Multiple sequence alignment - TraesCS7A01G397900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G397900 chr7A 100.000 5212 0 0 1 5212 577200205 577205416 0.000000e+00 9625.0
1 TraesCS7A01G397900 chr7A 87.843 839 71 20 805 1618 135709025 135708193 0.000000e+00 955.0
2 TraesCS7A01G397900 chr7A 100.000 355 0 0 5429 5783 577205633 577205987 0.000000e+00 656.0
3 TraesCS7A01G397900 chr7A 87.500 152 17 2 3509 3658 91205355 91205204 2.140000e-39 174.0
4 TraesCS7A01G397900 chr7A 96.923 65 2 0 4051 4115 630034401 630034337 6.130000e-20 110.0
5 TraesCS7A01G397900 chr7D 93.270 3551 116 32 1 3511 507243866 507247333 0.000000e+00 5120.0
6 TraesCS7A01G397900 chr7D 86.848 844 71 23 805 1625 136248212 136247386 0.000000e+00 907.0
7 TraesCS7A01G397900 chr7D 81.181 1185 154 48 1907 3051 136246499 136245344 0.000000e+00 889.0
8 TraesCS7A01G397900 chr7D 93.097 536 14 9 4575 5102 507248271 507248791 0.000000e+00 763.0
9 TraesCS7A01G397900 chr7D 94.146 410 21 2 3650 4058 507247317 507247724 6.360000e-174 621.0
10 TraesCS7A01G397900 chr7D 90.208 480 19 12 4112 4564 507247707 507248185 8.290000e-168 601.0
11 TraesCS7A01G397900 chr7D 94.798 173 9 0 5611 5783 507302383 507302555 2.660000e-68 270.0
12 TraesCS7A01G397900 chr7D 91.176 68 5 1 4724 4791 136244078 136244012 2.220000e-14 91.6
13 TraesCS7A01G397900 chr7B 93.124 1527 60 16 641 2148 535687980 535689480 0.000000e+00 2196.0
14 TraesCS7A01G397900 chr7B 84.096 2427 207 82 777 3120 256170711 256173041 0.000000e+00 2178.0
15 TraesCS7A01G397900 chr7B 89.889 811 29 14 2133 2922 535689501 535690279 0.000000e+00 994.0
16 TraesCS7A01G397900 chr7B 86.946 835 70 26 805 1617 99106099 99105282 0.000000e+00 902.0
17 TraesCS7A01G397900 chr7B 92.587 634 23 7 4575 5200 535696116 535696733 0.000000e+00 889.0
18 TraesCS7A01G397900 chr7B 96.788 467 15 0 2961 3427 535690283 535690749 0.000000e+00 780.0
19 TraesCS7A01G397900 chr7B 94.621 409 18 3 3650 4057 535690924 535691329 1.060000e-176 630.0
20 TraesCS7A01G397900 chr7B 77.303 749 97 42 2766 3497 99103161 99102469 1.970000e-99 374.0
21 TraesCS7A01G397900 chr7B 82.500 440 55 14 2158 2580 99103917 99103483 3.290000e-97 366.0
22 TraesCS7A01G397900 chr7B 96.759 216 6 1 4112 4327 535691313 535691527 5.510000e-95 359.0
23 TraesCS7A01G397900 chr7B 94.643 224 9 3 4343 4564 535691580 535691802 1.540000e-90 344.0
24 TraesCS7A01G397900 chr7B 88.800 125 13 1 4699 4823 99101548 99101425 1.000000e-32 152.0
25 TraesCS7A01G397900 chr7B 90.435 115 9 2 5669 5783 535697238 535697350 3.610000e-32 150.0
26 TraesCS7A01G397900 chr7B 83.108 148 20 5 89 233 688738415 688738560 4.700000e-26 130.0
27 TraesCS7A01G397900 chr7B 89.773 88 1 1 3423 3510 535690860 535690939 7.930000e-19 106.0
28 TraesCS7A01G397900 chr5B 82.117 2097 215 80 1102 3120 343721167 343723181 0.000000e+00 1648.0
29 TraesCS7A01G397900 chr5B 85.197 304 32 4 805 1107 343719162 343719453 3.390000e-77 300.0
30 TraesCS7A01G397900 chr5B 92.053 151 12 0 3504 3654 436094033 436094183 4.540000e-51 213.0
31 TraesCS7A01G397900 chr5B 91.724 145 12 0 3510 3654 325062195 325062051 9.830000e-48 202.0
32 TraesCS7A01G397900 chr5B 90.541 148 9 2 3509 3656 9814991 9815133 2.130000e-44 191.0
33 TraesCS7A01G397900 chr5B 89.933 149 12 1 3509 3654 437627258 437627406 7.650000e-44 189.0
34 TraesCS7A01G397900 chr5B 90.385 52 2 3 553 603 476613672 476613623 1.350000e-06 65.8
35 TraesCS7A01G397900 chr5B 100.000 29 0 0 4625 4653 155713929 155713901 3.000000e-03 54.7
36 TraesCS7A01G397900 chr4B 95.932 295 11 1 1153 1447 603017892 603017599 1.460000e-130 477.0
37 TraesCS7A01G397900 chr4B 92.517 147 11 0 3508 3654 14393728 14393582 1.630000e-50 211.0
38 TraesCS7A01G397900 chr3B 95.932 295 11 1 1153 1447 811782541 811782834 1.460000e-130 477.0
39 TraesCS7A01G397900 chr3B 96.923 65 2 0 4051 4115 106897652 106897588 6.130000e-20 110.0
40 TraesCS7A01G397900 chr2B 92.617 149 11 0 3506 3654 87356981 87356833 1.260000e-51 215.0
41 TraesCS7A01G397900 chr2B 96.774 62 2 0 4051 4112 426325050 426325111 2.850000e-18 104.0
42 TraesCS7A01G397900 chr6B 92.517 147 11 0 3509 3655 52024741 52024595 1.630000e-50 211.0
43 TraesCS7A01G397900 chr6B 90.411 146 13 1 3509 3653 6015684 6015539 2.130000e-44 191.0
44 TraesCS7A01G397900 chr6B 93.478 46 3 0 561 606 26564568 26564523 1.040000e-07 69.4
45 TraesCS7A01G397900 chr6B 91.837 49 4 0 557 605 550587916 550587868 1.040000e-07 69.4
46 TraesCS7A01G397900 chr6B 91.837 49 4 0 557 605 550782318 550782270 1.040000e-07 69.4
47 TraesCS7A01G397900 chr4D 82.840 169 24 5 89 254 30414388 30414554 4.670000e-31 147.0
48 TraesCS7A01G397900 chr4D 91.803 61 3 1 4625 4683 403138967 403139027 3.710000e-12 84.2
49 TraesCS7A01G397900 chr4D 93.750 48 1 2 559 605 163791376 163791330 2.890000e-08 71.3
50 TraesCS7A01G397900 chr5D 96.875 64 2 0 4051 4114 533661513 533661576 2.200000e-19 108.0
51 TraesCS7A01G397900 chr5D 93.617 47 2 1 557 603 436422521 436422566 1.040000e-07 69.4
52 TraesCS7A01G397900 chr5D 100.000 29 0 0 4625 4653 138468979 138468951 3.000000e-03 54.7
53 TraesCS7A01G397900 chr5A 95.522 67 3 0 4051 4117 111575751 111575817 2.200000e-19 108.0
54 TraesCS7A01G397900 chr5A 100.000 29 0 0 4625 4653 184233240 184233268 3.000000e-03 54.7
55 TraesCS7A01G397900 chr1A 96.875 64 2 0 4051 4114 50339430 50339493 2.200000e-19 108.0
56 TraesCS7A01G397900 chr1A 94.366 71 2 1 4051 4121 406207516 406207584 2.200000e-19 108.0
57 TraesCS7A01G397900 chr1A 100.000 29 0 0 4624 4652 47582185 47582213 3.000000e-03 54.7
58 TraesCS7A01G397900 chr1B 93.056 72 5 0 4051 4122 115751594 115751523 7.930000e-19 106.0
59 TraesCS7A01G397900 chr4A 86.139 101 8 5 4013 4110 38576906 38576809 2.850000e-18 104.0
60 TraesCS7A01G397900 chr6A 93.750 48 1 2 559 605 298461174 298461220 2.890000e-08 71.3
61 TraesCS7A01G397900 chr6D 85.484 62 6 3 559 619 68652303 68652244 1.740000e-05 62.1
62 TraesCS7A01G397900 chr3A 100.000 31 0 0 4623 4653 486046435 486046465 2.250000e-04 58.4
63 TraesCS7A01G397900 chr3A 96.875 32 0 1 4623 4653 652018357 652018388 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G397900 chr7A 577200205 577205987 5782 False 5140.500000 9625 100.000000 1 5783 2 chr7A.!!$F1 5782
1 TraesCS7A01G397900 chr7A 135708193 135709025 832 True 955.000000 955 87.843000 805 1618 1 chr7A.!!$R2 813
