Multiple sequence alignment - TraesCS7A01G396800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G396800 chr7A 100.000 2255 0 0 1 2255 575286672 575288926 0.000000e+00 4165.0
1 TraesCS7A01G396800 chr7A 98.487 1454 21 1 802 2255 60149302 60147850 0.000000e+00 2562.0
2 TraesCS7A01G396800 chr7A 86.594 276 20 4 5 276 596709466 596709204 2.830000e-74 289.0
3 TraesCS7A01G396800 chr7A 89.937 159 8 5 395 548 697853927 697854082 4.910000e-47 198.0
4 TraesCS7A01G396800 chr1D 98.762 1454 16 2 802 2255 141314150 141312699 0.000000e+00 2584.0
5 TraesCS7A01G396800 chr2B 98.693 1454 17 2 802 2255 799246957 799248408 0.000000e+00 2579.0
6 TraesCS7A01G396800 chr7B 98.625 1455 18 2 802 2255 644466428 644467881 0.000000e+00 2575.0
7 TraesCS7A01G396800 chr7B 95.745 47 1 1 749 795 646219621 646219576 8.640000e-10 75.0
8 TraesCS7A01G396800 chrUn 98.556 1454 20 1 802 2255 225927238 225928690 0.000000e+00 2567.0
9 TraesCS7A01G396800 chrUn 88.608 79 8 1 548 626 32162674 32162597 6.630000e-16 95.3
10 TraesCS7A01G396800 chr3A 98.487 1454 21 1 802 2255 633110239 633111691 0.000000e+00 2562.0
11 TraesCS7A01G396800 chr4D 98.212 1454 25 1 802 2255 123715414 123716866 0.000000e+00 2540.0
12 TraesCS7A01G396800 chr4D 90.141 71 2 4 686 752 508008984 508008915 1.110000e-13 87.9
13 TraesCS7A01G396800 chr4D 97.959 49 1 0 753 801 91058460 91058412 3.990000e-13 86.1
14 TraesCS7A01G396800 chr4D 92.857 56 4 0 753 808 253804591 253804536 5.160000e-12 82.4
15 TraesCS7A01G396800 chr1B 98.212 1454 25 1 802 2255 672478146 672479598 0.000000e+00 2540.0
16 TraesCS7A01G396800 chr1B 98.144 1455 24 3 802 2255 638701681 638700229 0.000000e+00 2534.0
17 TraesCS7A01G396800 chr4A 87.097 279 19 4 2 276 562603091 562603356 1.310000e-77 300.0
18 TraesCS7A01G396800 chr2D 86.691 278 18 5 3 276 97618527 97618789 7.880000e-75 291.0
19 TraesCS7A01G396800 chr5D 91.429 70 2 4 686 752 9237949 9237881 2.380000e-15 93.5
20 TraesCS7A01G396800 chr5D 97.959 49 1 0 753 801 266690942 266690894 3.990000e-13 86.1
21 TraesCS7A01G396800 chr7D 98.039 51 1 0 753 803 70915049 70915099 3.080000e-14 89.8
22 TraesCS7A01G396800 chr5A 97.959 49 1 0 753 801 80376912 80376864 3.990000e-13 86.1
23 TraesCS7A01G396800 chr3B 97.959 49 1 0 753 801 600846385 600846433 3.990000e-13 86.1
24 TraesCS7A01G396800 chr3D 97.917 48 1 0 753 800 572094192 572094145 1.440000e-12 84.2
25 TraesCS7A01G396800 chr3D 95.918 49 2 0 753 801 557701896 557701944 1.860000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G396800 chr7A 575286672 575288926 2254 False 4165 4165 100.000 1 2255 1 chr7A.!!$F1 2254
1 TraesCS7A01G396800 chr7A 60147850 60149302 1452 True 2562 2562 98.487 802 2255 1 chr7A.!!$R1 1453
2 TraesCS7A01G396800 chr1D 141312699 141314150 1451 True 2584 2584 98.762 802 2255 1 chr1D.!!$R1 1453
3 TraesCS7A01G396800 chr2B 799246957 799248408 1451 False 2579 2579 98.693 802 2255 1 chr2B.!!$F1 1453
4 TraesCS7A01G396800 chr7B 644466428 644467881 1453 False 2575 2575 98.625 802 2255 1 chr7B.!!$F1 1453
5 TraesCS7A01G396800 chrUn 225927238 225928690 1452 False 2567 2567 98.556 802 2255 1 chrUn.!!$F1 1453
6 TraesCS7A01G396800 chr3A 633110239 633111691 1452 False 2562 2562 98.487 802 2255 1 chr3A.!!$F1 1453
7 TraesCS7A01G396800 chr4D 123715414 123716866 1452 False 2540 2540 98.212 802 2255 1 chr4D.!!$F1 1453
8 TraesCS7A01G396800 chr1B 672478146 672479598 1452 False 2540 2540 98.212 802 2255 1 chr1B.!!$F1 1453
9 TraesCS7A01G396800 chr1B 638700229 638701681 1452 True 2534 2534 98.144 802 2255 1 chr1B.!!$R1 1453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 776 0.100861 GTTCCCTCGAGTGATCGGTC 59.899 60.0 12.31 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 1961 1.285373 AGTAGTCCCATCACTCTCGGT 59.715 52.381 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 5.847304 TGATGTGATACTATCCAAGTCTGC 58.153 41.667 0.00 0.00 39.80 4.26
76 77 5.600069 TGATGTGATACTATCCAAGTCTGCT 59.400 40.000 0.00 0.00 39.80 4.24
77 78 6.777580 TGATGTGATACTATCCAAGTCTGCTA 59.222 38.462 0.00 0.00 39.80 3.49
78 79 7.452813 TGATGTGATACTATCCAAGTCTGCTAT 59.547 37.037 0.00 0.00 39.80 2.97
79 80 8.885693 ATGTGATACTATCCAAGTCTGCTATA 57.114 34.615 0.00 0.00 39.80 1.31
80 81 8.706322 TGTGATACTATCCAAGTCTGCTATAA 57.294 34.615 0.00 0.00 39.80 0.98
81 82 9.314133 TGTGATACTATCCAAGTCTGCTATAAT 57.686 33.333 0.00 0.00 39.80 1.28
87 88 8.924303 ACTATCCAAGTCTGCTATAATACAACA 58.076 33.333 0.00 0.00 30.33 3.33
88 89 9.935241 CTATCCAAGTCTGCTATAATACAACAT 57.065 33.333 0.00 0.00 0.00 2.71
89 90 8.613060 ATCCAAGTCTGCTATAATACAACATG 57.387 34.615 0.00 0.00 0.00 3.21
90 91 6.483307 TCCAAGTCTGCTATAATACAACATGC 59.517 38.462 0.00 0.00 0.00 4.06
91 92 6.293626 CCAAGTCTGCTATAATACAACATGCC 60.294 42.308 0.00 0.00 0.00 4.40
92 93 5.928976 AGTCTGCTATAATACAACATGCCA 58.071 37.500 0.00 0.00 0.00 4.92
93 94 6.356556 AGTCTGCTATAATACAACATGCCAA 58.643 36.000 0.00 0.00 0.00 4.52
94 95 6.260936 AGTCTGCTATAATACAACATGCCAAC 59.739 38.462 0.00 0.00 0.00 3.77
95 96 5.530915 TCTGCTATAATACAACATGCCAACC 59.469 40.000 0.00 0.00 0.00 3.77
96 97 5.445069 TGCTATAATACAACATGCCAACCT 58.555 37.500 0.00 0.00 0.00 3.50
97 98 6.596621 TGCTATAATACAACATGCCAACCTA 58.403 36.000 0.00 0.00 0.00 3.08
98 99 6.485313 TGCTATAATACAACATGCCAACCTAC 59.515 38.462 0.00 0.00 0.00 3.18
99 100 6.485313 GCTATAATACAACATGCCAACCTACA 59.515 38.462 0.00 0.00 0.00 2.74
100 101 6.693315 ATAATACAACATGCCAACCTACAC 57.307 37.500 0.00 0.00 0.00 2.90
101 102 2.356665 ACAACATGCCAACCTACACA 57.643 45.000 0.00 0.00 0.00 3.72
102 103 2.875296 ACAACATGCCAACCTACACAT 58.125 42.857 0.00 0.00 0.00 3.21
103 104 2.819608 ACAACATGCCAACCTACACATC 59.180 45.455 0.00 0.00 0.00 3.06
104 105 2.819019 CAACATGCCAACCTACACATCA 59.181 45.455 0.00 0.00 0.00 3.07
105 106 2.715046 ACATGCCAACCTACACATCAG 58.285 47.619 0.00 0.00 0.00 2.90
106 107 2.019249 CATGCCAACCTACACATCAGG 58.981 52.381 0.00 0.00 39.25 3.86
107 108 1.357137 TGCCAACCTACACATCAGGA 58.643 50.000 0.00 0.00 36.61 3.86
108 109 1.702401 TGCCAACCTACACATCAGGAA 59.298 47.619 0.00 0.00 36.61 3.36
109 110 2.308570 TGCCAACCTACACATCAGGAAT 59.691 45.455 0.00 0.00 36.61 3.01
110 111 2.684881 GCCAACCTACACATCAGGAATG 59.315 50.000 0.00 0.00 41.48 2.67
111 112 3.622206 GCCAACCTACACATCAGGAATGA 60.622 47.826 0.00 0.00 38.83 2.57
112 113 4.588899 CCAACCTACACATCAGGAATGAA 58.411 43.478 0.00 0.00 38.83 2.57
113 114 5.009631 CCAACCTACACATCAGGAATGAAA 58.990 41.667 0.00 0.00 38.83 2.69
114 115 5.476599 CCAACCTACACATCAGGAATGAAAA 59.523 40.000 0.00 0.00 38.83 2.29
115 116 6.015519 CCAACCTACACATCAGGAATGAAAAA 60.016 38.462 0.00 0.00 38.83 1.94
140 141 9.646522 AAAGTAGGAATAATTATGTCCAATGCT 57.353 29.630 19.88 9.36 33.57 3.79
144 145 8.995027 AGGAATAATTATGTCCAATGCTAACA 57.005 30.769 19.88 0.00 33.57 2.41
145 146 8.850156 AGGAATAATTATGTCCAATGCTAACAC 58.150 33.333 19.88 0.00 33.57 3.32
146 147 8.629158 GGAATAATTATGTCCAATGCTAACACA 58.371 33.333 15.90 0.00 0.00 3.72
148 149 9.970395 AATAATTATGTCCAATGCTAACACATG 57.030 29.630 0.00 0.00 0.00 3.21
149 150 7.408756 AATTATGTCCAATGCTAACACATGT 57.591 32.000 0.00 0.00 0.00 3.21
150 151 4.707030 ATGTCCAATGCTAACACATGTG 57.293 40.909 24.25 24.25 0.00 3.21
151 152 3.749226 TGTCCAATGCTAACACATGTGA 58.251 40.909 31.94 9.84 0.00 3.58
