Multiple sequence alignment - TraesCS7A01G395900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G395900 chr7A 100.000 4425 0 0 1 4425 574132208 574127784 0.000000e+00 8172.0
1 TraesCS7A01G395900 chr7A 84.500 200 27 4 1 198 417570739 417570936 1.260000e-45 195.0
2 TraesCS7A01G395900 chr7A 96.970 33 1 0 766 798 27235365 27235333 6.180000e-04 56.5
3 TraesCS7A01G395900 chr7B 91.976 1807 71 10 882 2635 535263444 535261659 0.000000e+00 2466.0
4 TraesCS7A01G395900 chr7B 92.744 1392 55 9 2878 4247 535261540 535260173 0.000000e+00 1969.0
5 TraesCS7A01G395900 chr7B 81.387 865 111 30 1 832 535264715 535263868 0.000000e+00 660.0
6 TraesCS7A01G395900 chr7B 78.858 473 90 9 6 475 488908499 488908034 1.200000e-80 311.0
7 TraesCS7A01G395900 chr7B 93.889 180 11 0 4246 4425 535260069 535259890 5.640000e-69 272.0
8 TraesCS7A01G395900 chr7B 93.293 164 10 1 2626 2788 535261702 535261539 1.590000e-59 241.0
9 TraesCS7A01G395900 chr7B 95.402 87 4 0 2800 2886 153326843 153326929 5.970000e-29 139.0
10 TraesCS7A01G395900 chr7D 89.278 1744 105 37 970 2635 506726574 506724835 0.000000e+00 2109.0
11 TraesCS7A01G395900 chr7D 94.070 742 37 5 2878 3615 506724716 506723978 0.000000e+00 1120.0
12 TraesCS7A01G395900 chr7D 93.902 164 9 1 2626 2788 506724878 506724715 3.420000e-61 246.0
13 TraesCS7A01G395900 chr7D 91.129 124 11 0 3680 3803 506723826 506723703 7.610000e-38 169.0
14 TraesCS7A01G395900 chr7D 93.182 88 5 1 2800 2887 131468451 131468365 1.290000e-25 128.0
15 TraesCS7A01G395900 chr5D 76.147 545 107 18 44 576 405247777 405247244 9.440000e-67 265.0
16 TraesCS7A01G395900 chr5D 90.909 99 8 1 2785 2883 264494430 264494527 9.990000e-27 132.0
17 TraesCS7A01G395900 chr3A 78.744 414 65 17 180 580 68928261 68927858 5.680000e-64 255.0
18 TraesCS7A01G395900 chr4B 74.271 583 120 24 3 571 356948750 356949316 7.450000e-53 219.0
19 TraesCS7A01G395900 chr2D 85.714 147 17 4 66 210 520735828 520735972 7.670000e-33 152.0
20 TraesCS7A01G395900 chr3D 95.506 89 4 0 2797 2885 326696952 326697040 4.610000e-30 143.0
21 TraesCS7A01G395900 chr5B 94.318 88 5 0 2798 2885 163260733 163260646 7.720000e-28 135.0
22 TraesCS7A01G395900 chr6D 93.333 90 6 0 2797 2886 122992103 122992192 2.780000e-27 134.0
23 TraesCS7A01G395900 chr4A 91.753 97 7 1 2793 2889 565436116 565436211 2.780000e-27 134.0
24 TraesCS7A01G395900 chr6A 94.186 86 5 0 2800 2885 548408145 548408060 9.990000e-27 132.0
25 TraesCS7A01G395900 chr1D 88.350 103 10 2 2790 2891 198901814 198901713 6.010000e-24 122.0
26 TraesCS7A01G395900 chr1A 85.526 76 11 0 648 723 572846231 572846156 3.670000e-11 80.5
27 TraesCS7A01G395900 chr2B 100.000 29 0 0 766 794 152856190 152856218 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G395900 chr7A 574127784 574132208 4424 True 8172.0 8172 100.00000 1 4425 1 chr7A.!!$R2 4424