2 TraesCS7A01G397900 chr7D 507243866 507248791 4925 False 1776.250000 5120 92.680250 1 5102 4 chr7D.!!$F2 5101
3 TraesCS7A01G397900 chr7D 136244012 136248212 4200 True 629.200000 907 86.401667 805 4791 3 chr7D.!!$R1 3986
4 TraesCS7A01G397900 chr7B 256170711 256173041 2330 False 2178.000000 2178 84.096000 777 3120 1 chr7B.!!$F1 2343
5 TraesCS7A01G397900 chr7B 535687980 535691802 3822 False 772.714286 2196 93.656714 641 4564 7 chr7B.!!$F3 3923
6 TraesCS7A01G397900 chr7B 535696116 535697350 1234 False 519.500000 889 91.511000 4575 5783 2 chr7B.!!$F4 1208
7 TraesCS7A01G397900 chr7B 99101425 99106099 4674 True 448.500000 902 83.887250 805 4823 4 chr7B.!!$R1 4018
8 TraesCS7A01G397900 chr5B 343719162 343723181 4019 False 974.000000 1648 83.657000 805 3120 2 chr5B.!!$F4 2315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 0.730840 GGGGAAATGGTTTAGCGACG 59.269 55.000 0.00 0.0 0.00 5.12 F
747 750 1.080025 GTTAAGCCCACGACGCTCT 60.080 57.895 0.00 0.0 34.84 4.09 F
1038 1049 2.062636 AGGGTTGTGGTGGAGTACAAT 58.937 47.619 0.00 0.0 38.84 2.71 F
2743 5855 0.116541 TATCCCTAGCCCAGTAGCCC 59.883 60.000 0.00 0.0 0.00 5.19 F
3520 6850 0.464036 TGTTACCTAGGGATGCAGCG 59.536 55.000 14.81 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 5343 2.852449 TGCAATCAAAGTTACCGGTCA 58.148 42.857 12.40 0.00 0.00 4.02 R
2636 5737 0.172578 CATGGAACGCTGACCTACGA 59.827 55.000 0.00 0.00 0.00 3.43 R
3223 6400 9.956720 GAACCATATGGAAGTTCAATCTAATTG 57.043 33.333 28.77 0.00 39.71 2.32 R
3612 6942 0.037790 GCATAAGCCCGCCAAAACAA 60.038 50.000 0.00 0.00 33.58 2.83 R
5488 9007 0.109086 CACTAGTGCACAGGTCTCGG 60.109 60.000 21.04 1.65 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 8.735837 GCGTTCTACGAAAATCTTGTTTAAAAA 58.264 29.630 3.04 0.00 46.05 1.94
135 136 7.464358 ACGAATGTAAGAGTATTTTGCATGAC 58.536 34.615 0.00 0.00 32.37 3.06
169 170 1.967319 AATGGCATACATGGGTCGAC 58.033 50.000 7.13 7.13 40.44 4.20
208 209 7.778470 TCCATGAACAAACCAATGTAAAAAC 57.222 32.000 0.00 0.00 32.02 2.43
256 257 3.305539 GGTGATGTGACATTGTTGCATGT 60.306 43.478 0.00 0.00 0.00 3.21
271 272 6.106003 TGTTGCATGTATAGTGAGGTACAAG 58.894 40.000 0.00 0.00 34.77 3.16
276 277 8.482943 TGCATGTATAGTGAGGTACAAGTATTT 58.517 33.333 0.00 0.00 34.77 1.40
335 336 4.814234 CAGGCGATGCAACTTTTATACCTA 59.186 41.667 0.00 0.00 0.00 3.08
360 361 0.730840 GGGGAAATGGTTTAGCGACG 59.269 55.000 0.00 0.00 0.00 5.12
361 362 0.730840 GGGAAATGGTTTAGCGACGG 59.269 55.000 0.00 0.00 0.00 4.79
606 608 9.629649 TTTAGGAATGGAGGGAGTACATATTAT 57.370 33.333 0.00 0.00 0.00 1.28
607 609 9.629649 TTAGGAATGGAGGGAGTACATATTATT 57.370 33.333 0.00 0.00 0.00 1.40
747 750 1.080025 GTTAAGCCCACGACGCTCT 60.080 57.895 0.00 0.00 34.84 4.09
803 806 4.452733 CTCCTCCCCAACGCGTCC 62.453 72.222 14.44 0.00 0.00 4.79
890 894 4.578898 CATACGCTGCCGGCCGTA 62.579 66.667 30.92 30.92 39.22 4.02
903 907 2.267961 CCGTACCAACCCTGCTCC 59.732 66.667 0.00 0.00 0.00 4.70
1038 1049 2.062636 AGGGTTGTGGTGGAGTACAAT 58.937 47.619 0.00 0.00 38.84 2.71
1179 2909 3.264845 GAGGACCCCAAGGCCCAA 61.265 66.667 0.00 0.00 36.11 4.12
1540 3292 4.389374 CTGTATATGTGGTCATGGAACCC 58.611 47.826 1.33 0.00 38.65 4.11
1688 3453 2.540769 CGTTACCTGTGTTGTGCTTTGG 60.541 50.000 0.00 0.00 0.00 3.28
1848 4348 9.515020 TTTGTTCTCTTCAACATTTTGTATGTC 57.485 29.630 0.00 0.00 36.16 3.06
1849 4349 8.219546 TGTTCTCTTCAACATTTTGTATGTCA 57.780 30.769 0.00 0.00 31.08 3.58
1901 4401 4.154015 TGCTCATTTCATTGAGTACCAACG 59.846 41.667 3.65 0.00 44.10 4.10
2150 4692 8.070171 CGTTTGGCATTTAATCCAGTTCTATAG 58.930 37.037 0.00 0.00 33.32 1.31
2169 5151 9.447279 TTCTATAGAAGGAATTAGGATCACCAA 57.553 33.333 11.24 0.00 38.94 3.67
2185 5167 6.756542 GGATCACCAATGGTTTTAGCATTTAC 59.243 38.462 0.16 0.00 43.00 2.01
2342 5347 6.992063 AGTCAATAAGATGTCATGTTGACC 57.008 37.500 18.00 6.68 46.40 4.02
2343 5348 5.582269 AGTCAATAAGATGTCATGTTGACCG 59.418 40.000 18.00 3.34 46.40 4.79
2344 5349 4.875536 TCAATAAGATGTCATGTTGACCGG 59.124 41.667 0.00 0.00 46.40 5.28
2345 5350 2.859165 AAGATGTCATGTTGACCGGT 57.141 45.000 6.92 6.92 46.40 5.28
2444 5455 4.595762 TTTGTAGCTGTCGGTAGTTTCT 57.404 40.909 0.00 0.00 0.00 2.52
2495 5508 6.366315 AGACGTCTACTAATCTTAGCAGTG 57.634 41.667 18.46 0.00 34.09 3.66
2589 5606 7.364149 TGTTTTGTTCACCTACTCCTACTTA 57.636 36.000 0.00 0.00 0.00 2.24
2736 5848 3.759581 CTTACGTACTATCCCTAGCCCA 58.240 50.000 0.00 0.00 0.00 5.36
2737 5849 2.289592 ACGTACTATCCCTAGCCCAG 57.710 55.000 0.00 0.00 0.00 4.45
2738 5850 1.498145 ACGTACTATCCCTAGCCCAGT 59.502 52.381 0.00 0.00 0.00 4.00
2739 5851 2.713167 ACGTACTATCCCTAGCCCAGTA 59.287 50.000 0.00 0.00 0.00 2.74
2740 5852 3.244840 ACGTACTATCCCTAGCCCAGTAG 60.245 52.174 0.00 0.00 0.00 2.57
2741 5853 2.312424 ACTATCCCTAGCCCAGTAGC 57.688 55.000 0.00 0.00 0.00 3.58
2742 5854 1.203199 ACTATCCCTAGCCCAGTAGCC 60.203 57.143 0.00 0.00 0.00 3.93
2743 5855 0.116541 TATCCCTAGCCCAGTAGCCC 59.883 60.000 0.00 0.00 0.00 5.19
2780 5948 2.863137 GAGAGAATACTGCTTTGGCTCG 59.137 50.000 0.00 0.00 39.59 5.03
3044 6220 6.259608 CCAATCTGCATAAGTAGAACCTGAAG 59.740 42.308 0.00 0.00 39.97 3.02
3223 6400 9.852091 TTATCTTTCGAGGAAGAGTTTACTAAC 57.148 33.333 5.82 0.00 38.90 2.34
3228 6405 9.985730 TTTCGAGGAAGAGTTTACTAACAATTA 57.014 29.630 0.00 0.00 36.70 1.40
3262 6439 2.610438 ATGGTTCTCTTGGGCACAAT 57.390 45.000 0.00 0.00 35.73 2.71
3319 6496 1.344438 TGCACACTAGTTCCTGGACTG 59.656 52.381 0.00 0.00 0.00 3.51
3511 6841 4.706842 ATTGCCCATACTGTTACCTAGG 57.293 45.455 7.41 7.41 0.00 3.02
3512 6842 2.404559 TGCCCATACTGTTACCTAGGG 58.595 52.381 14.81 0.00 37.87 3.53
3513 6843 2.022820 TGCCCATACTGTTACCTAGGGA 60.023 50.000 14.81 0.00 36.96 4.20
3514 6844 3.248888 GCCCATACTGTTACCTAGGGAT 58.751 50.000 14.81 0.00 36.96 3.85
3515 6845 3.008049 GCCCATACTGTTACCTAGGGATG 59.992 52.174 14.81 0.00 36.96 3.51
3516 6846 3.008049 CCCATACTGTTACCTAGGGATGC 59.992 52.174 14.81 1.10 36.96 3.91
3517 6847 3.646162 CCATACTGTTACCTAGGGATGCA 59.354 47.826 14.81 6.17 0.00 3.96
3518 6848 4.262635 CCATACTGTTACCTAGGGATGCAG 60.263 50.000 19.24 19.24 0.00 4.41
3519 6849 1.486726 ACTGTTACCTAGGGATGCAGC 59.513 52.381 20.26 0.00 0.00 5.25
3520 6850 0.464036 TGTTACCTAGGGATGCAGCG 59.536 55.000 14.81 0.00 0.00 5.18
3521 6851 0.750850 GTTACCTAGGGATGCAGCGA 59.249 55.000 14.81 0.00 0.00 4.93