152 153 3.501828 TGTCCAATGCTAACACATGTGAC 59.498 43.478 31.94 17.27 0.00 3.67
153 154 3.501828 GTCCAATGCTAACACATGTGACA 59.498 43.478 31.94 21.76 0.00 3.58
154 155 4.156556 GTCCAATGCTAACACATGTGACAT 59.843 41.667 31.94 22.83 0.00 3.06
155 156 4.156373 TCCAATGCTAACACATGTGACATG 59.844 41.667 31.94 22.97 0.00 3.21
156 157 3.770263 ATGCTAACACATGTGACATGC 57.230 42.857 31.94 25.36 0.00 4.06
157 158 2.781923 TGCTAACACATGTGACATGCT 58.218 42.857 31.94 12.19 0.00 3.79
158 159 3.148412 TGCTAACACATGTGACATGCTT 58.852 40.909 31.94 17.43 0.00 3.91
159 160 3.189080 TGCTAACACATGTGACATGCTTC 59.811 43.478 31.94 11.97 0.00 3.86
160 161 3.426695 GCTAACACATGTGACATGCTTCC 60.427 47.826 31.94 8.02 0.00 3.46
161 162 2.275134 ACACATGTGACATGCTTCCA 57.725 45.000 31.94 0.00 0.00 3.53
162 163 2.156917 ACACATGTGACATGCTTCCAG 58.843 47.619 31.94 10.46 0.00 3.86
163 164 1.135489 CACATGTGACATGCTTCCAGC 60.135 52.381 24.32 0.00 42.82 4.85
164 165 0.454600 CATGTGACATGCTTCCAGCC 59.545 55.000 13.15 0.00 41.51 4.85
165 166 1.028330 ATGTGACATGCTTCCAGCCG 61.028 55.000 0.00 0.00 41.51 5.52
166 167 2.747460 TGACATGCTTCCAGCCGC 60.747 61.111 0.00 0.00 41.51 6.53
167 168 2.747460 GACATGCTTCCAGCCGCA 60.747 61.111 0.00 0.00 41.51 5.69
168 169 2.749044 ACATGCTTCCAGCCGCAG 60.749 61.111 0.00 0.00 41.51 5.18
169 170 4.189188 CATGCTTCCAGCCGCAGC 62.189 66.667 0.00 0.00 41.51 5.25
173 174 2.985282 CTTCCAGCCGCAGCCAAA 60.985 61.111 0.00 0.00 41.25 3.28
174 175 3.273080 CTTCCAGCCGCAGCCAAAC 62.273 63.158 0.00 0.00 41.25 2.93
175 176 4.577677 TCCAGCCGCAGCCAAACA 62.578 61.111 0.00 0.00 41.25 2.83
176 177 4.347453 CCAGCCGCAGCCAAACAC 62.347 66.667 0.00 0.00 41.25 3.32
177 178 4.347453 CAGCCGCAGCCAAACACC 62.347 66.667 0.00 0.00 41.25 4.16
178 179 4.892965 AGCCGCAGCCAAACACCA 62.893 61.111 0.00 0.00 41.25 4.17
179 180 3.910490 GCCGCAGCCAAACACCAA 61.910 61.111 0.00 0.00 0.00 3.67
180 181 2.811101 CCGCAGCCAAACACCAAA 59.189 55.556 0.00 0.00 0.00 3.28
181 182 1.591327 CCGCAGCCAAACACCAAAC 60.591 57.895 0.00 0.00 0.00 2.93
182 183 1.140589 CGCAGCCAAACACCAAACA 59.859 52.632 0.00 0.00 0.00 2.83
183 184 1.145162 CGCAGCCAAACACCAAACAC 61.145 55.000 0.00 0.00 0.00 3.32
184 185 0.108424 GCAGCCAAACACCAAACACA 60.108 50.000 0.00 0.00 0.00 3.72
185 186 1.674221 GCAGCCAAACACCAAACACAA 60.674 47.619 0.00 0.00 0.00 3.33
186 187 2.693069 CAGCCAAACACCAAACACAAA 58.307 42.857 0.00 0.00 0.00 2.83
187 188 2.414825 CAGCCAAACACCAAACACAAAC 59.585 45.455 0.00 0.00 0.00 2.93
188 189 2.037772 AGCCAAACACCAAACACAAACA 59.962 40.909 0.00 0.00 0.00 2.83
189 190 2.808543 GCCAAACACCAAACACAAACAA 59.191 40.909 0.00 0.00 0.00 2.83
190 191 3.120373 GCCAAACACCAAACACAAACAAG 60.120 43.478 0.00 0.00 0.00 3.16
191 192 4.310769 CCAAACACCAAACACAAACAAGA 58.689 39.130 0.00 0.00 0.00 3.02
192 193 4.934602 CCAAACACCAAACACAAACAAGAT 59.065 37.500 0.00 0.00 0.00 2.40
193 194 5.163874 CCAAACACCAAACACAAACAAGATG 60.164 40.000 0.00 0.00 0.00 2.90
194 195 5.398603 AACACCAAACACAAACAAGATGA 57.601 34.783 0.00 0.00 0.00 2.92
195 196 5.596836 ACACCAAACACAAACAAGATGAT 57.403 34.783 0.00 0.00 0.00 2.45
196 197 5.976458 ACACCAAACACAAACAAGATGATT 58.024 33.333 0.00 0.00 0.00 2.57
197 198 6.042143 ACACCAAACACAAACAAGATGATTC 58.958 36.000 0.00 0.00 0.00 2.52
198 199 5.463061 CACCAAACACAAACAAGATGATTCC 59.537 40.000 0.00 0.00 0.00 3.01
199 200 5.363580 ACCAAACACAAACAAGATGATTCCT 59.636 36.000 0.00 0.00 0.00 3.36
200 201 6.549364 ACCAAACACAAACAAGATGATTCCTA 59.451 34.615 0.00 0.00 0.00 2.94
201 202 7.233348 ACCAAACACAAACAAGATGATTCCTAT 59.767 33.333 0.00 0.00 0.00 2.57
202 203 8.739039 CCAAACACAAACAAGATGATTCCTATA 58.261 33.333 0.00 0.00 0.00 1.31
203 204 9.559958 CAAACACAAACAAGATGATTCCTATAC 57.440 33.333 0.00 0.00 0.00 1.47
204 205 7.865706 ACACAAACAAGATGATTCCTATACC 57.134 36.000 0.00 0.00 0.00 2.73
205 206 7.633789 ACACAAACAAGATGATTCCTATACCT 58.366 34.615 0.00 0.00 0.00 3.08
206 207 8.109634 ACACAAACAAGATGATTCCTATACCTT 58.890 33.333 0.00 0.00 0.00 3.50
207 208 8.400947 CACAAACAAGATGATTCCTATACCTTG 58.599 37.037 0.00 0.00 36.54 3.61
208 209 8.109634 ACAAACAAGATGATTCCTATACCTTGT 58.890 33.333 0.00 0.00 42.84 3.16
211 212 9.533831 AACAAGATGATTCCTATACCTTGTTTT 57.466 29.630 0.00 0.00 45.39 2.43
212 213 9.178758 ACAAGATGATTCCTATACCTTGTTTTC 57.821 33.333 0.00 0.00 39.46 2.29
213 214 8.624776 CAAGATGATTCCTATACCTTGTTTTCC 58.375 37.037 0.00 0.00 0.00 3.13
214 215 7.290813 AGATGATTCCTATACCTTGTTTTCCC 58.709 38.462 0.00 0.00 0.00 3.97
215 216 6.652205 TGATTCCTATACCTTGTTTTCCCT 57.348 37.500 0.00 0.00 0.00 4.20
216 217 7.758820 TGATTCCTATACCTTGTTTTCCCTA 57.241 36.000 0.00 0.00 0.00 3.53
217 218 8.165267 TGATTCCTATACCTTGTTTTCCCTAA 57.835 34.615 0.00 0.00 0.00 2.69
218 219 8.616598 TGATTCCTATACCTTGTTTTCCCTAAA 58.383 33.333 0.00 0.00 0.00 1.85
219 220 9.121658 GATTCCTATACCTTGTTTTCCCTAAAG 57.878 37.037 0.00 0.00 0.00 1.85
220 221 7.817910 TCCTATACCTTGTTTTCCCTAAAGA 57.182 36.000 0.00 0.00 0.00 2.52
221 222 8.222138 TCCTATACCTTGTTTTCCCTAAAGAA 57.778 34.615 0.00 0.00 0.00 2.52
222 223 8.326529 TCCTATACCTTGTTTTCCCTAAAGAAG 58.673 37.037 0.00 0.00 43.29 2.85
250 251 4.708726 AAAATCTGCTTAGCCATGTCAC 57.291 40.909 0.29 0.00 0.00 3.67
251 252 3.354948 AATCTGCTTAGCCATGTCACA 57.645 42.857 0.29 0.00 0.00 3.58
252 253 2.391616 TCTGCTTAGCCATGTCACAG 57.608 50.000 0.29 0.00 0.00 3.66
253 254 1.901833 TCTGCTTAGCCATGTCACAGA 59.098 47.619 0.29 0.00 0.00 3.41
254 255 2.302733 TCTGCTTAGCCATGTCACAGAA 59.697 45.455 0.29 0.00 30.24 3.02
255 256 2.417933 CTGCTTAGCCATGTCACAGAAC 59.582 50.000 0.29 0.00 0.00 3.01
256 257 2.224499 TGCTTAGCCATGTCACAGAACA 60.224 45.455 0.29 0.00 0.00 3.18
257 258 3.012518 GCTTAGCCATGTCACAGAACAT 58.987 45.455 0.00 0.00 40.49 2.71
258 259 3.441572 GCTTAGCCATGTCACAGAACATT 59.558 43.478 0.00 0.00 37.78 2.71
259 260 4.437930 GCTTAGCCATGTCACAGAACATTC 60.438 45.833 0.00 0.00 37.78 2.67
260 261 3.144657 AGCCATGTCACAGAACATTCA 57.855 42.857 0.00 0.00 37.78 2.57
261 262 2.816087 AGCCATGTCACAGAACATTCAC 59.184 45.455 0.00 0.00 37.78 3.18
262 263 2.553602 GCCATGTCACAGAACATTCACA 59.446 45.455 0.00 0.00 37.78 3.58
263 264 3.365666 GCCATGTCACAGAACATTCACAG 60.366 47.826 0.00 0.00 37.78 3.66
264 265 3.817084 CCATGTCACAGAACATTCACAGT 59.183 43.478 0.00 0.00 37.78 3.55
265 266 4.276678 CCATGTCACAGAACATTCACAGTT 59.723 41.667 0.00 0.00 37.78 3.16
266 267 4.880886 TGTCACAGAACATTCACAGTTG 57.119 40.909 0.00 0.00 0.00 3.16
267 268 3.627123 TGTCACAGAACATTCACAGTTGG 59.373 43.478 0.00 0.00 0.00 3.77
268 269 3.627577 GTCACAGAACATTCACAGTTGGT 59.372 43.478 0.00 0.00 0.00 3.67
269 270 4.814234 GTCACAGAACATTCACAGTTGGTA 59.186 41.667 0.00 0.00 0.00 3.25
270 271 5.295787 GTCACAGAACATTCACAGTTGGTAA 59.704 40.000 0.00 0.00 0.00 2.85
271 272 6.017109 GTCACAGAACATTCACAGTTGGTAAT 60.017 38.462 0.00 0.00 0.00 1.89
272 273 6.545666 TCACAGAACATTCACAGTTGGTAATT 59.454 34.615 0.00 0.00 0.00 1.40
273 274 7.717436 TCACAGAACATTCACAGTTGGTAATTA 59.283 33.333 0.00 0.00 0.00 1.40
274 275 8.349245 CACAGAACATTCACAGTTGGTAATTAA 58.651 33.333 0.00 0.00 0.00 1.40
275 276 8.908903 ACAGAACATTCACAGTTGGTAATTAAA 58.091 29.630 0.00 0.00 0.00 1.52
276 277 9.912634 CAGAACATTCACAGTTGGTAATTAAAT 57.087 29.630 0.00 0.00 0.00 1.40
