Multiple sequence alignment - TraesCS7A01G398000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G398000 chr7A 100.000 2941 0 0 515 3455 577205633 577208573 0.000000e+00 5432.0
1 TraesCS7A01G398000 chr7A 100.000 298 0 0 1 298 577205119 577205416 5.040000e-153 551.0
2 TraesCS7A01G398000 chr7A 88.679 159 18 0 1233 1391 575099726 575099884 9.780000e-46 195.0
3 TraesCS7A01G398000 chr7A 88.608 158 16 2 1234 1390 574684747 574684903 1.270000e-44 191.0
4 TraesCS7A01G398000 chr7A 90.741 54 5 0 1026 1079 102290377 102290324 4.780000e-09 73.1
5 TraesCS7A01G398000 chr7D 91.328 1499 97 19 697 2183 507302383 507303860 0.000000e+00 2017.0
6 TraesCS7A01G398000 chr7D 89.474 285 21 4 2278 2561 507303942 507304218 5.490000e-93 351.0
7 TraesCS7A01G398000 chr7D 96.842 190 4 2 1 188 507248602 507248791 2.000000e-82 316.0
8 TraesCS7A01G398000 chr7D 84.946 279 25 10 2548 2823 507304241 507304505 2.040000e-67 267.0
9 TraesCS7A01G398000 chr7D 78.027 446 71 24 1234 1671 506818026 506818452 4.430000e-64 255.0
10 TraesCS7A01G398000 chr7D 85.897 234 19 8 3224 3453 507304497 507304720 1.600000e-58 237.0
11 TraesCS7A01G398000 chr7D 91.824 159 13 0 1233 1391 507230607 507230765 4.490000e-54 222.0
12 TraesCS7A01G398000 chr7D 90.909 165 14 1 1234 1398 506901486 506901649 1.610000e-53 220.0
13 TraesCS7A01G398000 chr7D 90.741 54 5 0 1026 1079 99824213 99824160 4.780000e-09 73.1
14 TraesCS7A01G398000 chr7B 87.424 1821 144 54 982 2789 535697427 535699175 0.000000e+00 2015.0
15 TraesCS7A01G398000 chr7B 91.259 286 13 4 1 286 535696460 535696733 2.520000e-101 379.0
16 TraesCS7A01G398000 chr7B 90.625 192 12 3 755 946 535697238 535697423 2.060000e-62 250.0
17 TraesCS7A01G398000 chr7B 76.718 451 83 19 1234 1671 535491605 535492046 7.460000e-57 231.0
18 TraesCS7A01G398000 chr7B 90.506 158 15 0 1234 1391 535636774 535636931 3.490000e-50 209.0
19 TraesCS7A01G398000 chr7B 84.496 129 15 4 3325 3452 535817478 535817602 4.680000e-24 122.0
20 TraesCS7A01G398000 chr7B 90.741 54 5 0 1026 1079 55067097 55067044 4.780000e-09 73.1
21 TraesCS7A01G398000 chr7B 88.889 54 6 0 1026 1079 55035843 55035790 2.230000e-07 67.6
22 TraesCS7A01G398000 chr2A 87.931 406 33 6 2832 3223 616070782 616070379 6.750000e-127 464.0
23 TraesCS7A01G398000 chr1D 84.051 395 56 4 2832 3222 430229431 430229822 1.170000e-99 374.0
24 TraesCS7A01G398000 chr6D 86.747 332 40 2 2832 3161 5591934 5592263 1.960000e-97 366.0
25 TraesCS7A01G398000 chr4A 84.751 341 49 3 2832 3169 698309962 698310302 4.270000e-89 339.0
26 TraesCS7A01G398000 chr6B 84.211 342 44 3 2832 3171 3632584 3632917 1.200000e-84 324.0
27 TraesCS7A01G398000 chr5B 82.025 395 58 8 2832 3222 22759675 22759290 1.200000e-84 324.0
28 TraesCS7A01G398000 chr3B 94.068 118 4 3 2609 2723 44755861 44755744 3.540000e-40 176.0
29 TraesCS7A01G398000 chr3B 94.340 106 4 2 2614 2719 44812768 44812871 9.920000e-36 161.0
30 TraesCS7A01G398000 chr3B 94.340 106 4 2 2614 2719 44842233 44842336 9.920000e-36 161.0
31 TraesCS7A01G398000 chr3D 95.283 106 2 3 2614 2719 26592045 26592147 7.670000e-37 165.0
32 TraesCS7A01G398000 chr3D 93.458 107 3 3 2615 2719 542224494 542224390 4.620000e-34 156.0
33 TraesCS7A01G398000 chr3A 92.920 113 3 4 2614 2722 36649512 36649623 3.570000e-35 159.0
34 TraesCS7A01G398000 chr3A 93.519 108 2 3 2615 2719 678383213 678383108 4.620000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G398000 chr7A 577205119 577208573 3454 False 2991.500000 5432 100.000000 1 3455 2 chr7A.!!$F3 3454
1 TraesCS7A01G398000 chr7D 507302383 507304720 2337 False 718.000000 2017 87.911250 697 3453 4 chr7D.!!$F5 2756
2 TraesCS7A01G398000 chr7B 535696460 535699175 2715 False 881.333333 2015 89.769333 1 2789 3 chr7B.!!$F4 2788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.249447 TCGGAACATGCTATGCCGAG 60.249 55.0 0.00 0.0 45.18 4.63 F
1136 1421 0.109597 GTTCGCGACCTCGGTAAGAA 60.110 55.0 9.15 0.0 40.23 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1751 0.322975 AGCACATGAGAGGTCACCAC 59.677 55.0 0.0 0.0 34.75 4.16 R
2719 3075 0.040067 GGCAAAGAGGTTCAACGCAG 60.040 55.0 0.0 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.953559 TTCTCGGAACATGCTATGCC 58.046 50.000 0.00 0.00 0.00 4.40
24 25 0.249447 TCGGAACATGCTATGCCGAG 60.249 55.000 0.00 0.00 45.18 4.63
138 139 4.119862 GGTATTCACTGCGCATTTCTCTA 58.880 43.478 12.24 0.00 0.00 2.43
172 173 5.474825 TGAAGTGCTGTAATCATGTTCGTA 58.525 37.500 0.00 0.00 0.00 3.43
173 174 5.576774 TGAAGTGCTGTAATCATGTTCGTAG 59.423 40.000 0.00 0.00 0.00 3.51
174 175 3.865745 AGTGCTGTAATCATGTTCGTAGC 59.134 43.478 0.00 0.01 0.00 3.58
175 176 3.616821 GTGCTGTAATCATGTTCGTAGCA 59.383 43.478 10.88 10.88 37.56 3.49
176 177 4.271049 GTGCTGTAATCATGTTCGTAGCAT 59.729 41.667 15.60 0.00 41.31 3.79
177 178 4.507756 TGCTGTAATCATGTTCGTAGCATC 59.492 41.667 10.88 0.00 35.27 3.91
178 179 4.507756 GCTGTAATCATGTTCGTAGCATCA 59.492 41.667 0.00 0.00 0.00 3.07
179 180 5.332883 GCTGTAATCATGTTCGTAGCATCAG 60.333 44.000 0.00 0.00 0.00 2.90
180 181 5.660460 TGTAATCATGTTCGTAGCATCAGT 58.340 37.500 0.00 0.00 0.00 3.41
181 182 6.106003 TGTAATCATGTTCGTAGCATCAGTT 58.894 36.000 0.00 0.00 0.00 3.16
182 183 6.593770 TGTAATCATGTTCGTAGCATCAGTTT 59.406 34.615 0.00 0.00 0.00 2.66
187 188 4.123506 TGTTCGTAGCATCAGTTTCAACA 58.876 39.130 0.00 0.00 0.00 3.33
191 192 1.238439 AGCATCAGTTTCAACACGGG 58.762 50.000 0.00 0.00 0.00 5.28
197 198 1.106944 AGTTTCAACACGGGCCCTTG 61.107 55.000 26.13 26.13 0.00 3.61
552 553 1.618343 ACCGGCTGCTTAGCAATTTTT 59.382 42.857 8.68 0.00 38.41 1.94
574 575 3.916761 TGCTGGAAACAAAATGATGAGC 58.083 40.909 0.00 0.00 42.06 4.26
585 586 0.463204 ATGATGAGCCGAGACCTGTG 59.537 55.000 0.00 0.00 0.00 3.66
586 587 1.520342 GATGAGCCGAGACCTGTGC 60.520 63.158 0.00 0.00 0.00 4.57
592 593 1.878656 GCCGAGACCTGTGCACTAGT 61.879 60.000 19.41 15.02 0.00 2.57
595 596 1.000163 CGAGACCTGTGCACTAGTGTT 60.000 52.381 23.44 5.86 0.00 3.32
601 602 5.296035 AGACCTGTGCACTAGTGTTAAAAAC 59.704 40.000 23.44 12.59 0.00 2.43
602 603 4.944930 ACCTGTGCACTAGTGTTAAAAACA 59.055 37.500 23.44 15.77 39.52 2.83
625 626 7.837863 ACACTACTATATTATGGAACGGATGG 58.162 38.462 0.00 0.00 0.00 3.51
629 630 9.404848 CTACTATATTATGGAACGGATGGAGTA 57.595 37.037 0.00 0.00 0.00 2.59
631 632 8.915036 ACTATATTATGGAACGGATGGAGTATC 58.085 37.037 0.00 0.00 34.93 2.24