1 TraesCS7A01G395900 chr7B 535259890 535264715 4825 True 1121.6 2466 90.65780 1 4425 5 chr7B.!!$R2 4424
2 TraesCS7A01G395900 chr7D 506723703 506726574 2871 True 911.0 2109 92.09475 970 3803 4 chr7D.!!$R2 2833
3 TraesCS7A01G395900 chr5D 405247244 405247777 533 True 265.0 265 76.14700 44 576 1 chr5D.!!$R1 532
4 TraesCS7A01G395900 chr4B 356948750 356949316 566 False 219.0 219 74.27100 3 571 1 chr4B.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 726 0.106918 TTCAGGCCTTTCGGTGTTGT 60.107 50.0 0.00 0.00 0.00 3.32 F
751 785 0.178301 TGTACGTGGCCACTTTGTCA 59.822 50.0 32.28 19.89 0.00 3.58 F
773 807 0.320421 CCAGGCCGTTTTCTCGAAGA 60.320 55.0 0.00 0.00 0.00 2.87 F
870 904 0.464036 GGGATGAGTGGATGTGCGTA 59.536 55.0 0.00 0.00 0.00 4.42 F
977 1385 0.472471 ACAACCAGATCAACGGGTGT 59.528 50.0 12.38 12.38 45.71 4.16 F
2684 3185 0.592637 TGCTGCATTTCCTTGTGACG 59.407 50.0 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1997 1.822506 ATCCGTCTGACAGTCGAAGA 58.177 50.000 21.21 12.24 0.00 2.87 R
1667 2127 2.558359 CAAAGACCAATCCGCCTTCTTT 59.442 45.455 0.00 0.00 37.06 2.52 R
2718 3220 2.874701 ACTCAGACAGCACAATCAACAC 59.125 45.455 0.00 0.00 0.00 3.32 R
2855 3357 2.675844 CCGATCCAAAATAAGTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10 R
2856 3358 2.933906 TCCGATCCAAAATAAGTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19 R
4064 4678 1.478622 GCGACGATGAAGCTGCTCTC 61.479 60.000 1.00 3.80 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.360999 TCTCATGGTGAATGTTCGTAGAGAT 59.639 40.000 0.00 0.00 37.56 2.75
38 39 9.477484 GGTGAATGTTCGTAGAGATTATATGTT 57.523 33.333 0.00 0.00 38.43 2.71
64 65 4.528206 GTGGAAAGGAATGGATTCTTGGTT 59.472 41.667 0.00 0.00 37.00 3.67
85 86 0.959867 TGGTTGCACCGATCACATGG 60.960 55.000 0.00 0.00 42.58 3.66
105 106 0.165944 CCGGCGACAAAGACATGTTC 59.834 55.000 9.30 0.00 32.57 3.18
127 128 3.127548 CCGTGAGCTTGCTAACAATGATT 59.872 43.478 10.39 0.00 34.61 2.57
136 137 2.477863 GCTAACAATGATTGTCCACGCC 60.478 50.000 11.70 0.00 44.59 5.68
166 167 6.049790 GTGACTTTTAGAGACAACTCCAAGT 58.950 40.000 0.00 0.00 43.53 3.16
167 168 7.147794 TGTGACTTTTAGAGACAACTCCAAGTA 60.148 37.037 0.00 0.00 43.53 2.24
171 172 7.494952 ACTTTTAGAGACAACTCCAAGTACAAC 59.505 37.037 0.00 0.00 43.53 3.32
175 176 1.937899 ACAACTCCAAGTACAACGTGC 59.062 47.619 0.00 0.00 0.00 5.34
176 177 1.937223 CAACTCCAAGTACAACGTGCA 59.063 47.619 0.00 0.00 0.00 4.57
216 217 4.869297 GGCATATCACATGATAGCTCACTC 59.131 45.833 0.00 0.00 40.04 3.51
222 223 7.876936 ATCACATGATAGCTCACTCAAAAAT 57.123 32.000 0.00 0.00 33.22 1.82
223 224 7.080353 TCACATGATAGCTCACTCAAAAATG 57.920 36.000 0.00 0.00 33.22 2.32
224 225 6.656270 TCACATGATAGCTCACTCAAAAATGT 59.344 34.615 0.00 0.00 33.22 2.71
226 227 8.453320 CACATGATAGCTCACTCAAAAATGTTA 58.547 33.333 0.00 0.00 33.22 2.41
227 228 8.454106 ACATGATAGCTCACTCAAAAATGTTAC 58.546 33.333 0.00 0.00 33.22 2.50