3522 6852 1.040646 TTACCTAGGGATGCAGCGAG 58.959 55.000 14.81 0.00 0.00 5.03
3523 6853 0.827925 TACCTAGGGATGCAGCGAGG 60.828 60.000 14.81 12.99 0.00 4.63
3524 6854 2.030262 CTAGGGATGCAGCGAGGC 59.970 66.667 0.00 0.00 0.00 4.70
3525 6855 3.855352 CTAGGGATGCAGCGAGGCG 62.855 68.421 0.00 0.00 36.28 5.52
3543 6873 4.918201 CCCGATCCGCCAGGCTTC 62.918 72.222 10.54 2.84 37.47 3.86
3545 6875 4.514577 CGATCCGCCAGGCTTCGT 62.515 66.667 10.54 0.00 37.78 3.85
3546 6876 2.812499 GATCCGCCAGGCTTCGTA 59.188 61.111 10.54 0.00 37.47 3.43
3547 6877 1.300233 GATCCGCCAGGCTTCGTAG 60.300 63.158 10.54 0.00 37.47 3.51
3548 6878 2.017559 GATCCGCCAGGCTTCGTAGT 62.018 60.000 10.54 0.00 37.47 2.73
3549 6879 2.017559 ATCCGCCAGGCTTCGTAGTC 62.018 60.000 10.54 0.00 37.47 2.59
3550 6880 2.571757 CGCCAGGCTTCGTAGTCA 59.428 61.111 10.54 0.00 0.00 3.41
3551 6881 1.080093 CGCCAGGCTTCGTAGTCAA 60.080 57.895 10.54 0.00 0.00 3.18
3552 6882 0.669318 CGCCAGGCTTCGTAGTCAAA 60.669 55.000 10.54 0.00 0.00 2.69
3553 6883 1.079503 GCCAGGCTTCGTAGTCAAAG 58.920 55.000 3.29 0.00 0.00 2.77
3554 6884 1.608283 GCCAGGCTTCGTAGTCAAAGT 60.608 52.381 3.29 0.00 0.00 2.66
3555 6885 2.353406 GCCAGGCTTCGTAGTCAAAGTA 60.353 50.000 3.29 0.00 0.00 2.24
3556 6886 3.512680 CCAGGCTTCGTAGTCAAAGTAG 58.487 50.000 0.00 0.00 0.00 2.57
3557 6887 3.192844 CCAGGCTTCGTAGTCAAAGTAGA 59.807 47.826 0.00 0.00 0.00 2.59
3558 6888 4.142138 CCAGGCTTCGTAGTCAAAGTAGAT 60.142 45.833 0.00 0.00 0.00 1.98
3559 6889 5.038033 CAGGCTTCGTAGTCAAAGTAGATC 58.962 45.833 0.00 0.00 0.00 2.75
3560 6890 4.705507 AGGCTTCGTAGTCAAAGTAGATCA 59.294 41.667 0.00 0.00 0.00 2.92
3561 6891 5.185249 AGGCTTCGTAGTCAAAGTAGATCAA 59.815 40.000 0.00 0.00 0.00 2.57
3562 6892 5.288952 GGCTTCGTAGTCAAAGTAGATCAAC 59.711 44.000 0.00 0.00 0.00 3.18
3563 6893 6.094061 GCTTCGTAGTCAAAGTAGATCAACT 58.906 40.000 0.00 0.00 0.00 3.16
3564 6894 6.586844 GCTTCGTAGTCAAAGTAGATCAACTT 59.413 38.462 0.00 0.00 41.46 2.66
3565 6895 7.754027 GCTTCGTAGTCAAAGTAGATCAACTTA 59.246 37.037 0.00 0.00 38.76 2.24
3566 6896 9.279904 CTTCGTAGTCAAAGTAGATCAACTTAG 57.720 37.037 0.00 0.00 38.76 2.18
3567 6897 8.332996 TCGTAGTCAAAGTAGATCAACTTAGT 57.667 34.615 0.00 0.00 38.76 2.24
3568 6898 8.790718 TCGTAGTCAAAGTAGATCAACTTAGTT 58.209 33.333 0.00 0.00 38.76 2.24
3580 6910 7.897864 AGATCAACTTAGTTATAATCCTCCCG 58.102 38.462 0.00 0.00 0.00 5.14
3581 6911 6.415206 TCAACTTAGTTATAATCCTCCCGG 57.585 41.667 0.00 0.00 0.00 5.73
3582 6912 5.901276 TCAACTTAGTTATAATCCTCCCGGT 59.099 40.000 0.00 0.00 0.00 5.28
3583 6913 6.384886 TCAACTTAGTTATAATCCTCCCGGTT 59.615 38.462 0.00 0.00 0.00 4.44
3584 6914 6.416631 ACTTAGTTATAATCCTCCCGGTTC 57.583 41.667 0.00 0.00 0.00 3.62
3585 6915 5.901276 ACTTAGTTATAATCCTCCCGGTTCA 59.099 40.000 0.00 0.00 0.00 3.18
3586 6916 4.957684 AGTTATAATCCTCCCGGTTCAG 57.042 45.455 0.00 0.00 0.00 3.02
3587 6917 3.071167 AGTTATAATCCTCCCGGTTCAGC 59.929 47.826 0.00 0.00 0.00 4.26
3588 6918 1.807814 ATAATCCTCCCGGTTCAGCT 58.192 50.000 0.00 0.00 0.00 4.24
3589 6919 1.580059 TAATCCTCCCGGTTCAGCTT 58.420 50.000 0.00 0.00 0.00 3.74
3590 6920 0.698818 AATCCTCCCGGTTCAGCTTT 59.301 50.000 0.00 0.00 0.00 3.51
3591 6921 1.580059 ATCCTCCCGGTTCAGCTTTA 58.420 50.000 0.00 0.00 0.00 1.85
3592 6922 0.902531 TCCTCCCGGTTCAGCTTTAG 59.097 55.000 0.00 0.00 0.00 1.85
3593 6923 0.613777 CCTCCCGGTTCAGCTTTAGT 59.386 55.000 0.00 0.00 0.00 2.24
3594 6924 1.003233 CCTCCCGGTTCAGCTTTAGTT 59.997 52.381 0.00 0.00 0.00 2.24
3595 6925 2.347731 CTCCCGGTTCAGCTTTAGTTC 58.652 52.381 0.00 0.00 0.00 3.01
3596 6926 1.695242 TCCCGGTTCAGCTTTAGTTCA 59.305 47.619 0.00 0.00 0.00 3.18
3597 6927 2.076863 CCCGGTTCAGCTTTAGTTCAG 58.923 52.381 0.00 0.00 0.00 3.02
3598 6928 2.550208 CCCGGTTCAGCTTTAGTTCAGT 60.550 50.000 0.00 0.00 0.00 3.41
3599 6929 3.139077 CCGGTTCAGCTTTAGTTCAGTT 58.861 45.455 0.00 0.00 0.00 3.16
3600 6930 3.564225 CCGGTTCAGCTTTAGTTCAGTTT 59.436 43.478 0.00 0.00 0.00 2.66
3601 6931 4.527564 CGGTTCAGCTTTAGTTCAGTTTG 58.472 43.478 0.00 0.00 0.00 2.93
3602 6932 4.272504 CGGTTCAGCTTTAGTTCAGTTTGA 59.727 41.667 0.00 0.00 0.00 2.69
3603 6933 5.220777 CGGTTCAGCTTTAGTTCAGTTTGAA 60.221 40.000 0.00 0.00 33.32 2.69
3620 6950 9.364989 TCAGTTTGAACTAAATTCTTGTTTTGG 57.635 29.630 0.00 0.00 37.08 3.28
3621 6951 8.116136 CAGTTTGAACTAAATTCTTGTTTTGGC 58.884 33.333 0.00 0.00 37.08 4.52
3622 6952 6.820470 TTGAACTAAATTCTTGTTTTGGCG 57.180 33.333 0.00 0.00 38.25 5.69
3623 6953 5.285651 TGAACTAAATTCTTGTTTTGGCGG 58.714 37.500 0.00 0.00 38.25 6.13
3624 6954 4.251543 ACTAAATTCTTGTTTTGGCGGG 57.748 40.909 0.00 0.00 0.00 6.13
3625 6955 1.877637 AAATTCTTGTTTTGGCGGGC 58.122 45.000 0.00 0.00 0.00 6.13
3626 6956 1.047801 AATTCTTGTTTTGGCGGGCT 58.952 45.000 2.38 0.00 0.00 5.19
3627 6957 1.047801 ATTCTTGTTTTGGCGGGCTT 58.952 45.000 2.38 0.00 0.00 4.35
3628 6958 1.693627 TTCTTGTTTTGGCGGGCTTA 58.306 45.000 2.38 0.00 0.00 3.09
3629 6959 1.917872 TCTTGTTTTGGCGGGCTTAT 58.082 45.000 2.38 0.00 0.00 1.73
3630 6960 1.543802 TCTTGTTTTGGCGGGCTTATG 59.456 47.619 2.38 0.00 0.00 1.90
3631 6961 0.037790 TTGTTTTGGCGGGCTTATGC 60.038 50.000 2.38 0.00 38.76 3.14
3632 6962 1.516169 GTTTTGGCGGGCTTATGCG 60.516 57.895 2.38 0.00 40.82 4.73
3633 6963 2.705821 TTTTGGCGGGCTTATGCGG 61.706 57.895 2.38 0.00 40.82 5.69
3636 6966 4.643387 GGCGGGCTTATGCGGGAT 62.643 66.667 0.00 0.00 40.82 3.85
3637 6967 3.357079 GCGGGCTTATGCGGGATG 61.357 66.667 0.00 0.00 40.82 3.51
3638 6968 3.357079 CGGGCTTATGCGGGATGC 61.357 66.667 0.00 0.00 46.70 3.91
3639 6969 2.985847 GGGCTTATGCGGGATGCC 60.986 66.667 2.70 2.70 45.60 4.40
3640 6970 2.985847 GGCTTATGCGGGATGCCC 60.986 66.667 0.00 0.00 45.60 5.36
3653 6983 3.407083 TGCCCGCTTGCATCCCTA 61.407 61.111 0.00 0.00 36.04 3.53
3654 6984 2.902343 GCCCGCTTGCATCCCTAC 60.902 66.667 0.00 0.00 0.00 3.18
3655 6985 2.911143 CCCGCTTGCATCCCTACT 59.089 61.111 0.00 0.00 0.00 2.57
3656 6986 1.524621 CCCGCTTGCATCCCTACTG 60.525 63.158 0.00 0.00 0.00 2.74
3657 6987 1.221840 CCGCTTGCATCCCTACTGT 59.778 57.895 0.00 0.00 0.00 3.55
3658 6988 0.392998 CCGCTTGCATCCCTACTGTT 60.393 55.000 0.00 0.00 0.00 3.16
3659 6989 1.134521 CCGCTTGCATCCCTACTGTTA 60.135 52.381 0.00 0.00 0.00 2.41
3660 6990 1.933853 CGCTTGCATCCCTACTGTTAC 59.066 52.381 0.00 0.00 0.00 2.50
3661 6991 2.289565 GCTTGCATCCCTACTGTTACC 58.710 52.381 0.00 0.00 0.00 2.85
