Multiple sequence alignment - TraesCS7A01G398500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G398500 chr7A 100.000 2697 0 0 1 2697 577496571 577499267 0.000000e+00 4981.0
1 TraesCS7A01G398500 chr7A 98.123 1652 25 3 737 2382 577671131 577669480 0.000000e+00 2874.0
2 TraesCS7A01G398500 chr7A 99.160 476 4 0 271 746 577671649 577671174 0.000000e+00 857.0
3 TraesCS7A01G398500 chr7A 95.455 330 9 5 2370 2697 336181183 336180858 3.080000e-144 521.0
4 TraesCS7A01G398500 chr7A 77.878 443 57 14 737 1163 673983383 673982966 1.250000e-58 237.0
5 TraesCS7A01G398500 chr5A 97.300 926 18 4 1347 2266 543954821 543953897 0.000000e+00 1565.0
6 TraesCS7A01G398500 chr5A 96.845 317 8 2 2382 2697 346993907 346993592 1.840000e-146 529.0
7 TraesCS7A01G398500 chr5A 81.046 459 52 16 737 1181 414515673 414516110 1.550000e-87 333.0
8 TraesCS7A01G398500 chrUn 94.719 909 40 4 1393 2299 193296940 193296038 0.000000e+00 1406.0
9 TraesCS7A01G398500 chrUn 94.118 561 29 2 737 1296 344188086 344187529 0.000000e+00 850.0
10 TraesCS7A01G398500 chrUn 93.939 561 30 2 737 1296 342092279 342091722 0.000000e+00 845.0
11 TraesCS7A01G398500 chrUn 94.255 470 26 1 1831 2299 462260064 462260533 0.000000e+00 717.0
12 TraesCS7A01G398500 chrUn 94.444 324 18 0 1976 2299 358676013 358676336 1.440000e-137 499.0
13 TraesCS7A01G398500 chrUn 97.273 110 3 0 637 746 193255411 193255302 1.270000e-43 187.0
14 TraesCS7A01G398500 chrUn 97.273 110 3 0 637 746 342092431 342092322 1.270000e-43 187.0
15 TraesCS7A01G398500 chrUn 97.273 110 3 0 637 746 344188238 344188129 1.270000e-43 187.0
16 TraesCS7A01G398500 chrUn 95.370 108 5 0 1287 1394 193297082 193296975 3.570000e-39 172.0
17 TraesCS7A01G398500 chrUn 94.872 39 1 1 737 774 193255259 193255221 2.900000e-05 60.2
18 TraesCS7A01G398500 chr3B 93.092 912 51 9 1390 2292 696670584 696671492 0.000000e+00 1325.0
19 TraesCS7A01G398500 chr3B 93.333 585 33 5 1393 1974 57343824 57343243 0.000000e+00 859.0
20 TraesCS7A01G398500 chr3B 92.821 585 36 5 1393 1974 57282245 57281664 0.000000e+00 843.0
21 TraesCS7A01G398500 chr3B 91.238 525 41 3 2 525 57283291 57282771 0.000000e+00 710.0
22 TraesCS7A01G398500 chr3B 91.945 509 34 3 891 1395 57344362 57343857 0.000000e+00 706.0
23 TraesCS7A01G398500 chr3B 91.945 509 32 4 891 1395 696670051 696670554 0.000000e+00 704.0
24 TraesCS7A01G398500 chr3B 90.766 509 30 7 891 1395 57282773 57282278 0.000000e+00 664.0
25 TraesCS7A01G398500 chr3B 92.857 322 22 1 205 525 57344681 57344360 1.460000e-127 466.0
26 TraesCS7A01G398500 chr3B 87.615 218 22 3 2 218 57349804 57349591 5.770000e-62 248.0
27 TraesCS7A01G398500 chr3B 94.444 108 5 1 335 442 696669930 696670036 5.970000e-37 165.0
28 TraesCS7A01G398500 chr3B 92.000 100 5 3 2291 2390 683598133 683598229 1.300000e-28 137.0
29 TraesCS7A01G398500 chr6A 95.710 746 32 0 1 746 261284267 261283522 0.000000e+00 1201.0
30 TraesCS7A01G398500 chr6A 95.174 746 36 0 1 746 259899348 259898603 0.000000e+00 1179.0
31 TraesCS7A01G398500 chr6A 97.143 315 7 2 2381 2693 481861840 481862154 5.110000e-147 531.0
32 TraesCS7A01G398500 chr6A 91.429 70 2 3 2326 2392 154582549 154582481 2.860000e-15 93.5
33 TraesCS7A01G398500 chr7D 89.462 911 62 7 1396 2299 33058331 33057448 0.000000e+00 1120.0
34 TraesCS7A01G398500 chr7D 92.810 751 43 5 1 744 33059830 33059084 0.000000e+00 1077.0
35 TraesCS7A01G398500 chr7D 89.778 675 50 11 738 1395 33059038 33058366 0.000000e+00 846.0
36 TraesCS7A01G398500 chr6B 90.368 571 40 10 1738 2299 430531035 430530471 0.000000e+00 736.0
37 TraesCS7A01G398500 chr7B 90.317 568 44 9 1738 2296 621621108 621621673 0.000000e+00 734.0
38 TraesCS7A01G398500 chr7B 82.628 449 54 9 1387 1819 125885326 125885766 2.540000e-100 375.0
39 TraesCS7A01G398500 chr4A 97.468 316 6 2 2381 2694 492304999 492305314 3.060000e-149 538.0
40 TraesCS7A01G398500 chr4A 96.855 318 9 1 2381 2697 292614722 292614405 5.110000e-147 531.0
41 TraesCS7A01G398500 chr4A 95.988 324 8 5 2373 2694 576365698 576366018 3.080000e-144 521.0
42 TraesCS7A01G398500 chr1A 97.444 313 6 2 2386 2697 247885412 247885101 1.420000e-147 532.0