633 634 6.688073 ATTATGGAACGGATGGAGTATCTT 57.312 37.500 0.00 0.00 36.03 2.40
634 635 4.608948 ATGGAACGGATGGAGTATCTTC 57.391 45.455 0.00 0.00 36.03 2.87
635 636 3.371034 TGGAACGGATGGAGTATCTTCA 58.629 45.455 0.00 0.00 36.03 3.02
637 638 4.039245 TGGAACGGATGGAGTATCTTCATC 59.961 45.833 8.95 8.95 43.70 2.92
648 649 7.244558 TGGAGTATCTTCATCCATCAGATAGT 58.755 38.462 0.00 0.00 38.19 2.12
654 655 6.685657 TCTTCATCCATCAGATAGTCAATCG 58.314 40.000 0.00 0.00 39.79 3.34
655 656 6.266330 TCTTCATCCATCAGATAGTCAATCGT 59.734 38.462 0.00 0.00 39.79 3.73
656 657 6.410942 TCATCCATCAGATAGTCAATCGTT 57.589 37.500 0.00 0.00 39.79 3.85
657 658 6.450545 TCATCCATCAGATAGTCAATCGTTC 58.549 40.000 0.00 0.00 39.79 3.95
658 659 5.852282 TCCATCAGATAGTCAATCGTTCA 57.148 39.130 0.00 0.00 39.79 3.18
659 660 6.410942 TCCATCAGATAGTCAATCGTTCAT 57.589 37.500 0.00 0.00 39.79 2.57
661 662 5.107182 CCATCAGATAGTCAATCGTTCATGC 60.107 44.000 0.00 0.00 39.79 4.06
662 663 5.009854 TCAGATAGTCAATCGTTCATGCA 57.990 39.130 0.00 0.00 39.79 3.96
663 664 5.604565 TCAGATAGTCAATCGTTCATGCAT 58.395 37.500 0.00 0.00 39.79 3.96
664 665 5.693555 TCAGATAGTCAATCGTTCATGCATC 59.306 40.000 0.00 0.00 39.79 3.91
665 666 4.683320 AGATAGTCAATCGTTCATGCATCG 59.317 41.667 0.00 0.00 39.79 3.84
666 667 2.621338 AGTCAATCGTTCATGCATCGT 58.379 42.857 0.00 0.00 0.00 3.73
667 668 2.349580 AGTCAATCGTTCATGCATCGTG 59.650 45.455 0.00 0.00 0.00 4.35
668 669 1.062440 TCAATCGTTCATGCATCGTGC 59.938 47.619 0.00 3.44 45.29 5.34
678 679 3.576356 CATCGTGCATGGCGGGTC 61.576 66.667 5.98 0.00 0.00 4.46
724 725 3.745975 TCTTTGCCGTGATACAGTTTCTG 59.254 43.478 0.00 0.00 37.52 3.02
732 733 4.559251 CGTGATACAGTTTCTGCACTAGAC 59.441 45.833 0.00 0.00 34.43 2.59
742 743 5.868043 TTCTGCACTAGACAAACATCATG 57.132 39.130 0.00 0.00 34.43 3.07
805 1089 3.782244 GGCGTGTCTTGCTCTGCG 61.782 66.667 0.00 0.00 0.00 5.18
819 1103 3.241530 TGCGGCCTGAGTTGGACT 61.242 61.111 0.00 0.00 31.45 3.85
840 1124 2.380410 CGCGCCACACTTGTCCTAC 61.380 63.158 0.00 0.00 0.00 3.18
989 1273 1.734047 CGAGAGCACGAGGAGAAAAGG 60.734 57.143 0.00 0.00 35.09 3.11
1136 1421 0.109597 GTTCGCGACCTCGGTAAGAA 60.110 55.000 9.15 0.00 40.23 2.52
1140 1425 1.356938 GCGACCTCGGTAAGAAAAGG 58.643 55.000 0.00 0.00 40.23 3.11
1155 1440 2.826702 AGGTCGACGCCACCTTTT 59.173 55.556 9.92 0.00 41.95 2.27
1156 1441 1.301479 AGGTCGACGCCACCTTTTC 60.301 57.895 9.92 0.00 41.95 2.29
1157 1442 1.301479 GGTCGACGCCACCTTTTCT 60.301 57.895 9.92 0.00 0.00 2.52
1382 1668 2.035783 GACAAGCCCCAGAACCCC 59.964 66.667 0.00 0.00 0.00 4.95
1417 1703 5.183904 AGCAGTACCATTTTTCATCAGGAAC 59.816 40.000 0.00 0.00 34.56 3.62
1459 1751 5.017484 TCATCGAATTTGTTGTTCTGTCG 57.983 39.130 0.00 0.00 0.00 4.35
1577 1869 4.634133 GTCGTGGTGTCGTCGGCA 62.634 66.667 0.00 0.00 0.00 5.69
1664 1956 1.961277 GGACCACTGCAGAACCACG 60.961 63.158 23.35 2.92 0.00 4.94
1685 1977 1.342374 GGGGTGGCATCCATTCTCTTT 60.342 52.381 20.42 0.00 35.28 2.52
1693 1985 4.321974 GGCATCCATTCTCTTTTCCGTTTT 60.322 41.667 0.00 0.00 0.00 2.43
1698 1990 6.868622 TCCATTCTCTTTTCCGTTTTCAAAA 58.131 32.000 0.00 0.00 0.00 2.44
1699 1991 7.496747 TCCATTCTCTTTTCCGTTTTCAAAAT 58.503 30.769 0.00 0.00 0.00 1.82
1700 1992 7.651704 TCCATTCTCTTTTCCGTTTTCAAAATC 59.348 33.333 0.00 0.00 0.00 2.17
1704 1996 8.764524 TCTCTTTTCCGTTTTCAAAATCAAAA 57.235 26.923 0.00 0.00 0.00 2.44
1706 1998 9.636965 CTCTTTTCCGTTTTCAAAATCAAAATC 57.363 29.630 0.00 0.00 0.00 2.17
1707 1999 8.608317 TCTTTTCCGTTTTCAAAATCAAAATCC 58.392 29.630 0.00 0.00 0.00 3.01
1708 2000 8.499403 TTTTCCGTTTTCAAAATCAAAATCCT 57.501 26.923 0.00 0.00 0.00 3.24
1709 2001 9.601217 TTTTCCGTTTTCAAAATCAAAATCCTA 57.399 25.926 0.00 0.00 0.00 2.94
1710 2002 9.771534 TTTCCGTTTTCAAAATCAAAATCCTAT 57.228 25.926 0.00 0.00 0.00 2.57
1713 2005 9.855021 CCGTTTTCAAAATCAAAATCCTATAGT 57.145 29.630 0.00 0.00 0.00 2.12
1742 2034 5.916661 CCTATGTAGTAGGTGTCAGTTGT 57.083 43.478 0.00 0.00 44.30 3.32
1749 2041 2.604046 AGGTGTCAGTTGTCACTCAC 57.396 50.000 8.87 0.00 35.10 3.51
1753 2045 2.609459 GTGTCAGTTGTCACTCACCTTG 59.391 50.000 2.88 0.00 32.65 3.61
1763 2056 3.184581 GTCACTCACCTTGTGTCGATTTC 59.815 47.826 0.00 0.00 36.83 2.17
1807 2100 1.079543 CTCCAAGACACTGGCCGAG 60.080 63.158 0.00 0.00 36.32 4.63
1840 2133 3.122250 CTACGCCGAGAAGACCGGG 62.122 68.421 6.32 0.00 46.55 5.73
1943 2236 1.035139 CAACCTGCTCAAAGGCAAGT 58.965 50.000 0.00 0.00 41.46 3.16
1971 2264 1.274596 CGGTGTGCCTTATCGTGTAC 58.725 55.000 0.00 0.00 0.00 2.90
1972 2265 1.135199 CGGTGTGCCTTATCGTGTACT 60.135 52.381 0.00 0.00 0.00 2.73
1973 2266 2.537401 GGTGTGCCTTATCGTGTACTC 58.463 52.381 0.00 0.00 0.00 2.59
1974 2267 2.537401 GTGTGCCTTATCGTGTACTCC 58.463 52.381 0.00 0.00 0.00 3.85
2160 2458 2.278336 TACATCTGCGGCGCGTAC 60.278 61.111 28.09 0.51 0.00 3.67
2183 2481 3.499918 CGAAAGAAGCTGTCTGAAATGGT 59.500 43.478 0.00 0.00 36.40 3.55
2186 2484 2.300152 AGAAGCTGTCTGAAATGGTCGA 59.700 45.455 0.00 0.00 34.29 4.20
2220 2518 3.707793 CTTCTATCCAGACCTTACACGC 58.292 50.000 0.00 0.00 0.00 5.34
2234 2532 0.690762 ACACGCCCCATGAAGTAAGT 59.309 50.000 0.00 0.00 0.00 2.24
2236 2534 2.303600 ACACGCCCCATGAAGTAAGTAA 59.696 45.455 0.00 0.00 0.00 2.24
2238 2536 2.835764 ACGCCCCATGAAGTAAGTAAGA 59.164 45.455 0.00 0.00 0.00 2.10
2240 2538 3.621715 CGCCCCATGAAGTAAGTAAGAAC 59.378 47.826 0.00 0.00 0.00 3.01
2241 2539 3.621715 GCCCCATGAAGTAAGTAAGAACG 59.378 47.826 0.00 0.00 0.00 3.95
2245 2543 4.330074 CCATGAAGTAAGTAAGAACGCAGG 59.670 45.833 0.00 0.00 0.00 4.85
2267 2565 5.171476 GGAGTACATAACTGCATATGCGAT 58.829 41.667 22.21 13.10 45.40 4.58
2282 2580 2.191354 GCGATCAGCTTGCAGTTGCA 62.191 55.000 2.03 2.03 45.83 4.08
2322 2632 2.555227 CCAGGAGGTTATGTGCAGGTTT 60.555 50.000 0.00 0.00 0.00 3.27
2337 2647 2.887152 CAGGTTTGTTGAAGGGGAAGAG 59.113 50.000 0.00 0.00 0.00 2.85
2340 2650 3.562182 GTTTGTTGAAGGGGAAGAGGAA 58.438 45.455 0.00 0.00 0.00 3.36
2360 2673 3.842007 AAGGATGATGAGCTCCAAGAG 57.158 47.619 12.15 0.00 33.75 2.85
2385 2698 3.365265 GCGCTGGGGTGGAAGTTG 61.365 66.667 0.00 0.00 0.00 3.16
2424 2737 3.432588 AGGGACAGCGTCGAGTCG 61.433 66.667 6.09 6.09 35.63 4.18
2465 2778 2.183046 GGAGTGAGCGGCTGAGAC 59.817 66.667 7.50 0.80 0.00 3.36
2473 2786 1.743252 GCGGCTGAGACCTTCTTGG 60.743 63.158 0.00 0.00 42.93 3.61
2477 2790 1.625818 GGCTGAGACCTTCTTGGAGAA 59.374 52.381 0.00 0.00 39.71 2.87