3662 6992 2.092914 GCTTGCATCCCTACTGTTACCT 60.093 50.000 0.00 0.00 0.00 3.08
3663 6993 3.134081 GCTTGCATCCCTACTGTTACCTA 59.866 47.826 0.00 0.00 0.00 3.08
3664 6994 4.694339 CTTGCATCCCTACTGTTACCTAC 58.306 47.826 0.00 0.00 0.00 3.18
3711 7041 8.445275 ACTTCTGTAAATGTTGTGTATGACAA 57.555 30.769 0.00 0.00 42.55 3.18
3756 7086 6.067217 ACCCTTTATTCTTCACAGTAGCAT 57.933 37.500 0.00 0.00 0.00 3.79
3897 7229 9.817809 TGAAATTCACTACACATACTTATCTCC 57.182 33.333 0.00 0.00 0.00 3.71
3991 7323 1.022735 CCATTGATGTGCTGGAGAGC 58.977 55.000 0.00 0.00 46.44 4.09
3992 7324 1.408405 CCATTGATGTGCTGGAGAGCT 60.408 52.381 0.00 0.00 46.39 4.09
4000 7342 3.861840 TGTGCTGGAGAGCTATTTACAC 58.138 45.455 0.00 0.00 46.39 2.90
4058 7400 7.994911 TGGTGATGTTTAGATGCAATATTCTCT 59.005 33.333 0.00 0.00 0.00 3.10
4059 7401 8.502387 GGTGATGTTTAGATGCAATATTCTCTC 58.498 37.037 0.00 0.00 0.00 3.20
4060 7402 8.502387 GTGATGTTTAGATGCAATATTCTCTCC 58.498 37.037 0.00 0.00 0.00 3.71
4061 7403 7.663081 TGATGTTTAGATGCAATATTCTCTCCC 59.337 37.037 0.00 0.00 0.00 4.30
4062 7404 6.299141 TGTTTAGATGCAATATTCTCTCCCC 58.701 40.000 0.00 0.00 0.00 4.81
4063 7405 6.126507 TGTTTAGATGCAATATTCTCTCCCCA 60.127 38.462 0.00 0.00 0.00 4.96
4064 7406 4.637387 AGATGCAATATTCTCTCCCCAG 57.363 45.455 0.00 0.00 0.00 4.45
4065 7407 4.237843 AGATGCAATATTCTCTCCCCAGA 58.762 43.478 0.00 0.00 0.00 3.86
4066 7408 3.845781 TGCAATATTCTCTCCCCAGAC 57.154 47.619 0.00 0.00 0.00 3.51
4067 7409 2.439507 TGCAATATTCTCTCCCCAGACC 59.560 50.000 0.00 0.00 0.00 3.85
4068 7410 2.224646 GCAATATTCTCTCCCCAGACCC 60.225 54.545 0.00 0.00 0.00 4.46
4069 7411 2.373502 CAATATTCTCTCCCCAGACCCC 59.626 54.545 0.00 0.00 0.00 4.95
4070 7412 1.023719 TATTCTCTCCCCAGACCCCA 58.976 55.000 0.00 0.00 0.00 4.96
4071 7413 0.621862 ATTCTCTCCCCAGACCCCAC 60.622 60.000 0.00 0.00 0.00 4.61
4072 7414 2.689034 CTCTCCCCAGACCCCACC 60.689 72.222 0.00 0.00 0.00 4.61
4073 7415 3.208592 TCTCCCCAGACCCCACCT 61.209 66.667 0.00 0.00 0.00 4.00
4074 7416 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
4075 7417 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
4076 7418 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
4077 7419 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
4078 7420 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
4079 7421 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
4086 7428 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
4087 7429 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
4088 7430 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
4089 7431 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
4090 7432 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
4091 7433 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
4092 7434 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
4093 7435 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
4094 7436 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
4095 7437 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
4096 7438 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
4097 7439 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
4098 7440 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
4099 7441 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
4100 7442 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
4101 7443 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
4102 7444 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
4103 7445 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
4104 7446 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
4105 7447 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
4106 7448 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
4107 7449 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
4108 7450 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
4109 7451 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
4110 7452 1.064017 TGCACTGGGTCTGTCCTTTTT 60.064 47.619 0.00 0.00 36.25 1.94
4338 7712 4.712476 ACATACTACTCGTTCCTACCGAT 58.288 43.478 0.00 0.00 33.27 4.18
4339 7713 4.754114 ACATACTACTCGTTCCTACCGATC 59.246 45.833 0.00 0.00 33.27 3.69
4340 7714 2.570135 ACTACTCGTTCCTACCGATCC 58.430 52.381 0.00 0.00 33.27 3.36
4411 7822 1.425066 TGAATTGAGGTGCTCCTTGGT 59.575 47.619 9.08 0.00 45.24 3.67
4430 7841 2.348666 GGTATATCCGCGTCATTCATGC 59.651 50.000 4.92 0.00 0.00 4.06
4431 7842 1.442769 ATATCCGCGTCATTCATGCC 58.557 50.000 4.92 0.00 32.72 4.40
4567 7983 1.191535 GGGGGTTTCTTTATGGCACC 58.808 55.000 0.00 0.00 0.00 5.01
4568 7984 1.191535 GGGGTTTCTTTATGGCACCC 58.808 55.000 0.00 0.00 45.81 4.61
4569 7985 1.191535 GGGTTTCTTTATGGCACCCC 58.808 55.000 0.00 0.00 41.31 4.95
4571 7987 1.548719 GGTTTCTTTATGGCACCCCAC 59.451 52.381 0.00 0.00 45.77 4.61
4572 7988 1.548719 GTTTCTTTATGGCACCCCACC 59.451 52.381 0.00 0.00 45.77 4.61
4605 8106 5.066375 TGCTTGAATTTTCCATCCGATGTAG 59.934 40.000 7.60 0.00 0.00 2.74
4858 8375 1.401931 CGCATTTGGGAGCTTGTCTTG 60.402 52.381 0.00 0.00 0.00 3.02
4860 8377 2.094854 GCATTTGGGAGCTTGTCTTGAG 60.095 50.000 0.00 0.00 0.00 3.02
4861 8378 2.276732 TTTGGGAGCTTGTCTTGAGG 57.723 50.000 0.00 0.00 0.00 3.86
4862 8379 1.140312 TTGGGAGCTTGTCTTGAGGT 58.860 50.000 0.00 0.00 0.00 3.85
4863 8380 0.687354 TGGGAGCTTGTCTTGAGGTC 59.313 55.000 0.00 0.00 40.10 3.85
4864 8381 0.980423 GGGAGCTTGTCTTGAGGTCT 59.020 55.000 0.00 0.00 40.52 3.85
4865 8382 1.349357 GGGAGCTTGTCTTGAGGTCTT 59.651 52.381 0.00 0.00 40.52 3.01
4866 8383 2.614229 GGGAGCTTGTCTTGAGGTCTTC 60.614 54.545 0.00 0.00 40.52 2.87
4867 8384 2.037772 GGAGCTTGTCTTGAGGTCTTCA 59.962 50.000 0.00 0.00 40.52 3.02
4868 8385 3.307339 GGAGCTTGTCTTGAGGTCTTCAT 60.307 47.826 0.00 0.00 40.52 2.57
4869 8386 4.322567 GAGCTTGTCTTGAGGTCTTCATT 58.677 43.478 0.00 0.00 38.33 2.57
4870 8387 4.070716 AGCTTGTCTTGAGGTCTTCATTG 58.929 43.478 0.00 0.00 35.27 2.82
4871 8388 4.067896 GCTTGTCTTGAGGTCTTCATTGA 58.932 43.478 0.00 0.00 35.27 2.57
4872 8389 4.083590 GCTTGTCTTGAGGTCTTCATTGAC 60.084 45.833 9.95 9.95 38.76 3.18
4935 8452 1.953559 TTCTCGGAACATGCTATGCC 58.046 50.000 0.00 0.00 0.00 4.40
5052 8571 4.119862 GGTATTCACTGCGCATTTCTCTA 58.880 43.478 12.24 0.00 0.00 2.43
5091 8610 4.507756 TGCTGTAATCATGTTCGTAGCATC 59.492 41.667 10.88 0.00 35.27 3.91