43 TraesCS7A01G398500 chr1A 97.143 315 8 1 2381 2694 92647897 92648211 5.110000e-147 531.0
44 TraesCS7A01G398500 chr3A 96.845 317 8 2 2381 2695 161275721 161276037 1.840000e-146 529.0
45 TraesCS7A01G398500 chr4B 78.498 679 80 34 737 1394 182613516 182612883 4.210000e-103 385.0
46 TraesCS7A01G398500 chr2A 82.629 426 50 12 1387 1798 6476384 6476799 3.300000e-94 355.0
47 TraesCS7A01G398500 chr6D 82.836 402 46 16 1906 2296 43960884 43961273 3.330000e-89 339.0
48 TraesCS7A01G398500 chr2B 100.000 29 0 0 2353 2381 779046218 779046190 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G398500 chr7A 577496571 577499267 2696 False 4981.000000 4981 100.000000 1 2697 1 chr7A.!!$F1 2696
1 TraesCS7A01G398500 chr7A 577669480 577671649 2169 True 1865.500000 2874 98.641500 271 2382 2 chr7A.!!$R3 2111
2 TraesCS7A01G398500 chr5A 543953897 543954821 924 True 1565.000000 1565 97.300000 1347 2266 1 chr5A.!!$R2 919
3 TraesCS7A01G398500 chrUn 193296038 193297082 1044 True 789.000000 1406 95.044500 1287 2299 2 chrUn.!!$R2 1012
4 TraesCS7A01G398500 chrUn 344187529 344188238 709 True 518.500000 850 95.695500 637 1296 2 chrUn.!!$R4 659
5 TraesCS7A01G398500 chrUn 342091722 342092431 709 True 516.000000 845 95.606000 637 1296 2 chrUn.!!$R3 659
6 TraesCS7A01G398500 chr3B 57281664 57283291 1627 True 739.000000 843 91.608333 2 1974 3 chr3B.!!$R2 1972
7 TraesCS7A01G398500 chr3B 696669930 696671492 1562 False 731.333333 1325 93.160333 335 2292 3 chr3B.!!$F2 1957
8 TraesCS7A01G398500 chr3B 57343243 57344681 1438 True 677.000000 859 92.711667 205 1974 3 chr3B.!!$R3 1769
9 TraesCS7A01G398500 chr6A 261283522 261284267 745 True 1201.000000 1201 95.710000 1 746 1 chr6A.!!$R3 745
10 TraesCS7A01G398500 chr6A 259898603 259899348 745 True 1179.000000 1179 95.174000 1 746 1 chr6A.!!$R2 745
11 TraesCS7A01G398500 chr7D 33057448 33059830 2382 True 1014.333333 1120 90.683333 1 2299 3 chr7D.!!$R1 2298
12 TraesCS7A01G398500 chr6B 430530471 430531035 564 True 736.000000 736 90.368000 1738 2299 1 chr6B.!!$R1 561
13 TraesCS7A01G398500 chr7B 621621108 621621673 565 False 734.000000 734 90.317000 1738 2296 1 chr7B.!!$F2 558
14 TraesCS7A01G398500 chr4B 182612883 182613516 633 True 385.000000 385 78.498000 737 1394 1 chr4B.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 533 0.324091 ACCCCGATCTGTAGGAACGT 60.324 55.0 0.0 0.0 38.32 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2511 2752 0.324091 ATTCCTCAGCTTGCCCTTGG 60.324 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.148171 GGCTAAGATAAAAGATGCTCACAGTTT 60.148 37.037 0.00 0.00 0.00 2.66
58 59 6.882610 AAGATGCTCACAGTTTGTTCATAA 57.117 33.333 0.00 0.00 0.00 1.90
123 125 2.424601 GAGGTGGTGTATGTACGTGCTA 59.575 50.000 4.97 0.00 0.00 3.49
524 533 0.324091 ACCCCGATCTGTAGGAACGT 60.324 55.000 0.00 0.00 38.32 3.99
1187 1284 1.260544 GGTTGGCTGAAGCTTTGGAT 58.739 50.000 0.00 0.00 41.70 3.41
1197 1294 5.106157 GCTGAAGCTTTGGATTGCTAAAGTA 60.106 40.000 0.00 0.00 42.57 2.24
1277 1378 7.397476 TGGAGATGAGCTTAAGAGAAGAAAGTA 59.603 37.037 6.67 0.00 0.00 2.24
1616 1823 4.819630 ACAGAAAGCGGATTGTTGAGTTTA 59.180 37.500 0.00 0.00 0.00 2.01
1679 1886 6.621380 TGAAGAGTATTTCAAGCAAAGATGCG 60.621 38.462 0.00 0.00 43.34 4.73
1910 2126 1.552578 TCTTTGGCACCTACGCTCTA 58.447 50.000 0.00 0.00 0.00 2.43
1982 2199 4.209080 GGAGCAATTTTGTTCGTTTTCCTG 59.791 41.667 1.80 0.00 39.02 3.86
1988 2205 4.619437 TTTGTTCGTTTTCCTGTGTACC 57.381 40.909 0.00 0.00 0.00 3.34
2141 2359 4.880759 TGGTTGTTATTGCAGATTGTTGG 58.119 39.130 0.00 0.00 0.00 3.77
2306 2547 3.773418 TTTACTTCCGGTGGATGTTGA 57.227 42.857 0.00 0.00 40.03 3.18
2361 2602 3.223435 TCAATTTTTCCCCGTAGCAACA 58.777 40.909 0.00 0.00 0.00 3.33
2423 2664 9.948964 ATAAAAGAAGAATGCAATAAAAGCCTT 57.051 25.926 0.00 0.00 0.00 4.35
2425 2666 9.777297 AAAAGAAGAATGCAATAAAAGCCTTAA 57.223 25.926 0.00 0.00 0.00 1.85
2426 2667 9.948964 AAAGAAGAATGCAATAAAAGCCTTAAT 57.051 25.926 0.00 0.00 0.00 1.40
2427 2668 8.937634 AGAAGAATGCAATAAAAGCCTTAATG 57.062 30.769 0.00 0.00 0.00 1.90
2428 2669 7.493645 AGAAGAATGCAATAAAAGCCTTAATGC 59.506 33.333 8.57 8.57 0.00 3.56
2429 2670 6.642430 AGAATGCAATAAAAGCCTTAATGCA 58.358 32.000 16.85 16.85 45.16 3.96