2520 2838 1.269413 ACTGAAGGACGGTGTGTTACG 60.269 52.381 0.00 0.00 36.66 3.18
2522 2840 1.136695 TGAAGGACGGTGTGTTACGTT 59.863 47.619 0.00 0.00 44.24 3.99
2523 2841 2.360483 TGAAGGACGGTGTGTTACGTTA 59.640 45.455 0.00 0.00 44.24 3.18
2524 2842 2.422276 AGGACGGTGTGTTACGTTAC 57.578 50.000 0.00 0.00 44.24 2.50
2610 2964 7.147983 TGGAAGGCAACGTAGCAAATTAATAAT 60.148 33.333 0.00 0.00 46.39 1.28
2719 3075 1.741770 AACTCGGCCATCTTGACGC 60.742 57.895 2.24 0.00 0.00 5.19
2726 3082 1.133253 CCATCTTGACGCTGCGTTG 59.867 57.895 29.54 21.33 41.37 4.10
2728 3084 0.512518 CATCTTGACGCTGCGTTGAA 59.487 50.000 29.54 21.79 41.37 2.69
2730 3086 1.082756 CTTGACGCTGCGTTGAACC 60.083 57.895 29.54 16.06 41.37 3.62
2745 3101 2.054799 TGAACCTCTTTGCCAGTACCT 58.945 47.619 0.00 0.00 0.00 3.08
2754 3110 6.385649 TCTTTGCCAGTACCTTTTTAACTG 57.614 37.500 0.00 0.00 40.24 3.16
2785 3141 3.458163 TCGCTACCTCTTGGGCCG 61.458 66.667 0.00 0.00 39.10 6.13
2789 3145 1.517832 CTACCTCTTGGGCCGTCAG 59.482 63.158 0.00 0.00 39.10 3.51
2791 3147 4.020617 CCTCTTGGGCCGTCAGCA 62.021 66.667 0.00 0.00 46.50 4.41
2798 3154 3.503363 GGCCGTCAGCACATCTGC 61.503 66.667 0.00 0.00 46.50 4.26
2799 3155 2.743538 GCCGTCAGCACATCTGCA 60.744 61.111 0.00 0.00 46.97 4.41
2800 3156 2.327343 GCCGTCAGCACATCTGCAA 61.327 57.895 0.00 0.00 46.97 4.08
2809 3165 4.082949 TCAGCACATCTGCAAAGAGAATTG 60.083 41.667 0.00 0.00 46.97 2.32
2826 3182 4.699522 GGGACACCAGGCACGGAC 62.700 72.222 0.00 0.00 36.50 4.79
2833 3189 4.436998 CAGGCACGGACGGGACTC 62.437 72.222 0.00 0.00 32.24 3.36
2834 3190 4.680537 AGGCACGGACGGGACTCT 62.681 66.667 0.00 0.00 23.26 3.24
2835 3191 4.131088 GGCACGGACGGGACTCTC 62.131 72.222 0.00 0.00 0.00 3.20
2836 3192 4.477975 GCACGGACGGGACTCTCG 62.478 72.222 0.00 0.00 0.00 4.04
2837 3193 3.812019 CACGGACGGGACTCTCGG 61.812 72.222 2.78 0.00 0.00 4.63
2840 3196 2.679287 GGACGGGACTCTCGGGTT 60.679 66.667 2.78 0.00 0.00 4.11
2841 3197 2.708865 GGACGGGACTCTCGGGTTC 61.709 68.421 2.78 0.00 0.00 3.62
2842 3198 2.679287 ACGGGACTCTCGGGTTCC 60.679 66.667 2.78 0.00 0.00 3.62
2853 3209 3.857038 GGGTTCCGGCGCATCCTA 61.857 66.667 10.83 0.00 0.00 2.94
2854 3210 2.426023 GGTTCCGGCGCATCCTAT 59.574 61.111 10.83 0.00 0.00 2.57
2855 3211 1.669440 GGTTCCGGCGCATCCTATA 59.331 57.895 10.83 0.00 0.00 1.31
2856 3212 0.249398 GGTTCCGGCGCATCCTATAT 59.751 55.000 10.83 0.00 0.00 0.86
2857 3213 1.359848 GTTCCGGCGCATCCTATATG 58.640 55.000 10.83 0.00 0.00 1.78
2858 3214 0.391130 TTCCGGCGCATCCTATATGC 60.391 55.000 10.83 0.00 41.35 3.14
2866 3222 3.641437 GCATCCTATATGCGCCAAAAA 57.359 42.857 4.18 0.00 35.17 1.94
2982 3338 7.502120 AGAAATGATTCATATTGACTTCGGG 57.498 36.000 0.00 0.00 38.06 5.14
2983 3339 6.488006 AGAAATGATTCATATTGACTTCGGGG 59.512 38.462 0.00 0.00 38.06 5.73
2984 3340 3.476552 TGATTCATATTGACTTCGGGGC 58.523 45.455 0.00 0.00 0.00 5.80
2985 3341 3.118075 TGATTCATATTGACTTCGGGGCA 60.118 43.478 0.00 0.00 0.00 5.36
3015 3371 8.480643 AGACAAGTTTATGACAACAGTATAGC 57.519 34.615 0.00 0.00 0.00 2.97
3016 3372 7.275779 AGACAAGTTTATGACAACAGTATAGCG 59.724 37.037 0.00 0.00 0.00 4.26
3017 3373 6.312918 ACAAGTTTATGACAACAGTATAGCGG 59.687 38.462 0.00 0.00 0.00 5.52
3018 3374 5.357257 AGTTTATGACAACAGTATAGCGGG 58.643 41.667 0.00 0.00 0.00 6.13
3019 3375 5.105064 AGTTTATGACAACAGTATAGCGGGT 60.105 40.000 0.00 0.00 0.00 5.28
3020 3376 6.097270 AGTTTATGACAACAGTATAGCGGGTA 59.903 38.462 0.00 0.00 0.00 3.69
3021 3377 6.659745 TTATGACAACAGTATAGCGGGTAT 57.340 37.500 4.95 4.95 0.00 2.73
3022 3378 7.764141 TTATGACAACAGTATAGCGGGTATA 57.236 36.000 2.91 2.91 0.00 1.47
3023 3379 5.700722 TGACAACAGTATAGCGGGTATAG 57.299 43.478 7.15 0.45 0.00 1.31
3024 3380 5.135383 TGACAACAGTATAGCGGGTATAGT 58.865 41.667 7.15 7.82 0.00 2.12
3025 3381 6.298361 TGACAACAGTATAGCGGGTATAGTA 58.702 40.000 12.77 0.00 0.00 1.82
3026 3382 6.205464 TGACAACAGTATAGCGGGTATAGTAC 59.795 42.308 12.77 3.06 0.00 2.73
3027 3383 6.302269 ACAACAGTATAGCGGGTATAGTACT 58.698 40.000 12.77 0.00 0.00 2.73
3028 3384 6.774656 ACAACAGTATAGCGGGTATAGTACTT 59.225 38.462 12.77 6.38 0.00 2.24
3029 3385 6.814506 ACAGTATAGCGGGTATAGTACTTG 57.185 41.667 12.77 5.33 0.00 3.16
3030 3386 6.302269 ACAGTATAGCGGGTATAGTACTTGT 58.698 40.000 12.77 5.84 0.00 3.16
3031 3387 7.453393 ACAGTATAGCGGGTATAGTACTTGTA 58.547 38.462 12.77 0.00 0.00 2.41
3032 3388 8.105829 ACAGTATAGCGGGTATAGTACTTGTAT 58.894 37.037 12.77 0.00 0.00 2.29
3033 3389 9.605275 CAGTATAGCGGGTATAGTACTTGTATA 57.395 37.037 12.77 0.00 0.00 1.47
3038 3394 8.961294 AGCGGGTATAGTACTTGTATATAGAG 57.039 38.462 0.00 0.00 0.00 2.43
3039 3395 8.547173 AGCGGGTATAGTACTTGTATATAGAGT 58.453 37.037 0.00 4.59 0.00 3.24
3040 3396 9.171877 GCGGGTATAGTACTTGTATATAGAGTT 57.828 37.037 0.00 0.00 0.00 3.01
3059 3415 0.747852 TTTTTGCCGACCCTTCAACC 59.252 50.000 0.00 0.00 0.00 3.77
3060 3416 1.110518 TTTTGCCGACCCTTCAACCC 61.111 55.000 0.00 0.00 0.00 4.11
3061 3417 2.285889 TTTGCCGACCCTTCAACCCA 62.286 55.000 0.00 0.00 0.00 4.51
3062 3418 2.359975 GCCGACCCTTCAACCCAG 60.360 66.667 0.00 0.00 0.00 4.45
3063 3419 2.351276 CCGACCCTTCAACCCAGG 59.649 66.667 0.00 0.00 0.00 4.45
3064 3420 2.221299 CCGACCCTTCAACCCAGGA 61.221 63.158 0.00 0.00 32.41 3.86
3065 3421 1.562672 CCGACCCTTCAACCCAGGAT 61.563 60.000 0.00 0.00 32.41 3.24
3066 3422 0.392998 CGACCCTTCAACCCAGGATG 60.393 60.000 0.00 0.00 32.41 3.51
3067 3423 0.681243 GACCCTTCAACCCAGGATGC 60.681 60.000 0.00 0.00 32.41 3.91
3068 3424 1.383799 CCCTTCAACCCAGGATGCA 59.616 57.895 0.00 0.00 32.41 3.96
3069 3425 0.251742 CCCTTCAACCCAGGATGCAA 60.252 55.000 0.00 0.00 32.41 4.08
3070 3426 0.890683 CCTTCAACCCAGGATGCAAC 59.109 55.000 0.00 0.00 32.41 4.17
3071 3427 0.523072 CTTCAACCCAGGATGCAACG 59.477 55.000 0.00 0.00 31.97 4.10
3072 3428 0.109532 TTCAACCCAGGATGCAACGA 59.890 50.000 0.00 0.00 31.97 3.85
3073 3429 0.109532 TCAACCCAGGATGCAACGAA 59.890 50.000 0.00 0.00 31.97 3.85
3074 3430 0.958091 CAACCCAGGATGCAACGAAA 59.042 50.000 0.00 0.00 31.97 3.46
3075 3431 1.068333 CAACCCAGGATGCAACGAAAG 60.068 52.381 0.00 0.00 31.97 2.62
3076 3432 0.110486 ACCCAGGATGCAACGAAAGT 59.890 50.000 0.00 0.00 40.81 2.66
3077 3433 0.804989 CCCAGGATGCAACGAAAGTC 59.195 55.000 0.00 0.00 38.18 3.01
3078 3434 1.522668 CCAGGATGCAACGAAAGTCA 58.477 50.000 0.00 0.00 38.18 3.41
3079 3435 2.086869 CCAGGATGCAACGAAAGTCAT 58.913 47.619 0.00 0.00 38.18 3.06