5105 8624 1.238439 AGCATCAGTTTCAACACGGG 58.762 50.000 0.00 0.00 0.00 5.28
5111 8630 1.106944 AGTTTCAACACGGGCCCTTG 61.107 55.000 26.13 26.13 0.00 3.61
5466 8985 1.618343 ACCGGCTGCTTAGCAATTTTT 59.382 42.857 8.68 0.00 38.41 1.94
5488 9007 3.916761 TGCTGGAAACAAAATGATGAGC 58.083 40.909 0.00 0.00 42.06 4.26
5499 9018 0.463204 ATGATGAGCCGAGACCTGTG 59.537 55.000 0.00 0.00 0.00 3.66
5500 9019 1.520342 GATGAGCCGAGACCTGTGC 60.520 63.158 0.00 0.00 0.00 4.57
5506 9025 1.878656 GCCGAGACCTGTGCACTAGT 61.879 60.000 19.41 15.02 0.00 2.57
5509 9028 1.000163 CGAGACCTGTGCACTAGTGTT 60.000 52.381 23.44 5.86 0.00 3.32
5515 9034 5.296035 AGACCTGTGCACTAGTGTTAAAAAC 59.704 40.000 23.44 12.59 0.00 2.43
5516 9035 4.944930 ACCTGTGCACTAGTGTTAAAAACA 59.055 37.500 23.44 15.77 39.52 2.83
5539 9058 7.837863 ACACTACTATATTATGGAACGGATGG 58.162 38.462 0.00 0.00 0.00 3.51
5543 9062 9.404848 CTACTATATTATGGAACGGATGGAGTA 57.595 37.037 0.00 0.00 0.00 2.59
5545 9064 8.915036 ACTATATTATGGAACGGATGGAGTATC 58.085 37.037 0.00 0.00 34.93 2.24
5547 9066 6.688073 ATTATGGAACGGATGGAGTATCTT 57.312 37.500 0.00 0.00 36.03 2.40
5548 9067 4.608948 ATGGAACGGATGGAGTATCTTC 57.391 45.455 0.00 0.00 36.03 2.87
5549 9068 3.371034 TGGAACGGATGGAGTATCTTCA 58.629 45.455 0.00 0.00 36.03 3.02
5551 9070 4.039245 TGGAACGGATGGAGTATCTTCATC 59.961 45.833 8.95 8.95 43.70 2.92
5562 9081 7.244558 TGGAGTATCTTCATCCATCAGATAGT 58.755 38.462 0.00 0.00 38.19 2.12
5568 9087 6.685657 TCTTCATCCATCAGATAGTCAATCG 58.314 40.000 0.00 0.00 39.79 3.34
5569 9088 6.266330 TCTTCATCCATCAGATAGTCAATCGT 59.734 38.462 0.00 0.00 39.79 3.73
5570 9089 6.410942 TCATCCATCAGATAGTCAATCGTT 57.589 37.500 0.00 0.00 39.79 3.85
5571 9090 6.450545 TCATCCATCAGATAGTCAATCGTTC 58.549 40.000 0.00 0.00 39.79 3.95
5572 9091 5.852282 TCCATCAGATAGTCAATCGTTCA 57.148 39.130 0.00 0.00 39.79 3.18
5573 9092 6.410942 TCCATCAGATAGTCAATCGTTCAT 57.589 37.500 0.00 0.00 39.79 2.57
5575 9094 5.107182 CCATCAGATAGTCAATCGTTCATGC 60.107 44.000 0.00 0.00 39.79 4.06
5576 9095 5.009854 TCAGATAGTCAATCGTTCATGCA 57.990 39.130 0.00 0.00 39.79 3.96
5577 9096 5.604565 TCAGATAGTCAATCGTTCATGCAT 58.395 37.500 0.00 0.00 39.79 3.96
5578 9097 5.693555 TCAGATAGTCAATCGTTCATGCATC 59.306 40.000 0.00 0.00 39.79 3.91
5579 9098 4.683320 AGATAGTCAATCGTTCATGCATCG 59.317 41.667 0.00 0.00 39.79 3.84
5580 9099 2.621338 AGTCAATCGTTCATGCATCGT 58.379 42.857 0.00 0.00 0.00 3.73
5581 9100 2.349580 AGTCAATCGTTCATGCATCGTG 59.650 45.455 0.00 0.00 0.00 4.35
5582 9101 1.062440 TCAATCGTTCATGCATCGTGC 59.938 47.619 0.00 3.44 45.29 5.34
5592 9111 3.576356 CATCGTGCATGGCGGGTC 61.576 66.667 5.98 0.00 0.00 4.46
5617 9136 5.209944 CTTTGAAGCAGTTTCGGAGTATC 57.790 43.478 0.00 0.00 38.71 2.24
5618 9137 4.537135 TTGAAGCAGTTTCGGAGTATCT 57.463 40.909 0.00 0.00 38.71 1.98
5619 9138 4.537135 TGAAGCAGTTTCGGAGTATCTT 57.463 40.909 0.00 0.00 38.71 2.40
5620 9139 4.894784 TGAAGCAGTTTCGGAGTATCTTT 58.105 39.130 0.00 0.00 38.71 2.52
5621 9140 4.690748 TGAAGCAGTTTCGGAGTATCTTTG 59.309 41.667 0.00 0.00 38.71 2.77
5622 9141 3.003480 AGCAGTTTCGGAGTATCTTTGC 58.997 45.455 0.00 0.00 33.73 3.68
5623 9142 2.096013 GCAGTTTCGGAGTATCTTTGCC 59.904 50.000 0.00 0.00 33.73 4.52
5638 9157 3.745975 TCTTTGCCGTGATACAGTTTCTG 59.254 43.478 0.00 0.00 37.52 3.02
5646 9165 4.559251 CGTGATACAGTTTCTGCACTAGAC 59.441 45.833 0.00 0.00 34.43 2.59
5656 9175 5.868043 TTCTGCACTAGACAAACATCATG 57.132 39.130 0.00 0.00 34.43 3.07
5665 9184 7.547019 CACTAGACAAACATCATGAAGCTTAGA 59.453 37.037 0.00 0.00 0.00 2.10
5667 9186 6.705302 AGACAAACATCATGAAGCTTAGAGA 58.295 36.000 0.00 0.00 0.00 3.10
5668 9187 7.337167 AGACAAACATCATGAAGCTTAGAGAT 58.663 34.615 0.00 0.00 0.00 2.75
5669 9188 7.495279 AGACAAACATCATGAAGCTTAGAGATC 59.505 37.037 0.00 0.00 0.00 2.75
5670 9189 6.541641 ACAAACATCATGAAGCTTAGAGATCC 59.458 38.462 0.00 0.00 0.00 3.36
5671 9190 5.883685 ACATCATGAAGCTTAGAGATCCA 57.116 39.130 0.00 0.00 0.00 3.41
5672 9191 5.856156 ACATCATGAAGCTTAGAGATCCAG 58.144 41.667 0.00 0.00 0.00 3.86
5673 9192 4.333913 TCATGAAGCTTAGAGATCCAGC 57.666 45.455 0.00 0.00 0.00 4.85
5678 9480 1.127343 GCTTAGAGATCCAGCAGGGT 58.873 55.000 0.00 0.00 38.11 4.34
5711 9513 4.626081 AGCGGCAAGGCGTGTCTT 62.626 61.111 17.26 0.00 38.18 3.01
5719 9521 3.782244 GGCGTGTCTTGCTCTGCG 61.782 66.667 0.00 0.00 0.00 5.18
5732 9534 2.743928 CTGCGGCCTGAGTTGGAC 60.744 66.667 0.00 0.00 0.00 4.02
5733 9535 3.241530 TGCGGCCTGAGTTGGACT 61.242 61.111 0.00 0.00 31.45 3.85
5735 9537 2.266055 CGGCCTGAGTTGGACTCC 59.734 66.667 0.00 0.00 44.44 3.85
5754 9556 2.380410 CGCGCCACACTTGTCCTAC 61.380 63.158 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.457035 GTAGAACGCACGGGGTATCA 59.543 55.000 0.00 0.00 0.00 2.15
163 164 0.949105 AACATGCAACCTCGTCGACC 60.949 55.000 10.58 0.00 0.00 4.79
218 219 7.442364 GTCACATCACCAAGTTATGCATATAGT 59.558 37.037 7.36 0.00 0.00 2.12
276 277 9.589461 CCTTGTTCTAGGTATTCTCTATTCCTA 57.411 37.037 0.00 0.00 35.76 2.94
335 336 2.297880 GCTAAACCATTTCCCCACGTTT 59.702 45.455 0.00 0.00 0.00 3.60
360 361 1.216710 CTCTCAACGTGCTCTCCCC 59.783 63.158 0.00 0.00 0.00 4.81
361 362 1.446966 GCTCTCAACGTGCTCTCCC 60.447 63.158 0.00 0.00 0.00 4.30
437 438 8.254178 TCGCATAAAGAGAAAATAAAACGGTA 57.746 30.769 0.00 0.00 0.00 4.02
555 557 6.952935 ATAAGCACTTTTAGAGACTTCACG 57.047 37.500 0.00 0.00 31.21 4.35
567 569 9.136323 CCTCCATTCCTAAATATAAGCACTTTT 57.864 33.333 0.00 0.00 0.00 2.27
573 575 7.021998 ACTCCCTCCATTCCTAAATATAAGC 57.978 40.000 0.00 0.00 0.00 3.09
747 750 0.750850 GTTGCTATAGTGCGGGGAGA 59.249 55.000 0.84 0.00 35.36 3.71
861 865 2.171725 GCGTATGGTGAAGGCGGAC 61.172 63.158 0.00 0.00 0.00 4.79
888 892 1.065636 GGTTAGGAGCAGGGTTGGTAC 60.066 57.143 0.00 0.00 35.82 3.34
890 894 1.838073 CGGTTAGGAGCAGGGTTGGT 61.838 60.000 0.00 0.00 37.84 3.67
892 896 0.391263 GACGGTTAGGAGCAGGGTTG 60.391 60.000 0.00 0.00 0.00 3.77
894 898 0.971447 GAGACGGTTAGGAGCAGGGT 60.971 60.000 0.00 0.00 0.00 4.34
903 907 2.389715 AGGAATCCTGGAGACGGTTAG 58.610 52.381 0.00 0.00 29.57 2.34
1023 1034 0.036765 GCGGATTGTACTCCACCACA 60.037 55.000 2.39 0.00 34.78 4.17
1653 3416 5.065602 CACAGGTAACGCTACATCTGTACTA 59.934 44.000 7.33 0.00 46.39 1.82
1654 3417 4.015084 ACAGGTAACGCTACATCTGTACT 58.985 43.478 6.21 0.00 46.39 2.73