2430 2671 7.104939 AGAATGCAATAAAAGCCTTAATGCAA 58.895 30.769 17.91 6.80 44.39 4.08
2431 2672 7.771826 AGAATGCAATAAAAGCCTTAATGCAAT 59.228 29.630 17.91 12.38 44.39 3.56
2432 2673 6.665474 TGCAATAAAAGCCTTAATGCAATG 57.335 33.333 13.70 0.00 39.15 2.82
2433 2674 5.064962 TGCAATAAAAGCCTTAATGCAATGC 59.935 36.000 13.70 0.00 39.15 3.56
2434 2675 5.064962 GCAATAAAAGCCTTAATGCAATGCA 59.935 36.000 11.44 11.44 44.86 3.96
2475 2716 5.303165 TGCATTAGAGCAGAATGATACAGG 58.697 41.667 8.85 0.00 40.11 4.00
2476 2717 5.163269 TGCATTAGAGCAGAATGATACAGGT 60.163 40.000 8.85 0.00 40.11 4.00
2477 2718 6.041979 TGCATTAGAGCAGAATGATACAGGTA 59.958 38.462 8.85 0.00 40.11 3.08
2478 2719 6.589523 GCATTAGAGCAGAATGATACAGGTAG 59.410 42.308 8.85 0.00 39.69 3.18
2479 2720 7.665690 CATTAGAGCAGAATGATACAGGTAGT 58.334 38.462 0.29 0.00 39.69 2.73
2480 2721 5.528043 AGAGCAGAATGATACAGGTAGTG 57.472 43.478 0.00 0.00 39.69 2.74
2481 2722 4.054671 GAGCAGAATGATACAGGTAGTGC 58.945 47.826 0.00 0.00 39.69 4.40
2482 2723 2.797156 GCAGAATGATACAGGTAGTGCG 59.203 50.000 0.00 0.00 39.69 5.34
2483 2724 3.490933 GCAGAATGATACAGGTAGTGCGA 60.491 47.826 0.00 0.00 39.69 5.10
2484 2725 4.797604 GCAGAATGATACAGGTAGTGCGAT 60.798 45.833 0.00 0.00 39.69 4.58
2485 2726 5.564848 GCAGAATGATACAGGTAGTGCGATA 60.565 44.000 0.00 0.00 39.69 2.92
2486 2727 6.447162 CAGAATGATACAGGTAGTGCGATAA 58.553 40.000 0.00 0.00 39.69 1.75
2487 2728 6.584184 CAGAATGATACAGGTAGTGCGATAAG 59.416 42.308 0.00 0.00 39.69 1.73
2488 2729 8.728402 CAGAATGATACAGGTAGTGCGATAAGC 61.728 44.444 0.00 0.00 43.45 3.09
2505 2746 7.772332 CGATAAGCAAAAAGTAGGACTATGT 57.228 36.000 0.00 0.00 0.00 2.29
2506 2747 7.842484 CGATAAGCAAAAAGTAGGACTATGTC 58.158 38.462 0.00 0.00 0.00 3.06
2516 2757 1.132500 GGACTATGTCCCCTCCAAGG 58.868 60.000 5.49 0.00 46.19 3.61
2525 2766 2.759114 CCTCCAAGGGCAAGCTGA 59.241 61.111 0.00 0.00 0.00 4.26
2526 2767 1.378250 CCTCCAAGGGCAAGCTGAG 60.378 63.158 0.00 0.00 0.00 3.35
2527 2768 1.378250 CTCCAAGGGCAAGCTGAGG 60.378 63.158 0.00 0.00 0.00 3.86
2528 2769 1.845627 CTCCAAGGGCAAGCTGAGGA 61.846 60.000 0.00 0.00 0.00 3.71
2529 2770 1.075482 CCAAGGGCAAGCTGAGGAA 59.925 57.895 0.00 0.00 0.00 3.36
2530 2771 0.324091 CCAAGGGCAAGCTGAGGAAT 60.324 55.000 0.00 0.00 0.00 3.01
2531 2772 1.064463 CCAAGGGCAAGCTGAGGAATA 60.064 52.381 0.00 0.00 0.00 1.75
2532 2773 2.621407 CCAAGGGCAAGCTGAGGAATAA 60.621 50.000 0.00 0.00 0.00 1.40
2533 2774 3.294214 CAAGGGCAAGCTGAGGAATAAT 58.706 45.455 0.00 0.00 0.00 1.28
2534 2775 4.464008 CAAGGGCAAGCTGAGGAATAATA 58.536 43.478 0.00 0.00 0.00 0.98
2535 2776 5.075493 CAAGGGCAAGCTGAGGAATAATAT 58.925 41.667 0.00 0.00 0.00 1.28
2536 2777 5.330648 AGGGCAAGCTGAGGAATAATATT 57.669 39.130 0.00 0.00 0.00 1.28
2537 2778 6.454223 AGGGCAAGCTGAGGAATAATATTA 57.546 37.500 0.00 0.00 0.00 0.98
2538 2779 6.852404 AGGGCAAGCTGAGGAATAATATTAA 58.148 36.000 0.00 0.00 0.00 1.40
2539 2780 7.297614 AGGGCAAGCTGAGGAATAATATTAAA 58.702 34.615 0.00 0.00 0.00 1.52
2540 2781 7.449704 AGGGCAAGCTGAGGAATAATATTAAAG 59.550 37.037 0.00 0.00 0.00 1.85
2541 2782 7.087007 GGCAAGCTGAGGAATAATATTAAAGC 58.913 38.462 0.00 3.16 0.00 3.51
2542 2783 7.255590 GGCAAGCTGAGGAATAATATTAAAGCA 60.256 37.037 0.00 0.00 0.00 3.91
2543 2784 8.137437 GCAAGCTGAGGAATAATATTAAAGCAA 58.863 33.333 0.00 0.00 0.00 3.91
2544 2785 9.674824 CAAGCTGAGGAATAATATTAAAGCAAG 57.325 33.333 0.00 0.00 0.00 4.01
2545 2786 8.986929 AGCTGAGGAATAATATTAAAGCAAGT 57.013 30.769 0.00 0.00 0.00 3.16
2561 2802 5.950965 AGCAAGTATTTCACTCGTTATCG 57.049 39.130 0.00 0.00 36.04 2.92
2562 2803 5.408356 AGCAAGTATTTCACTCGTTATCGT 58.592 37.500 0.00 0.00 36.04 3.73
2563 2804 6.558009 AGCAAGTATTTCACTCGTTATCGTA 58.442 36.000 0.00 0.00 36.04 3.43
2564 2805 7.031372 AGCAAGTATTTCACTCGTTATCGTAA 58.969 34.615 0.00 0.00 36.04 3.18
2565 2806 7.705325 AGCAAGTATTTCACTCGTTATCGTAAT 59.295 33.333 0.00 0.00 36.04 1.89
2566 2807 7.997104 GCAAGTATTTCACTCGTTATCGTAATC 59.003 37.037 0.00 0.00 36.04 1.75
2567 2808 8.477709 CAAGTATTTCACTCGTTATCGTAATCC 58.522 37.037 0.00 0.00 36.04 3.01
2568 2809 7.709947 AGTATTTCACTCGTTATCGTAATCCA 58.290 34.615 0.00 0.00 38.33 3.41