228 229 7.977789 TGATAGCTCACTCAAAAATGTTACA 57.022 32.000 0.00 0.00 0.00 2.41
229 230 8.565896 TGATAGCTCACTCAAAAATGTTACAT 57.434 30.769 0.00 0.00 0.00 2.29
230 231 9.013229 TGATAGCTCACTCAAAAATGTTACATT 57.987 29.630 4.56 4.56 0.00 2.71
231 232 9.282247 GATAGCTCACTCAAAAATGTTACATTG 57.718 33.333 11.60 1.07 0.00 2.82
232 233 7.042797 AGCTCACTCAAAAATGTTACATTGT 57.957 32.000 11.60 2.78 0.00 2.71
233 234 7.141363 AGCTCACTCAAAAATGTTACATTGTC 58.859 34.615 11.60 0.00 0.00 3.18
278 281 9.698617 CTACTTTTTGTATATAAACTTGCCGAC 57.301 33.333 0.00 0.00 0.00 4.79
360 364 2.830772 ATGGTTTTCATCGATGTGCG 57.169 45.000 24.09 0.00 42.69 5.34
373 377 2.398498 GATGTGCGCGTAGAGATGATT 58.602 47.619 8.43 0.00 0.00 2.57
426 431 6.299141 AGAAACCTCACACATGTCTTATTGT 58.701 36.000 0.00 0.00 0.00 2.71
475 480 8.210946 TGATATAGAAAACTAGGACATGTTGGG 58.789 37.037 0.00 0.00 0.00 4.12
482 494 0.251341 AGGACATGTTGGGACCTTGC 60.251 55.000 0.00 0.00 0.00 4.01
483 495 0.539438 GGACATGTTGGGACCTTGCA 60.539 55.000 0.00 0.00 0.00 4.08
489 501 4.531732 ACATGTTGGGACCTTGCAAATAAT 59.468 37.500 0.00 0.00 0.00 1.28
501 513 9.305925 GACCTTGCAAATAATCTAATCAAAAGG 57.694 33.333 0.00 0.00 36.27 3.11
582 594 3.883830 TTCAAGCAGAAAAAGTTGCCA 57.116 38.095 0.00 0.00 41.17 4.92
583 595 3.883830 TCAAGCAGAAAAAGTTGCCAA 57.116 38.095 0.00 0.00 41.17 4.52
586 598 4.121317 CAAGCAGAAAAAGTTGCCAATGA 58.879 39.130 0.00 0.00 41.17 2.57
616 628 2.502142 TGCTACGAGGAGACCACTTA 57.498 50.000 0.00 0.00 0.00 2.24
633 655 8.847196 AGACCACTTAAACTAATCTTTTTGGTC 58.153 33.333 0.00 0.00 39.63 4.02
651 685 3.073209 TGGTCCAAATGCTTACACTGGTA 59.927 43.478 0.00 0.00 34.86 3.25
655 689 3.370978 CCAAATGCTTACACTGGTACTCG 59.629 47.826 0.00 0.00 30.60 4.18
660 694 3.000727 GCTTACACTGGTACTCGCATTT 58.999 45.455 0.00 0.00 0.00 2.32
661 695 3.435671 GCTTACACTGGTACTCGCATTTT 59.564 43.478 0.00 0.00 0.00 1.82
662 696 4.435651 GCTTACACTGGTACTCGCATTTTC 60.436 45.833 0.00 0.00 0.00 2.29
674 708 5.723295 ACTCGCATTTTCCTGCATTTATTT 58.277 33.333 0.00 0.00 42.40 1.40
677 711 5.806502 TCGCATTTTCCTGCATTTATTTCAG 59.193 36.000 0.00 0.00 42.40 3.02
679 713 5.220719 GCATTTTCCTGCATTTATTTCAGGC 60.221 40.000 2.80 0.00 45.25 4.85
687 721 3.119137 GCATTTATTTCAGGCCTTTCGGT 60.119 43.478 0.00 0.00 0.00 4.69
690 724 1.995376 ATTTCAGGCCTTTCGGTGTT 58.005 45.000 0.00 0.00 0.00 3.32
691 725 1.028905 TTTCAGGCCTTTCGGTGTTG 58.971 50.000 0.00 0.00 0.00 3.33
692 726 0.106918 TTCAGGCCTTTCGGTGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
693 727 0.817634 TCAGGCCTTTCGGTGTTGTG 60.818 55.000 0.00 0.00 0.00 3.33
694 728 2.193536 AGGCCTTTCGGTGTTGTGC 61.194 57.895 0.00 0.00 0.00 4.57
695 729 2.051345 GCCTTTCGGTGTTGTGCG 60.051 61.111 0.00 0.00 0.00 5.34
696 730 2.830285 GCCTTTCGGTGTTGTGCGT 61.830 57.895 0.00 0.00 0.00 5.24
697 731 1.725066 CCTTTCGGTGTTGTGCGTT 59.275 52.632 0.00 0.00 0.00 4.84
699 733 1.331138 CCTTTCGGTGTTGTGCGTTTA 59.669 47.619 0.00 0.00 0.00 2.01