1655 3418 4.103357 CACAGGTAACGCTACATCTGTAC 58.897 47.826 7.33 0.00 46.39 2.90
1688 3453 6.483307 TGTGAAACATGATATAAGGCTACAGC 59.517 38.462 0.00 0.00 45.67 4.40
1848 4348 5.174395 GCAGACCAGCTATATAATCACCTG 58.826 45.833 0.00 0.00 0.00 4.00
1849 4349 4.840680 TGCAGACCAGCTATATAATCACCT 59.159 41.667 0.00 0.00 34.99 4.00
1927 4428 3.084039 GGTGAAGTGATTCAATGCCAGA 58.916 45.455 0.00 0.00 32.04 3.86
2150 4692 5.449553 ACCATTGGTGATCCTAATTCCTTC 58.550 41.667 7.76 0.00 32.98 3.46
2169 5151 7.480760 ACTGGATTGTAAATGCTAAAACCAT 57.519 32.000 0.00 0.00 0.00 3.55
2185 5167 3.838244 TCCCCTTATCGAACTGGATTG 57.162 47.619 0.00 0.00 0.00 2.67
2333 5338 5.153513 CAATCAAAGTTACCGGTCAACATG 58.846 41.667 12.40 15.86 0.00 3.21
2334 5339 4.320935 GCAATCAAAGTTACCGGTCAACAT 60.321 41.667 12.40 4.58 0.00 2.71
2335 5340 3.003897 GCAATCAAAGTTACCGGTCAACA 59.996 43.478 12.40 0.00 0.00 3.33
2336 5341 3.003897 TGCAATCAAAGTTACCGGTCAAC 59.996 43.478 12.40 14.27 0.00 3.18
2337 5342 3.215151 TGCAATCAAAGTTACCGGTCAA 58.785 40.909 12.40 0.62 0.00 3.18
2338 5343 2.852449 TGCAATCAAAGTTACCGGTCA 58.148 42.857 12.40 0.00 0.00 4.02
2339 5344 5.751243 ATATGCAATCAAAGTTACCGGTC 57.249 39.130 12.40 0.00 0.00 4.79
2340 5345 7.051623 TCTAATATGCAATCAAAGTTACCGGT 58.948 34.615 13.98 13.98 0.00 5.28
2341 5346 7.490962 TCTAATATGCAATCAAAGTTACCGG 57.509 36.000 0.00 0.00 0.00 5.28
2342 5347 8.993121 AGATCTAATATGCAATCAAAGTTACCG 58.007 33.333 0.00 0.00 0.00 4.02
2426 5436 3.572604 ACAGAAACTACCGACAGCTAC 57.427 47.619 0.00 0.00 0.00 3.58
2475 5488 4.036971 AGGCACTGCTAAGATTAGTAGACG 59.963 45.833 20.23 13.08 43.48 4.18
2495 5508 2.802719 TGGACACCCAAGAATAAAGGC 58.197 47.619 0.00 0.00 40.09 4.35
2619 5712 5.482878 ACCTACGAAATTAAACCCTGAGAGA 59.517 40.000 0.00 0.00 0.00 3.10
2625 5718 4.259356 GCTGACCTACGAAATTAAACCCT 58.741 43.478 0.00 0.00 0.00 4.34
2626 5719 3.063045 CGCTGACCTACGAAATTAAACCC 59.937 47.826 0.00 0.00 0.00 4.11
2627 5720 3.681417 ACGCTGACCTACGAAATTAAACC 59.319 43.478 0.00 0.00 0.00 3.27
2629 5722 4.389687 GGAACGCTGACCTACGAAATTAAA 59.610 41.667 0.00 0.00 0.00 1.52
2630 5723 3.928375 GGAACGCTGACCTACGAAATTAA 59.072 43.478 0.00 0.00 0.00 1.40
2636 5737 0.172578 CATGGAACGCTGACCTACGA 59.827 55.000 0.00 0.00 0.00 3.43
3223 6400 9.956720 GAACCATATGGAAGTTCAATCTAATTG 57.043 33.333 28.77 0.00 39.71 2.32
3228 6405 7.205515 AGAGAACCATATGGAAGTTCAATCT 57.794 36.000 28.77 16.31 41.86 2.40
3373 6550 5.654650 TGTCTGGTTGTGTCTGGTTAAAATT 59.345 36.000 0.00 0.00 0.00 1.82
3526 6856 4.918201 GAAGCCTGGCGGATCGGG 62.918 72.222 13.96 0.00 36.28 5.14
3528 6858 3.133767 TACGAAGCCTGGCGGATCG 62.134 63.158 29.47 29.47 42.97 3.69
3529 6859 1.300233 CTACGAAGCCTGGCGGATC 60.300 63.158 13.96 12.06 0.00 3.36
3530 6860 2.017559 GACTACGAAGCCTGGCGGAT 62.018 60.000 13.96 3.47 0.00 4.18
3531 6861 2.678934 ACTACGAAGCCTGGCGGA 60.679 61.111 13.96 0.00 0.00 5.54
3532 6862 2.202756 GACTACGAAGCCTGGCGG 60.203 66.667 13.96 9.39 0.00 6.13
3533 6863 0.669318 TTTGACTACGAAGCCTGGCG 60.669 55.000 13.96 1.26 0.00 5.69
3534 6864 1.079503 CTTTGACTACGAAGCCTGGC 58.920 55.000 11.65 11.65 31.81 4.85
3535 6865 2.457366 ACTTTGACTACGAAGCCTGG 57.543 50.000 0.00 0.00 40.21 4.45
3536 6866 4.436242 TCTACTTTGACTACGAAGCCTG 57.564 45.455 0.00 0.00 40.21 4.85
3537 6867 4.705507 TGATCTACTTTGACTACGAAGCCT 59.294 41.667 0.00 0.00 40.21 4.58
3538 6868 4.995124 TGATCTACTTTGACTACGAAGCC 58.005 43.478 0.00 0.00 40.21 4.35
3539 6869 6.094061 AGTTGATCTACTTTGACTACGAAGC 58.906 40.000 3.80 0.00 40.21 3.86
3540 6870 9.279904 CTAAGTTGATCTACTTTGACTACGAAG 57.720 37.037 24.20 10.85 41.76 3.79
3541 6871 8.790718 ACTAAGTTGATCTACTTTGACTACGAA 58.209 33.333 27.65 9.68 39.08 3.85
3542 6872 8.332996 ACTAAGTTGATCTACTTTGACTACGA 57.667 34.615 27.65 10.24 39.08 3.43
3543 6873 8.967552 AACTAAGTTGATCTACTTTGACTACG 57.032 34.615 27.65 12.57 39.08 3.51
3554 6884 9.021807 CGGGAGGATTATAACTAAGTTGATCTA 57.978 37.037 0.00 0.00 0.00 1.98
3555 6885 7.897864 CGGGAGGATTATAACTAAGTTGATCT 58.102 38.462 0.00 0.00 0.00 2.75
3575 6905 2.289444 TGAACTAAAGCTGAACCGGGAG 60.289 50.000 6.32 0.00 0.00 4.30
3576 6906 1.695242 TGAACTAAAGCTGAACCGGGA 59.305 47.619 6.32 0.00 0.00 5.14
3577 6907 2.076863 CTGAACTAAAGCTGAACCGGG 58.923 52.381 6.32 0.00 0.00 5.73
3578 6908 2.767505 ACTGAACTAAAGCTGAACCGG 58.232 47.619 0.00 0.00 0.00 5.28
3579 6909 4.272504 TCAAACTGAACTAAAGCTGAACCG 59.727 41.667 0.00 0.00 0.00 4.44
3580 6910 5.751243 TCAAACTGAACTAAAGCTGAACC 57.249 39.130 0.00 0.00 0.00 3.62
3594 6924 9.364989 CCAAAACAAGAATTTAGTTCAAACTGA 57.635 29.630 5.66 0.00 40.07 3.41
3595 6925 8.116136 GCCAAAACAAGAATTTAGTTCAAACTG 58.884 33.333 5.66 0.00 40.07 3.16
3596 6926 7.010091 CGCCAAAACAAGAATTTAGTTCAAACT 59.990 33.333 0.46 0.46 42.91 2.66
3597 6927 7.116819 CGCCAAAACAAGAATTTAGTTCAAAC 58.883 34.615 0.00 0.00 39.39 2.93
3598 6928 6.256757 CCGCCAAAACAAGAATTTAGTTCAAA 59.743 34.615 0.00 0.00 39.39 2.69
3599 6929 5.751028 CCGCCAAAACAAGAATTTAGTTCAA 59.249 36.000 0.00 0.00 39.39 2.69
3600 6930 5.285651 CCGCCAAAACAAGAATTTAGTTCA 58.714 37.500 0.00 0.00 39.39 3.18
3601 6931 4.684242 CCCGCCAAAACAAGAATTTAGTTC 59.316 41.667 0.00 0.00 37.08 3.01
3602 6932 4.627058 CCCGCCAAAACAAGAATTTAGTT 58.373 39.130 0.00 0.00 0.00 2.24
3603 6933 3.554129 GCCCGCCAAAACAAGAATTTAGT 60.554 43.478 0.00 0.00 0.00 2.24
3604 6934 2.993220 GCCCGCCAAAACAAGAATTTAG 59.007 45.455 0.00 0.00 0.00 1.85
3605 6935 2.630580 AGCCCGCCAAAACAAGAATTTA 59.369 40.909 0.00 0.00 0.00 1.40
3606 6936 1.416030 AGCCCGCCAAAACAAGAATTT 59.584 42.857 0.00 0.00 0.00 1.82
3607 6937 1.047801 AGCCCGCCAAAACAAGAATT 58.952 45.000 0.00 0.00 0.00 2.17
3608 6938 1.047801 AAGCCCGCCAAAACAAGAAT 58.952 45.000 0.00 0.00 0.00 2.40
3609 6939 1.693627 TAAGCCCGCCAAAACAAGAA 58.306 45.000 0.00 0.00 0.00 2.52
3610 6940 1.543802 CATAAGCCCGCCAAAACAAGA 59.456 47.619 0.00 0.00 0.00 3.02
3611 6941 1.994916 CATAAGCCCGCCAAAACAAG 58.005 50.000 0.00 0.00 0.00 3.16
3612 6942 0.037790 GCATAAGCCCGCCAAAACAA 60.038 50.000 0.00 0.00 33.58 2.83
3613 6943 1.589113 GCATAAGCCCGCCAAAACA 59.411 52.632 0.00 0.00 33.58 2.83
3614 6944 1.516169 CGCATAAGCCCGCCAAAAC 60.516 57.895 0.00 0.00 37.52 2.43
3615 6945 2.705821 CCGCATAAGCCCGCCAAAA 61.706 57.895 0.00 0.00 37.52 2.44
3616 6946 3.137459 CCGCATAAGCCCGCCAAA 61.137 61.111 0.00 0.00 37.52 3.28
