGTTCAGTTCGTCTTCAAGG	59.197	50.000	0.00	0.00	0.00	3.61
1467	2106	1.359848	GCATCACGTTCACCCACTAG	58.640	55.000	0.00	0.00	0.00	2.57
1468	2107	1.067142	GCATCACGTTCACCCACTAGA	60.067	52.381	0.00	0.00	0.00	2.43
1513	2152	4.627058	CGCAGTTTAAAGTCCCCAATTTT	58.373	39.130	0.00	0.00	0.00	1.82
1553	2192	1.302949	GGTCACTATTGCAGGCCCA	59.697	57.895	0.00	0.00	0.00	5.36
1569	2208	1.526575	CCCACTTTGCCTGATGCGTT	61.527	55.000	0.00	0.00	45.60	4.84
1599	2239	2.288666	TCAAAAGAAAGAGCAGCGTGT	58.711	42.857	0.00	0.00	0.00	4.49
1634	2274	2.548057	TCCGCTCACTTGTTTGAATCAC	59.452	45.455	0.00	0.00	0.00	3.06
1642	2282	1.974265	TGTTTGAATCACGAAGGCCA	58.026	45.000	5.01	0.00	0.00	5.36
1650	2290	0.904865	TCACGAAGGCCACTGGATCT	60.905	55.000	5.01	0.00	0.00	2.75
1651	2291	0.036010	CACGAAGGCCACTGGATCTT	60.036	55.000	5.01	1.52	0.00	2.40
1711	2352	3.576078	TGTGGCTGGAGAAAAGAGAAA	57.424	42.857	0.00	0.00	0.00	2.52
1713	2354	2.227626	GTGGCTGGAGAAAAGAGAAAGC	59.772	50.000	0.00	0.00	0.00	3.51
1735	2376	3.312421	CGCAATCAACGTTGAAGGGATAT	59.688	43.478	32.69	13.44	41.13	1.63
1803	2444	2.485266	GTGCTAACACCACACAAACC	57.515	50.000	0.00	0.00	41.21	3.27
1866	2507	9.260002	GCATTCTATTTTGAAGAAAAGGTTCAA	57.740	29.630	0.00	0.00	41.16	2.69
1886	2527	4.400251	TCAATTCTGTCCCTGCATGATTTC	59.600	41.667	0.00	0.00	0.00	2.17
1985	2632	1.377725	ACAGCCGCCAAATCTCCTG	60.378	57.895	0.00	0.00	0.00	3.86
2055	2753	7.116662	TGTGAATTGTTATGGTGTACTTCGTAC	59.883	37.037	0.00	0.00	39.24	3.67
2064	2762	3.301642	GGTGTACTTCGTACGTGTATTGC	59.698	47.826	16.05	12.23	41.41	3.56
2125	2823	7.238571	TGTTTTAGAAGTTTCGAAGTTCACAC	58.761	34.615	19.04	6.27	42.10	3.82
2137	2835	2.846193	AGTTCACACGTGCCAAATACT	58.154	42.857	17.22	7.90	0.00	2.12
2243	2947	9.129209	GGTCAAATTAAAATAACAGAGCAGTTC	57.871	33.333	0.00	0.00	33.07	3.01
2258	2962	3.737305	GCAGTTCGATGCTCACTTAAAC	58.263	45.455	3.74	0.00	43.07	2.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	4.595762	AGCAATTGAGCACAACAAGAAT	57.404	36.364	10.34	0.00	38.90	2.40
31	32	3.825585	TCCATAGCAATTGAGCACAACAA	59.174	39.130	10.34	0.00	38.90	2.83
59	60	6.464222	TGATGTCGTAATCCTTGAGAGTTTT	58.536	36.000	0.00	0.00	0.00	2.43
73	74	5.628606	CACATTTTGCACATTGATGTCGTAA	59.371	36.000	1.95	0.00	39.39	3.18
89	90	4.242475	TCGTAGTAGAGTGGCACATTTTG	58.758	43.478	21.41	1.76	44.52	2.44
91	92	4.737855	ATCGTAGTAGAGTGGCACATTT	57.262	40.909	21.41	7.08	44.52	2.32
109	110	7.516481	CAATCTTGATGGCACTCTTATTATCG	58.484	38.462	0.00	0.00	0.00	2.92
116	117	3.015327	GAGCAATCTTGATGGCACTCTT	58.985	45.455	11.98	0.00	0.00	2.85
164	166	4.148079	TGGTGACAAATTTGGATGTGCTA	58.852	39.130	21.74	2.10	37.44	3.49
175	178	6.633500	TCTCGAAGAAAATGGTGACAAATT	57.367	33.333	0.00	0.00	40.08	1.82