701 735 3.549221 CCTTTCGGTGTTGTGCGTTTAAT 60.549 43.478 0.00 0.00 0.00 1.40
702 736 2.672188 TCGGTGTTGTGCGTTTAATG 57.328 45.000 0.00 0.00 0.00 1.90
703 737 1.264557 TCGGTGTTGTGCGTTTAATGG 59.735 47.619 0.00 0.00 0.00 3.16
704 738 1.664588 CGGTGTTGTGCGTTTAATGGG 60.665 52.381 0.00 0.00 0.00 4.00
705 739 1.609555 GGTGTTGTGCGTTTAATGGGA 59.390 47.619 0.00 0.00 0.00 4.37
706 740 2.351350 GGTGTTGTGCGTTTAATGGGAG 60.351 50.000 0.00 0.00 0.00 4.30
716 750 3.368116 CGTTTAATGGGAGGAGACGTTCT 60.368 47.826 0.00 0.00 0.00 3.01
736 770 5.839262 TCTCGTTGATCACAAATGTGTAC 57.161 39.130 12.87 8.95 45.76 2.90
742 776 1.231221 TCACAAATGTGTACGTGGCC 58.769 50.000 12.87 0.00 45.76 5.36
747 781 1.975660 AATGTGTACGTGGCCACTTT 58.024 45.000 32.28 21.38 32.76 2.66
751 785 0.178301 TGTACGTGGCCACTTTGTCA 59.822 50.000 32.28 19.89 0.00 3.58
756 790 1.880221 CGTGGCCACTTTGTCATACCA 60.880 52.381 32.28 0.00 0.00 3.25
758 792 1.271871 TGGCCACTTTGTCATACCAGG 60.272 52.381 0.00 0.00 0.00 4.45
759 793 0.811281 GCCACTTTGTCATACCAGGC 59.189 55.000 0.00 0.00 0.00 4.85
761 795 1.086696 CACTTTGTCATACCAGGCCG 58.913 55.000 0.00 0.00 0.00 6.13
762 796 0.690762 ACTTTGTCATACCAGGCCGT 59.309 50.000 0.00 0.00 0.00 5.68
769 803 1.006832 CATACCAGGCCGTTTTCTCG 58.993 55.000 0.00 0.00 0.00 4.04
770 804 0.899720 ATACCAGGCCGTTTTCTCGA 59.100 50.000 0.00 0.00 0.00 4.04
773 807 0.320421 CCAGGCCGTTTTCTCGAAGA 60.320 55.000 0.00 0.00 0.00 2.87
780 814 2.932614 CCGTTTTCTCGAAGATGCTCAT 59.067 45.455 0.00 0.00 33.89 2.90
785 819 3.229697 TCTCGAAGATGCTCATAGGGA 57.770 47.619 0.00 0.00 33.89 4.20
788 822 5.514169 TCTCGAAGATGCTCATAGGGATAT 58.486 41.667 0.00 0.00 33.89 1.63
790 824 5.264395 TCGAAGATGCTCATAGGGATATGA 58.736 41.667 0.00 0.00 35.40 2.15
795 829 8.564364 AAGATGCTCATAGGGATATGATGTAT 57.436 34.615 0.00 0.27 36.06 2.29
796 830 7.964624 AGATGCTCATAGGGATATGATGTATG 58.035 38.462 0.00 0.00 36.06 2.39
800 834 9.881773 TGCTCATAGGGATATGATGTATGTATA 57.118 33.333 0.00 0.00 36.06 1.47
807 841 8.486210 AGGGATATGATGTATGTATATGCGTTT 58.514 33.333 0.00 0.00 0.00 3.60
837 871 9.639636 CTTTATATAGAGATAGATGTACGTGCG 57.360 37.037 0.00 0.00 0.00 5.34
839 873 9.807649 TTATATAGAGATAGATGTACGTGCGTA 57.192 33.333 0.00 0.00 0.00 4.42
840 874 8.890124 ATATAGAGATAGATGTACGTGCGTAT 57.110 34.615 7.72 0.00 32.82 3.06
841 875 5.284428 AGAGATAGATGTACGTGCGTATG 57.716 43.478 7.72 0.00 32.82 2.39
842 876 4.755629 AGAGATAGATGTACGTGCGTATGT 59.244 41.667 7.72 3.27 32.82 2.29
843 877 5.238868 AGAGATAGATGTACGTGCGTATGTT 59.761 40.000 3.00 0.00 32.82 2.71
844 878 5.828747 AGATAGATGTACGTGCGTATGTTT 58.171 37.500 3.00 0.00 32.82 2.83
867 901 4.623932 TTATAGGGATGAGTGGATGTGC 57.376 45.455 0.00 0.00 0.00 4.57
868 902 0.752658 TAGGGATGAGTGGATGTGCG 59.247 55.000 0.00 0.00 0.00 5.34
869 903 1.221840 GGGATGAGTGGATGTGCGT 59.778 57.895 0.00 0.00 0.00 5.24