2569 2810 6.823678 ATTTCACTCGTTATCGTAATCCAC 57.176 37.500 0.00 0.00 38.33 4.02
2570 2811 4.297299 TCACTCGTTATCGTAATCCACC 57.703 45.455 0.00 0.00 38.33 4.61
2571 2812 3.949754 TCACTCGTTATCGTAATCCACCT 59.050 43.478 0.00 0.00 38.33 4.00
2572 2813 4.042398 CACTCGTTATCGTAATCCACCTG 58.958 47.826 0.00 0.00 38.33 4.00
2573 2814 3.067742 ACTCGTTATCGTAATCCACCTGG 59.932 47.826 0.00 0.00 38.33 4.45
2574 2815 2.363038 TCGTTATCGTAATCCACCTGGG 59.637 50.000 0.00 0.00 38.33 4.45
2575 2816 3.940746 TCGTTATCGTAATCCACCTGGGA 60.941 47.826 0.00 0.00 43.47 4.37
2576 2817 5.762683 TCGTTATCGTAATCCACCTGGGAG 61.763 50.000 0.00 0.00 42.97 4.30
2591 2832 3.558674 GGAGTTCCCTGGTGTGATG 57.441 57.895 0.00 0.00 0.00 3.07
2592 2833 0.693049 GGAGTTCCCTGGTGTGATGT 59.307 55.000 0.00 0.00 0.00 3.06
2593 2834 1.906574 GGAGTTCCCTGGTGTGATGTA 59.093 52.381 0.00 0.00 0.00 2.29
2594 2835 2.093447 GGAGTTCCCTGGTGTGATGTAG 60.093 54.545 0.00 0.00 0.00 2.74
2595 2836 1.279271 AGTTCCCTGGTGTGATGTAGC 59.721 52.381 0.00 0.00 0.00 3.58
2596 2837 1.279271 GTTCCCTGGTGTGATGTAGCT 59.721 52.381 0.00 0.00 0.00 3.32
2597 2838 1.656587 TCCCTGGTGTGATGTAGCTT 58.343 50.000 0.00 0.00 0.00 3.74
2598 2839 1.985159 TCCCTGGTGTGATGTAGCTTT 59.015 47.619 0.00 0.00 0.00 3.51
2599 2840 2.027192 TCCCTGGTGTGATGTAGCTTTC 60.027 50.000 0.00 0.00 0.00 2.62
2600 2841 2.026822 CCCTGGTGTGATGTAGCTTTCT 60.027 50.000 0.00 0.00 0.00 2.52
2601 2842 3.005554 CCTGGTGTGATGTAGCTTTCTG 58.994 50.000 0.00 0.00 0.00 3.02
2602 2843 2.417933 CTGGTGTGATGTAGCTTTCTGC 59.582 50.000 0.00 0.00 43.29 4.26
2603 2844 1.740025 GGTGTGATGTAGCTTTCTGCC 59.260 52.381 0.00 0.00 44.23 4.85
2604 2845 2.616510 GGTGTGATGTAGCTTTCTGCCT 60.617 50.000 0.00 0.00 44.23 4.75
2605 2846 2.675348 GTGTGATGTAGCTTTCTGCCTC 59.325 50.000 0.00 0.00 44.23 4.70
2606 2847 2.284190 GTGATGTAGCTTTCTGCCTCC 58.716 52.381 0.00 0.00 44.23 4.30
2607 2848 2.093235 GTGATGTAGCTTTCTGCCTCCT 60.093 50.000 0.00 0.00 44.23 3.69
2608 2849 2.573462 TGATGTAGCTTTCTGCCTCCTT 59.427 45.455 0.00 0.00 44.23 3.36
2609 2850 2.479566 TGTAGCTTTCTGCCTCCTTG 57.520 50.000 0.00 0.00 44.23 3.61
2610 2851 1.003580 TGTAGCTTTCTGCCTCCTTGG 59.996 52.381 0.00 0.00 44.23 3.61
2611 2852 1.003696 GTAGCTTTCTGCCTCCTTGGT 59.996 52.381 0.00 0.00 44.23 3.67
2612 2853 0.480252 AGCTTTCTGCCTCCTTGGTT 59.520 50.000 0.00 0.00 44.23 3.67
2613 2854 0.600057 GCTTTCTGCCTCCTTGGTTG 59.400 55.000 0.00 0.00 38.35 3.77
2614 2855 0.600057 CTTTCTGCCTCCTTGGTTGC 59.400 55.000 0.00 0.00 38.35 4.17
2615 2856 0.185901 TTTCTGCCTCCTTGGTTGCT 59.814 50.000 0.00 0.00 38.35 3.91
2616 2857 0.538057 TTCTGCCTCCTTGGTTGCTG 60.538 55.000 0.00 4.92 38.35 4.41
2617 2858 2.598394 TGCCTCCTTGGTTGCTGC 60.598 61.111 0.00 0.00 38.35 5.25
2618 2859 2.598394 GCCTCCTTGGTTGCTGCA 60.598 61.111 0.00 0.00 38.35 4.41
2619 2860 1.980772 GCCTCCTTGGTTGCTGCAT 60.981 57.895 1.84 0.00 38.35 3.96
2620 2861 1.941999 GCCTCCTTGGTTGCTGCATC 61.942 60.000 1.84 1.98 38.35 3.91
2621 2862 0.609957 CCTCCTTGGTTGCTGCATCA 60.610 55.000 1.84 2.37 0.00 3.07
2622 2863 1.471119 CTCCTTGGTTGCTGCATCAT 58.529 50.000 1.84 0.00 0.00 2.45
2623 2864 1.134367 CTCCTTGGTTGCTGCATCATG 59.866 52.381 1.84 7.65 0.00 3.07
2624 2865 0.892755 CCTTGGTTGCTGCATCATGT 59.107 50.000 1.84 0.00 0.00 3.21
2625 2866 1.403647 CCTTGGTTGCTGCATCATGTG 60.404 52.381 1.84 0.10 0.00 3.21
2626 2867 1.271379 CTTGGTTGCTGCATCATGTGT 59.729 47.619 1.84 0.00 0.00 3.72
2627 2868 1.330234 TGGTTGCTGCATCATGTGTT 58.670 45.000 1.84 0.00 0.00 3.32
2628 2869 1.270274 TGGTTGCTGCATCATGTGTTC 59.730 47.619 1.84 0.00 0.00 3.18
2629 2870 1.609932 GTTGCTGCATCATGTGTTCG 58.390 50.000 1.84 0.00 0.00 3.95
2630 2871 0.522626 TTGCTGCATCATGTGTTCGG 59.477 50.000 1.84 0.00 0.00 4.30
2631 2872 1.226491 GCTGCATCATGTGTTCGGC 60.226 57.895 0.00 0.00 0.00 5.54
2632 2873 1.925415 GCTGCATCATGTGTTCGGCA 61.925 55.000 0.00 0.00 0.00 5.69
2633 2874 0.522626 CTGCATCATGTGTTCGGCAA 59.477 50.000 0.00 0.00 0.00 4.52
2634 2875 1.133598 CTGCATCATGTGTTCGGCAAT 59.866 47.619 0.00 0.00 0.00 3.56
2635 2876 1.132834 TGCATCATGTGTTCGGCAATC 59.867 47.619 0.00 0.00 0.00 2.67
2636 2877 1.132834 GCATCATGTGTTCGGCAATCA 59.867 47.619 0.00 0.00 0.00 2.57