3619 6949 4.643387 ATCCCGCATAAGCCCGCC 62.643 66.667 0.00 0.00 37.52 6.13
3620 6950 3.357079 CATCCCGCATAAGCCCGC 61.357 66.667 0.00 0.00 37.52 6.13
3621 6951 3.357079 GCATCCCGCATAAGCCCG 61.357 66.667 0.00 0.00 41.79 6.13
3622 6952 2.985847 GGCATCCCGCATAAGCCC 60.986 66.667 0.00 0.00 45.17 5.19
3623 6953 2.985847 GGGCATCCCGCATAAGCC 60.986 66.667 0.00 0.00 45.17 4.35
3637 6967 2.902343 GTAGGGATGCAAGCGGGC 60.902 66.667 0.00 0.00 0.00 6.13
3638 6968 1.524621 CAGTAGGGATGCAAGCGGG 60.525 63.158 0.00 0.00 0.00 6.13
3639 6969 0.392998 AACAGTAGGGATGCAAGCGG 60.393 55.000 0.00 0.00 0.00 5.52
3640 6970 1.933853 GTAACAGTAGGGATGCAAGCG 59.066 52.381 0.00 0.00 0.00 4.68
3641 6971 2.092914 AGGTAACAGTAGGGATGCAAGC 60.093 50.000 0.00 0.00 41.41 4.01
3642 6972 3.914426 AGGTAACAGTAGGGATGCAAG 57.086 47.619 0.00 0.00 41.41 4.01
3643 6973 3.453353 GGTAGGTAACAGTAGGGATGCAA 59.547 47.826 0.00 0.00 41.41 4.08
3644 6974 3.036091 GGTAGGTAACAGTAGGGATGCA 58.964 50.000 0.00 0.00 41.41 3.96
3645 6975 3.069729 CAGGTAGGTAACAGTAGGGATGC 59.930 52.174 0.00 0.00 41.41 3.91
3646 6976 4.099573 CACAGGTAGGTAACAGTAGGGATG 59.900 50.000 0.00 0.00 41.41 3.51
3647 6977 4.264713 ACACAGGTAGGTAACAGTAGGGAT 60.265 45.833 0.00 0.00 41.41 3.85
3648 6978 3.076484 ACACAGGTAGGTAACAGTAGGGA 59.924 47.826 0.00 0.00 41.41 4.20
3649 6979 3.438183 ACACAGGTAGGTAACAGTAGGG 58.562 50.000 0.00 0.00 41.41 3.53
3650 6980 6.830324 TGTATACACAGGTAGGTAACAGTAGG 59.170 42.308 0.08 0.00 41.41 3.18
3651 6981 7.870509 TGTATACACAGGTAGGTAACAGTAG 57.129 40.000 0.08 0.00 41.41 2.57
3681 7011 9.973246 CATACACAACATTTACAGAAGTATGTC 57.027 33.333 0.00 0.00 34.47 3.06
3711 7041 2.602878 CGCAAGCAGAAAGAAATGCAT 58.397 42.857 0.00 0.00 45.01 3.96
3756 7086 6.101332 GGCAACAGCATCAAATCAAATTCTA 58.899 36.000 0.00 0.00 0.00 2.10
3897 7229 4.052229 GCAGGCTGGCAGCAACTG 62.052 66.667 37.49 33.19 44.75 3.16
4058 7400 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
4059 7401 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
4060 7402 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
4061 7403 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
4062 7404 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
4070 7412 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
4071 7413 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
4072 7414 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
4073 7415 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
4074 7416 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
4075 7417 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
4076 7418 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
4077 7419 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
4078 7420 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
4079 7421 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
4080 7422 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
4081 7423 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
4082 7424 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
4083 7425 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
4084 7426 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
4085 7427 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
4086 7428 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
4087 7429 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
4088 7430 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
4089 7431 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
4090 7432 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
4091 7433 1.692411 AAAAAGGACAGACCCAGTGC 58.308 50.000 0.00 0.00 40.05 4.40
4111 7453 9.809096 GGATATCTCGAGAATATTGCATCTAAA 57.191 33.333 20.91 0.00 0.00 1.85
4112 7454 8.971073 TGGATATCTCGAGAATATTGCATCTAA 58.029 33.333 20.91 4.56 0.00 2.10
4113 7455 8.525290 TGGATATCTCGAGAATATTGCATCTA 57.475 34.615 20.91 3.28 0.00 1.98
4114 7456 7.415592 TGGATATCTCGAGAATATTGCATCT 57.584 36.000 20.91 0.76 0.00 2.90
4115 7457 7.763528 ACTTGGATATCTCGAGAATATTGCATC 59.236 37.037 20.91 12.23 0.00 3.91
4116 7458 7.619050 ACTTGGATATCTCGAGAATATTGCAT 58.381 34.615 20.91 2.37 0.00 3.96
4117 7459 6.997655 ACTTGGATATCTCGAGAATATTGCA 58.002 36.000 20.91 12.53 0.00 4.08
4118 7460 7.093354 TGACTTGGATATCTCGAGAATATTGC 58.907 38.462 20.91 10.11 0.00 3.56
4122 7464 8.409371 GCATATGACTTGGATATCTCGAGAATA 58.591 37.037 20.91 12.46 0.00 1.75
4123 7465 7.093596 TGCATATGACTTGGATATCTCGAGAAT 60.094 37.037 20.91 13.85 0.00 2.40
4124 7466 6.209391 TGCATATGACTTGGATATCTCGAGAA 59.791 38.462 20.91 9.41 0.00 2.87
4125 7467 5.711976 TGCATATGACTTGGATATCTCGAGA 59.288 40.000 19.19 19.19 0.00 4.04
4126 7468 5.958955 TGCATATGACTTGGATATCTCGAG 58.041 41.667 5.93 5.93 0.00 4.04
4127 7469 5.478332 ACTGCATATGACTTGGATATCTCGA 59.522 40.000 6.97 0.00 0.00 4.04
4128 7470 5.718146 ACTGCATATGACTTGGATATCTCG 58.282 41.667 6.97 0.00 0.00 4.04
4327 7701 6.016777 TCGAAAATAGTAGGATCGGTAGGAAC 60.017 42.308 0.00 0.00 34.47 3.62
4332 7706 5.277974 CCGTTCGAAAATAGTAGGATCGGTA 60.278 44.000 0.00 0.00 36.03 4.02
4334 7708 3.979495 CCGTTCGAAAATAGTAGGATCGG 59.021 47.826 0.00 0.00 34.78 4.18
4338 7712 4.272489 TCCTCCGTTCGAAAATAGTAGGA 58.728 43.478 0.00 4.24 0.00 2.94
4339 7713 4.644103 TCCTCCGTTCGAAAATAGTAGG 57.356 45.455 0.00 1.78 0.00 3.18
4340 7714 5.648572 ACTTCCTCCGTTCGAAAATAGTAG 58.351 41.667 0.00 0.53 0.00 2.57
4411 7822 2.028567 TGGCATGAATGACGCGGATATA 60.029 45.455 12.47 0.00 39.17 0.86
4430 7841 0.753848 ACCAAAAACACCCGACCTGG 60.754 55.000 0.00 0.00 37.55 4.45
4431 7842 1.605232 GTACCAAAAACACCCGACCTG 59.395 52.381 0.00 0.00 0.00 4.00
4567 7983 1.380785 AAGCATGCATCCTGGTGGG 60.381 57.895 21.98 0.00 0.00 4.61
4568 7984 0.681887 TCAAGCATGCATCCTGGTGG 60.682 55.000 21.98 0.00 0.00 4.61
4569 7985 1.179152 TTCAAGCATGCATCCTGGTG 58.821 50.000 21.98 5.97 0.00 4.17
4571 7987 3.536956 AAATTCAAGCATGCATCCTGG 57.463 42.857 21.98 0.00 0.00 4.45
4572 7988 3.869246 GGAAAATTCAAGCATGCATCCTG 59.131 43.478 21.98 11.30 0.00 3.86
4620 8121 2.108970 GATCGGAGGGAGTACCAAAGT 58.891 52.381 0.00 0.00 43.89 2.66
4621 8122 1.413077 GGATCGGAGGGAGTACCAAAG 59.587 57.143 0.00 0.00 43.89 2.77
4622 8123 1.273381 TGGATCGGAGGGAGTACCAAA 60.273 52.381 0.00 0.00 43.89 3.28
4858 8375 5.652994 ACTAGTCAGTCAATGAAGACCTC 57.347 43.478 11.80 0.00 40.43 3.85