184	187	5.808042	ACACATGATCTCGAAGAAAATGG	57.192	39.130	0.00	0.00	34.09	3.16
227	230	5.353678	GCTATTCTTCAGTCTTCACATGCTT	59.646	40.000	0.00	0.00	0.00	3.91
248	251	6.463049	GGCTTTGTGAAGATATCCACTAGCTA	60.463	42.308	22.73	0.00	39.38	3.32
256	259	3.633986	CCAAGGGCTTTGTGAAGATATCC	59.366	47.826	8.62	0.00	34.71	2.59
288	291	4.539870	CTCACACCACAACTTGCTAAATG	58.460	43.478	0.00	0.00	0.00	2.32
327	330	8.203485	TGTGTCCTTTTCAAAGAGCATTTAAAT	58.797	29.630	0.56	0.00	38.28	1.40
336	339	4.823989	AGGATGTGTGTCCTTTTCAAAGAG	59.176	41.667	0.56	0.00	46.45	2.85
415	418	6.410540	AGAGGGTTAGTCTTCATTGATTGAC	58.589	40.000	10.51	10.51	32.84	3.18
475	478	4.821260	TCACGTACAATTATCGTAGGGCTA	59.179	41.667	0.00	0.00	36.05	3.93
498	501	8.135529	TCGTATAAGAATGATGATTTCAGACGT	58.864	33.333	0.00	0.00	37.89	4.34
586	594	7.711846	TGAAGAATTTGAACATTTCGAGGAAA	58.288	30.769	0.00	0.00	35.94	3.13
593	601	9.097257	TCCAAAGTTGAAGAATTTGAACATTTC	57.903	29.630	1.07	0.00	36.28	2.17
596	604	9.048446	CAATCCAAAGTTGAAGAATTTGAACAT	57.952	29.630	1.07	0.00	36.28	2.71
618	628	4.938226	AGTCGGAAAAGGATGAAGACAATC	59.062	41.667	0.00	0.00	0.00	2.67
658	668	9.725019	TGAGATTACAATAGTGTTCATTGACTT	57.275	29.630	0.00	0.00	39.30	3.01
659	669	9.376075	CTGAGATTACAATAGTGTTCATTGACT	57.624	33.333	0.00	0.00	39.30	3.41
660	670	8.607459	CCTGAGATTACAATAGTGTTCATTGAC	58.393	37.037	0.00	0.00	39.30	3.18
661	671	8.539544	TCCTGAGATTACAATAGTGTTCATTGA	58.460	33.333	0.00	0.00	39.30	2.57
662	672	8.722480	TCCTGAGATTACAATAGTGTTCATTG	57.278	34.615	0.00	0.00	39.30	2.82
663	673	9.911788	AATCCTGAGATTACAATAGTGTTCATT	57.088	29.630	0.00	0.00	41.05	2.57
691	701	7.320560	GGCGCTTCGTGATTTAAATAGTTATTC	59.679	37.037	7.64	0.00	0.00	1.75
703	713	0.180406	ATAGGGGCGCTTCGTGATTT	59.820	50.000	10.13	0.00	0.00	2.17
704	714	1.045407	TATAGGGGCGCTTCGTGATT	58.955	50.000	10.13	0.00	0.00	2.57
726	736	2.807247	GGAACACCTTGTTGCACCT	58.193	52.632	5.76	0.00	46.14	4.00
743	755	0.949105	CACGGGTTCAGAAGTTCGGG	60.949	60.000	3.08	0.00	0.00	5.14
745	757	0.878523	TGCACGGGTTCAGAAGTTCG	60.879	55.000	0.00	0.00	0.00	3.95
746	758	1.305201	TTGCACGGGTTCAGAAGTTC	58.695	50.000	0.00	0.00	0.00	3.01
751	763	2.045561	TTTCTTTGCACGGGTTCAGA	57.954	45.000	0.00	0.00	0.00	3.27
753	765	2.035321	GGATTTTCTTTGCACGGGTTCA	59.965	45.455	0.00	0.00	0.00	3.18
766	778	2.945890	GCTTCGTGGGGATGGATTTTCT	60.946	50.000	0.00	0.00	0.00	2.52
783	795	1.749258	GGGATTGGTGACGGGCTTC	60.749	63.158	0.00	0.00	0.00	3.86
790	802	0.465642	GGGGAATCGGGATTGGTGAC	60.466	60.000	0.00	0.00	0.00	3.67
791	803	0.916845	TGGGGAATCGGGATTGGTGA	60.917	55.000	0.00	0.00	0.00	4.02
798	810	2.204013	TGTGGTGGGGAATCGGGA	60.204	61.111	0.00	0.00	0.00	5.14