2637 2878 2.223641 GCATCATGTGTTCGGCAATCAT 60.224 45.455 0.00 0.00 0.00 2.45
2638 2879 3.368495 CATCATGTGTTCGGCAATCATG 58.632 45.455 0.00 0.00 37.71 3.07
2656 2897 3.160585 CTGCTGGACAGGGTTCCA 58.839 61.111 1.01 0.00 43.83 3.53
2661 2902 3.815717 TGGACAGGGTTCCAGAGAT 57.184 52.632 0.00 0.00 41.00 2.75
2662 2903 2.044793 TGGACAGGGTTCCAGAGATT 57.955 50.000 0.00 0.00 41.00 2.40
2663 2904 3.199442 TGGACAGGGTTCCAGAGATTA 57.801 47.619 0.00 0.00 41.00 1.75
2664 2905 3.526899 TGGACAGGGTTCCAGAGATTAA 58.473 45.455 0.00 0.00 41.00 1.40
2665 2906 4.111577 TGGACAGGGTTCCAGAGATTAAT 58.888 43.478 0.00 0.00 41.00 1.40
2666 2907 4.080356 TGGACAGGGTTCCAGAGATTAATG 60.080 45.833 0.00 0.00 41.00 1.90
2667 2908 4.080299 GGACAGGGTTCCAGAGATTAATGT 60.080 45.833 0.00 0.00 35.49 2.71
2668 2909 5.104259 ACAGGGTTCCAGAGATTAATGTC 57.896 43.478 4.44 4.44 0.00 3.06
2669 2910 4.080299 ACAGGGTTCCAGAGATTAATGTCC 60.080 45.833 8.89 0.00 0.00 4.02
2670 2911 4.164988 CAGGGTTCCAGAGATTAATGTCCT 59.835 45.833 8.89 0.00 0.00 3.85
2671 2912 4.164988 AGGGTTCCAGAGATTAATGTCCTG 59.835 45.833 8.89 6.94 0.00 3.86
2672 2913 4.164221 GGGTTCCAGAGATTAATGTCCTGA 59.836 45.833 8.89 3.70 0.00 3.86
2673 2914 5.339200 GGGTTCCAGAGATTAATGTCCTGAA 60.339 44.000 8.89 9.05 0.00 3.02
2674 2915 6.180472 GGTTCCAGAGATTAATGTCCTGAAA 58.820 40.000 8.89 0.00 0.00 2.69
2675 2916 6.317391 GGTTCCAGAGATTAATGTCCTGAAAG 59.683 42.308 8.89 0.00 0.00 2.62
2676 2917 6.874278 TCCAGAGATTAATGTCCTGAAAGA 57.126 37.500 8.89 0.00 34.07 2.52
2677 2918 6.882656 TCCAGAGATTAATGTCCTGAAAGAG 58.117 40.000 8.89 0.00 34.07 2.85
2678 2919 6.669591 TCCAGAGATTAATGTCCTGAAAGAGA 59.330 38.462 8.89 0.00 34.07 3.10
2679 2920 6.985645 CCAGAGATTAATGTCCTGAAAGAGAG 59.014 42.308 8.89 0.00 34.07 3.20
2680 2921 7.147759 CCAGAGATTAATGTCCTGAAAGAGAGA 60.148 40.741 8.89 0.00 34.07 3.10
2681 2922 8.256605 CAGAGATTAATGTCCTGAAAGAGAGAA 58.743 37.037 8.89 0.00 34.07 2.87
2682 2923 8.820831 AGAGATTAATGTCCTGAAAGAGAGAAA 58.179 33.333 8.89 0.00 34.07 2.52
2683 2924 9.442047 GAGATTAATGTCCTGAAAGAGAGAAAA 57.558 33.333 1.09 0.00 34.07 2.29
2684 2925 9.799106 AGATTAATGTCCTGAAAGAGAGAAAAA 57.201 29.630 0.00 0.00 34.07 1.94
2689 2930 8.924511 ATGTCCTGAAAGAGAGAAAAATAACA 57.075 30.769 0.00 0.00 34.07 2.41
2690 2931 8.746052 TGTCCTGAAAGAGAGAAAAATAACAA 57.254 30.769 0.00 0.00 34.07 2.83
2691 2932 9.184523 TGTCCTGAAAGAGAGAAAAATAACAAA 57.815 29.630 0.00 0.00 34.07 2.83
2692 2933 9.670719 GTCCTGAAAGAGAGAAAAATAACAAAG 57.329 33.333 0.00 0.00 34.07 2.77
2693 2934 8.352942 TCCTGAAAGAGAGAAAAATAACAAAGC 58.647 33.333 0.00 0.00 34.07 3.51
2694 2935 8.137437 CCTGAAAGAGAGAAAAATAACAAAGCA 58.863 33.333 0.00 0.00 34.07 3.91
2695 2936 9.178427 CTGAAAGAGAGAAAAATAACAAAGCAG 57.822 33.333 0.00 0.00 34.07 4.24
2696 2937 8.137437 TGAAAGAGAGAAAAATAACAAAGCAGG 58.863 33.333 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.586344 TCTTTTATCTTAGCCACATCTCTGG 58.414 40.000 0.00 0.00 0.00 3.86
23 24 5.744171 TGTGAGCATCTTTTATCTTAGCCA 58.256 37.500 0.00 0.00 34.92 4.75
58 59 7.453752 CCCTATGGATTCCTCATCAAATCAAAT 59.546 37.037 3.95 0.00 34.28 2.32
123 125 4.722700 GCCACGGCCATGAGGTGT 62.723 66.667 0.00 0.00 37.19 4.16
1187 1284 8.522542 TTTTACCTTTCTTGGTACTTTAGCAA 57.477 30.769 0.00 0.00 41.75 3.91
1197 1294 7.855784 AAGATGGATTTTTACCTTTCTTGGT 57.144 32.000 0.00 0.00 43.66 3.67
1297 1399 2.038863 TCCCCCTTGAAGCAGTAAGA 57.961 50.000 0.00 0.00 0.00 2.10
1616 1823 1.185315 GGTGTGCCATTATGCTTGGT 58.815 50.000 0.00 0.00 36.57 3.67
1910 2126 3.895041 CCATGTACAAAGTTTCCCCAAGT 59.105 43.478 0.00 0.00 0.00 3.16
2306 2547 3.133464 CCCATGAACGCGGCATGT 61.133 61.111 29.59 7.31 41.11 3.21
2397 2638 9.948964 AAGGCTTTTATTGCATTCTTCTTTTAT 57.051 25.926 0.00 0.00 27.64 1.40
2399 2640 9.777297 TTAAGGCTTTTATTGCATTCTTCTTTT 57.223 25.926 4.45 0.00 35.94 2.27
2400 2641 9.948964 ATTAAGGCTTTTATTGCATTCTTCTTT 57.051 25.926 4.45 0.00 35.94 2.52
2401 2642 9.374838 CATTAAGGCTTTTATTGCATTCTTCTT 57.625 29.630 4.45 0.00 35.94 2.52
2402 2643 7.493645 GCATTAAGGCTTTTATTGCATTCTTCT 59.506 33.333 4.45 0.00 35.94 2.85
2403 2644 7.278424 TGCATTAAGGCTTTTATTGCATTCTTC 59.722 33.333 13.92 0.00 36.76 2.87