3080 3436 2.489329 CCAGGATGCAACGAAAGTCATT 59.511 45.455 0.00 0.00 38.18 2.57
3081 3437 3.426695 CCAGGATGCAACGAAAGTCATTC 60.427 47.826 0.00 0.00 38.18 2.67
3082 3438 5.634282 CCAGGATGCAACGAAAGTCATTCT 61.634 45.833 0.00 0.00 38.18 2.40
3083 3439 7.055546 CCAGGATGCAACGAAAGTCATTCTT 62.056 44.000 0.00 0.00 38.18 2.52
3084 3440 8.746623 CCAGGATGCAACGAAAGTCATTCTTC 62.747 46.154 0.00 0.00 38.18 2.87
3091 3447 5.924475 ACGAAAGTCATTCTTCAACGAAT 57.076 34.783 0.00 0.00 44.19 3.34
3092 3448 5.916969 ACGAAAGTCATTCTTCAACGAATC 58.083 37.500 0.00 0.00 44.19 2.52
3093 3449 5.696724 ACGAAAGTCATTCTTCAACGAATCT 59.303 36.000 0.00 0.00 44.19 2.40
3094 3450 6.202954 ACGAAAGTCATTCTTCAACGAATCTT 59.797 34.615 0.00 0.00 44.19 2.40
3095 3451 7.072030 CGAAAGTCATTCTTCAACGAATCTTT 58.928 34.615 0.00 0.00 33.63 2.52
3096 3452 7.587757 CGAAAGTCATTCTTCAACGAATCTTTT 59.412 33.333 0.00 0.00 32.32 2.27
3097 3453 9.237846 GAAAGTCATTCTTCAACGAATCTTTTT 57.762 29.630 0.00 0.00 32.32 1.94
3198 3554 9.733556 AAAAATTATATATAGGATGCGGTGACA 57.266 29.630 0.00 0.00 0.00 3.58
3199 3555 8.718102 AAATTATATATAGGATGCGGTGACAC 57.282 34.615 0.00 0.00 0.00 3.67
3200 3556 4.737855 ATATATAGGATGCGGTGACACC 57.262 45.455 15.13 15.13 34.05 4.16
3201 3557 1.045407 TATAGGATGCGGTGACACCC 58.955 55.000 19.11 11.99 33.75 4.61
3202 3558 0.980754 ATAGGATGCGGTGACACCCA 60.981 55.000 19.11 17.02 33.75 4.51
3203 3559 1.613317 TAGGATGCGGTGACACCCAG 61.613 60.000 19.11 7.09 33.75 4.45
3204 3560 2.662596 GATGCGGTGACACCCAGA 59.337 61.111 19.11 3.22 33.75 3.86
3205 3561 1.221840 GATGCGGTGACACCCAGAT 59.778 57.895 19.11 8.10 33.75 2.90
3206 3562 0.392998 GATGCGGTGACACCCAGATT 60.393 55.000 19.11 3.58 33.75 2.40
3207 3563 0.392998 ATGCGGTGACACCCAGATTC 60.393 55.000 19.11 2.44 33.75 2.52
3208 3564 1.296715 GCGGTGACACCCAGATTCT 59.703 57.895 19.11 0.00 33.75 2.40
3209 3565 0.741221 GCGGTGACACCCAGATTCTC 60.741 60.000 19.11 0.00 33.75 2.87
3210 3566 0.108138 CGGTGACACCCAGATTCTCC 60.108 60.000 19.11 0.00 33.75 3.71
3211 3567 1.280457 GGTGACACCCAGATTCTCCT 58.720 55.000 14.16 0.00 30.04 3.69
3212 3568 1.630878 GGTGACACCCAGATTCTCCTT 59.369 52.381 14.16 0.00 30.04 3.36
3213 3569 2.355209 GGTGACACCCAGATTCTCCTTC 60.355 54.545 14.16 0.00 30.04 3.46
3214 3570 1.550524 TGACACCCAGATTCTCCTTCG 59.449 52.381 0.00 0.00 0.00 3.79
3215 3571 1.550976 GACACCCAGATTCTCCTTCGT 59.449 52.381 0.00 0.00 0.00 3.85
3216 3572 2.758979 GACACCCAGATTCTCCTTCGTA 59.241 50.000 0.00 0.00 0.00 3.43
3217 3573 3.375699 ACACCCAGATTCTCCTTCGTAT 58.624 45.455 0.00 0.00 0.00 3.06
3218 3574 3.775316 ACACCCAGATTCTCCTTCGTATT 59.225 43.478 0.00 0.00 0.00 1.89
3219 3575 4.225267 ACACCCAGATTCTCCTTCGTATTT 59.775 41.667 0.00 0.00 0.00 1.40
3220 3576 5.186198 CACCCAGATTCTCCTTCGTATTTT 58.814 41.667 0.00 0.00 0.00 1.82
3221 3577 5.294552 CACCCAGATTCTCCTTCGTATTTTC 59.705 44.000 0.00 0.00 0.00 2.29
3222 3578 4.508124 CCCAGATTCTCCTTCGTATTTTCG 59.492 45.833 0.00 0.00 0.00 3.46
3223 3579 4.025647 CCAGATTCTCCTTCGTATTTTCGC 60.026 45.833 0.00 0.00 0.00 4.70
3224 3580 4.566759 CAGATTCTCCTTCGTATTTTCGCA 59.433 41.667 0.00 0.00 0.00 5.10
3225 3581 4.567159 AGATTCTCCTTCGTATTTTCGCAC 59.433 41.667 0.00 0.00 0.00 5.34
3226 3582 2.613691 TCTCCTTCGTATTTTCGCACC 58.386 47.619 0.00 0.00 0.00 5.01
3227 3583 2.028839 TCTCCTTCGTATTTTCGCACCA 60.029 45.455 0.00 0.00 0.00 4.17
3228 3584 2.343101 TCCTTCGTATTTTCGCACCAG 58.657 47.619 0.00 0.00 0.00 4.00
3229 3585 1.396996 CCTTCGTATTTTCGCACCAGG 59.603 52.381 0.00 0.00 0.00 4.45
3230 3586 0.800012 TTCGTATTTTCGCACCAGGC 59.200 50.000 0.00 0.00 39.90 4.85
3231 3587 0.320858 TCGTATTTTCGCACCAGGCA 60.321 50.000 0.00 0.00 45.17 4.75
3232 3588 0.179200 CGTATTTTCGCACCAGGCAC 60.179 55.000 0.00 0.00 45.17 5.01
3233 3589 0.170339 GTATTTTCGCACCAGGCACC 59.830 55.000 0.00 0.00 45.17 5.01
3234 3590 0.963355 TATTTTCGCACCAGGCACCC 60.963 55.000 0.00 0.00 45.17 4.61
3244 3600 1.522355 CAGGCACCCGCTCTGTATG 60.522 63.158 0.00 0.00 38.60 2.39
3261 3617 2.124403 GGAGCCACTGCATCAGGG 60.124 66.667 0.00 0.00 41.13 4.45
3300 3656 4.712425 CAGCAAGCAAGCCCGCAC 62.712 66.667 6.15 0.00 34.23 5.34
3302 3658 4.283403 GCAAGCAAGCCCGCACAA 62.283 61.111 0.00 0.00 0.00 3.33
3303 3659 2.652530 CAAGCAAGCCCGCACAAT 59.347 55.556 0.00 0.00 0.00 2.71
3304 3660 1.882311 CAAGCAAGCCCGCACAATA 59.118 52.632 0.00 0.00 0.00 1.90
3305 3661 0.456653 CAAGCAAGCCCGCACAATAC 60.457 55.000 0.00 0.00 0.00 1.89
3306 3662 1.922135 AAGCAAGCCCGCACAATACG 61.922 55.000 0.00 0.00 0.00 3.06
3307 3663 2.100216 CAAGCCCGCACAATACGC 59.900 61.111 0.00 0.00 0.00 4.42
3362 3720 0.527817 CGCGGTGGGATTCTACACTC 60.528 60.000 0.00 4.54 37.72 3.51
3367 3725 3.218974 GGGATTCTACACTCCCGGA 57.781 57.895 0.73 0.00 41.74 5.14
3380 3738 2.224670 ACTCCCGGACAAATTGCAAGTA 60.225 45.455 0.73 0.00 0.00 2.24
3381 3739 2.156098 TCCCGGACAAATTGCAAGTAC 58.844 47.619 0.73 0.00 0.00 2.73
3382 3740 2.159382 CCCGGACAAATTGCAAGTACT 58.841 47.619 0.73 0.00 0.00 2.73
3388 3746 3.746940 ACAAATTGCAAGTACTACCGGT 58.253 40.909 13.98 13.98 0.00 5.28
3390 3748 4.933400 ACAAATTGCAAGTACTACCGGTAG 59.067 41.667 34.98 34.98 39.04 3.18
3398 3756 1.980951 TACTACCGGTAGCGTGCGTG 61.981 60.000 36.20 15.58 36.66 5.34
3415 3773 1.810151 CGTGATCACCGTGGGAATTTT 59.190 47.619 20.03 0.00 0.00 1.82
3426 3784 4.432712 CGTGGGAATTTTGAAATCCATCC 58.567 43.478 0.53 0.50 28.73 3.51
3427 3785 4.081752 CGTGGGAATTTTGAAATCCATCCA 60.082 41.667 0.53 0.00 28.73 3.41
3428 3786 5.178061 GTGGGAATTTTGAAATCCATCCAC 58.822 41.667 0.53 0.00 32.48 4.02
3436 3794 2.572333 AAATCCATCCACCCTGCCCG 62.572 60.000 0.00 0.00 0.00 6.13
3453 3811 1.600636 CGCCAAAGAGCAGGGTGAA 60.601 57.895 0.00 0.00 34.10 3.18
3454 3812 1.856265 CGCCAAAGAGCAGGGTGAAC 61.856 60.000 0.00 0.00 34.10 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.819632 CACCAATGGGCTACTCGGC 60.820 63.158 3.55 0.00 37.90 5.54
21 22 1.086696 CAACACCAATGGGCTACTCG 58.913 55.000 3.55 0.00 37.90 4.18
24 25 4.535526 AAAATCAACACCAATGGGCTAC 57.464 40.909 3.55 0.00 37.90 3.58
138 139 4.348863 ACAGCACTTCATCTCAGACTTT 57.651 40.909 0.00 0.00 0.00 2.66
172 173 1.238439 CCCGTGTTGAAACTGATGCT 58.762 50.000 0.00 0.00 0.00 3.79
173 174 0.387239 GCCCGTGTTGAAACTGATGC 60.387 55.000 0.00 0.00 0.00 3.91
174 175 0.240945 GGCCCGTGTTGAAACTGATG 59.759 55.000 0.00 0.00 0.00 3.07