1146	1784	1.305633	AGGAGCAGTGCCTGAGCTA	60.306	57.895	12.58	0.00	39.02	3.32
1183	1821	0.326264	GAAGGCAGAGTGGTGGTCAT	59.674	55.000	0.00	0.00	0.00	3.06
1184	1822	0.764369	AGAAGGCAGAGTGGTGGTCA	60.764	55.000	0.00	0.00	0.00	4.02
1232	1870	1.137086	GAGATGGTTCGCTTCTGCCTA	59.863	52.381	0.00	0.00	35.36	3.93
1266	1904	1.034838	TTTTGCGTGTTGCTGGGACT	61.035	50.000	0.00	0.00	46.63	3.85
1270	1908	1.926490	GCTTTTTGCGTGTTGCTGG	59.074	52.632	0.00	0.00	46.63	4.85
1282	1920	1.244816	GTAAGGGGCGACAGCTTTTT	58.755	50.000	0.00	0.00	44.37	1.94
1294	1932	1.546998	GGACAACCAACAGGTAAGGGG	60.547	57.143	0.00	0.00	33.53	4.79
1323	1961	1.517832	CTCAGCGTAGGGAGGGTTG	59.482	63.158	0.00	0.00	0.00	3.77
1429	2067	1.633852	CGCTGCTGCTCCTTGAAGAC	61.634	60.000	14.03	0.00	36.97	3.01
1438	2076	4.219846	CGTGATGCGCTGCTGCTC	62.220	66.667	9.73	6.30	36.97	4.26
1467	2106	0.250338	GGAGTGACTGGTGGTTGGTC	60.250	60.000	0.00	0.00	0.00	4.02
1468	2107	1.705997	GGGAGTGACTGGTGGTTGGT	61.706	60.000	0.00	0.00	0.00	3.67
1553	2192	2.076863	GACTAACGCATCAGGCAAAGT	58.923	47.619	0.00	0.00	45.17	2.66
1569	2208	6.119536	TGCTCTTTCTTTTGAAGTTGGACTA	58.880	36.000	0.00	0.00	39.88	2.59
1634	2274	2.918712	ATAAGATCCAGTGGCCTTCG	57.081	50.000	16.63	0.00	0.00	3.79
1672	2312	4.397103	CCACATGCTTTGCTTCTTCTATCA	59.603	41.667	0.00	0.00	0.00	2.15
1711	2352	0.238289	CCTTCAACGTTGATTGCGCT	59.762	50.000	30.10	0.00	37.00	5.92
1713	2354	0.871722	TCCCTTCAACGTTGATTGCG	59.128	50.000	30.10	17.95	37.00	4.85
1735	2376	5.848286	AATCCTAGCCACATATTCATCCA	57.152	39.130	0.00	0.00	0.00	3.41
1860	2501	1.909700	TGCAGGGACAGAATTGAACC	58.090	50.000	0.00	0.00	0.00	3.62
1866	2507	3.952323	CAGAAATCATGCAGGGACAGAAT	59.048	43.478	0.00	0.00	0.00	2.40
1910	2551	4.497516	ACTATCATACTGCCTGAGGGATT	58.502	43.478	0.00	0.00	33.58	3.01
2055	2753	6.984740	AAAAATAACACACAGCAATACACG	57.015	33.333	0.00	0.00	0.00	4.49
2081	2779	7.763172	AAAACATGCACTTCGTTGAAAATTA	57.237	28.000	0.00	0.00	0.00	1.40
2097	2795	6.910433	TGAACTTCGAAACTTCTAAAACATGC	59.090	34.615	13.61	0.00	0.00	4.06
2125	2823	5.698832	TGAATTTCTTCAGTATTTGGCACG	58.301	37.500	0.00	0.00	36.46	5.34
2214	2918	9.132521	CTGCTCTGTTATTTTAATTTGACCTTG	57.867	33.333	0.00	0.00	0.00	3.61
2243	2947	5.551760	ATCCAAAGTTTAAGTGAGCATCG	57.448	39.130	0.00	0.00	38.61	3.84
2328	3032	8.784043	GTTATTTTGAGTTGCCTTCTCTCTTAA	58.216	33.333	0.00	0.00	33.59	1.85
2385	3091	6.817765	TCTCGGCATTTCAATTTTTCTAGT	57.182	33.333	0.00	0.00	0.00	2.57
2388	3094	5.011023	ACCTTCTCGGCATTTCAATTTTTCT	59.989	36.000	0.00	0.00	35.61	2.52
2394	3114	3.071874	TGACCTTCTCGGCATTTCAAT	57.928	42.857	0.00	0.00	35.61	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.