349 350 9.713713 ATTAAATTGGCAACGGTAAATTTTAGT 57.286 25.926 0.00 0.00 42.51 2.24
350 351 9.543783 TTAAATTGGCAACGGTAAATTTTAGTT 57.456 25.926 0.00 0.00 42.51 2.24
351 352 8.439993 AAATTGGCAACGGTAAATTTTAGTTT 57.560 26.923 0.00 0.00 42.51 2.66
352 353 9.543783 AAATTGGCAACGGTAAATTTTAGTTTA 57.456 25.926 0.00 0.00 42.51 2.01
353 354 9.543783 AATTGGCAACGGTAAATTTTAGTTTAA 57.456 25.926 0.00 0.00 42.51 1.52
354 355 7.927305 TGGCAACGGTAAATTTTAGTTTAAC 57.073 32.000 0.00 0.00 42.51 2.01
355 356 7.486647 TGGCAACGGTAAATTTTAGTTTAACA 58.513 30.769 0.00 0.00 42.51 2.41
356 357 7.434602 TGGCAACGGTAAATTTTAGTTTAACAC 59.565 33.333 0.00 0.00 42.51 3.32
357 358 7.434602 GGCAACGGTAAATTTTAGTTTAACACA 59.565 33.333 0.00 0.00 32.12 3.72
358 359 8.473796 GCAACGGTAAATTTTAGTTTAACACAG 58.526 33.333 0.00 0.00 32.12 3.66
359 360 9.505995 CAACGGTAAATTTTAGTTTAACACAGT 57.494 29.630 0.00 0.00 32.12 3.55
360 361 9.505995 AACGGTAAATTTTAGTTTAACACAGTG 57.494 29.630 0.00 0.00 32.12 3.66
361 362 7.644945 ACGGTAAATTTTAGTTTAACACAGTGC 59.355 33.333 0.00 0.00 32.12 4.40
362 363 7.644551 CGGTAAATTTTAGTTTAACACAGTGCA 59.355 33.333 0.00 0.00 32.12 4.57
363 364 9.303537 GGTAAATTTTAGTTTAACACAGTGCAA 57.696 29.630 0.00 0.00 32.72 4.08
373 374 9.762933 AGTTTAACACAGTGCAATAATTCATTT 57.237 25.926 0.00 0.00 0.00 2.32
403 404 9.690913 AGTGGAAAATGAATGATATGAAAGAGA 57.309 29.630 0.00 0.00 0.00 3.10
421 422 9.862371 TGAAAGAGAAGAAGATGTAACATACTC 57.138 33.333 0.00 0.00 0.00 2.59
425 426 8.846211 AGAGAAGAAGATGTAACATACTCTAGC 58.154 37.037 0.00 0.00 30.83 3.42
426 427 8.526667 AGAAGAAGATGTAACATACTCTAGCA 57.473 34.615 0.00 0.00 0.00 3.49
427 428 8.972127 AGAAGAAGATGTAACATACTCTAGCAA 58.028 33.333 0.00 0.00 0.00 3.91
428 429 9.587772 GAAGAAGATGTAACATACTCTAGCAAA 57.412 33.333 0.00 0.00 0.00 3.68
429 430 9.593134 AAGAAGATGTAACATACTCTAGCAAAG 57.407 33.333 0.00 0.00 0.00 2.77
430 431 7.708752 AGAAGATGTAACATACTCTAGCAAAGC 59.291 37.037 0.00 0.00 0.00 3.51
431 432 5.980116 AGATGTAACATACTCTAGCAAAGCG 59.020 40.000 0.00 0.00 0.00 4.68
432 433 4.430007 TGTAACATACTCTAGCAAAGCGG 58.570 43.478 0.00 0.00 0.00 5.52
433 434 2.604046 ACATACTCTAGCAAAGCGGG 57.396 50.000 0.00 0.00 0.00 6.13
434 435 2.108168 ACATACTCTAGCAAAGCGGGA 58.892 47.619 0.00 0.00 0.00 5.14
435 436 2.500098 ACATACTCTAGCAAAGCGGGAA 59.500 45.455 0.00 0.00 0.00 3.97
436 437 2.961526 TACTCTAGCAAAGCGGGAAG 57.038 50.000 0.00 0.00 0.00 3.46
447 448 2.250646 GCGGGAAGCCGTAAAAAGT 58.749 52.632 0.00 0.00 40.81 2.66
448 449 0.109919 GCGGGAAGCCGTAAAAAGTG 60.110 55.000 0.00 0.00 40.81 3.16
449 450 0.109919 CGGGAAGCCGTAAAAAGTGC 60.110 55.000 0.00 0.00 0.00 4.40
450 451 0.955905 GGGAAGCCGTAAAAAGTGCA 59.044 50.000 0.00 0.00 0.00 4.57
451 452 1.338655 GGGAAGCCGTAAAAAGTGCAA 59.661 47.619 0.00 0.00 0.00 4.08
452 453 2.390938 GGAAGCCGTAAAAAGTGCAAC 58.609 47.619 0.00 0.00 0.00 4.17
453 454 2.223618 GGAAGCCGTAAAAAGTGCAACA 60.224 45.455 0.00 0.00 41.43 3.33
454 455 3.552068 GGAAGCCGTAAAAAGTGCAACAT 60.552 43.478 0.00 0.00 41.43 2.71
455 456 4.320641 GGAAGCCGTAAAAAGTGCAACATA 60.321 41.667 0.00 0.00 41.43 2.29
456 457 4.155310 AGCCGTAAAAAGTGCAACATAC 57.845 40.909 0.00 0.00 41.43 2.39
457 458 3.566322 AGCCGTAAAAAGTGCAACATACA 59.434 39.130 0.00 0.00 41.43 2.29
458 459 4.036971 AGCCGTAAAAAGTGCAACATACAA 59.963 37.500 0.00 0.00 41.43 2.41
459 460 4.920927 GCCGTAAAAAGTGCAACATACAAT 59.079 37.500 0.00 0.00 41.43 2.71
460 461 5.404066 GCCGTAAAAAGTGCAACATACAATT 59.596 36.000 0.00 0.00 41.43 2.32
461 462 6.583050 GCCGTAAAAAGTGCAACATACAATTA 59.417 34.615 0.00 0.00 41.43 1.40
462 463 7.274686 GCCGTAAAAAGTGCAACATACAATTAT 59.725 33.333 0.00 0.00 41.43 1.28
463 464 9.776158 CCGTAAAAAGTGCAACATACAATTATA 57.224 29.630 0.00 0.00 41.43 0.98
486 487 8.934507 ATAAGACATTTCCAAAAACACGAAAA 57.065 26.923 0.00 0.00 0.00 2.29
487 488 7.659652 AAGACATTTCCAAAAACACGAAAAA 57.340 28.000 0.00 0.00 0.00 1.94
511 512 7.951530 AAAAATCAAGGTAGTGCATTCTTTG 57.048 32.000 0.00 0.00 0.00 2.77
512 513 6.655078 AAATCAAGGTAGTGCATTCTTTGT 57.345 33.333 0.00 0.00 0.00 2.83
513 514 7.759489 AAATCAAGGTAGTGCATTCTTTGTA 57.241 32.000 0.00 0.00 0.00 2.41
514 515 6.992063 ATCAAGGTAGTGCATTCTTTGTAG 57.008 37.500 0.00 0.00 0.00 2.74
515 516 6.109156 TCAAGGTAGTGCATTCTTTGTAGA 57.891 37.500 0.00 0.00 0.00 2.59
516 517 6.711277 TCAAGGTAGTGCATTCTTTGTAGAT 58.289 36.000 0.00 0.00 0.00 1.98
517 518 7.847096 TCAAGGTAGTGCATTCTTTGTAGATA 58.153 34.615 0.00 0.00 0.00 1.98
518 519 7.981789 TCAAGGTAGTGCATTCTTTGTAGATAG 59.018 37.037 0.00 0.00 0.00 2.08
519 520 7.661536 AGGTAGTGCATTCTTTGTAGATAGA 57.338 36.000 0.00 0.00 0.00 1.98
520 521 8.079211 AGGTAGTGCATTCTTTGTAGATAGAA 57.921 34.615 0.00 0.00 35.08 2.10
521 522 8.540388 AGGTAGTGCATTCTTTGTAGATAGAAA 58.460 33.333 0.00 0.00 34.35 2.52
522 523 9.162764 GGTAGTGCATTCTTTGTAGATAGAAAA 57.837 33.333 0.00 0.00 34.35 2.29
525 526 8.734386 AGTGCATTCTTTGTAGATAGAAAAAGG 58.266 33.333 0.00 0.00 34.35 3.11
526 527 8.515414 GTGCATTCTTTGTAGATAGAAAAAGGT 58.485 33.333 0.00 0.00 34.35 3.50
527 528 8.514594 TGCATTCTTTGTAGATAGAAAAAGGTG 58.485 33.333 0.00 0.00 34.35 4.00
528 529 8.515414 GCATTCTTTGTAGATAGAAAAAGGTGT 58.485 33.333 0.00 0.00 34.35 4.16
531 532 8.974060 TCTTTGTAGATAGAAAAAGGTGTTGT 57.026 30.769 0.00 0.00 31.87 3.32
543 544 9.403583 AGAAAAAGGTGTTGTATTCTTTGTAGA 57.596 29.630 0.00 0.00 30.89 2.59
561 562 9.846248 CTTTGTAGATAGAAAAAGTTGAATGGG 57.154 33.333 0.00 0.00 0.00 4.00
562 563 8.934023 TTGTAGATAGAAAAAGTTGAATGGGT 57.066 30.769 0.00 0.00 0.00 4.51
563 564 8.335532 TGTAGATAGAAAAAGTTGAATGGGTG 57.664 34.615 0.00 0.00 0.00 4.61
564 565 7.942341 TGTAGATAGAAAAAGTTGAATGGGTGT 59.058 33.333 0.00 0.00 0.00 4.16
565 566 7.219484 AGATAGAAAAAGTTGAATGGGTGTG 57.781 36.000 0.00 0.00 0.00 3.82
566 567 7.004086 AGATAGAAAAAGTTGAATGGGTGTGA 58.996 34.615 0.00 0.00 0.00 3.58
567 568 5.262588 AGAAAAAGTTGAATGGGTGTGAC 57.737 39.130 0.00 0.00 0.00 3.67
568 569 4.956075 AGAAAAAGTTGAATGGGTGTGACT 59.044 37.500 0.00 0.00 0.00 3.41
569 570 4.654091 AAAAGTTGAATGGGTGTGACTG 57.346 40.909 0.00 0.00 0.00 3.51
570 571 3.297134 AAGTTGAATGGGTGTGACTGT 57.703 42.857 0.00 0.00 0.00 3.55
571 572 4.431416 AAGTTGAATGGGTGTGACTGTA 57.569 40.909 0.00 0.00 0.00 2.74
572 573 4.008074 AGTTGAATGGGTGTGACTGTAG 57.992 45.455 0.00 0.00 0.00 2.74
573 574 3.074412 GTTGAATGGGTGTGACTGTAGG 58.926 50.000 0.00 0.00 0.00 3.18
574 575 2.334977 TGAATGGGTGTGACTGTAGGT 58.665 47.619 0.00 0.00 0.00 3.08
575 576 3.512496 TGAATGGGTGTGACTGTAGGTA 58.488 45.455 0.00 0.00 0.00 3.08
576 577 3.259876 TGAATGGGTGTGACTGTAGGTAC 59.740 47.826 0.00 0.00 0.00 3.34
577 578 2.385135 TGGGTGTGACTGTAGGTACA 57.615 50.000 0.00 0.00 34.56 2.90
590 591 6.621316 CTGTAGGTACAGTAGTATGACCAG 57.379 45.833 8.73 0.00 46.51 4.00
591 592 6.317663 TGTAGGTACAGTAGTATGACCAGA 57.682 41.667 0.00 0.00 31.84 3.86
592 593 6.724351 TGTAGGTACAGTAGTATGACCAGAA 58.276 40.000 0.00 0.00 31.84 3.02
593 594 6.600822 TGTAGGTACAGTAGTATGACCAGAAC 59.399 42.308 0.00 0.00 31.84 3.01
594 595 4.954826 AGGTACAGTAGTATGACCAGAACC 59.045 45.833 0.00 0.00 31.84 3.62
595 596 4.708421 GGTACAGTAGTATGACCAGAACCA 59.292 45.833 0.00 0.00 31.84 3.67
596 597 5.363005 GGTACAGTAGTATGACCAGAACCAT 59.637 44.000 0.00 0.00 31.84 3.55
597 598 5.344743 ACAGTAGTATGACCAGAACCATG 57.655 43.478 0.00 0.00 0.00 3.66