175 176 0.893727 GGGCCCGTGTTGAAACTGAT 60.894 55.000 5.69 0.00 0.00 2.90
176 177 1.527380 GGGCCCGTGTTGAAACTGA 60.527 57.895 5.69 0.00 0.00 3.41
177 178 1.106944 AAGGGCCCGTGTTGAAACTG 61.107 55.000 18.44 0.00 0.00 3.16
178 179 1.106944 CAAGGGCCCGTGTTGAAACT 61.107 55.000 27.89 0.00 0.00 2.66
179 180 1.362355 CAAGGGCCCGTGTTGAAAC 59.638 57.895 27.89 0.00 0.00 2.78
180 181 0.684805 AACAAGGGCCCGTGTTGAAA 60.685 50.000 43.26 0.00 44.39 2.69
181 182 1.076632 AACAAGGGCCCGTGTTGAA 60.077 52.632 43.26 0.00 44.39 2.69
182 183 2.598467 AACAAGGGCCCGTGTTGA 59.402 55.556 43.26 0.00 44.39 3.18
187 188 2.406002 CTGGTACAACAAGGGCCCGT 62.406 60.000 18.44 11.44 38.70 5.28
191 192 0.811281 GATGCTGGTACAACAAGGGC 59.189 55.000 0.00 0.00 38.20 5.19
244 245 9.856162 ACACCCCTATATTTAATTACAACGATT 57.144 29.630 0.00 0.00 0.00 3.34
263 264 7.093245 ACACAAAAGTGTAAAATAAACACCCCT 60.093 33.333 0.00 0.00 46.77 4.79
525 526 1.870167 GCTAAGCAGCCGGTGAGATAC 60.870 57.143 1.90 0.00 42.37 2.24
552 553 4.309099 GCTCATCATTTTGTTTCCAGCAA 58.691 39.130 0.00 0.00 0.00 3.91
553 554 3.306225 GGCTCATCATTTTGTTTCCAGCA 60.306 43.478 0.00 0.00 0.00 4.41
556 557 3.153130 TCGGCTCATCATTTTGTTTCCA 58.847 40.909 0.00 0.00 0.00 3.53
567 568 1.893062 CACAGGTCTCGGCTCATCA 59.107 57.895 0.00 0.00 0.00 3.07
574 575 0.109086 CACTAGTGCACAGGTCTCGG 60.109 60.000 21.04 1.65 0.00 4.63
601 602 8.063200 TCCATCCGTTCCATAATATAGTAGTG 57.937 38.462 0.00 0.00 0.00 2.74
602 603 7.894364 ACTCCATCCGTTCCATAATATAGTAGT 59.106 37.037 0.00 0.00 0.00 2.73
603 604 8.294954 ACTCCATCCGTTCCATAATATAGTAG 57.705 38.462 0.00 0.00 0.00 2.57
606 607 9.137459 AGATACTCCATCCGTTCCATAATATAG 57.863 37.037 0.00 0.00 33.75 1.31
616 617 4.561105 GGATGAAGATACTCCATCCGTTC 58.439 47.826 1.63 0.00 44.51 3.95
625 626 8.347004 TGACTATCTGATGGATGAAGATACTC 57.653 38.462 8.09 0.00 35.98 2.59
629 630 7.039152 ACGATTGACTATCTGATGGATGAAGAT 60.039 37.037 8.09 0.00 35.98 2.40
631 632 6.453943 ACGATTGACTATCTGATGGATGAAG 58.546 40.000 8.09 0.00 35.98 3.02
633 634 6.040842 TGAACGATTGACTATCTGATGGATGA 59.959 38.462 8.09 0.00 35.98 2.92
634 635 6.218746 TGAACGATTGACTATCTGATGGATG 58.781 40.000 8.09 0.00 35.98 3.51
635 636 6.410942 TGAACGATTGACTATCTGATGGAT 57.589 37.500 8.09 0.00 38.38 3.41
637 638 5.107182 GCATGAACGATTGACTATCTGATGG 60.107 44.000 0.00 0.00 0.00 3.51
638 639 5.464389 TGCATGAACGATTGACTATCTGATG 59.536 40.000 0.00 0.00 0.00 3.07
640 641 5.009854 TGCATGAACGATTGACTATCTGA 57.990 39.130 0.00 0.00 0.00 3.27
641 642 5.388164 CGATGCATGAACGATTGACTATCTG 60.388 44.000 2.46 0.00 0.00 2.90
643 644 4.445718 ACGATGCATGAACGATTGACTATC 59.554 41.667 2.46 0.00 0.00 2.08
644 645 4.209911 CACGATGCATGAACGATTGACTAT 59.790 41.667 2.46 0.00 0.00 2.12
645 646 3.551485 CACGATGCATGAACGATTGACTA 59.449 43.478 2.46 0.00 0.00 2.59
646 647 2.349580 CACGATGCATGAACGATTGACT 59.650 45.455 2.46 0.00 0.00 3.41
648 649 1.062440 GCACGATGCATGAACGATTGA 59.938 47.619 2.46 0.00 44.26 2.57
661 662 3.576356 GACCCGCCATGCACGATG 61.576 66.667 7.82 2.17 0.00 3.84
668 669 3.814268 CAAAGCCGACCCGCCATG 61.814 66.667 0.00 0.00 0.00 3.66
669 670 3.561120 TTCAAAGCCGACCCGCCAT 62.561 57.895 0.00 0.00 0.00 4.40
670 671 4.257654 TTCAAAGCCGACCCGCCA 62.258 61.111 0.00 0.00 0.00 5.69
671 672 3.431725 CTTCAAAGCCGACCCGCC 61.432 66.667 0.00 0.00 0.00 6.13
672 673 4.103103 GCTTCAAAGCCGACCCGC 62.103 66.667 3.27 0.00 46.20 6.13
681 682 4.932200 AGATACTCCGAAACTGCTTCAAAG 59.068 41.667 0.00 0.00 33.17 2.77
682 683 4.894784 AGATACTCCGAAACTGCTTCAAA 58.105 39.130 0.00 0.00 33.17 2.69
683 684 4.537135 AGATACTCCGAAACTGCTTCAA 57.463 40.909 0.00 0.00 33.17 2.69
684 685 4.537135 AAGATACTCCGAAACTGCTTCA 57.463 40.909 0.00 0.00 33.17 3.02
685 686 4.436183 GCAAAGATACTCCGAAACTGCTTC 60.436 45.833 0.00 0.00 0.00 3.86
686 687 3.437049 GCAAAGATACTCCGAAACTGCTT 59.563 43.478 0.00 0.00 0.00 3.91
687 688 3.003480 GCAAAGATACTCCGAAACTGCT 58.997 45.455 0.00 0.00 0.00 4.24
688 689 2.096013 GGCAAAGATACTCCGAAACTGC 59.904 50.000 0.00 0.00 0.00 4.40
689 690 2.348666 CGGCAAAGATACTCCGAAACTG 59.651 50.000 0.00 0.00 44.23 3.16
690 691 2.028385 ACGGCAAAGATACTCCGAAACT 60.028 45.455 6.52 0.00 44.23 2.66
691 692 2.093783 CACGGCAAAGATACTCCGAAAC 59.906 50.000 6.52 0.00 44.23 2.78
692 693 2.028839 TCACGGCAAAGATACTCCGAAA 60.029 45.455 6.52 0.00 44.23 3.46
693 694 1.546923 TCACGGCAAAGATACTCCGAA 59.453 47.619 6.52 0.00 44.23 4.30
694 695 1.179152 TCACGGCAAAGATACTCCGA 58.821 50.000 6.52 0.00 44.23 4.55
695 696 2.225068 ATCACGGCAAAGATACTCCG 57.775 50.000 0.00 0.00 46.61 4.63
724 725 4.394300 AGCTTCATGATGTTTGTCTAGTGC 59.606 41.667 10.05 0.00 0.00 4.40
732 733 6.541278 TGGATCTCTAAGCTTCATGATGTTTG 59.459 38.462 17.41 9.70 0.00 2.93
742 743 2.224257 CCCTGCTGGATCTCTAAGCTTC 60.224 54.545 11.88 0.00 37.82 3.86
805 1089 2.671682 GGGAGTCCAACTCAGGCC 59.328 66.667 12.30 0.00 46.79 5.19
819 1103 4.980805 GACAAGTGTGGCGCGGGA 62.981 66.667 8.83 0.00 0.00 5.14
840 1124 0.240411 GCAGCTGCTTGGTCTGAAAG 59.760 55.000 31.33 0.00 38.21 2.62
873 1157 3.777925 CGGCGACCGCTGTTTCTG 61.778 66.667 14.45 0.00 41.17 3.02
911 1195 3.359816 CGCGTATCGATCTATAAATGCGC 60.360 47.826 14.96 0.00 45.60 6.09
970 1254 1.546476 TCCTTTTCTCCTCGTGCTCTC 59.454 52.381 0.00 0.00 0.00 3.20
974 1258 1.807142 CCTTTCCTTTTCTCCTCGTGC 59.193 52.381 0.00 0.00 0.00 5.34
978 1262 3.181433 TGGGTTCCTTTCCTTTTCTCCTC 60.181 47.826 0.00 0.00 0.00 3.71
1019 1303 2.050351 CGCACACCGTCTTCGTCT 60.050 61.111 0.00 0.00 35.01 4.18
1140 1425 0.942252 AAAGAAAAGGTGGCGTCGAC 59.058 50.000 5.18 5.18 0.00 4.20
1155 1440 1.305201 GCACGGGACAACTCAAAAGA 58.695 50.000 0.00 0.00 0.00 2.52
1156 1441 1.021202 TGCACGGGACAACTCAAAAG 58.979 50.000 0.00 0.00 0.00 2.27
1157 1442 1.464734 TTGCACGGGACAACTCAAAA 58.535 45.000 0.00 0.00 0.00 2.44
1205 1491 3.490759 CGATCACCTGCGTGCACC 61.491 66.667 12.15 4.74 40.04 5.01
1225 1511 4.410400 CCTTCAGGTGGCCGGTCC 62.410 72.222 2.12 5.67 0.00 4.46
1382 1668 1.739466 TGGTACTGCTACGTTACCTCG 59.261 52.381 13.17 0.00 0.00 4.63
1389 1675 5.242434 TGATGAAAAATGGTACTGCTACGT 58.758 37.500 0.00 0.00 0.00 3.57
1390 1676 5.220662 CCTGATGAAAAATGGTACTGCTACG 60.221 44.000 0.00 0.00 0.00 3.51
1391 1677 5.880332 TCCTGATGAAAAATGGTACTGCTAC 59.120 40.000 0.00 0.00 0.00 3.58
1392 1678 6.061022 TCCTGATGAAAAATGGTACTGCTA 57.939 37.500 0.00 0.00 0.00 3.49