2404 2645 7.104939 TGCATTAAGGCTTTTATTGCATTCTT 58.895 30.769 13.92 0.00 36.76 2.52
2405 2646 6.642430 TGCATTAAGGCTTTTATTGCATTCT 58.358 32.000 13.92 0.00 36.76 2.40
2406 2647 6.907206 TGCATTAAGGCTTTTATTGCATTC 57.093 33.333 13.92 0.00 36.76 2.67
2407 2648 7.680113 GCATTGCATTAAGGCTTTTATTGCATT 60.680 33.333 20.74 17.02 42.51 3.56
2408 2649 6.238538 GCATTGCATTAAGGCTTTTATTGCAT 60.239 34.615 20.74 13.48 42.51 3.96
2409 2650 5.064962 GCATTGCATTAAGGCTTTTATTGCA 59.935 36.000 13.92 12.82 42.51 4.08
2410 2651 5.064962 TGCATTGCATTAAGGCTTTTATTGC 59.935 36.000 13.92 10.93 45.80 3.56
2411 2652 6.665474 TGCATTGCATTAAGGCTTTTATTG 57.335 33.333 13.92 1.28 45.80 1.90
2445 2686 6.927416 TCATTCTGCTCTAATGCATGTTTTT 58.073 32.000 0.00 0.00 42.48 1.94
2446 2687 6.519679 TCATTCTGCTCTAATGCATGTTTT 57.480 33.333 0.00 0.00 42.48 2.43
2447 2688 6.710597 ATCATTCTGCTCTAATGCATGTTT 57.289 33.333 0.00 0.00 42.48 2.83
2448 2689 6.769341 TGTATCATTCTGCTCTAATGCATGTT 59.231 34.615 0.00 0.00 42.48 2.71
2449 2690 6.293698 TGTATCATTCTGCTCTAATGCATGT 58.706 36.000 0.00 0.00 42.48 3.21
2450 2691 6.128254 CCTGTATCATTCTGCTCTAATGCATG 60.128 42.308 0.00 0.00 42.48 4.06
2451 2692 5.938710 CCTGTATCATTCTGCTCTAATGCAT 59.061 40.000 0.00 0.00 42.48 3.96
2452 2693 5.163269 ACCTGTATCATTCTGCTCTAATGCA 60.163 40.000 0.00 0.00 41.05 3.96
2453 2694 5.303971 ACCTGTATCATTCTGCTCTAATGC 58.696 41.667 0.00 0.00 34.89 3.56
2454 2695 7.598118 CACTACCTGTATCATTCTGCTCTAATG 59.402 40.741 0.00 0.00 35.98 1.90
2455 2696 7.665690 CACTACCTGTATCATTCTGCTCTAAT 58.334 38.462 0.00 0.00 0.00 1.73
2456 2697 6.461648 GCACTACCTGTATCATTCTGCTCTAA 60.462 42.308 0.00 0.00 0.00 2.10
2457 2698 5.010112 GCACTACCTGTATCATTCTGCTCTA 59.990 44.000 0.00 0.00 0.00 2.43
2458 2699 4.202202 GCACTACCTGTATCATTCTGCTCT 60.202 45.833 0.00 0.00 0.00 4.09
2459 2700 4.054671 GCACTACCTGTATCATTCTGCTC 58.945 47.826 0.00 0.00 0.00 4.26
2460 2701 3.491619 CGCACTACCTGTATCATTCTGCT 60.492 47.826 0.00 0.00 0.00 4.24
2461 2702 2.797156 CGCACTACCTGTATCATTCTGC 59.203 50.000 0.00 0.00 0.00 4.26
2462 2703 4.307443 TCGCACTACCTGTATCATTCTG 57.693 45.455 0.00 0.00 0.00 3.02
2463 2704 6.650427 TTATCGCACTACCTGTATCATTCT 57.350 37.500 0.00 0.00 0.00 2.40
2464 2705 5.346281 GCTTATCGCACTACCTGTATCATTC 59.654 44.000 0.00 0.00 38.92 2.67
2465 2706 5.221441 TGCTTATCGCACTACCTGTATCATT 60.221 40.000 0.00 0.00 45.47 2.57
2466 2707 4.280929 TGCTTATCGCACTACCTGTATCAT 59.719 41.667 0.00 0.00 45.47 2.45
2467 2708 3.634910 TGCTTATCGCACTACCTGTATCA 59.365 43.478 0.00 0.00 45.47 2.15
2468 2709 4.238761 TGCTTATCGCACTACCTGTATC 57.761 45.455 0.00 0.00 45.47 2.24
2480 2721 6.258068 ACATAGTCCTACTTTTTGCTTATCGC 59.742 38.462 0.00 0.00 39.77 4.58
2481 2722 7.772332 ACATAGTCCTACTTTTTGCTTATCG 57.228 36.000 0.00 0.00 0.00 2.92
2508 2749 1.378250 CTCAGCTTGCCCTTGGAGG 60.378 63.158 0.00 0.00 34.30 4.30
2509 2750 1.378250 CCTCAGCTTGCCCTTGGAG 60.378 63.158 0.00 0.00 0.00 3.86
2510 2751 1.426251 TTCCTCAGCTTGCCCTTGGA 61.426 55.000 0.00 0.00 0.00 3.53
2511 2752 0.324091 ATTCCTCAGCTTGCCCTTGG 60.324 55.000 0.00 0.00 0.00 3.61
2512 2753 2.425143 TATTCCTCAGCTTGCCCTTG 57.575 50.000 0.00 0.00 0.00 3.61
2513 2754 3.677156 ATTATTCCTCAGCTTGCCCTT 57.323 42.857 0.00 0.00 0.00 3.95
2514 2755 5.330648 AATATTATTCCTCAGCTTGCCCT 57.669 39.130 0.00 0.00 0.00 5.19
2515 2756 7.524717 TTTAATATTATTCCTCAGCTTGCCC 57.475 36.000 0.00 0.00 0.00 5.36
2516 2757 7.087007 GCTTTAATATTATTCCTCAGCTTGCC 58.913 38.462 0.00 0.00 0.00 4.52
2517 2758 7.651808 TGCTTTAATATTATTCCTCAGCTTGC 58.348 34.615 0.00 0.00 0.00 4.01
2518 2759 9.674824 CTTGCTTTAATATTATTCCTCAGCTTG 57.325 33.333 0.00 0.00 0.00 4.01
2519 2760 9.413734 ACTTGCTTTAATATTATTCCTCAGCTT 57.586 29.630 0.00 0.00 0.00 3.74
2520 2761 8.986929 ACTTGCTTTAATATTATTCCTCAGCT 57.013 30.769 0.00 0.00 0.00 4.24
2535 2776 8.377681 CGATAACGAGTGAAATACTTGCTTTAA 58.622 33.333 0.00 0.00 43.50 1.52
2536 2777 7.543172 ACGATAACGAGTGAAATACTTGCTTTA 59.457 33.333 0.00 0.00 43.50 1.85
2537 2778 6.367969 ACGATAACGAGTGAAATACTTGCTTT 59.632 34.615 0.00 0.00 43.50 3.51
2538 2779 5.867716 ACGATAACGAGTGAAATACTTGCTT 59.132 36.000 0.00 0.00 43.50 3.91