870 904 0.464036 GGGATGAGTGGATGTGCGTA 59.536 55.000 0.00 0.00 0.00 4.42
871 905 1.070758 GGGATGAGTGGATGTGCGTAT 59.929 52.381 0.00 0.00 0.00 3.06
872 906 2.138320 GGATGAGTGGATGTGCGTATG 58.862 52.381 0.00 0.00 0.00 2.39
874 908 3.243737 GGATGAGTGGATGTGCGTATGTA 60.244 47.826 0.00 0.00 0.00 2.29
876 910 4.400529 TGAGTGGATGTGCGTATGTATT 57.599 40.909 0.00 0.00 0.00 1.89
877 911 4.119136 TGAGTGGATGTGCGTATGTATTG 58.881 43.478 0.00 0.00 0.00 1.90
878 912 3.466836 AGTGGATGTGCGTATGTATTGG 58.533 45.455 0.00 0.00 0.00 3.16
879 913 2.548057 GTGGATGTGCGTATGTATTGGG 59.452 50.000 0.00 0.00 0.00 4.12
880 914 2.171659 TGGATGTGCGTATGTATTGGGT 59.828 45.455 0.00 0.00 0.00 4.51
919 1327 9.689976 AGATGATTTTTATGAGACGACTGATAG 57.310 33.333 0.00 0.00 0.00 2.08
942 1350 2.096248 GGCCCAATTACCGTTGATGAA 58.904 47.619 0.00 0.00 0.00 2.57
977 1385 0.472471 ACAACCAGATCAACGGGTGT 59.528 50.000 12.38 12.38 45.71 4.16
1203 1615 4.717629 TTCCACGAGGTGAGCGCG 62.718 66.667 6.18 6.18 35.23 6.86
1223 1657 1.410153 GCCCCCACTTGCTTCATATTG 59.590 52.381 0.00 0.00 0.00 1.90
1237 1671 3.664107 TCATATTGGCTACGAATGGAGC 58.336 45.455 0.00 0.00 38.00 4.70
1283 1719 2.510238 GTGCTACCGCTGCCTCAG 60.510 66.667 0.00 0.00 36.97 3.35
1344 1780 4.942481 TTCTGCAGCGACGCGTGT 62.942 61.111 20.70 0.00 33.35 4.49
1463 1913 3.281727 ACCTTGTTCTTCTGTGAGCAA 57.718 42.857 0.00 0.00 36.16 3.91
1469 1919 4.454678 TGTTCTTCTGTGAGCAATGACTT 58.545 39.130 0.00 0.00 0.00 3.01
1530 1983 4.461081 TGCCATGACCGCTTAACTTTATTT 59.539 37.500 0.00 0.00 0.00 1.40
1540 1997 8.466798 ACCGCTTAACTTTATTTTATGATGCTT 58.533 29.630 0.00 0.00 0.00 3.91
1667 2127 2.852714 AGGGATTCCATGGCATTGAA 57.147 45.000 15.39 15.39 34.83 2.69
1750 2210 3.943381 TCTTGATGTTGATGTGCATCTCC 59.057 43.478 12.64 4.73 41.33 3.71
1844 2304 3.165058 TCGATTGTCAGTGTAGCATCC 57.835 47.619 0.00 0.00 0.00 3.51
2010 2470 4.715297 ACCAGGGTACACTTATTGAGGTAG 59.285 45.833 0.00 0.00 0.00 3.18
2097 2570 5.363562 TTCATATGTCCATCTTCACAGCT 57.636 39.130 1.90 0.00 0.00 4.24
2104 2577 4.526650 TGTCCATCTTCACAGCTGTAACTA 59.473 41.667 21.20 6.31 0.00 2.24
2113 2586 7.862873 TCTTCACAGCTGTAACTATTATCATCG 59.137 37.037 21.20 1.57 0.00 3.84
2452 2953 7.332951 GGATCTTCTATCCTCAGCAGTAGCG 62.333 52.000 0.00 0.00 39.39 4.26
2561 3062 1.541379 CCTGTTAACGGGAAAAGGGG 58.459 55.000 26.83 0.00 45.36 4.79
2562 3063 1.074244 CCTGTTAACGGGAAAAGGGGA 59.926 52.381 26.83 0.00 45.36 4.81
2563 3064 2.291346 CCTGTTAACGGGAAAAGGGGAT 60.291 50.000 26.83 0.00 45.36 3.85
2575 3076 9.524496 ACGGGAAAAGGGGATATTAATATTTAC 57.476 33.333 9.33 0.89 0.00 2.01
2602 3103 5.883685 ATGGCTCTCATTATGACTTCTGA 57.116 39.130 0.00 0.00 30.55 3.27
2603 3104 5.682234 TGGCTCTCATTATGACTTCTGAA 57.318 39.130 0.00 0.00 0.00 3.02
2604 3105 5.668471 TGGCTCTCATTATGACTTCTGAAG 58.332 41.667 15.59 15.59 0.00 3.02
2605 3106 5.188555 TGGCTCTCATTATGACTTCTGAAGT 59.811 40.000 22.20 22.20 46.38 3.01