1393 1679 4.922206 TCCTGATGAAAAATGGTACTGCT 58.078 39.130 0.00 0.00 0.00 4.24
1394 1680 5.402398 GTTCCTGATGAAAAATGGTACTGC 58.598 41.667 0.00 0.00 33.94 4.40
1395 1681 5.711976 AGGTTCCTGATGAAAAATGGTACTG 59.288 40.000 0.00 0.00 33.94 2.74
1417 1703 5.500645 TGATACGTAGATCAACACTCAGG 57.499 43.478 0.08 0.00 32.84 3.86
1424 1710 8.062231 ACAAATTCGATGATACGTAGATCAAC 57.938 34.615 14.52 7.91 39.25 3.18
1459 1751 0.322975 AGCACATGAGAGGTCACCAC 59.677 55.000 0.00 0.00 34.75 4.16
1472 1764 1.557269 GGACCTCCACCTGAGCACAT 61.557 60.000 0.00 0.00 39.98 3.21
1664 1956 1.152673 GAGAATGGATGCCACCCCC 60.153 63.158 0.00 0.00 35.80 5.40
1674 1966 6.458232 TTTGAAAACGGAAAAGAGAATGGA 57.542 33.333 0.00 0.00 0.00 3.41
1675 1967 7.437862 TGATTTTGAAAACGGAAAAGAGAATGG 59.562 33.333 0.00 0.00 0.00 3.16
1676 1968 8.351495 TGATTTTGAAAACGGAAAAGAGAATG 57.649 30.769 0.00 0.00 0.00 2.67
1677 1969 8.940768 TTGATTTTGAAAACGGAAAAGAGAAT 57.059 26.923 0.00 0.00 0.00 2.40
1706 1998 9.545105 CCTACTACATAGGTCGATAACTATAGG 57.455 40.741 4.43 6.55 45.15 2.57
1720 2012 8.711721 AGTGACAACTGACACCTACTACATAGG 61.712 44.444 8.38 0.00 45.17 2.57
1721 2013 6.151312 AGTGACAACTGACACCTACTACATAG 59.849 42.308 8.38 0.00 40.61 2.23
1722 2014 6.008331 AGTGACAACTGACACCTACTACATA 58.992 40.000 8.38 0.00 40.61 2.29
1723 2015 4.833380 AGTGACAACTGACACCTACTACAT 59.167 41.667 8.38 0.00 40.61 2.29
1724 2016 4.212716 AGTGACAACTGACACCTACTACA 58.787 43.478 8.38 0.00 40.61 2.74
1725 2017 4.277672 TGAGTGACAACTGACACCTACTAC 59.722 45.833 8.38 0.00 40.61 2.73
1726 2018 4.277672 GTGAGTGACAACTGACACCTACTA 59.722 45.833 8.38 0.00 40.00 1.82
1727 2019 3.068307 GTGAGTGACAACTGACACCTACT 59.932 47.826 8.38 0.00 40.00 2.57
1728 2020 3.381949 GTGAGTGACAACTGACACCTAC 58.618 50.000 8.38 5.19 40.00 3.18
1729 2021 2.364324 GGTGAGTGACAACTGACACCTA 59.636 50.000 0.00 0.00 43.34 3.08
1730 2022 1.139058 GGTGAGTGACAACTGACACCT 59.861 52.381 0.00 0.00 43.34 4.00
1731 2023 1.139058 AGGTGAGTGACAACTGACACC 59.861 52.381 0.00 0.00 45.73 4.16
1732 2024 2.604046 AGGTGAGTGACAACTGACAC 57.396 50.000 4.44 4.44 45.73 3.67
1733 2025 2.236146 ACAAGGTGAGTGACAACTGACA 59.764 45.455 0.00 0.00 46.91 3.58
1734 2026 2.609459 CACAAGGTGAGTGACAACTGAC 59.391 50.000 0.00 0.00 46.91 3.51
1735 2027 2.236146 ACACAAGGTGAGTGACAACTGA 59.764 45.455 2.98 0.00 46.91 3.41
1736 2028 2.609459 GACACAAGGTGAGTGACAACTG 59.391 50.000 2.98 0.00 46.91 3.16
1738 2030 1.593006 CGACACAAGGTGAGTGACAAC 59.407 52.381 2.98 0.00 40.16 3.32
1739 2031 1.478916 TCGACACAAGGTGAGTGACAA 59.521 47.619 2.98 0.00 40.16 3.18
1742 2034 3.390135 GAAATCGACACAAGGTGAGTGA 58.610 45.455 2.98 0.00 40.16 3.41
1749 2041 3.127548 CCAAGATGGAAATCGACACAAGG 59.872 47.826 0.00 0.00 40.96 3.61
1753 2045 2.083774 TGCCAAGATGGAAATCGACAC 58.916 47.619 0.00 0.00 40.96 3.67
1822 2115 2.408022 CCGGTCTTCTCGGCGTAG 59.592 66.667 6.85 3.20 41.07 3.51
1823 2116 3.136123 CCCGGTCTTCTCGGCGTA 61.136 66.667 6.85 0.00 45.60 4.42
1828 2121 3.068691 TCCAGCCCGGTCTTCTCG 61.069 66.667 0.00 0.00 35.57 4.04
1840 2133 4.295119 ACGGTGACCACGTCCAGC 62.295 66.667 1.11 0.00 41.25 4.85
1913 2206 1.374758 GCAGGTTGACGAGGACCAG 60.375 63.158 0.00 0.00 38.42 4.00
1922 2215 1.000938 CTTGCCTTTGAGCAGGTTGAC 60.001 52.381 0.00 0.00 45.13 3.18
1943 2236 0.472471 AAGGCACACCGGAAGAAAGA 59.528 50.000 9.46 0.00 42.76 2.52
1971 2264 1.736126 TGCTCGTTGTCTAGTACGGAG 59.264 52.381 12.38 10.12 38.26 4.63
1972 2265 1.812235 TGCTCGTTGTCTAGTACGGA 58.188 50.000 12.38 0.00 38.26 4.69
1973 2266 2.624316 TTGCTCGTTGTCTAGTACGG 57.376 50.000 12.38 6.82 38.26 4.02
1974 2267 3.918591 ACAATTGCTCGTTGTCTAGTACG 59.081 43.478 5.05 7.98 34.93 3.67
2044 2342 3.986006 GTCCTCCACGGTGTCGCA 61.986 66.667 7.45 0.00 40.63 5.10
2157 2455 3.299340 TCAGACAGCTTCTTTCGGTAC 57.701 47.619 0.00 0.00 28.96 3.34
2160 2458 3.120060 CCATTTCAGACAGCTTCTTTCGG 60.120 47.826 0.00 0.00 28.96 4.30
2183 2481 1.813178 AGAAGCTCTTGACGATGTCGA 59.187 47.619 9.67 0.00 43.02 4.20
2186 2484 3.701542 TGGATAGAAGCTCTTGACGATGT 59.298 43.478 0.00 0.00 0.00 3.06
2220 2518 3.621715 GCGTTCTTACTTACTTCATGGGG 59.378 47.826 0.00 0.00 0.00 4.96
2234 2532 5.647589 CAGTTATGTACTCCTGCGTTCTTA 58.352 41.667 0.00 0.00 33.85 2.10
2236 2534 3.676324 GCAGTTATGTACTCCTGCGTTCT 60.676 47.826 9.64 0.00 40.67 3.01
2238 2536 2.618053 GCAGTTATGTACTCCTGCGTT 58.382 47.619 9.64 0.00 40.67 4.84
2245 2543 5.863935 TGATCGCATATGCAGTTATGTACTC 59.136 40.000 26.52 8.26 42.21 2.59
2258 2556 1.871676 ACTGCAAGCTGATCGCATATG 59.128 47.619 11.20 0.00 42.61 1.78
2289 2598 1.348064 CCTCCTGGTTAGTGGTCACA 58.652 55.000 3.82 0.00 0.00 3.58
2291 2600 3.884467 ACCTCCTGGTTAGTGGTCA 57.116 52.632 0.00 0.00 46.05 4.02
2313 2623 0.389025 CCCCTTCAACAAACCTGCAC 59.611 55.000 0.00 0.00 0.00 4.57
2322 2632 2.108250 CCTTTCCTCTTCCCCTTCAACA 59.892 50.000 0.00 0.00 0.00 3.33
2337 2647 3.118112 TCTTGGAGCTCATCATCCTTTCC 60.118 47.826 17.19 0.00 36.50 3.13
2340 2650 2.438763 CCTCTTGGAGCTCATCATCCTT 59.561 50.000 17.19 0.00 36.50 3.36
2385 2698 3.775654 CACTCCTCCACCGCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
2447 2760 3.443925 TCTCAGCCGCTCACTCCG 61.444 66.667 0.00 0.00 0.00 4.63
2448 2761 2.183046 GTCTCAGCCGCTCACTCC 59.817 66.667 0.00 0.00 0.00 3.85
2473 2786 1.462670 CTGCCACGCTTCTTTCTTCTC 59.537 52.381 0.00 0.00 0.00 2.87
2477 2790 0.886490 CCACTGCCACGCTTCTTTCT 60.886 55.000 0.00 0.00 0.00 2.52
2478 2791 1.166531 ACCACTGCCACGCTTCTTTC 61.167 55.000 0.00 0.00 0.00 2.62
2479 2792 1.152963 ACCACTGCCACGCTTCTTT 60.153 52.632 0.00 0.00 0.00 2.52
2524 2842 4.633126 ACATTCGATTCCACAGACAGAATG 59.367 41.667 12.05 12.05 45.04 2.67
2585 2939 4.428615 TTAATTTGCTACGTTGCCTTCC 57.571 40.909 19.09 0.00 0.00 3.46
2631 2985 2.839486 TCCCACTCTTGACACACATC 57.161 50.000 0.00 0.00 0.00 3.06
2719 3075 0.040067 GGCAAAGAGGTTCAACGCAG 60.040 55.000 0.00 0.00 0.00 5.18
2726 3082 2.861147 AGGTACTGGCAAAGAGGTTC 57.139 50.000 0.00 0.00 37.18 3.62
2728 3084 3.595190 AAAAGGTACTGGCAAAGAGGT 57.405 42.857 0.00 0.00 40.86 3.85
2730 3086 6.438763 CAGTTAAAAAGGTACTGGCAAAGAG 58.561 40.000 0.00 0.00 40.86 2.85
2745 3101 5.667466 ACGAGAAGAGACACCAGTTAAAAA 58.333 37.500 0.00 0.00 0.00 1.94
2754 3110 1.085091 TAGCGACGAGAAGAGACACC 58.915 55.000 0.00 0.00 0.00 4.16
2756 3112 1.085091 GGTAGCGACGAGAAGAGACA 58.915 55.000 0.00 0.00 0.00 3.41