598 599 4.162320 ACAGTAGTATGACCAGAACCATGG 59.838 45.833 11.19 11.19 46.47 3.66
599 600 3.711704 AGTAGTATGACCAGAACCATGGG 59.288 47.826 18.09 0.00 45.25 4.00
602 603 2.668632 GACCAGAACCATGGGCGA 59.331 61.111 18.09 0.00 45.25 5.54
603 604 1.224592 GACCAGAACCATGGGCGAT 59.775 57.895 18.09 0.00 45.25 4.58
604 605 1.077501 ACCAGAACCATGGGCGATG 60.078 57.895 18.09 8.98 45.25 3.84
605 606 1.224315 CCAGAACCATGGGCGATGA 59.776 57.895 18.09 0.00 36.64 2.92
606 607 0.394216 CCAGAACCATGGGCGATGAA 60.394 55.000 18.09 0.00 36.64 2.57
607 608 1.462616 CAGAACCATGGGCGATGAAA 58.537 50.000 18.09 0.00 33.31 2.69
608 609 1.133025 CAGAACCATGGGCGATGAAAC 59.867 52.381 18.09 1.94 33.31 2.78
609 610 1.004745 AGAACCATGGGCGATGAAACT 59.995 47.619 18.09 4.12 33.31 2.66
610 611 2.238646 AGAACCATGGGCGATGAAACTA 59.761 45.455 18.09 0.00 33.31 2.24
611 612 2.038387 ACCATGGGCGATGAAACTAC 57.962 50.000 18.09 0.00 33.31 2.73
612 613 1.280710 ACCATGGGCGATGAAACTACA 59.719 47.619 18.09 0.00 33.31 2.74
613 614 1.942657 CCATGGGCGATGAAACTACAG 59.057 52.381 11.37 0.00 33.31 2.74
614 615 1.942657 CATGGGCGATGAAACTACAGG 59.057 52.381 3.03 0.00 33.31 4.00
615 616 0.981183 TGGGCGATGAAACTACAGGT 59.019 50.000 0.00 0.00 0.00 4.00
616 617 1.349688 TGGGCGATGAAACTACAGGTT 59.650 47.619 0.00 0.00 40.28 3.50
617 618 2.568062 TGGGCGATGAAACTACAGGTTA 59.432 45.455 0.00 0.00 37.12 2.85
618 619 2.934553 GGGCGATGAAACTACAGGTTAC 59.065 50.000 0.00 0.00 37.12 2.50
619 620 3.369157 GGGCGATGAAACTACAGGTTACT 60.369 47.826 0.00 0.00 37.12 2.24
631 632 3.252974 CAGGTTACTGTCCATGAGACC 57.747 52.381 10.60 0.00 45.68 3.85
632 633 2.567169 CAGGTTACTGTCCATGAGACCA 59.433 50.000 10.60 1.26 45.68 4.02
633 634 2.834549 AGGTTACTGTCCATGAGACCAG 59.165 50.000 10.60 10.13 45.68 4.00
634 635 2.567615 GGTTACTGTCCATGAGACCAGT 59.432 50.000 10.60 13.78 45.68 4.00
635 636 3.767673 GGTTACTGTCCATGAGACCAGTA 59.232 47.826 10.60 13.09 45.68 2.74
636 637 4.381718 GGTTACTGTCCATGAGACCAGTAC 60.382 50.000 16.54 13.68 45.68 2.73
637 638 3.176924 ACTGTCCATGAGACCAGTACT 57.823 47.619 10.60 0.00 45.68 2.73
638 639 3.511477 ACTGTCCATGAGACCAGTACTT 58.489 45.455 10.60 0.00 45.68 2.24
639 640 3.259374 ACTGTCCATGAGACCAGTACTTG 59.741 47.826 10.60 0.00 45.68 3.16
640 641 2.028112 TGTCCATGAGACCAGTACTTGC 60.028 50.000 10.60 0.00 45.68 4.01
641 642 1.555075 TCCATGAGACCAGTACTTGCC 59.445 52.381 0.00 0.00 0.00 4.52
642 643 1.278985 CCATGAGACCAGTACTTGCCA 59.721 52.381 0.00 0.00 0.00 4.92
643 644 2.092753 CCATGAGACCAGTACTTGCCAT 60.093 50.000 0.00 0.00 0.00 4.40
644 645 3.134623 CCATGAGACCAGTACTTGCCATA 59.865 47.826 0.00 0.00 0.00 2.74
645 646 4.375272 CATGAGACCAGTACTTGCCATAG 58.625 47.826 0.00 0.00 0.00 2.23
646 647 3.708451 TGAGACCAGTACTTGCCATAGA 58.292 45.455 0.00 0.00 0.00 1.98
647 648 4.093743 TGAGACCAGTACTTGCCATAGAA 58.906 43.478 0.00 0.00 0.00 2.10
648 649 4.530553 TGAGACCAGTACTTGCCATAGAAA 59.469 41.667 0.00 0.00 0.00 2.52
649 650 5.189736 TGAGACCAGTACTTGCCATAGAAAT 59.810 40.000 0.00 0.00 0.00 2.17
650 651 6.382859 TGAGACCAGTACTTGCCATAGAAATA 59.617 38.462 0.00 0.00 0.00 1.40
651 652 7.093068 TGAGACCAGTACTTGCCATAGAAATAA 60.093 37.037 0.00 0.00 0.00 1.40
652 653 7.806180 AGACCAGTACTTGCCATAGAAATAAT 58.194 34.615 0.00 0.00 0.00 1.28
653 654 7.934120 AGACCAGTACTTGCCATAGAAATAATC 59.066 37.037 0.00 0.00 0.00 1.75
654 655 7.806180 ACCAGTACTTGCCATAGAAATAATCT 58.194 34.615 0.00 0.00 42.48 2.40
655 656 8.275040 ACCAGTACTTGCCATAGAAATAATCTT 58.725 33.333 0.00 0.00 39.71 2.40
656 657 9.778741 CCAGTACTTGCCATAGAAATAATCTTA 57.221 33.333 0.00 0.00 39.71 2.10
741 742 7.831753 ACATAGTGATACATATAGACAGCACC 58.168 38.462 0.00 0.00 0.00 5.01
742 743 7.671819 ACATAGTGATACATATAGACAGCACCT 59.328 37.037 0.00 0.00 0.00 4.00
743 744 6.582677 AGTGATACATATAGACAGCACCTC 57.417 41.667 0.00 0.00 0.00 3.85
744 745 6.310941 AGTGATACATATAGACAGCACCTCT 58.689 40.000 0.00 0.00 0.00 3.69
745 746 6.780031 AGTGATACATATAGACAGCACCTCTT 59.220 38.462 0.00 0.00 0.00 2.85
746 747 7.288852 AGTGATACATATAGACAGCACCTCTTT 59.711 37.037 0.00 0.00 0.00 2.52
747 748 8.577296 GTGATACATATAGACAGCACCTCTTTA 58.423 37.037 0.00 0.00 0.00 1.85
748 749 8.797438 TGATACATATAGACAGCACCTCTTTAG 58.203 37.037 0.00 0.00 0.00 1.85
749 750 8.713708 ATACATATAGACAGCACCTCTTTAGT 57.286 34.615 0.00 0.00 0.00 2.24
750 751 7.045126 ACATATAGACAGCACCTCTTTAGTC 57.955 40.000 0.00 0.00 0.00 2.59
751 752 6.836527 ACATATAGACAGCACCTCTTTAGTCT 59.163 38.462 0.00 0.00 39.43 3.24
752 753 3.951775 AGACAGCACCTCTTTAGTCTG 57.048 47.619 0.00 0.00 35.24 3.51
753 754 3.501349 AGACAGCACCTCTTTAGTCTGA 58.499 45.455 0.00 0.00 35.24 3.27
754 755 4.093011 AGACAGCACCTCTTTAGTCTGAT 58.907 43.478 0.00 0.00 35.24 2.90
755 756 4.159506 AGACAGCACCTCTTTAGTCTGATC 59.840 45.833 0.00 0.00 35.24 2.92
756 757 3.119316 ACAGCACCTCTTTAGTCTGATCG 60.119 47.826 0.00 0.00 0.00 3.69
757 758 3.093057 AGCACCTCTTTAGTCTGATCGT 58.907 45.455 0.00 0.00 0.00 3.73
758 759 3.511934 AGCACCTCTTTAGTCTGATCGTT 59.488 43.478 0.00 0.00 0.00 3.85
759 760 3.860536 GCACCTCTTTAGTCTGATCGTTC 59.139 47.826 0.00 0.00 0.00 3.95
760 761 4.425520 CACCTCTTTAGTCTGATCGTTCC 58.574 47.826 0.00 0.00 0.00 3.62
761 762 3.447944 ACCTCTTTAGTCTGATCGTTCCC 59.552 47.826 0.00 0.00 0.00 3.97
762 763 3.702045 CCTCTTTAGTCTGATCGTTCCCT 59.298 47.826 0.00 0.00 0.00 4.20
763 764 4.202070 CCTCTTTAGTCTGATCGTTCCCTC 60.202 50.000 0.00 0.00 0.00 4.30
764 765 3.377485 TCTTTAGTCTGATCGTTCCCTCG 59.623 47.826 0.00 0.00 0.00 4.63
765 766 2.704464 TAGTCTGATCGTTCCCTCGA 57.296 50.000 0.00 0.00 43.86 4.04
766 767 1.384525 AGTCTGATCGTTCCCTCGAG 58.615 55.000 5.13 5.13 43.00 4.04
767 768 1.096416 GTCTGATCGTTCCCTCGAGT 58.904 55.000 12.31 0.00 43.00 4.18
768 769 1.095600 TCTGATCGTTCCCTCGAGTG 58.904 55.000 12.31 0.00 43.00 3.51
769 770 1.095600 CTGATCGTTCCCTCGAGTGA 58.904 55.000 12.31 1.68 43.00 3.41
770 771 1.678627 CTGATCGTTCCCTCGAGTGAT 59.321 52.381 12.31 6.39 43.00 3.06
771 772 1.676529 TGATCGTTCCCTCGAGTGATC 59.323 52.381 12.31 14.61 43.00 2.92
772 773 0.663688 ATCGTTCCCTCGAGTGATCG 59.336 55.000 18.54 18.54 43.00 3.69
773 774 1.064296 CGTTCCCTCGAGTGATCGG 59.936 63.158 17.32 9.01 0.00 4.18
774 775 1.654954 CGTTCCCTCGAGTGATCGGT 61.655 60.000 17.32 0.00 0.00 4.69
775 776 0.100861 GTTCCCTCGAGTGATCGGTC 59.899 60.000 12.31 0.00 0.00 4.79
776 777 0.323087 TTCCCTCGAGTGATCGGTCA 60.323 55.000 12.31 0.00 0.00 4.02
784 785 4.736739 TGATCGGTCACTCCTCGT 57.263 55.556 0.00 0.00 0.00 4.18
785 786 2.478989 TGATCGGTCACTCCTCGTC 58.521 57.895 0.00 0.00 0.00 4.20
786 787 0.322187 TGATCGGTCACTCCTCGTCA 60.322 55.000 0.00 0.00 0.00 4.35
787 788 0.809385 GATCGGTCACTCCTCGTCAA 59.191 55.000 0.00 0.00 0.00 3.18
788 789 0.526662 ATCGGTCACTCCTCGTCAAC 59.473 55.000 0.00 0.00 0.00 3.18
789 790 1.080705 CGGTCACTCCTCGTCAACC 60.081 63.158 0.00 0.00 0.00 3.77
790 791 1.524863 CGGTCACTCCTCGTCAACCT 61.525 60.000 0.00 0.00 0.00 3.50
791 792 0.680061 GGTCACTCCTCGTCAACCTT 59.320 55.000 0.00 0.00 0.00 3.50
792 793 1.605712 GGTCACTCCTCGTCAACCTTG 60.606 57.143 0.00 0.00 0.00 3.61
793 794 1.068741 GTCACTCCTCGTCAACCTTGT 59.931 52.381 0.00 0.00 0.00 3.16
794 795 1.760613 TCACTCCTCGTCAACCTTGTT 59.239 47.619 0.00 0.00 0.00 2.83
795 796 2.135933 CACTCCTCGTCAACCTTGTTC 58.864 52.381 0.00 0.00 0.00 3.18