2606 3107 6.112058 GGCTCTCATTATGACTTCTGAAGTT 58.888 40.000 22.80 11.58 43.03 2.66
2607 3108 6.597280 GGCTCTCATTATGACTTCTGAAGTTT 59.403 38.462 22.80 15.86 43.03 2.66
2608 3109 7.120432 GGCTCTCATTATGACTTCTGAAGTTTT 59.880 37.037 22.80 15.55 43.03 2.43
2609 3110 8.510505 GCTCTCATTATGACTTCTGAAGTTTTT 58.489 33.333 22.80 13.39 43.03 1.94
2619 3120 9.301153 TGACTTCTGAAGTTTTTATTTGAAAGC 57.699 29.630 22.80 6.80 43.03 3.51
2620 3121 9.301153 GACTTCTGAAGTTTTTATTTGAAAGCA 57.699 29.630 22.80 0.00 43.03 3.91
2621 3122 9.651913 ACTTCTGAAGTTTTTATTTGAAAGCAA 57.348 25.926 17.00 0.00 39.04 3.91
2623 3124 8.647143 TCTGAAGTTTTTATTTGAAAGCAAGG 57.353 30.769 0.00 0.00 35.04 3.61
2624 3125 8.474025 TCTGAAGTTTTTATTTGAAAGCAAGGA 58.526 29.630 0.00 0.00 35.04 3.36
2684 3185 0.592637 TGCTGCATTTCCTTGTGACG 59.407 50.000 0.00 0.00 0.00 4.35
2714 3216 3.888323 TGTTGTTGTCTGTTGTGGCATAT 59.112 39.130 0.00 0.00 0.00 1.78
2715 3217 4.229096 GTTGTTGTCTGTTGTGGCATATG 58.771 43.478 0.00 0.00 0.00 1.78
2718 3220 4.216042 TGTTGTCTGTTGTGGCATATGAAG 59.784 41.667 6.97 0.00 0.00 3.02
2779 3281 8.924303 TCAGTACTATGCAACTCCAAGTTATAT 58.076 33.333 0.00 0.00 36.03 0.86
2786 3288 6.953101 TGCAACTCCAAGTTATATCCACTAA 58.047 36.000 0.00 0.00 36.03 2.24
2787 3289 7.573710 TGCAACTCCAAGTTATATCCACTAAT 58.426 34.615 0.00 0.00 36.03 1.73
2788 3290 7.715249 TGCAACTCCAAGTTATATCCACTAATC 59.285 37.037 0.00 0.00 36.03 1.75
2789 3291 7.715249 GCAACTCCAAGTTATATCCACTAATCA 59.285 37.037 0.00 0.00 36.03 2.57
2790 3292 9.046296 CAACTCCAAGTTATATCCACTAATCAC 57.954 37.037 0.00 0.00 36.03 3.06
2791 3293 8.554490 ACTCCAAGTTATATCCACTAATCACT 57.446 34.615 0.00 0.00 0.00 3.41
2792 3294 9.656323 ACTCCAAGTTATATCCACTAATCACTA 57.344 33.333 0.00 0.00 0.00 2.74
2805 3307 9.347240 TCCACTAATCACTAATGTACTACTACC 57.653 37.037 0.00 0.00 0.00 3.18
2806 3308 9.352191 CCACTAATCACTAATGTACTACTACCT 57.648 37.037 0.00 0.00 0.00 3.08
2808 3310 9.571816 ACTAATCACTAATGTACTACTACCTCC 57.428 37.037 0.00 0.00 0.00 4.30
2809 3311 7.507733 AATCACTAATGTACTACTACCTCCG 57.492 40.000 0.00 0.00 0.00 4.63
2810 3312 6.239217 TCACTAATGTACTACTACCTCCGA 57.761 41.667 0.00 0.00 0.00 4.55
2811 3313 6.835174 TCACTAATGTACTACTACCTCCGAT 58.165 40.000 0.00 0.00 0.00 4.18
2812 3314 6.933521 TCACTAATGTACTACTACCTCCGATC 59.066 42.308 0.00 0.00 0.00 3.69
2813 3315 6.149142 CACTAATGTACTACTACCTCCGATCC 59.851 46.154 0.00 0.00 0.00 3.36
2814 3316 4.719026 ATGTACTACTACCTCCGATCCA 57.281 45.455 0.00 0.00 0.00 3.41
2815 3317 4.719026 TGTACTACTACCTCCGATCCAT 57.281 45.455 0.00 0.00 0.00 3.41
2816 3318 5.830799 TGTACTACTACCTCCGATCCATA 57.169 43.478 0.00 0.00 0.00 2.74
2817 3319 6.191657 TGTACTACTACCTCCGATCCATAA 57.808 41.667 0.00 0.00 0.00 1.90
2818 3320 6.787170 TGTACTACTACCTCCGATCCATAAT 58.213 40.000 0.00 0.00 0.00 1.28
2819 3321 7.921304 TGTACTACTACCTCCGATCCATAATA 58.079 38.462 0.00 0.00 0.00 0.98