2757 3113 1.328374 GAGGTAGCGACGAGAAGAGAC 59.672 57.143 0.00 0.00 0.00 3.36
2791 3147 3.760684 GTCCCAATTCTCTTTGCAGATGT 59.239 43.478 0.00 0.00 0.00 3.06
2792 3148 3.760151 TGTCCCAATTCTCTTTGCAGATG 59.240 43.478 0.00 0.00 0.00 2.90
2793 3149 3.760684 GTGTCCCAATTCTCTTTGCAGAT 59.239 43.478 0.00 0.00 0.00 2.90
2794 3150 3.149196 GTGTCCCAATTCTCTTTGCAGA 58.851 45.455 0.00 0.00 0.00 4.26
2795 3151 2.229784 GGTGTCCCAATTCTCTTTGCAG 59.770 50.000 0.00 0.00 0.00 4.41
2796 3152 2.238521 GGTGTCCCAATTCTCTTTGCA 58.761 47.619 0.00 0.00 0.00 4.08
2797 3153 2.229784 CTGGTGTCCCAATTCTCTTTGC 59.770 50.000 0.00 0.00 41.27 3.68
2798 3154 2.821969 CCTGGTGTCCCAATTCTCTTTG 59.178 50.000 0.00 0.00 41.27 2.77
2799 3155 2.819348 GCCTGGTGTCCCAATTCTCTTT 60.819 50.000 0.00 0.00 41.27 2.52
2800 3156 1.272147 GCCTGGTGTCCCAATTCTCTT 60.272 52.381 0.00 0.00 41.27 2.85
2809 3165 4.699522 GTCCGTGCCTGGTGTCCC 62.700 72.222 0.00 0.00 0.00 4.46
2819 3175 4.477975 CGAGAGTCCCGTCCGTGC 62.478 72.222 0.00 0.00 0.00 5.34
2820 3176 3.812019 CCGAGAGTCCCGTCCGTG 61.812 72.222 0.00 0.00 0.00 4.94
2824 3180 2.708865 GGAACCCGAGAGTCCCGTC 61.709 68.421 0.00 0.00 0.00 4.79
2825 3181 2.679287 GGAACCCGAGAGTCCCGT 60.679 66.667 0.00 0.00 0.00 5.28
2836 3192 1.823169 TATAGGATGCGCCGGAACCC 61.823 60.000 5.05 0.00 43.43 4.11
2837 3193 0.249398 ATATAGGATGCGCCGGAACC 59.751 55.000 5.05 0.00 43.43 3.62
2838 3194 1.359848 CATATAGGATGCGCCGGAAC 58.640 55.000 5.05 0.00 43.43 3.62
2839 3195 0.391130 GCATATAGGATGCGCCGGAA 60.391 55.000 5.05 0.00 43.43 4.30
2840 3196 1.218047 GCATATAGGATGCGCCGGA 59.782 57.895 5.05 0.00 43.43 5.14
2841 3197 3.799753 GCATATAGGATGCGCCGG 58.200 61.111 4.18 0.00 43.43 6.13
2846 3202 3.641437 TTTTTGGCGCATATAGGATGC 57.359 42.857 10.83 0.00 41.35 3.91
2956 3312 9.056005 CCCGAAGTCAATATGAATCATTTCTTA 57.944 33.333 0.00 0.00 32.78 2.10
2957 3313 7.013655 CCCCGAAGTCAATATGAATCATTTCTT 59.986 37.037 0.00 0.18 32.78 2.52
2958 3314 6.488006 CCCCGAAGTCAATATGAATCATTTCT 59.512 38.462 0.00 0.00 32.78 2.52
2959 3315 6.672147 CCCCGAAGTCAATATGAATCATTTC 58.328 40.000 0.00 0.00 0.00 2.17
2960 3316 5.010012 GCCCCGAAGTCAATATGAATCATTT 59.990 40.000 0.00 0.00 0.00 2.32
2961 3317 4.520492 GCCCCGAAGTCAATATGAATCATT 59.480 41.667 0.00 0.00 0.00 2.57
2962 3318 4.074970 GCCCCGAAGTCAATATGAATCAT 58.925 43.478 0.00 0.00 0.00 2.45
2963 3319 3.118075 TGCCCCGAAGTCAATATGAATCA 60.118 43.478 0.00 0.00 0.00 2.57
2964 3320 3.476552 TGCCCCGAAGTCAATATGAATC 58.523 45.455 0.00 0.00 0.00 2.52
2965 3321 3.576078 TGCCCCGAAGTCAATATGAAT 57.424 42.857 0.00 0.00 0.00 2.57
2966 3322 3.358111 TTGCCCCGAAGTCAATATGAA 57.642 42.857 0.00 0.00 0.00 2.57
2967 3323 3.358111 TTTGCCCCGAAGTCAATATGA 57.642 42.857 0.00 0.00 0.00 2.15
2968 3324 4.448537 TTTTTGCCCCGAAGTCAATATG 57.551 40.909 0.00 0.00 0.00 1.78
2989 3345 8.936864 GCTATACTGTTGTCATAAACTTGTCTT 58.063 33.333 0.00 0.00 0.00 3.01
2990 3346 7.275779 CGCTATACTGTTGTCATAAACTTGTCT 59.724 37.037 0.00 0.00 0.00 3.41
2991 3347 7.391786 CGCTATACTGTTGTCATAAACTTGTC 58.608 38.462 0.00 0.00 0.00 3.18
2992 3348 6.312918 CCGCTATACTGTTGTCATAAACTTGT 59.687 38.462 0.00 0.00 0.00 3.16
2993 3349 6.238103 CCCGCTATACTGTTGTCATAAACTTG 60.238 42.308 0.00 0.00 0.00 3.16
2994 3350 5.815740 CCCGCTATACTGTTGTCATAAACTT 59.184 40.000 0.00 0.00 0.00 2.66
2995 3351 5.105064 ACCCGCTATACTGTTGTCATAAACT 60.105 40.000 0.00 0.00 0.00 2.66
2996 3352 5.114081 ACCCGCTATACTGTTGTCATAAAC 58.886 41.667 0.00 0.00 0.00 2.01
2997 3353 5.347620 ACCCGCTATACTGTTGTCATAAA 57.652 39.130 0.00 0.00 0.00 1.40
2998 3354 6.659745 ATACCCGCTATACTGTTGTCATAA 57.340 37.500 0.00 0.00 0.00 1.90
2999 3355 6.944290 ACTATACCCGCTATACTGTTGTCATA 59.056 38.462 0.00 0.00 0.00 2.15
3000 3356 5.773680 ACTATACCCGCTATACTGTTGTCAT 59.226 40.000 0.00 0.00 0.00 3.06
3001 3357 5.135383 ACTATACCCGCTATACTGTTGTCA 58.865 41.667 0.00 0.00 0.00 3.58
3002 3358 5.702349 ACTATACCCGCTATACTGTTGTC 57.298 43.478 0.00 0.00 0.00 3.18
3003 3359 6.302269 AGTACTATACCCGCTATACTGTTGT 58.698 40.000 0.00 0.00 0.00 3.32
3004 3360 6.814506 AGTACTATACCCGCTATACTGTTG 57.185 41.667 0.00 0.00 0.00 3.33
3005 3361 6.774656 ACAAGTACTATACCCGCTATACTGTT 59.225 38.462 0.00 0.00 0.00 3.16
3006 3362 6.302269 ACAAGTACTATACCCGCTATACTGT 58.698 40.000 0.00 0.00 0.00 3.55
3007 3363 6.814506 ACAAGTACTATACCCGCTATACTG 57.185 41.667 0.00 0.00 0.00 2.74
3013 3369 8.547173 ACTCTATATACAAGTACTATACCCGCT 58.453 37.037 0.00 0.00 0.00 5.52
3014 3370 8.729805 ACTCTATATACAAGTACTATACCCGC 57.270 38.462 0.00 0.00 0.00 6.13
3040 3396 0.747852 GGTTGAAGGGTCGGCAAAAA 59.252 50.000 0.00 0.00 0.00 1.94
3041 3397 1.110518 GGGTTGAAGGGTCGGCAAAA 61.111 55.000 0.00 0.00 0.00 2.44
3042 3398 1.529713 GGGTTGAAGGGTCGGCAAA 60.530 57.895 0.00 0.00 0.00 3.68
3043 3399 2.114411 GGGTTGAAGGGTCGGCAA 59.886 61.111 0.00 0.00 0.00 4.52
3044 3400 3.172106 TGGGTTGAAGGGTCGGCA 61.172 61.111 0.00 0.00 0.00 5.69
3045 3401 2.359975 CTGGGTTGAAGGGTCGGC 60.360 66.667 0.00 0.00 0.00 5.54
3046 3402 1.562672 ATCCTGGGTTGAAGGGTCGG 61.563 60.000 0.00 0.00 35.35 4.79
3047 3403 0.392998 CATCCTGGGTTGAAGGGTCG 60.393 60.000 0.00 0.00 35.35 4.79
3048 3404 0.681243 GCATCCTGGGTTGAAGGGTC 60.681 60.000 0.00 0.00 35.35 4.46
3049 3405 1.384191 GCATCCTGGGTTGAAGGGT 59.616 57.895 0.00 0.00 35.35 4.34
3050 3406 0.251742 TTGCATCCTGGGTTGAAGGG 60.252 55.000 0.00 0.00 35.35 3.95
3051 3407 0.890683 GTTGCATCCTGGGTTGAAGG 59.109 55.000 0.00 0.00 36.02 3.46
3052 3408 0.523072 CGTTGCATCCTGGGTTGAAG 59.477 55.000 0.00 0.00 0.00 3.02
3053 3409 0.109532 TCGTTGCATCCTGGGTTGAA 59.890 50.000 0.00 0.00 0.00 2.69
3054 3410 0.109532 TTCGTTGCATCCTGGGTTGA 59.890 50.000 0.00 0.00 0.00 3.18
3055 3411 0.958091 TTTCGTTGCATCCTGGGTTG 59.042 50.000 0.00 0.00 0.00 3.77
3056 3412 1.247567 CTTTCGTTGCATCCTGGGTT 58.752 50.000 0.00 0.00 0.00 4.11
3057 3413 0.110486 ACTTTCGTTGCATCCTGGGT 59.890 50.000 0.00 0.00 0.00 4.51
3058 3414 0.804989 GACTTTCGTTGCATCCTGGG 59.195 55.000 0.00 0.00 0.00 4.45
3059 3415 1.522668 TGACTTTCGTTGCATCCTGG 58.477 50.000 0.00 0.00 0.00 4.45
3060 3416 3.438087 AGAATGACTTTCGTTGCATCCTG 59.562 43.478 0.00 0.00 39.46 3.86
3061 3417 3.679389 AGAATGACTTTCGTTGCATCCT 58.321 40.909 0.00 0.00 39.46 3.24
3062 3418 4.083324 TGAAGAATGACTTTCGTTGCATCC 60.083 41.667 0.00 0.00 39.13 3.51
3063 3419 5.034554 TGAAGAATGACTTTCGTTGCATC 57.965 39.130 0.00 0.00 39.13 3.91