2539 2780 5.408356 ACGATAACGAGTGAAATACTTGCT 58.592 37.500 0.00 0.00 43.50 3.91
2540 2781 5.697848 ACGATAACGAGTGAAATACTTGC 57.302 39.130 0.00 0.00 43.50 4.01
2541 2782 8.477709 GGATTACGATAACGAGTGAAATACTTG 58.522 37.037 0.00 0.00 44.94 3.16
2542 2783 8.192774 TGGATTACGATAACGAGTGAAATACTT 58.807 33.333 0.00 0.00 40.53 2.24
2543 2784 7.646922 GTGGATTACGATAACGAGTGAAATACT 59.353 37.037 0.00 0.00 44.02 2.12
2544 2785 7.096312 GGTGGATTACGATAACGAGTGAAATAC 60.096 40.741 0.00 0.00 42.66 1.89
2545 2786 6.919662 GGTGGATTACGATAACGAGTGAAATA 59.080 38.462 0.00 0.00 42.66 1.40
2546 2787 5.751990 GGTGGATTACGATAACGAGTGAAAT 59.248 40.000 0.00 0.00 42.66 2.17
2547 2788 5.104374 GGTGGATTACGATAACGAGTGAAA 58.896 41.667 0.00 0.00 42.66 2.69
2548 2789 4.400251 AGGTGGATTACGATAACGAGTGAA 59.600 41.667 0.00 0.00 42.66 3.18
2549 2790 3.949754 AGGTGGATTACGATAACGAGTGA 59.050 43.478 0.00 0.00 42.66 3.41
2550 2791 4.042398 CAGGTGGATTACGATAACGAGTG 58.958 47.826 0.00 0.00 42.66 3.51
2551 2792 3.067742 CCAGGTGGATTACGATAACGAGT 59.932 47.826 0.00 0.00 39.21 4.18
2552 2793 3.552273 CCCAGGTGGATTACGATAACGAG 60.552 52.174 0.00 0.00 39.21 4.18
2553 2794 2.363038 CCCAGGTGGATTACGATAACGA 59.637 50.000 0.00 0.00 39.21 3.85
2554 2795 2.363038 TCCCAGGTGGATTACGATAACG 59.637 50.000 0.00 0.00 38.61 3.18
2555 2796 3.387050 ACTCCCAGGTGGATTACGATAAC 59.613 47.826 0.00 0.00 44.07 1.89
2556 2797 3.649843 ACTCCCAGGTGGATTACGATAA 58.350 45.455 0.00 0.00 44.07 1.75
2557 2798 3.323774 ACTCCCAGGTGGATTACGATA 57.676 47.619 0.00 0.00 44.07 2.92
2558 2799 2.176247 ACTCCCAGGTGGATTACGAT 57.824 50.000 0.00 0.00 44.07 3.73
2559 2800 1.829222 GAACTCCCAGGTGGATTACGA 59.171 52.381 0.00 0.00 44.07 3.43
2560 2801 1.134491 GGAACTCCCAGGTGGATTACG 60.134 57.143 0.00 0.00 44.07 3.18
2561 2802 2.711978 GGAACTCCCAGGTGGATTAC 57.288 55.000 0.00 0.00 44.07 1.89
2573 2814 0.693049 ACATCACACCAGGGAACTCC 59.307 55.000 0.00 0.00 40.21 3.85
2574 2815 2.678190 GCTACATCACACCAGGGAACTC 60.678 54.545 0.00 0.00 40.21 3.01
2575 2816 1.279271 GCTACATCACACCAGGGAACT 59.721 52.381 0.00 0.00 46.44 3.01
2576 2817 1.279271 AGCTACATCACACCAGGGAAC 59.721 52.381 0.00 0.00 0.00 3.62
2577 2818 1.656587 AGCTACATCACACCAGGGAA 58.343 50.000 0.00 0.00 0.00 3.97
2578 2819 1.656587 AAGCTACATCACACCAGGGA 58.343 50.000 0.00 0.00 0.00 4.20
2579 2820 2.026822 AGAAAGCTACATCACACCAGGG 60.027 50.000 0.00 0.00 0.00 4.45
2580 2821 3.005554 CAGAAAGCTACATCACACCAGG 58.994 50.000 0.00 0.00 0.00 4.45
2581 2822 2.417933 GCAGAAAGCTACATCACACCAG 59.582 50.000 0.00 0.00 41.15 4.00
2582 2823 2.426522 GCAGAAAGCTACATCACACCA 58.573 47.619 0.00 0.00 41.15 4.17
2583 2824 1.740025 GGCAGAAAGCTACATCACACC 59.260 52.381 0.00 0.00 44.79 4.16
2584 2825 2.675348 GAGGCAGAAAGCTACATCACAC 59.325 50.000 0.00 0.00 44.79 3.82
2585 2826 2.355108 GGAGGCAGAAAGCTACATCACA 60.355 50.000 0.00 0.00 44.79 3.58
2586 2827 2.093235 AGGAGGCAGAAAGCTACATCAC 60.093 50.000 0.00 0.00 44.79 3.06
2587 2828 2.191400 AGGAGGCAGAAAGCTACATCA 58.809 47.619 0.00 0.00 44.79 3.07
2588 2829 2.941720 CAAGGAGGCAGAAAGCTACATC 59.058 50.000 0.00 0.00 44.79 3.06
2589 2830 2.356535 CCAAGGAGGCAGAAAGCTACAT 60.357 50.000 0.00 0.00 44.79 2.29
2590 2831 1.003580 CCAAGGAGGCAGAAAGCTACA 59.996 52.381 0.00 0.00 44.79 2.74
2591 2832 1.003696 ACCAAGGAGGCAGAAAGCTAC 59.996 52.381 0.00 0.00 44.79 3.58
2592 2833 1.362224 ACCAAGGAGGCAGAAAGCTA 58.638 50.000 0.00 0.00 44.79 3.32
2593 2834 0.480252 AACCAAGGAGGCAGAAAGCT 59.520 50.000 0.00 0.00 44.79 3.74
2594 2835 0.600057 CAACCAAGGAGGCAGAAAGC 59.400 55.000 0.00 0.00 43.14 3.51
2595 2836 0.600057 GCAACCAAGGAGGCAGAAAG 59.400 55.000 0.00 0.00 43.14 2.62
2596 2837 0.185901 AGCAACCAAGGAGGCAGAAA 59.814 50.000 8.84 0.00 43.14 2.52
2597 2838 0.538057 CAGCAACCAAGGAGGCAGAA 60.538 55.000 8.84 0.00 43.14 3.02
2598 2839 1.073722 CAGCAACCAAGGAGGCAGA 59.926 57.895 8.84 0.00 43.14 4.26
2599 2840 2.633509 GCAGCAACCAAGGAGGCAG 61.634 63.158 8.84 3.16 43.14 4.85
2600 2841 2.598394 GCAGCAACCAAGGAGGCA 60.598 61.111 8.84 0.00 43.14 4.75
2601 2842 1.941999 GATGCAGCAACCAAGGAGGC 61.942 60.000 0.00 0.00 43.14 4.70
2602 2843 0.609957 TGATGCAGCAACCAAGGAGG 60.610 55.000 0.00 0.00 45.67 4.30