2820 3322 8.385491 TGTACTACTACCTCCGATCCATAATAA 58.615 37.037 0.00 0.00 0.00 1.40
2821 3323 7.941431 ACTACTACCTCCGATCCATAATAAG 57.059 40.000 0.00 0.00 0.00 1.73
2822 3324 7.468496 ACTACTACCTCCGATCCATAATAAGT 58.532 38.462 0.00 0.00 0.00 2.24
2823 3325 6.591750 ACTACCTCCGATCCATAATAAGTG 57.408 41.667 0.00 0.00 0.00 3.16
2824 3326 6.075984 ACTACCTCCGATCCATAATAAGTGT 58.924 40.000 0.00 0.00 0.00 3.55
2825 3327 5.470047 ACCTCCGATCCATAATAAGTGTC 57.530 43.478 0.00 0.00 0.00 3.67
2826 3328 4.022242 ACCTCCGATCCATAATAAGTGTCG 60.022 45.833 0.00 0.00 0.00 4.35
2827 3329 3.909430 TCCGATCCATAATAAGTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
2828 3330 3.319689 TCCGATCCATAATAAGTGTCGCA 59.680 43.478 0.00 0.00 0.00 5.10
2829 3331 3.675225 CCGATCCATAATAAGTGTCGCAG 59.325 47.826 0.00 0.00 0.00 5.18
2830 3332 4.299155 CGATCCATAATAAGTGTCGCAGT 58.701 43.478 0.00 0.00 0.00 4.40
2831 3333 4.745125 CGATCCATAATAAGTGTCGCAGTT 59.255 41.667 5.48 5.48 0.00 3.16
2832 3334 5.234329 CGATCCATAATAAGTGTCGCAGTTT 59.766 40.000 5.46 0.00 0.00 2.66
2833 3335 6.238103 CGATCCATAATAAGTGTCGCAGTTTT 60.238 38.462 5.46 3.95 0.00 2.43
2834 3336 6.176975 TCCATAATAAGTGTCGCAGTTTTG 57.823 37.500 5.46 1.31 0.00 2.44
2835 3337 5.935206 TCCATAATAAGTGTCGCAGTTTTGA 59.065 36.000 5.46 0.00 0.00 2.69
2836 3338 6.428465 TCCATAATAAGTGTCGCAGTTTTGAA 59.572 34.615 5.46 0.00 0.00 2.69
2837 3339 6.523201 CCATAATAAGTGTCGCAGTTTTGAAC 59.477 38.462 5.46 0.00 0.00 3.18
2838 3340 5.751243 AATAAGTGTCGCAGTTTTGAACT 57.249 34.783 5.46 0.00 44.06 3.01
2839 3341 6.854496 AATAAGTGTCGCAGTTTTGAACTA 57.146 33.333 5.46 0.00 40.46 2.24
2840 3342 6.854496 ATAAGTGTCGCAGTTTTGAACTAA 57.146 33.333 5.46 0.00 40.46 2.24
2841 3343 4.531659 AGTGTCGCAGTTTTGAACTAAC 57.468 40.909 0.00 0.00 40.46 2.34
2842 3344 3.311596 AGTGTCGCAGTTTTGAACTAACC 59.688 43.478 0.00 0.00 40.46 2.85
2843 3345 3.311596 GTGTCGCAGTTTTGAACTAACCT 59.688 43.478 0.00 0.00 40.46 3.50
2844 3346 3.942748 TGTCGCAGTTTTGAACTAACCTT 59.057 39.130 0.00 0.00 40.46 3.50
2845 3347 5.006941 GTGTCGCAGTTTTGAACTAACCTTA 59.993 40.000 0.00 0.00 40.46 2.69
2846 3348 5.235616 TGTCGCAGTTTTGAACTAACCTTAG 59.764 40.000 0.00 0.00 40.46 2.18
2847 3349 5.235831 GTCGCAGTTTTGAACTAACCTTAGT 59.764 40.000 0.00 0.00 45.43 2.24
2860 3362 7.182361 ACTAACCTTAGTTTAAAACTGCGAC 57.818 36.000 0.00 0.00 40.96 5.19
2861 3363 6.762661 ACTAACCTTAGTTTAAAACTGCGACA 59.237 34.615 0.00 0.00 40.96 4.35
2862 3364 5.413969 ACCTTAGTTTAAAACTGCGACAC 57.586 39.130 0.00 0.00 42.84 3.67
2863 3365 5.121105 ACCTTAGTTTAAAACTGCGACACT 58.879 37.500 0.00 0.00 42.84 3.55
2864 3366 5.587443 ACCTTAGTTTAAAACTGCGACACTT 59.413 36.000 0.00 0.00 42.84 3.16
2865 3367 6.762661 ACCTTAGTTTAAAACTGCGACACTTA 59.237 34.615 0.00 0.00 42.84 2.24
2866 3368 7.443272 ACCTTAGTTTAAAACTGCGACACTTAT 59.557 33.333 0.00 0.00 42.84 1.73