3064 3420 5.215160 GTTGAAGAATGACTTTCGTTGCAT 58.785 37.500 0.00 0.00 39.13 3.96
3065 3421 4.597079 GTTGAAGAATGACTTTCGTTGCA 58.403 39.130 0.00 0.00 39.13 4.08
3066 3422 3.659444 CGTTGAAGAATGACTTTCGTTGC 59.341 43.478 0.00 0.00 39.13 4.17
3067 3423 5.078153 TCGTTGAAGAATGACTTTCGTTG 57.922 39.130 0.00 0.00 39.13 4.10
3068 3424 5.728351 TTCGTTGAAGAATGACTTTCGTT 57.272 34.783 0.00 0.00 39.13 3.85
3069 3425 5.696724 AGATTCGTTGAAGAATGACTTTCGT 59.303 36.000 0.00 0.00 40.58 3.85
3070 3426 6.158175 AGATTCGTTGAAGAATGACTTTCG 57.842 37.500 0.00 0.00 40.58 3.46
3071 3427 8.788409 AAAAGATTCGTTGAAGAATGACTTTC 57.212 30.769 0.00 0.00 40.58 2.62
3172 3528 9.733556 TGTCACCGCATCCTATATATAATTTTT 57.266 29.630 0.00 0.00 0.00 1.94
3173 3529 9.162764 GTGTCACCGCATCCTATATATAATTTT 57.837 33.333 0.00 0.00 0.00 1.82
3174 3530 7.769044 GGTGTCACCGCATCCTATATATAATTT 59.231 37.037 6.18 0.00 0.00 1.82
3175 3531 7.272978 GGTGTCACCGCATCCTATATATAATT 58.727 38.462 6.18 0.00 0.00 1.40
3176 3532 6.183360 GGGTGTCACCGCATCCTATATATAAT 60.183 42.308 15.93 0.00 39.83 1.28
3177 3533 5.128171 GGGTGTCACCGCATCCTATATATAA 59.872 44.000 15.93 0.00 39.83 0.98
3178 3534 4.647853 GGGTGTCACCGCATCCTATATATA 59.352 45.833 15.93 0.00 39.83 0.86
3179 3535 3.451178 GGGTGTCACCGCATCCTATATAT 59.549 47.826 15.93 0.00 39.83 0.86
3180 3536 2.829720 GGGTGTCACCGCATCCTATATA 59.170 50.000 15.93 0.00 39.83 0.86
3181 3537 1.623811 GGGTGTCACCGCATCCTATAT 59.376 52.381 15.93 0.00 39.83 0.86
3182 3538 1.045407 GGGTGTCACCGCATCCTATA 58.955 55.000 15.93 0.00 39.83 1.31
3183 3539 0.980754 TGGGTGTCACCGCATCCTAT 60.981 55.000 15.93 0.00 40.24 2.57
3184 3540 1.610967 TGGGTGTCACCGCATCCTA 60.611 57.895 15.93 0.00 40.24 2.94
3185 3541 2.927856 TGGGTGTCACCGCATCCT 60.928 61.111 15.93 0.00 40.24 3.24
3186 3542 2.257409 ATCTGGGTGTCACCGCATCC 62.257 60.000 15.93 2.16 39.83 3.51
3187 3543 0.392998 AATCTGGGTGTCACCGCATC 60.393 55.000 15.93 2.54 39.83 3.91
3188 3544 0.392998 GAATCTGGGTGTCACCGCAT 60.393 55.000 15.93 4.68 39.83 4.73
3189 3545 1.003839 GAATCTGGGTGTCACCGCA 60.004 57.895 15.93 13.29 39.83 5.69
3190 3546 0.741221 GAGAATCTGGGTGTCACCGC 60.741 60.000 15.93 9.42 39.83 5.68
3191 3547 0.108138 GGAGAATCTGGGTGTCACCG 60.108 60.000 15.93 3.24 35.14 4.94
3192 3548 1.280457 AGGAGAATCTGGGTGTCACC 58.720 55.000 14.13 14.13 33.93 4.02
3193 3549 2.675317 CGAAGGAGAATCTGGGTGTCAC 60.675 54.545 0.00 0.00 33.73 3.67
3194 3550 1.550524 CGAAGGAGAATCTGGGTGTCA 59.449 52.381 0.00 0.00 33.73 3.58
3195 3551 1.550976 ACGAAGGAGAATCTGGGTGTC 59.449 52.381 0.00 0.00 33.73 3.67
3196 3552 1.645710 ACGAAGGAGAATCTGGGTGT 58.354 50.000 0.00 0.00 33.73 4.16
3197 3553 4.408182 AATACGAAGGAGAATCTGGGTG 57.592 45.455 0.00 0.00 33.73 4.61
3198 3554 5.429130 GAAAATACGAAGGAGAATCTGGGT 58.571 41.667 0.00 0.00 33.73 4.51
3199 3555 4.508124 CGAAAATACGAAGGAGAATCTGGG 59.492 45.833 0.00 0.00 32.74 4.45
3200 3556 4.025647 GCGAAAATACGAAGGAGAATCTGG 60.026 45.833 0.00 0.00 32.74 3.86
3201 3557 4.566759 TGCGAAAATACGAAGGAGAATCTG 59.433 41.667 0.00 0.00 32.74 2.90
3202 3558 4.567159 GTGCGAAAATACGAAGGAGAATCT 59.433 41.667 0.00 0.00 32.74 2.40
3203 3559 4.260253 GGTGCGAAAATACGAAGGAGAATC 60.260 45.833 0.00 0.00 35.09 2.52
3204 3560 3.621715 GGTGCGAAAATACGAAGGAGAAT 59.378 43.478 0.00 0.00 35.09 2.40
3205 3561 2.997986 GGTGCGAAAATACGAAGGAGAA 59.002 45.455 0.00 0.00 35.09 2.87
3206 3562 2.028839 TGGTGCGAAAATACGAAGGAGA 60.029 45.455 0.00 0.00 35.09 3.71
3207 3563 2.343101 TGGTGCGAAAATACGAAGGAG 58.657 47.619 0.00 0.00 35.09 3.69
3208 3564 2.343101 CTGGTGCGAAAATACGAAGGA 58.657 47.619 0.00 0.00 35.09 3.36
3209 3565 1.396996 CCTGGTGCGAAAATACGAAGG 59.603 52.381 0.00 0.00 35.09 3.46
3210 3566 1.202031 GCCTGGTGCGAAAATACGAAG 60.202 52.381 0.00 0.00 35.09 3.79
3211 3567 0.800012 GCCTGGTGCGAAAATACGAA 59.200 50.000 0.00 0.00 35.09 3.85
3212 3568 0.320858 TGCCTGGTGCGAAAATACGA 60.321 50.000 0.00 0.00 45.60 3.43
3213 3569 0.179200 GTGCCTGGTGCGAAAATACG 60.179 55.000 0.00 0.00 45.60 3.06
3214 3570 0.170339 GGTGCCTGGTGCGAAAATAC 59.830 55.000 0.00 0.00 45.60 1.89
3215 3571 0.963355 GGGTGCCTGGTGCGAAAATA 60.963 55.000 0.00 0.00 45.60 1.40
3216 3572 2.275380 GGGTGCCTGGTGCGAAAAT 61.275 57.895 0.00 0.00 45.60 1.82
3217 3573 2.909965 GGGTGCCTGGTGCGAAAA 60.910 61.111 0.00 0.00 45.60 2.29
3225 3581 2.735772 ATACAGAGCGGGTGCCTGG 61.736 63.158 0.00 0.00 44.31 4.45
3226 3582 1.522355 CATACAGAGCGGGTGCCTG 60.522 63.158 0.00 0.00 44.31 4.85
3227 3583 2.735772 CCATACAGAGCGGGTGCCT 61.736 63.158 0.00 0.00 44.31 4.75
3228 3584 2.203070 CCATACAGAGCGGGTGCC 60.203 66.667 0.00 0.00 44.31 5.01
3229 3585 1.227380 CTCCATACAGAGCGGGTGC 60.227 63.158 0.00 0.00 43.24 5.01
3236 3592 0.538584 TGCAGTGGCTCCATACAGAG 59.461 55.000 0.00 0.00 41.91 3.35
3237 3593 1.139654 GATGCAGTGGCTCCATACAGA 59.860 52.381 0.00 0.00 41.91 3.41
3244 3600 1.626356 TACCCTGATGCAGTGGCTCC 61.626 60.000 0.00 0.00 41.91 4.70
3250 3606 1.596934 CCACGTACCCTGATGCAGT 59.403 57.895 0.00 0.00 0.00 4.40
3261 3617 0.870307 CATGAGCCTACGCCACGTAC 60.870 60.000 0.00 0.00 41.54 3.67
3277 3633 2.125673 GCTTGCTTGCTGGCCATG 60.126 61.111 5.51 1.08 0.00 3.66
3299 3655 2.125269 GCTCCCACCGCGTATTGT 60.125 61.111 4.92 0.00 0.00 2.71
3300 3656 3.261951 CGCTCCCACCGCGTATTG 61.262 66.667 4.92 0.00 45.13 1.90
3339 3697 1.758280 TGTAGAATCCCACCGCGTATT 59.242 47.619 4.92 0.00 0.00 1.89
3362 3720 2.159382 AGTACTTGCAATTTGTCCGGG 58.841 47.619 0.00 0.00 0.00 5.73
3367 3725 3.746940 ACCGGTAGTACTTGCAATTTGT 58.253 40.909 4.49 0.00 0.00 2.83
3380 3738 3.058160 ACGCACGCTACCGGTAGT 61.058 61.111 35.78 20.19 39.22 2.73
3381 3739 2.332362 ATCACGCACGCTACCGGTAG 62.332 60.000 33.18 33.18 39.22 3.18
3382 3740 2.327002 GATCACGCACGCTACCGGTA 62.327 60.000 14.95 14.95 39.22 4.02
3388 3746 2.202557 CGGTGATCACGCACGCTA 60.203 61.111 19.33 0.00 39.66 4.26
3390 3748 4.134187 CACGGTGATCACGCACGC 62.134 66.667 19.33 4.46 39.66 5.34
3398 3756 4.513198 TTTCAAAATTCCCACGGTGATC 57.487 40.909 10.28 0.00 0.00 2.92
3415 3773 0.033208 GGCAGGGTGGATGGATTTCA 60.033 55.000 0.00 0.00 0.00 2.69
3426 3784 4.659172 TCTTTGGCGGGCAGGGTG 62.659 66.667 3.91 0.00 0.00 4.61
3427 3785 4.351054 CTCTTTGGCGGGCAGGGT 62.351 66.667 3.91 0.00 0.00 4.34
3436 3794 1.959848 GTTCACCCTGCTCTTTGGC 59.040 57.895 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.