796 797 2.040178 ACTCCTCGTCAACCTTGTTCT 58.960 47.619 0.00 0.00 0.00 3.01
797 798 2.224066 ACTCCTCGTCAACCTTGTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
798 799 2.035961 CTCCTCGTCAACCTTGTTCTGA 59.964 50.000 0.00 0.00 0.00 3.27
799 800 2.035961 TCCTCGTCAACCTTGTTCTGAG 59.964 50.000 0.00 0.00 0.00 3.35
800 801 2.224066 CCTCGTCAACCTTGTTCTGAGT 60.224 50.000 0.00 0.00 0.00 3.41
877 879 7.323052 AGTATATTTCCCTTCTCCATTCTCC 57.677 40.000 0.00 0.00 0.00 3.71
927 929 2.351924 ATTGCTGTGGGTCCCGTGTT 62.352 55.000 2.65 0.00 0.00 3.32
1100 1102 6.127451 CCTTGGTATTCAGGTTGTAAAATCCC 60.127 42.308 0.00 0.00 0.00 3.85
1313 1315 4.220382 CCTCATCTGGTGATAGATCCTCAC 59.780 50.000 14.69 14.69 41.83 3.51
1508 1510 7.987649 TCTTTTTCTTTTAGGTCGTTTAGCAA 58.012 30.769 0.00 0.00 0.00 3.91
1668 1670 8.352942 CCTGTAGTTTTGAAGCTAAAAAGACAT 58.647 33.333 15.53 5.47 31.53 3.06
1681 1683 1.599606 AAGACATCAGCGAGCTCCGT 61.600 55.000 8.47 0.00 41.15 4.69
1959 1961 3.172106 TCTTGGTTGGTGCCGGGA 61.172 61.111 2.18 0.00 0.00 5.14
2139 2142 8.428063 AGTTCTACCCATAGAAAAGATCATGAG 58.572 37.037 0.09 0.00 46.64 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.090831 GCAGACTTGGATAGTATCACATCATTA 58.909 37.037 12.19 0.00 37.17 1.90
50 51 6.933521 GCAGACTTGGATAGTATCACATCATT 59.066 38.462 12.19 0.00 37.17 2.57
51 52 6.269538 AGCAGACTTGGATAGTATCACATCAT 59.730 38.462 12.19 0.00 37.17 2.45
52 53 5.600069 AGCAGACTTGGATAGTATCACATCA 59.400 40.000 12.19 0.00 37.17 3.07
53 54 6.095432 AGCAGACTTGGATAGTATCACATC 57.905 41.667 12.19 4.15 37.17 3.06
54 55 7.789202 ATAGCAGACTTGGATAGTATCACAT 57.211 36.000 12.19 0.00 37.17 3.21
55 56 8.706322 TTATAGCAGACTTGGATAGTATCACA 57.294 34.615 12.19 5.08 37.17 3.58
61 62 8.924303 TGTTGTATTATAGCAGACTTGGATAGT 58.076 33.333 0.00 0.00 40.71 2.12
62 63 9.935241 ATGTTGTATTATAGCAGACTTGGATAG 57.065 33.333 0.00 0.00 0.00 2.08
63 64 9.710900 CATGTTGTATTATAGCAGACTTGGATA 57.289 33.333 0.00 0.00 0.00 2.59
64 65 7.173907 GCATGTTGTATTATAGCAGACTTGGAT 59.826 37.037 0.00 0.00 0.00 3.41
65 66 6.483307 GCATGTTGTATTATAGCAGACTTGGA 59.517 38.462 0.00 0.00 0.00 3.53
66 67 6.293626 GGCATGTTGTATTATAGCAGACTTGG 60.294 42.308 0.00 0.00 0.00 3.61
67 68 6.260714 TGGCATGTTGTATTATAGCAGACTTG 59.739 38.462 0.00 0.00 0.00 3.16
68 69 6.356556 TGGCATGTTGTATTATAGCAGACTT 58.643 36.000 0.00 0.00 0.00 3.01
69 70 5.928976 TGGCATGTTGTATTATAGCAGACT 58.071 37.500 0.00 0.00 0.00 3.24
70 71 6.430451 GTTGGCATGTTGTATTATAGCAGAC 58.570 40.000 0.00 0.00 0.00 3.51
71 72 5.530915 GGTTGGCATGTTGTATTATAGCAGA 59.469 40.000 0.00 0.00 0.00 4.26
72 73 5.532406 AGGTTGGCATGTTGTATTATAGCAG 59.468 40.000 0.00 0.00 0.00 4.24
73 74 5.445069 AGGTTGGCATGTTGTATTATAGCA 58.555 37.500 0.00 0.00 0.00 3.49
74 75 6.485313 TGTAGGTTGGCATGTTGTATTATAGC 59.515 38.462 0.00 0.00 0.00 2.97
75 76 7.497579 TGTGTAGGTTGGCATGTTGTATTATAG 59.502 37.037 0.00 0.00 0.00 1.31
76 77 7.339482 TGTGTAGGTTGGCATGTTGTATTATA 58.661 34.615 0.00 0.00 0.00 0.98
77 78 6.184068 TGTGTAGGTTGGCATGTTGTATTAT 58.816 36.000 0.00 0.00 0.00 1.28
78 79 5.561679 TGTGTAGGTTGGCATGTTGTATTA 58.438 37.500 0.00 0.00 0.00 0.98
79 80 4.402829 TGTGTAGGTTGGCATGTTGTATT 58.597 39.130 0.00 0.00 0.00 1.89
80 81 4.027674 TGTGTAGGTTGGCATGTTGTAT 57.972 40.909 0.00 0.00 0.00 2.29
81 82 3.493767 TGTGTAGGTTGGCATGTTGTA 57.506 42.857 0.00 0.00 0.00 2.41
82 83 2.356665 TGTGTAGGTTGGCATGTTGT 57.643 45.000 0.00 0.00 0.00 3.32
83 84 2.819019 TGATGTGTAGGTTGGCATGTTG 59.181 45.455 0.00 0.00 0.00 3.33
84 85 3.084039 CTGATGTGTAGGTTGGCATGTT 58.916 45.455 0.00 0.00 0.00 2.71
85 86 2.618816 CCTGATGTGTAGGTTGGCATGT 60.619 50.000 0.00 0.00 0.00 3.21
86 87 2.019249 CCTGATGTGTAGGTTGGCATG 58.981 52.381 0.00 0.00 0.00 4.06
87 88 1.915489 TCCTGATGTGTAGGTTGGCAT 59.085 47.619 0.00 0.00 36.67 4.40
88 89 1.357137 TCCTGATGTGTAGGTTGGCA 58.643 50.000 0.00 0.00 36.67 4.92
89 90 2.489938 TTCCTGATGTGTAGGTTGGC 57.510 50.000 0.00 0.00 36.67 4.52
90 91 4.220693 TCATTCCTGATGTGTAGGTTGG 57.779 45.455 0.00 0.00 37.06 3.77
91 92 6.573664 TTTTCATTCCTGATGTGTAGGTTG 57.426 37.500 0.00 0.00 37.06 3.77
114 115 9.646522 AGCATTGGACATAATTATTCCTACTTT 57.353 29.630 19.04 7.39 0.00 2.66
119 120 8.850156 GTGTTAGCATTGGACATAATTATTCCT 58.150 33.333 19.04 8.27 0.00 3.36
120 121 8.629158 TGTGTTAGCATTGGACATAATTATTCC 58.371 33.333 14.74 14.74 0.00 3.01
122 123 9.970395 CATGTGTTAGCATTGGACATAATTATT 57.030 29.630 0.00 0.00 0.00 1.40
123 124 9.135189 ACATGTGTTAGCATTGGACATAATTAT 57.865 29.630 0.00 0.00 0.00 1.28
124 125 8.404765 CACATGTGTTAGCATTGGACATAATTA 58.595 33.333 18.03 0.00 0.00 1.40
125 126 7.122501 TCACATGTGTTAGCATTGGACATAATT 59.877 33.333 24.63 0.00 0.00 1.40
126 127 6.602803 TCACATGTGTTAGCATTGGACATAAT 59.397 34.615 24.63 0.00 0.00 1.28
127 128 5.942826 TCACATGTGTTAGCATTGGACATAA 59.057 36.000 24.63 0.00 0.00 1.90
128 129 5.353956 GTCACATGTGTTAGCATTGGACATA 59.646 40.000 24.63 0.00 33.30 2.29
129 130 4.156556 GTCACATGTGTTAGCATTGGACAT 59.843 41.667 24.63 0.00 33.30 3.06
130 131 3.501828 GTCACATGTGTTAGCATTGGACA 59.498 43.478 24.63 0.00 33.30 4.02
131 132 3.501828 TGTCACATGTGTTAGCATTGGAC 59.498 43.478 24.63 12.08 33.50 4.02
132 133 3.749226 TGTCACATGTGTTAGCATTGGA 58.251 40.909 24.63 0.00 0.00 3.53
133 134 4.417506 CATGTCACATGTGTTAGCATTGG 58.582 43.478 24.63 10.54 0.00 3.16
134 135 3.855379 GCATGTCACATGTGTTAGCATTG 59.145 43.478 24.63 17.01 0.00 2.82
135 136 3.760151 AGCATGTCACATGTGTTAGCATT 59.240 39.130 24.63 8.11 0.00 3.56
136 137 3.349927 AGCATGTCACATGTGTTAGCAT 58.650 40.909 24.63 19.48 0.00 3.79
137 138 2.781923 AGCATGTCACATGTGTTAGCA 58.218 42.857 24.63 18.30 0.00 3.49
138 139 3.426695 GGAAGCATGTCACATGTGTTAGC 60.427 47.826 24.63 21.74 0.00 3.09
139 140 3.752747 TGGAAGCATGTCACATGTGTTAG 59.247 43.478 24.63 14.16 0.00 2.34
140 141 3.749226 TGGAAGCATGTCACATGTGTTA 58.251 40.909 24.63 15.21 0.00 2.41
141 142 2.555325 CTGGAAGCATGTCACATGTGTT 59.445 45.455 24.63 12.66 0.00 3.32
142 143 2.156917 CTGGAAGCATGTCACATGTGT 58.843 47.619 24.63 7.32 0.00 3.72
143 144 2.913777 CTGGAAGCATGTCACATGTG 57.086 50.000 20.18 20.18 0.00 3.21
156 157 2.985282 TTTGGCTGCGGCTGGAAG 60.985 61.111 18.85 0.00 38.73 3.46
157 158 3.294493 GTTTGGCTGCGGCTGGAA 61.294 61.111 18.85 7.06 38.73 3.53
158 159 4.577677 TGTTTGGCTGCGGCTGGA 62.578 61.111 18.85 0.26 38.73 3.86
159 160 4.347453 GTGTTTGGCTGCGGCTGG 62.347 66.667 18.85 0.00 38.73 4.85
160 161 4.347453 GGTGTTTGGCTGCGGCTG 62.347 66.667 18.85 1.15 38.73 4.85
161 162 4.892965 TGGTGTTTGGCTGCGGCT 62.893 61.111 18.85 0.00 38.73 5.52
162 163 3.438017 TTTGGTGTTTGGCTGCGGC 62.438 57.895 9.72 9.72 37.82 6.53
163 164 1.591327 GTTTGGTGTTTGGCTGCGG 60.591 57.895 0.00 0.00 0.00 5.69
164 165 1.140589 TGTTTGGTGTTTGGCTGCG 59.859 52.632 0.00 0.00 0.00 5.18
165 166 0.108424 TGTGTTTGGTGTTTGGCTGC 60.108 50.000 0.00 0.00 0.00 5.25
166 167 2.376808 TTGTGTTTGGTGTTTGGCTG 57.623 45.000 0.00 0.00 0.00 4.85
167 168 2.037772 TGTTTGTGTTTGGTGTTTGGCT 59.962 40.909 0.00 0.00 0.00 4.75
168 169 2.417719 TGTTTGTGTTTGGTGTTTGGC 58.582 42.857 0.00 0.00 0.00 4.52
169 170 4.310769 TCTTGTTTGTGTTTGGTGTTTGG 58.689 39.130 0.00 0.00 0.00 3.28
170 171 5.636965 TCATCTTGTTTGTGTTTGGTGTTTG 59.363 36.000 0.00 0.00 0.00 2.93
171 172 5.788450 TCATCTTGTTTGTGTTTGGTGTTT 58.212 33.333 0.00 0.00 0.00 2.83