2603 2844 1.134367 CATGATGCAGCAACCAAGGAG 59.866 52.381 9.54 0.00 0.00 3.69
2604 2845 1.179152 CATGATGCAGCAACCAAGGA 58.821 50.000 9.54 0.00 0.00 3.36
2605 2846 0.892755 ACATGATGCAGCAACCAAGG 59.107 50.000 9.54 0.00 0.00 3.61
2606 2847 1.271379 ACACATGATGCAGCAACCAAG 59.729 47.619 9.54 0.00 0.00 3.61
2607 2848 1.330234 ACACATGATGCAGCAACCAA 58.670 45.000 9.54 0.00 0.00 3.67
2608 2849 1.270274 GAACACATGATGCAGCAACCA 59.730 47.619 9.54 0.50 0.00 3.67
2609 2850 1.730121 CGAACACATGATGCAGCAACC 60.730 52.381 9.54 0.00 0.00 3.77
2610 2851 1.609932 CGAACACATGATGCAGCAAC 58.390 50.000 9.54 0.00 0.00 4.17
2611 2852 0.522626 CCGAACACATGATGCAGCAA 59.477 50.000 9.54 0.00 0.00 3.91
2612 2853 1.925415 GCCGAACACATGATGCAGCA 61.925 55.000 7.31 7.31 0.00 4.41
2613 2854 1.226491 GCCGAACACATGATGCAGC 60.226 57.895 0.00 0.00 0.00 5.25
2614 2855 0.522626 TTGCCGAACACATGATGCAG 59.477 50.000 0.00 0.00 0.00 4.41
2615 2856 1.132834 GATTGCCGAACACATGATGCA 59.867 47.619 0.00 0.00 0.00 3.96
2616 2857 1.132834 TGATTGCCGAACACATGATGC 59.867 47.619 0.00 0.00 0.00 3.91
2617 2858 3.368495 CATGATTGCCGAACACATGATG 58.632 45.455 0.00 0.00 40.13 3.07
2618 2859 2.223641 GCATGATTGCCGAACACATGAT 60.224 45.455 0.00 0.00 43.38 2.45
2619 2860 1.132834 GCATGATTGCCGAACACATGA 59.867 47.619 0.00 0.00 43.38 3.07
2620 2861 1.552226 GCATGATTGCCGAACACATG 58.448 50.000 0.00 0.00 43.38 3.21
2631 2872 0.738975 CCTGTCCAGCAGCATGATTG 59.261 55.000 0.00 0.00 43.71 2.67
2632 2873 0.395311 CCCTGTCCAGCAGCATGATT 60.395 55.000 0.00 0.00 43.71 2.57
2633 2874 1.226542 CCCTGTCCAGCAGCATGAT 59.773 57.895 0.00 0.00 43.71 2.45
2634 2875 1.782201 AACCCTGTCCAGCAGCATGA 61.782 55.000 0.00 0.00 43.71 3.07
2635 2876 1.303888 AACCCTGTCCAGCAGCATG 60.304 57.895 0.00 0.00 43.71 4.06
2636 2877 1.001641 GAACCCTGTCCAGCAGCAT 60.002 57.895 0.00 0.00 43.71 3.79
2637 2878 2.431683 GAACCCTGTCCAGCAGCA 59.568 61.111 0.00 0.00 43.71 4.41
2638 2879 2.360475 GGAACCCTGTCCAGCAGC 60.360 66.667 0.00 0.00 43.71 5.25
2639 2880 3.160585 TGGAACCCTGTCCAGCAG 58.839 61.111 0.00 0.00 42.97 4.24
2643 2884 2.044793 AATCTCTGGAACCCTGTCCA 57.955 50.000 0.00 0.00 45.72 4.02
2644 2885 4.080299 ACATTAATCTCTGGAACCCTGTCC 60.080 45.833 0.00 0.00 38.27 4.02
2645 2886 5.104259 ACATTAATCTCTGGAACCCTGTC 57.896 43.478 0.00 0.00 0.00 3.51
2646 2887 4.080299 GGACATTAATCTCTGGAACCCTGT 60.080 45.833 0.00 0.00 0.00 4.00
2647 2888 4.164988 AGGACATTAATCTCTGGAACCCTG 59.835 45.833 0.00 0.00 0.00 4.45
2648 2889 4.164988 CAGGACATTAATCTCTGGAACCCT 59.835 45.833 0.00 0.00 0.00 4.34
2649 2890 4.164221 TCAGGACATTAATCTCTGGAACCC 59.836 45.833 8.48 0.00 0.00 4.11
2650 2891 5.359194 TCAGGACATTAATCTCTGGAACC 57.641 43.478 8.48 0.00 0.00 3.62
2651 2892 7.106239 TCTTTCAGGACATTAATCTCTGGAAC 58.894 38.462 8.48 0.00 0.00 3.62
2652 2893 7.180946 TCTCTTTCAGGACATTAATCTCTGGAA 59.819 37.037 8.48 6.25 0.00 3.53
2653 2894 6.669591 TCTCTTTCAGGACATTAATCTCTGGA 59.330 38.462 8.48 0.00 0.00 3.86
2654 2895 6.882656 TCTCTTTCAGGACATTAATCTCTGG 58.117 40.000 8.48 0.00 0.00 3.86
2655 2896 7.780064 TCTCTCTTTCAGGACATTAATCTCTG 58.220 38.462 0.00 0.00 0.00 3.35
2656 2897 7.969690 TCTCTCTTTCAGGACATTAATCTCT 57.030 36.000 0.00 0.00 0.00 3.10
2657 2898 9.442047 TTTTCTCTCTTTCAGGACATTAATCTC 57.558 33.333 0.00 0.00 0.00 2.75
2658 2899 9.799106 TTTTTCTCTCTTTCAGGACATTAATCT 57.201 29.630 0.00 0.00 0.00 2.40
2663 2904 9.354673 TGTTATTTTTCTCTCTTTCAGGACATT 57.645 29.630 0.00 0.00 0.00 2.71
2664 2905 8.924511 TGTTATTTTTCTCTCTTTCAGGACAT 57.075 30.769 0.00 0.00 0.00 3.06
2665 2906 8.746052 TTGTTATTTTTCTCTCTTTCAGGACA 57.254 30.769 0.00 0.00 0.00 4.02
2666 2907 9.670719 CTTTGTTATTTTTCTCTCTTTCAGGAC 57.329 33.333 0.00 0.00 0.00 3.85
2667 2908 8.352942 GCTTTGTTATTTTTCTCTCTTTCAGGA 58.647 33.333 0.00 0.00 0.00 3.86
2668 2909 8.137437 TGCTTTGTTATTTTTCTCTCTTTCAGG 58.863 33.333 0.00 0.00 0.00 3.86
2669 2910 9.178427 CTGCTTTGTTATTTTTCTCTCTTTCAG 57.822 33.333 0.00 0.00 0.00 3.02
2670 2911 8.137437 CCTGCTTTGTTATTTTTCTCTCTTTCA 58.863 33.333 0.00 0.00 0.00 2.69
2671 2912 8.512800 CCTGCTTTGTTATTTTTCTCTCTTTC 57.487 34.615 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.