4860 8377 5.784177 TGAACTAGTCAGTCAATGAAGACC 58.216 41.667 11.80 0.56 40.43 3.85
4935 8452 1.086696 CAACACCAATGGGCTACTCG 58.913 55.000 3.55 0.00 37.90 4.18
5052 8571 4.348863 ACAGCACTTCATCTCAGACTTT 57.651 40.909 0.00 0.00 0.00 2.66
5091 8610 1.106944 AAGGGCCCGTGTTGAAACTG 61.107 55.000 18.44 0.00 0.00 3.16
5105 8624 0.811281 GATGCTGGTACAACAAGGGC 59.189 55.000 0.00 0.00 38.20 5.19
5158 8677 9.856162 ACACCCCTATATTTAATTACAACGATT 57.144 29.630 0.00 0.00 0.00 3.34
5177 8696 7.093245 ACACAAAAGTGTAAAATAAACACCCCT 60.093 33.333 0.00 0.00 46.77 4.79
5439 8958 1.870167 GCTAAGCAGCCGGTGAGATAC 60.870 57.143 1.90 0.00 42.37 2.24
5466 8985 4.309099 GCTCATCATTTTGTTTCCAGCAA 58.691 39.130 0.00 0.00 0.00 3.91
5467 8986 3.306225 GGCTCATCATTTTGTTTCCAGCA 60.306 43.478 0.00 0.00 0.00 4.41
5470 8989 3.153130 TCGGCTCATCATTTTGTTTCCA 58.847 40.909 0.00 0.00 0.00 3.53
5481 9000 1.893062 CACAGGTCTCGGCTCATCA 59.107 57.895 0.00 0.00 0.00 3.07
5488 9007 0.109086 CACTAGTGCACAGGTCTCGG 60.109 60.000 21.04 1.65 0.00 4.63
5515 9034 8.063200 TCCATCCGTTCCATAATATAGTAGTG 57.937 38.462 0.00 0.00 0.00 2.74
5516 9035 7.894364 ACTCCATCCGTTCCATAATATAGTAGT 59.106 37.037 0.00 0.00 0.00 2.73
5517 9036 8.294954 ACTCCATCCGTTCCATAATATAGTAG 57.705 38.462 0.00 0.00 0.00 2.57
5520 9039 9.137459 AGATACTCCATCCGTTCCATAATATAG 57.863 37.037 0.00 0.00 33.75 1.31
5530 9049 4.561105 GGATGAAGATACTCCATCCGTTC 58.439 47.826 1.63 0.00 44.51 3.95
5539 9058 8.347004 TGACTATCTGATGGATGAAGATACTC 57.653 38.462 8.09 0.00 35.98 2.59
5543 9062 7.039152 ACGATTGACTATCTGATGGATGAAGAT 60.039 37.037 8.09 0.00 35.98 2.40
5545 9064 6.453943 ACGATTGACTATCTGATGGATGAAG 58.546 40.000 8.09 0.00 35.98 3.02
5547 9066 6.040842 TGAACGATTGACTATCTGATGGATGA 59.959 38.462 8.09 0.00 35.98 2.92
5548 9067 6.218746 TGAACGATTGACTATCTGATGGATG 58.781 40.000 8.09 0.00 35.98 3.51
5549 9068 6.410942 TGAACGATTGACTATCTGATGGAT 57.589 37.500 8.09 0.00 38.38 3.41
5551 9070 5.107182 GCATGAACGATTGACTATCTGATGG 60.107 44.000 0.00 0.00 0.00 3.51
5552 9071 5.464389 TGCATGAACGATTGACTATCTGATG 59.536 40.000 0.00 0.00 0.00 3.07
5554 9073 5.009854 TGCATGAACGATTGACTATCTGA 57.990 39.130 0.00 0.00 0.00 3.27
5555 9074 5.388164 CGATGCATGAACGATTGACTATCTG 60.388 44.000 2.46 0.00 0.00 2.90
5557 9076 4.445718 ACGATGCATGAACGATTGACTATC 59.554 41.667 2.46 0.00 0.00 2.08
5558 9077 4.209911 CACGATGCATGAACGATTGACTAT 59.790 41.667 2.46 0.00 0.00 2.12
5559 9078 3.551485 CACGATGCATGAACGATTGACTA 59.449 43.478 2.46 0.00 0.00 2.59
5560 9079 2.349580 CACGATGCATGAACGATTGACT 59.650 45.455 2.46 0.00 0.00 3.41
5562 9081 1.062440 GCACGATGCATGAACGATTGA 59.938 47.619 2.46 0.00 44.26 2.57
5575 9094 3.576356 GACCCGCCATGCACGATG 61.576 66.667 7.82 2.17 0.00 3.84
5582 9101 3.814268 CAAAGCCGACCCGCCATG 61.814 66.667 0.00 0.00 0.00 3.66
5583 9102 3.561120 TTCAAAGCCGACCCGCCAT 62.561 57.895 0.00 0.00 0.00 4.40
5584 9103 4.257654 TTCAAAGCCGACCCGCCA 62.258 61.111 0.00 0.00 0.00 5.69
5585 9104 3.431725 CTTCAAAGCCGACCCGCC 61.432 66.667 0.00 0.00 0.00 6.13
5586 9105 4.103103 GCTTCAAAGCCGACCCGC 62.103 66.667 3.27 0.00 46.20 6.13
5595 9114 4.932200 AGATACTCCGAAACTGCTTCAAAG 59.068 41.667 0.00 0.00 33.17 2.77
5596 9115 4.894784 AGATACTCCGAAACTGCTTCAAA 58.105 39.130 0.00 0.00 33.17 2.69
5597 9116 4.537135 AGATACTCCGAAACTGCTTCAA 57.463 40.909 0.00 0.00 33.17 2.69
5598 9117 4.537135 AAGATACTCCGAAACTGCTTCA 57.463 40.909 0.00 0.00 33.17 3.02
5599 9118 4.436183 GCAAAGATACTCCGAAACTGCTTC 60.436 45.833 0.00 0.00 0.00 3.86
5600 9119 3.437049 GCAAAGATACTCCGAAACTGCTT 59.563 43.478 0.00 0.00 0.00 3.91
5601 9120 3.003480 GCAAAGATACTCCGAAACTGCT 58.997 45.455 0.00 0.00 0.00 4.24
5602 9121 2.096013 GGCAAAGATACTCCGAAACTGC 59.904 50.000 0.00 0.00 0.00 4.40
5603 9122 2.348666 CGGCAAAGATACTCCGAAACTG 59.651 50.000 0.00 0.00 44.23 3.16
5604 9123 2.028385 ACGGCAAAGATACTCCGAAACT 60.028 45.455 6.52 0.00 44.23 2.66
5605 9124 2.093783 CACGGCAAAGATACTCCGAAAC 59.906 50.000 6.52 0.00 44.23 2.78
5606 9125 2.028839 TCACGGCAAAGATACTCCGAAA 60.029 45.455 6.52 0.00 44.23 3.46
5607 9126 1.546923 TCACGGCAAAGATACTCCGAA 59.453 47.619 6.52 0.00 44.23 4.30
5608 9127 1.179152 TCACGGCAAAGATACTCCGA 58.821 50.000 6.52 0.00 44.23 4.55
5609 9128 2.225068 ATCACGGCAAAGATACTCCG 57.775 50.000 0.00 0.00 46.61 4.63
5610 9129 4.051922 CTGTATCACGGCAAAGATACTCC 58.948 47.826 17.13 0.00 44.28 3.85
5611 9130 4.683832 ACTGTATCACGGCAAAGATACTC 58.316 43.478 17.13 0.39 44.28 2.59
5612 9131 4.737855 ACTGTATCACGGCAAAGATACT 57.262 40.909 17.13 2.31 44.28 2.12
5613 9132 5.581085 AGAAACTGTATCACGGCAAAGATAC 59.419 40.000 12.19 12.19 44.24 2.24
5614 9133 5.580691 CAGAAACTGTATCACGGCAAAGATA 59.419 40.000 0.00 0.00 0.00 1.98
5615 9134 4.393062 CAGAAACTGTATCACGGCAAAGAT 59.607 41.667 0.00 0.00 0.00 2.40
5616 9135 3.745975 CAGAAACTGTATCACGGCAAAGA 59.254 43.478 0.00 0.00 0.00 2.52
5617 9136 3.667960 GCAGAAACTGTATCACGGCAAAG 60.668 47.826 0.00 0.00 33.43 2.77
5618 9137 2.225491 GCAGAAACTGTATCACGGCAAA 59.775 45.455 0.00 0.00 33.43 3.68
5619 9138 1.804151 GCAGAAACTGTATCACGGCAA 59.196 47.619 0.00 0.00 33.43 4.52
5620 9139 1.270571 TGCAGAAACTGTATCACGGCA 60.271 47.619 0.00 0.00 33.43 5.69
5621 9140 1.128692 GTGCAGAAACTGTATCACGGC 59.871 52.381 0.00 0.00 33.43 5.68
5622 9141 2.688507 AGTGCAGAAACTGTATCACGG 58.311 47.619 0.00 0.00 33.43 4.94
5623 9142 4.559251 GTCTAGTGCAGAAACTGTATCACG 59.441 45.833 0.00 0.00 34.17 4.35
5638 9157 4.394300 AGCTTCATGATGTTTGTCTAGTGC 59.606 41.667 10.05 0.00 0.00 4.40
5646 9165 6.541278 TGGATCTCTAAGCTTCATGATGTTTG 59.459 38.462 17.41 9.70 0.00 2.93
5656 9175 2.224257 CCCTGCTGGATCTCTAAGCTTC 60.224 54.545 11.88 0.00 37.82 3.86
5665 9184 4.063335 CAGGACCCTGCTGGATCT 57.937 61.111 11.88 2.57 37.24 2.75
5711 9513 3.630013 AACTCAGGCCGCAGAGCA 61.630 61.111 18.86 0.00 35.28 4.26
5719 9521 2.671682 GGGAGTCCAACTCAGGCC 59.328 66.667 12.30 0.00 46.79 5.19
5732 9534 4.988598 ACAAGTGTGGCGCGGGAG 62.989 66.667 8.83 0.00 0.00 4.30
5733 9535 4.980805 GACAAGTGTGGCGCGGGA 62.981 66.667 8.83 0.00 0.00 5.14
5735 9537 3.583276 TAGGACAAGTGTGGCGCGG 62.583 63.158 8.83 0.00 31.03 6.46
5741 9543 4.058817 GGTCTGAAAGTAGGACAAGTGTG 58.941 47.826 0.00 0.00 33.76 3.82
5754 9556 0.240411 GCAGCTGCTTGGTCTGAAAG 59.760 55.000 31.33 0.00 38.21 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.