172 173 5.398603 TCATCTTGTTTGTGTTTGGTGTT 57.601 34.783 0.00 0.00 0.00 3.32
173 174 5.596836 ATCATCTTGTTTGTGTTTGGTGT 57.403 34.783 0.00 0.00 0.00 4.16
174 175 5.463061 GGAATCATCTTGTTTGTGTTTGGTG 59.537 40.000 0.00 0.00 0.00 4.17
175 176 5.363580 AGGAATCATCTTGTTTGTGTTTGGT 59.636 36.000 0.00 0.00 0.00 3.67
176 177 5.846203 AGGAATCATCTTGTTTGTGTTTGG 58.154 37.500 0.00 0.00 0.00 3.28
177 178 9.559958 GTATAGGAATCATCTTGTTTGTGTTTG 57.440 33.333 0.00 0.00 0.00 2.93
178 179 8.739972 GGTATAGGAATCATCTTGTTTGTGTTT 58.260 33.333 0.00 0.00 0.00 2.83
179 180 8.109634 AGGTATAGGAATCATCTTGTTTGTGTT 58.890 33.333 0.00 0.00 0.00 3.32
180 181 7.633789 AGGTATAGGAATCATCTTGTTTGTGT 58.366 34.615 0.00 0.00 0.00 3.72
181 182 8.400947 CAAGGTATAGGAATCATCTTGTTTGTG 58.599 37.037 0.00 0.00 0.00 3.33
182 183 8.109634 ACAAGGTATAGGAATCATCTTGTTTGT 58.890 33.333 0.00 0.00 39.87 2.83
183 184 8.511604 ACAAGGTATAGGAATCATCTTGTTTG 57.488 34.615 0.00 0.00 39.87 2.93
186 187 9.178758 GAAAACAAGGTATAGGAATCATCTTGT 57.821 33.333 0.00 0.00 43.16 3.16
187 188 8.624776 GGAAAACAAGGTATAGGAATCATCTTG 58.375 37.037 0.00 0.00 36.96 3.02
188 189 7.780271 GGGAAAACAAGGTATAGGAATCATCTT 59.220 37.037 0.00 0.00 0.00 2.40
189 190 7.129504 AGGGAAAACAAGGTATAGGAATCATCT 59.870 37.037 0.00 0.00 0.00 2.90
190 191 7.290813 AGGGAAAACAAGGTATAGGAATCATC 58.709 38.462 0.00 0.00 0.00 2.92
191 192 7.226059 AGGGAAAACAAGGTATAGGAATCAT 57.774 36.000 0.00 0.00 0.00 2.45
192 193 6.652205 AGGGAAAACAAGGTATAGGAATCA 57.348 37.500 0.00 0.00 0.00 2.57
193 194 9.121658 CTTTAGGGAAAACAAGGTATAGGAATC 57.878 37.037 0.00 0.00 0.00 2.52
194 195 8.842764 TCTTTAGGGAAAACAAGGTATAGGAAT 58.157 33.333 0.00 0.00 0.00 3.01
195 196 8.222138 TCTTTAGGGAAAACAAGGTATAGGAA 57.778 34.615 0.00 0.00 0.00 3.36
196 197 7.817910 TCTTTAGGGAAAACAAGGTATAGGA 57.182 36.000 0.00 0.00 0.00 2.94
197 198 7.556635 CCTTCTTTAGGGAAAACAAGGTATAGG 59.443 40.741 0.00 0.00 40.67 2.57
198 199 8.326529 TCCTTCTTTAGGGAAAACAAGGTATAG 58.673 37.037 4.98 0.00 44.86 1.31
199 200 8.222138 TCCTTCTTTAGGGAAAACAAGGTATA 57.778 34.615 4.98 0.00 44.86 1.47
200 201 7.098845 TCCTTCTTTAGGGAAAACAAGGTAT 57.901 36.000 4.98 0.00 44.86 2.73
201 202 6.518516 TCCTTCTTTAGGGAAAACAAGGTA 57.481 37.500 4.98 0.00 44.86 3.08
202 203 5.397553 TCCTTCTTTAGGGAAAACAAGGT 57.602 39.130 4.98 0.00 44.86 3.50
203 204 6.724893 TTTCCTTCTTTAGGGAAAACAAGG 57.275 37.500 4.90 0.00 45.17 3.61
228 229 4.523943 TGTGACATGGCTAAGCAGATTTTT 59.476 37.500 0.00 0.00 0.00 1.94
229 230 4.081406 TGTGACATGGCTAAGCAGATTTT 58.919 39.130 0.00 0.00 0.00 1.82
230 231 3.689347 TGTGACATGGCTAAGCAGATTT 58.311 40.909 0.00 0.00 0.00 2.17
231 232 3.054875 TCTGTGACATGGCTAAGCAGATT 60.055 43.478 0.00 0.00 0.00 2.40
232 233 2.502947 TCTGTGACATGGCTAAGCAGAT 59.497 45.455 0.00 0.00 0.00 2.90
233 234 1.901833 TCTGTGACATGGCTAAGCAGA 59.098 47.619 0.00 5.89 0.00 4.26
234 235 2.391616 TCTGTGACATGGCTAAGCAG 57.608 50.000 0.00 3.45 0.00 4.24
235 236 2.224499 TGTTCTGTGACATGGCTAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
236 237 2.426522 TGTTCTGTGACATGGCTAAGC 58.573 47.619 0.00 0.00 0.00 3.09
237 238 4.696877 TGAATGTTCTGTGACATGGCTAAG 59.303 41.667 0.00 0.00 40.03 2.18
238 239 4.455533 GTGAATGTTCTGTGACATGGCTAA 59.544 41.667 0.00 0.00 40.03 3.09
239 240 4.002982 GTGAATGTTCTGTGACATGGCTA 58.997 43.478 0.00 0.00 40.03 3.93
240 241 2.816087 GTGAATGTTCTGTGACATGGCT 59.184 45.455 0.00 0.00 40.03 4.75
241 242 2.553602 TGTGAATGTTCTGTGACATGGC 59.446 45.455 0.00 0.00 40.03 4.40
242 243 3.817084 ACTGTGAATGTTCTGTGACATGG 59.183 43.478 0.00 0.00 40.03 3.66
243 244 5.209977 CAACTGTGAATGTTCTGTGACATG 58.790 41.667 0.00 0.00 40.03 3.21
244 245 4.276678 CCAACTGTGAATGTTCTGTGACAT 59.723 41.667 0.00 0.00 41.83 3.06
245 246 3.627123 CCAACTGTGAATGTTCTGTGACA 59.373 43.478 0.00 0.00 0.00 3.58
246 247 3.627577 ACCAACTGTGAATGTTCTGTGAC 59.372 43.478 0.00 0.00 0.00 3.67
247 248 3.884895 ACCAACTGTGAATGTTCTGTGA 58.115 40.909 0.00 0.00 0.00 3.58
248 249 5.749596 TTACCAACTGTGAATGTTCTGTG 57.250 39.130 0.00 0.00 0.00 3.66
249 250 6.959639 AATTACCAACTGTGAATGTTCTGT 57.040 33.333 0.00 0.00 0.00 3.41
250 251 9.912634 ATTTAATTACCAACTGTGAATGTTCTG 57.087 29.630 0.00 0.00 0.00 3.02
323 324 9.713713 ACTAAAATTTACCGTTGCCAATTTAAT 57.286 25.926 0.00 0.00 30.39 1.40
324 325 9.543783 AACTAAAATTTACCGTTGCCAATTTAA 57.456 25.926 0.00 0.00 30.39 1.52
325 326 9.543783 AAACTAAAATTTACCGTTGCCAATTTA 57.456 25.926 0.00 0.00 30.39 1.40
326 327 8.439993 AAACTAAAATTTACCGTTGCCAATTT 57.560 26.923 0.00 0.00 31.57 1.82
327 328 9.543783 TTAAACTAAAATTTACCGTTGCCAATT 57.456 25.926 0.00 0.00 0.00 2.32
328 329 8.980610 GTTAAACTAAAATTTACCGTTGCCAAT 58.019 29.630 0.00 0.00 0.00 3.16
329 330 7.977853 TGTTAAACTAAAATTTACCGTTGCCAA 59.022 29.630 0.00 0.00 0.00 4.52
330 331 7.434602 GTGTTAAACTAAAATTTACCGTTGCCA 59.565 33.333 0.00 0.00 0.00 4.92
331 332 7.434602 TGTGTTAAACTAAAATTTACCGTTGCC 59.565 33.333 0.00 0.00 0.00 4.52
332 333 8.337741 TGTGTTAAACTAAAATTTACCGTTGC 57.662 30.769 0.00 0.00 0.00 4.17
333 334 9.505995 ACTGTGTTAAACTAAAATTTACCGTTG 57.494 29.630 0.00 0.00 0.00 4.10
334 335 9.505995 CACTGTGTTAAACTAAAATTTACCGTT 57.494 29.630 0.00 0.00 0.00 4.44
335 336 7.644945 GCACTGTGTTAAACTAAAATTTACCGT 59.355 33.333 9.86 0.00 0.00 4.83
336 337 7.644551 TGCACTGTGTTAAACTAAAATTTACCG 59.355 33.333 9.86 0.00 0.00 4.02
337 338 8.859517 TGCACTGTGTTAAACTAAAATTTACC 57.140 30.769 9.86 0.00 0.00 2.85
347 348 9.762933 AAATGAATTATTGCACTGTGTTAAACT 57.237 25.926 9.86 0.00 0.00 2.66
377 378 9.690913 TCTCTTTCATATCATTCATTTTCCACT 57.309 29.630 0.00 0.00 0.00 4.00
395 396 9.862371 GAGTATGTTACATCTTCTTCTCTTTCA 57.138 33.333 0.00 0.00 0.00 2.69
399 400 8.846211 GCTAGAGTATGTTACATCTTCTTCTCT 58.154 37.037 13.94 13.39 33.92 3.10
400 401 8.625651 TGCTAGAGTATGTTACATCTTCTTCTC 58.374 37.037 13.94 8.62 0.00 2.87
401 402 8.526667 TGCTAGAGTATGTTACATCTTCTTCT 57.473 34.615 13.94 8.60 0.00 2.85
402 403 9.587772 TTTGCTAGAGTATGTTACATCTTCTTC 57.412 33.333 13.94 9.01 0.00 2.87
403 404 9.593134 CTTTGCTAGAGTATGTTACATCTTCTT 57.407 33.333 13.94 3.21 0.00 2.52
404 405 7.708752 GCTTTGCTAGAGTATGTTACATCTTCT 59.291 37.037 0.00 8.70 0.00 2.85
405 406 7.306283 CGCTTTGCTAGAGTATGTTACATCTTC 60.306 40.741 0.00 1.08 0.00 2.87
406 407 6.477033 CGCTTTGCTAGAGTATGTTACATCTT 59.523 38.462 0.00 0.00 0.00 2.40
407 408 5.980116 CGCTTTGCTAGAGTATGTTACATCT 59.020 40.000 0.00 0.00 0.00 2.90
408 409 5.175856 CCGCTTTGCTAGAGTATGTTACATC 59.824 44.000 0.00 0.00 0.00 3.06
409 410 5.050490 CCGCTTTGCTAGAGTATGTTACAT 58.950 41.667 2.58 2.58 0.00 2.29
410 411 4.430007 CCGCTTTGCTAGAGTATGTTACA 58.570 43.478 0.00 0.00 0.00 2.41
411 412 3.802685 CCCGCTTTGCTAGAGTATGTTAC 59.197 47.826 0.00 0.00 0.00 2.50
412 413 3.702548 TCCCGCTTTGCTAGAGTATGTTA 59.297 43.478 0.00 0.00 0.00 2.41
413 414 2.500098 TCCCGCTTTGCTAGAGTATGTT 59.500 45.455 0.00 0.00 0.00 2.71
414 415 2.108168 TCCCGCTTTGCTAGAGTATGT 58.892 47.619 0.00 0.00 0.00 2.29
415 416 2.890808 TCCCGCTTTGCTAGAGTATG 57.109 50.000 0.00 0.00 0.00 2.39
416 417 2.483889 GCTTCCCGCTTTGCTAGAGTAT 60.484 50.000 0.00 0.00 35.14 2.12
417 418 1.134788 GCTTCCCGCTTTGCTAGAGTA 60.135 52.381 0.00 0.00 35.14 2.59
418 419 0.391793 GCTTCCCGCTTTGCTAGAGT 60.392 55.000 0.00 0.00 35.14 3.24
419 420 1.092345 GGCTTCCCGCTTTGCTAGAG 61.092 60.000 0.00 0.00 39.13 2.43
420 421 1.078426 GGCTTCCCGCTTTGCTAGA 60.078 57.895 0.00 0.00 39.13 2.43
421 422 3.502572 GGCTTCCCGCTTTGCTAG 58.497 61.111 0.00 0.00 39.13 3.42
431 432 0.955905 TGCACTTTTTACGGCTTCCC 59.044 50.000 0.00 0.00 0.00 3.97
432 433 2.223618 TGTTGCACTTTTTACGGCTTCC 60.224 45.455 0.00 0.00 0.00 3.46
433 434 3.073144 TGTTGCACTTTTTACGGCTTC 57.927 42.857 0.00 0.00 0.00 3.86
434 435 3.726291 ATGTTGCACTTTTTACGGCTT 57.274 38.095 0.00 0.00 0.00 4.35
435 436 3.566322 TGTATGTTGCACTTTTTACGGCT 59.434 39.130 0.00 0.00 0.00 5.52
436 437 3.891324 TGTATGTTGCACTTTTTACGGC 58.109 40.909 0.00 0.00 0.00 5.68
437 438 8.682128 ATAATTGTATGTTGCACTTTTTACGG 57.318 30.769 0.00 0.00 0.00 4.02
461 462 8.934507 TTTTCGTGTTTTTGGAAATGTCTTAT 57.065 26.923 0.00 0.00 30.55 1.73
462 463 8.758633 TTTTTCGTGTTTTTGGAAATGTCTTA 57.241 26.923 0.00 0.00 30.55 2.10
463 464 7.659652 TTTTTCGTGTTTTTGGAAATGTCTT 57.340 28.000 0.00 0.00 30.55 3.01
487 488 7.500141 ACAAAGAATGCACTACCTTGATTTTT 58.500 30.769 0.00 0.00 0.00 1.94
488 489 7.054491 ACAAAGAATGCACTACCTTGATTTT 57.946 32.000 0.00 0.00 0.00 1.82
489 490 6.655078 ACAAAGAATGCACTACCTTGATTT 57.345 33.333 0.00 0.00 0.00 2.17
490 491 7.168219 TCTACAAAGAATGCACTACCTTGATT 58.832 34.615 0.00 0.00 0.00 2.57
491 492 6.711277 TCTACAAAGAATGCACTACCTTGAT 58.289 36.000 0.00 0.00 0.00 2.57
492 493 6.109156 TCTACAAAGAATGCACTACCTTGA 57.891 37.500 0.00 0.00 0.00 3.02
493 494 6.992063 ATCTACAAAGAATGCACTACCTTG 57.008 37.500 0.00 0.00 34.73 3.61
494 495 8.079211 TCTATCTACAAAGAATGCACTACCTT 57.921 34.615 0.00 0.00 34.73 3.50
495 496 7.661536 TCTATCTACAAAGAATGCACTACCT 57.338 36.000 0.00 0.00 34.73 3.08
496 497 8.718102 TTTCTATCTACAAAGAATGCACTACC 57.282 34.615 0.00 0.00 34.73 3.18
499 500 8.734386 CCTTTTTCTATCTACAAAGAATGCACT 58.266 33.333 0.00 0.00 34.73 4.40
500 501 8.515414 ACCTTTTTCTATCTACAAAGAATGCAC 58.485 33.333 0.00 0.00 34.73 4.57
501 502 8.514594 CACCTTTTTCTATCTACAAAGAATGCA 58.485 33.333 0.00 0.00 34.73 3.96
502 503 8.515414 ACACCTTTTTCTATCTACAAAGAATGC 58.485 33.333 0.00 0.00 34.73 3.56
505 506 9.403583 ACAACACCTTTTTCTATCTACAAAGAA 57.596 29.630 0.00 0.00 34.73 2.52
506 507 8.974060 ACAACACCTTTTTCTATCTACAAAGA 57.026 30.769 0.00 0.00 35.80 2.52
517 518 9.403583 TCTACAAAGAATACAACACCTTTTTCT 57.596 29.630 0.00 0.00 0.00 2.52
535 536 9.846248 CCCATTCAACTTTTTCTATCTACAAAG 57.154 33.333 0.00 0.00 33.27 2.77
536 537 9.362151 ACCCATTCAACTTTTTCTATCTACAAA 57.638 29.630 0.00 0.00 0.00 2.83
537 538 8.792633 CACCCATTCAACTTTTTCTATCTACAA 58.207 33.333 0.00 0.00 0.00 2.41
538 539 7.942341 ACACCCATTCAACTTTTTCTATCTACA 59.058 33.333 0.00 0.00 0.00 2.74
539 540 8.237267 CACACCCATTCAACTTTTTCTATCTAC 58.763 37.037 0.00 0.00 0.00 2.59
540 541 8.160765 TCACACCCATTCAACTTTTTCTATCTA 58.839 33.333 0.00 0.00 0.00 1.98
541 542 7.004086 TCACACCCATTCAACTTTTTCTATCT 58.996 34.615 0.00 0.00 0.00 1.98
542 543 7.040409 AGTCACACCCATTCAACTTTTTCTATC 60.040 37.037 0.00 0.00 0.00 2.08
543 544 6.777580 AGTCACACCCATTCAACTTTTTCTAT 59.222 34.615 0.00 0.00 0.00 1.98
544 545 6.039270 CAGTCACACCCATTCAACTTTTTCTA 59.961 38.462 0.00 0.00 0.00 2.10
545 546 4.956075 AGTCACACCCATTCAACTTTTTCT 59.044 37.500 0.00 0.00 0.00 2.52
546 547 5.043248 CAGTCACACCCATTCAACTTTTTC 58.957 41.667 0.00 0.00 0.00 2.29
547 548 4.466015 ACAGTCACACCCATTCAACTTTTT 59.534 37.500 0.00 0.00 0.00 1.94
548 549 4.023291 ACAGTCACACCCATTCAACTTTT 58.977 39.130 0.00 0.00 0.00 2.27
549 550 3.631250 ACAGTCACACCCATTCAACTTT 58.369 40.909 0.00 0.00 0.00 2.66
550 551 3.297134 ACAGTCACACCCATTCAACTT 57.703 42.857 0.00 0.00 0.00 2.66
551 552 3.244561 CCTACAGTCACACCCATTCAACT 60.245 47.826 0.00 0.00 0.00 3.16
552 553 3.074412 CCTACAGTCACACCCATTCAAC 58.926 50.000 0.00 0.00 0.00 3.18
553 554 2.708861 ACCTACAGTCACACCCATTCAA 59.291 45.455 0.00 0.00 0.00 2.69
554 555 2.334977 ACCTACAGTCACACCCATTCA 58.665 47.619 0.00 0.00 0.00 2.57
555 556 3.259876 TGTACCTACAGTCACACCCATTC 59.740 47.826 0.00 0.00 0.00 2.67
556 557 3.244582 TGTACCTACAGTCACACCCATT 58.755 45.455 0.00 0.00 0.00 3.16
557 558 2.832129 CTGTACCTACAGTCACACCCAT 59.168 50.000 4.53 0.00 46.51 4.00
558 559 2.244695 CTGTACCTACAGTCACACCCA 58.755 52.381 4.53 0.00 46.51 4.51
568 569 6.317663 TCTGGTCATACTACTGTACCTACA 57.682 41.667 0.00 0.00 34.56 2.74
569 570 6.039159 GGTTCTGGTCATACTACTGTACCTAC 59.961 46.154 0.00 0.00 0.00 3.18
570 571 6.125029 GGTTCTGGTCATACTACTGTACCTA 58.875 44.000 0.00 0.00 0.00 3.08
571 572 4.954826 GGTTCTGGTCATACTACTGTACCT 59.045 45.833 0.00 0.00 0.00 3.08
572 573 4.708421 TGGTTCTGGTCATACTACTGTACC 59.292 45.833 0.00 0.00 0.00 3.34
573 574 5.909621 TGGTTCTGGTCATACTACTGTAC 57.090 43.478 0.00 0.00 0.00 2.90
574 575 5.362717 CCATGGTTCTGGTCATACTACTGTA 59.637 44.000 2.57 0.00 0.00 2.74
575 576 4.162320 CCATGGTTCTGGTCATACTACTGT 59.838 45.833 2.57 0.00 0.00 3.55
576 577 4.443457 CCCATGGTTCTGGTCATACTACTG 60.443 50.000 11.73 0.00 34.23 2.74
577 578 3.711704 CCCATGGTTCTGGTCATACTACT 59.288 47.826 11.73 0.00 34.23 2.57
578 579 3.744530 GCCCATGGTTCTGGTCATACTAC 60.745 52.174 11.73 0.00 34.23 2.73
579 580 2.438021 GCCCATGGTTCTGGTCATACTA 59.562 50.000 11.73 0.00 34.23 1.82
580 581 1.212935 GCCCATGGTTCTGGTCATACT 59.787 52.381 11.73 0.00 34.23 2.12
581 582 1.680338 GCCCATGGTTCTGGTCATAC 58.320 55.000 11.73 0.00 34.23 2.39
582 583 0.180171 CGCCCATGGTTCTGGTCATA 59.820 55.000 11.73 0.00 34.23 2.15
583 584 1.077501 CGCCCATGGTTCTGGTCAT 60.078 57.895 11.73 0.00 34.23 3.06
584 585 1.561769 ATCGCCCATGGTTCTGGTCA 61.562 55.000 11.73 0.00 34.23 4.02
585 586 1.097547 CATCGCCCATGGTTCTGGTC 61.098 60.000 11.73 0.00 34.23 4.02
586 587 1.077501 CATCGCCCATGGTTCTGGT 60.078 57.895 11.73 0.00 34.23 4.00
587 588 0.394216 TTCATCGCCCATGGTTCTGG 60.394 55.000 11.73 0.00 35.95 3.86
588 589 1.133025 GTTTCATCGCCCATGGTTCTG 59.867 52.381 11.73 2.83 32.64 3.02
589 590 1.004745 AGTTTCATCGCCCATGGTTCT 59.995 47.619 11.73 0.00 32.64 3.01
590 591 1.463674 AGTTTCATCGCCCATGGTTC 58.536 50.000 11.73 0.73 32.64 3.62
591 592 2.290641 TGTAGTTTCATCGCCCATGGTT 60.291 45.455 11.73 0.00 32.64 3.67
592 593 1.280710 TGTAGTTTCATCGCCCATGGT 59.719 47.619 11.73 0.00 32.64 3.55
593 594 1.942657 CTGTAGTTTCATCGCCCATGG 59.057 52.381 4.14 4.14 32.64 3.66
594 595 1.942657 CCTGTAGTTTCATCGCCCATG 59.057 52.381 0.00 0.00 0.00 3.66
595 596 1.559682 ACCTGTAGTTTCATCGCCCAT 59.440 47.619 0.00 0.00 0.00 4.00
596 597 0.981183 ACCTGTAGTTTCATCGCCCA 59.019 50.000 0.00 0.00 0.00 5.36
597 598 2.109425 AACCTGTAGTTTCATCGCCC 57.891 50.000 0.00 0.00 33.89 6.13
598 599 3.617263 CAGTAACCTGTAGTTTCATCGCC 59.383 47.826 0.00 0.00 40.05 5.54
599 600 4.842139 CAGTAACCTGTAGTTTCATCGC 57.158 45.455 0.00 0.00 40.05 4.58
611 612 2.567169 TGGTCTCATGGACAGTAACCTG 59.433 50.000 13.95 0.00 46.16 4.00
612 613 2.834549 CTGGTCTCATGGACAGTAACCT 59.165 50.000 13.95 0.00 46.16 3.50
613 614 2.567615 ACTGGTCTCATGGACAGTAACC 59.432 50.000 13.95 1.64 46.16 2.85
614 615 3.963428 ACTGGTCTCATGGACAGTAAC 57.037 47.619 13.95 0.73 46.16 2.50
615 616 4.673968 AGTACTGGTCTCATGGACAGTAA 58.326 43.478 15.90 4.49 46.16 2.24
616 617 4.317530 AGTACTGGTCTCATGGACAGTA 57.682 45.455 13.95 13.16 46.16 2.74
617 618 3.176924 AGTACTGGTCTCATGGACAGT 57.823 47.619 13.95 13.92 46.16 3.55
618 619 3.854666 CAAGTACTGGTCTCATGGACAG 58.145 50.000 13.95 9.81 46.16 3.51
619 620 2.028112 GCAAGTACTGGTCTCATGGACA 60.028 50.000 13.95 0.00 46.16 4.02
620 621 2.622436 GCAAGTACTGGTCTCATGGAC 58.378 52.381 0.00 5.94 43.79 4.02
621 622 1.555075 GGCAAGTACTGGTCTCATGGA 59.445 52.381 0.00 0.00 0.00 3.41
622 623 1.278985 TGGCAAGTACTGGTCTCATGG 59.721 52.381 2.97 0.00 0.00 3.66
623 624 2.768253 TGGCAAGTACTGGTCTCATG 57.232 50.000 2.97 0.00 0.00 3.07
624 625 4.290093 TCTATGGCAAGTACTGGTCTCAT 58.710 43.478 2.97 5.90 0.00 2.90
625 626 3.708451 TCTATGGCAAGTACTGGTCTCA 58.292 45.455 2.97 0.00 0.00 3.27
626 627 4.737855 TTCTATGGCAAGTACTGGTCTC 57.262 45.455 2.97 0.00 0.00 3.36
627 628 5.700402 ATTTCTATGGCAAGTACTGGTCT 57.300 39.130 2.97 0.00 0.00 3.85
628 629 7.934120 AGATTATTTCTATGGCAAGTACTGGTC 59.066 37.037 0.00 0.00 30.96 4.02
629 630 7.806180 AGATTATTTCTATGGCAAGTACTGGT 58.194 34.615 0.00 0.00 30.96 4.00
630 631 8.682936 AAGATTATTTCTATGGCAAGTACTGG 57.317 34.615 0.00 0.00 33.05 4.00
715 716 8.957466 GGTGCTGTCTATATGTATCACTATGTA 58.043 37.037 0.00 0.00 0.00 2.29
716 717 7.671819 AGGTGCTGTCTATATGTATCACTATGT 59.328 37.037 0.00 0.00 0.00 2.29
717 718 8.060931 AGGTGCTGTCTATATGTATCACTATG 57.939 38.462 0.00 0.00 0.00 2.23
718 719 8.112822 AGAGGTGCTGTCTATATGTATCACTAT 58.887 37.037 0.00 0.00 0.00 2.12
719 720 7.462590 AGAGGTGCTGTCTATATGTATCACTA 58.537 38.462 0.00 0.00 0.00 2.74
720 721 6.310941 AGAGGTGCTGTCTATATGTATCACT 58.689 40.000 0.00 0.00 0.00 3.41
721 722 6.582677 AGAGGTGCTGTCTATATGTATCAC 57.417 41.667 0.00 0.00 0.00 3.06
722 723 7.603180 AAAGAGGTGCTGTCTATATGTATCA 57.397 36.000 0.00 0.00 0.00 2.15
723 724 8.798402 ACTAAAGAGGTGCTGTCTATATGTATC 58.202 37.037 0.00 0.00 0.00 2.24
724 725 8.713708 ACTAAAGAGGTGCTGTCTATATGTAT 57.286 34.615 0.00 0.00 0.00 2.29
725 726 7.999545 AGACTAAAGAGGTGCTGTCTATATGTA 59.000 37.037 0.00 0.00 33.67 2.29
726 727 6.836527 AGACTAAAGAGGTGCTGTCTATATGT 59.163 38.462 0.00 0.00 33.67 2.29
727 728 7.013750 TCAGACTAAAGAGGTGCTGTCTATATG 59.986 40.741 0.00 0.00 34.03 1.78
728 729 7.063593 TCAGACTAAAGAGGTGCTGTCTATAT 58.936 38.462 0.00 0.00 34.03 0.86
729 730 6.424032 TCAGACTAAAGAGGTGCTGTCTATA 58.576 40.000 0.00 0.00 34.03 1.31
730 731 5.265191 TCAGACTAAAGAGGTGCTGTCTAT 58.735 41.667 0.00 0.00 34.03 1.98
731 732 4.663334 TCAGACTAAAGAGGTGCTGTCTA 58.337 43.478 0.00 0.00 34.03 2.59
732 733 3.501349 TCAGACTAAAGAGGTGCTGTCT 58.499 45.455 0.00 0.00 35.48 3.41
733 734 3.944055 TCAGACTAAAGAGGTGCTGTC 57.056 47.619 0.00 0.00 0.00 3.51
734 735 3.119316 CGATCAGACTAAAGAGGTGCTGT 60.119 47.826 0.00 0.00 0.00 4.40
735 736 3.119316 ACGATCAGACTAAAGAGGTGCTG 60.119 47.826 0.00 0.00 0.00 4.41
736 737 3.093057 ACGATCAGACTAAAGAGGTGCT 58.907 45.455 0.00 0.00 0.00 4.40
737 738 3.512033 ACGATCAGACTAAAGAGGTGC 57.488 47.619 0.00 0.00 0.00 5.01
738 739 4.425520 GGAACGATCAGACTAAAGAGGTG 58.574 47.826 0.00 0.00 0.00 4.00
739 740 3.447944 GGGAACGATCAGACTAAAGAGGT 59.552 47.826 0.00 0.00 0.00 3.85
740 741 3.702045 AGGGAACGATCAGACTAAAGAGG 59.298 47.826 0.00 0.00 0.00 3.69
741 742 4.496673 CGAGGGAACGATCAGACTAAAGAG 60.497 50.000 0.00 0.00 35.09 2.85
742 743 3.377485 CGAGGGAACGATCAGACTAAAGA 59.623 47.826 0.00 0.00 35.09 2.52
743 744 3.377485 TCGAGGGAACGATCAGACTAAAG 59.623 47.826 0.00 0.00 37.37 1.85
744 745 3.349927 TCGAGGGAACGATCAGACTAAA 58.650 45.455 0.00 0.00 37.37 1.85
745 746 2.943690 CTCGAGGGAACGATCAGACTAA 59.056 50.000 3.91 0.00 41.39 2.24
746 747 2.093075 ACTCGAGGGAACGATCAGACTA 60.093 50.000 18.41 0.00 41.39 2.59
747 748 1.340211 ACTCGAGGGAACGATCAGACT 60.340 52.381 18.41 0.00 41.39 3.24
748 749 1.096416 ACTCGAGGGAACGATCAGAC 58.904 55.000 18.41 0.00 41.39 3.51
749 750 1.095600 CACTCGAGGGAACGATCAGA 58.904 55.000 18.41 0.00 41.39 3.27
750 751 1.095600 TCACTCGAGGGAACGATCAG 58.904 55.000 16.79 0.00 41.39 2.90
751 752 1.676529 GATCACTCGAGGGAACGATCA 59.323 52.381 23.50 0.00 41.39 2.92
752 753 2.409152 GATCACTCGAGGGAACGATC 57.591 55.000 23.50 11.05 41.39 3.69
767 768 0.322187 TGACGAGGAGTGACCGATCA 60.322 55.000 0.00 0.00 44.74 2.92
768 769 0.809385 TTGACGAGGAGTGACCGATC 59.191 55.000 0.00 0.00 44.74 3.69
769 770 0.526662 GTTGACGAGGAGTGACCGAT 59.473 55.000 0.00 0.00 44.74 4.18
770 771 1.521450 GGTTGACGAGGAGTGACCGA 61.521 60.000 0.00 0.00 44.74 4.69
771 772 1.080705 GGTTGACGAGGAGTGACCG 60.081 63.158 0.00 0.00 44.74 4.79
772 773 0.680061 AAGGTTGACGAGGAGTGACC 59.320 55.000 0.00 0.00 36.45 4.02
773 774 1.068741 ACAAGGTTGACGAGGAGTGAC 59.931 52.381 0.00 0.00 0.00 3.67
774 775 1.410004 ACAAGGTTGACGAGGAGTGA 58.590 50.000 0.00 0.00 0.00 3.41
775 776 2.135933 GAACAAGGTTGACGAGGAGTG 58.864 52.381 0.00 0.00 0.00 3.51
776 777 2.040178 AGAACAAGGTTGACGAGGAGT 58.960 47.619 0.00 0.00 0.00 3.85
777 778 2.035961 TCAGAACAAGGTTGACGAGGAG 59.964 50.000 0.00 0.00 0.00 3.69
778 779 2.035961 CTCAGAACAAGGTTGACGAGGA 59.964 50.000 0.00 0.00 0.00 3.71
779 780 2.224066 ACTCAGAACAAGGTTGACGAGG 60.224 50.000 0.00 0.00 0.00 4.63
780 781 2.797156 CACTCAGAACAAGGTTGACGAG 59.203 50.000 0.00 0.00 0.00 4.18
781 782 2.429250 TCACTCAGAACAAGGTTGACGA 59.571 45.455 0.00 0.00 0.00 4.20
782 783 2.821546 TCACTCAGAACAAGGTTGACG 58.178 47.619 0.00 0.00 0.00 4.35
783 784 5.514279 CAAATCACTCAGAACAAGGTTGAC 58.486 41.667 0.00 0.00 0.00 3.18
784 785 4.036734 GCAAATCACTCAGAACAAGGTTGA 59.963 41.667 0.00 0.00 0.00 3.18
785 786 4.202040 TGCAAATCACTCAGAACAAGGTTG 60.202 41.667 0.00 0.00 0.00 3.77
786 787 3.953612 TGCAAATCACTCAGAACAAGGTT 59.046 39.130 0.00 0.00 0.00 3.50
787 788 3.554934 TGCAAATCACTCAGAACAAGGT 58.445 40.909 0.00 0.00 0.00 3.50
788 789 4.543692 CTTGCAAATCACTCAGAACAAGG 58.456 43.478 0.00 0.00 31.81 3.61
789 790 4.276678 TCCTTGCAAATCACTCAGAACAAG 59.723 41.667 0.00 0.00 34.48 3.16
790 791 4.206375 TCCTTGCAAATCACTCAGAACAA 58.794 39.130 0.00 0.00 0.00 2.83
791 792 3.817084 CTCCTTGCAAATCACTCAGAACA 59.183 43.478 0.00 0.00 0.00 3.18
792 793 3.817647 ACTCCTTGCAAATCACTCAGAAC 59.182 43.478 0.00 0.00 0.00 3.01
793 794 4.090761 ACTCCTTGCAAATCACTCAGAA 57.909 40.909 0.00 0.00 0.00 3.02
794 795 3.777106 ACTCCTTGCAAATCACTCAGA 57.223 42.857 0.00 0.00 0.00 3.27
795 796 4.543692 CAAACTCCTTGCAAATCACTCAG 58.456 43.478 0.00 0.00 0.00 3.35
796 797 4.572985 CAAACTCCTTGCAAATCACTCA 57.427 40.909 0.00 0.00 0.00 3.41
927 929 7.915293 TCCTAAAACAATCTTATTCGAGCAA 57.085 32.000 0.00 0.00 0.00 3.91
1100 1102 6.017275 AGGTATAACAGTCGACTTTCCTATCG 60.017 42.308 17.26 4.41 39.72 2.92
1313 1315 2.025510 AGGGATTTGAGCCAGAAGAAGG 60.026 50.000 0.00 0.00 0.00 3.46
1393 1395 2.201732 CATGGACATAAACGAGGTCGG 58.798 52.381 4.13 0.00 39.86 4.79
1508 1510 1.272704 GGAGAAAGCTGGTTGGGGAAT 60.273 52.381 0.00 0.00 0.00 3.01
1640 1642 6.831868 TCTTTTTAGCTTCAAAACTACAGGGT 59.168 34.615 0.00 0.00 0.00 4.34
1668 1670 4.103103 CGACACGGAGCTCGCTGA 62.103 66.667 14.49 0.00 43.89 4.26
1766 1768 3.953444 CTCGCTCAGTTCGCTCGCA 62.953 63.158 0.00 0.00 0.00 5.10
1959 1961 1.285373 AGTAGTCCCATCACTCTCGGT 59.715 52.381 0.00 0.00 0.00 4.69
2049 2052 2.049435 AAAAAGGGGGAGCAAAGCG 58.951 52.632 0.00 0.00 0.00 4.68
2139 2142 2.288518 GGTACCATTCTGATCGCCTCTC 60.289 54.545 7.15 0.00 0.00 3.20
2233 2236 4.720649 CCACTCTTCTTTGATCCGTCTA 57.279 45.455 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.