2867 3369 8.287503 CCTTAGTTTAAAACTGCGACACTTATT 58.712 33.333 0.00 0.00 42.84 1.40
2868 3370 9.659830 CTTAGTTTAAAACTGCGACACTTATTT 57.340 29.630 0.00 0.00 42.84 1.40
2870 3372 8.335256 AGTTTAAAACTGCGACACTTATTTTG 57.665 30.769 0.00 0.00 41.01 2.44
2871 3373 7.434013 AGTTTAAAACTGCGACACTTATTTTGG 59.566 33.333 0.00 0.00 41.01 3.28
2872 3374 5.508200 AAAACTGCGACACTTATTTTGGA 57.492 34.783 0.00 0.00 0.00 3.53
2873 3375 5.705609 AAACTGCGACACTTATTTTGGAT 57.294 34.783 0.00 0.00 0.00 3.41
2874 3376 4.946784 ACTGCGACACTTATTTTGGATC 57.053 40.909 0.00 0.00 0.00 3.36
2875 3377 3.370978 ACTGCGACACTTATTTTGGATCG 59.629 43.478 0.00 0.00 0.00 3.69
2876 3378 2.675844 TGCGACACTTATTTTGGATCGG 59.324 45.455 0.00 0.00 0.00 4.18
2880 3382 4.024893 CGACACTTATTTTGGATCGGATGG 60.025 45.833 0.00 0.00 0.00 3.51
2883 3385 5.126067 CACTTATTTTGGATCGGATGGAGT 58.874 41.667 0.00 0.00 0.00 3.85
2901 3403 7.063780 GGATGGAGTATTTGTTTGCTTTCATTG 59.936 37.037 0.00 0.00 0.00 2.82
2916 3418 5.625921 TTTCATTGCACTCGATGATGAAA 57.374 34.783 13.72 13.72 41.46 2.69
3021 3523 6.582295 GTGACACACAACAATGGATGTAATTC 59.418 38.462 0.00 0.00 42.99 2.17
3147 3653 6.245408 TCCAAATACTCACATAGTTTGGCTT 58.755 36.000 9.65 0.00 42.37 4.35
3493 4003 6.435277 ACATCAGTTTCTGCTATGGTTCATTT 59.565 34.615 0.00 0.00 0.00 2.32
3577 4087 2.571212 CAACACTTGCAGGTTCCTGTA 58.429 47.619 18.42 12.47 36.52 2.74
3621 4131 5.071788 TGAAGTGAACTGGTAGAGTCCAAAT 59.928 40.000 0.00 0.00 37.01 2.32
3622 4132 6.269077 TGAAGTGAACTGGTAGAGTCCAAATA 59.731 38.462 0.00 0.00 37.01 1.40
3623 4133 6.038997 AGTGAACTGGTAGAGTCCAAATAC 57.961 41.667 0.00 0.00 37.01 1.89
3624 4134 5.780793 AGTGAACTGGTAGAGTCCAAATACT 59.219 40.000 0.00 0.00 37.01 2.12
3625 4135 6.952358 AGTGAACTGGTAGAGTCCAAATACTA 59.048 38.462 0.00 0.00 37.01 1.82
3626 4136 7.453752 AGTGAACTGGTAGAGTCCAAATACTAA 59.546 37.037 0.00 0.00 37.01 2.24
3627 4137 8.092687 GTGAACTGGTAGAGTCCAAATACTAAA 58.907 37.037 0.00 0.00 37.01 1.85
3629 4139 7.549147 ACTGGTAGAGTCCAAATACTAAACA 57.451 36.000 0.00 0.00 37.01 2.83
3630 4140 8.147244 ACTGGTAGAGTCCAAATACTAAACAT 57.853 34.615 0.00 0.00 37.01 2.71
3721 4318 8.723942 AGTTGACATTGTAAGATCATTAGGTC 57.276 34.615 0.00 0.00 0.00 3.85
3787 4401 7.818493 TCTTGATGCATTCGCTATATACTTC 57.182 36.000 0.00 0.00 39.64 3.01
3803 4417 9.416794 CTATATACTTCTGTCAAAGCTACCATG 57.583 37.037 0.00 0.00 0.00 3.66
3836 4450 6.723298 TTTTTCAAAGGAAAGCTACCATCA 57.277 33.333 11.59 0.00 43.47 3.07
3840 4454 4.761739 TCAAAGGAAAGCTACCATCAGTTG 59.238 41.667 11.59 7.73 0.00 3.16
3844 4458 4.762251 AGGAAAGCTACCATCAGTTGTTTC 59.238 41.667 11.59 0.00 0.00 2.78
3868 4482 6.652481 TCTGAAAGAAATCTGTCTTCACATCC 59.348 38.462 2.46 0.00 42.31 3.51
3895 4509 8.801299 TCATTTCTTATGCAGGTTAAACATGAA 58.199 29.630 0.00 0.00 30.30 2.57
3896 4510 8.863049 CATTTCTTATGCAGGTTAAACATGAAC 58.137 33.333 0.00 0.00 30.30 3.18
3898 4512 7.144722 TCTTATGCAGGTTAAACATGAACAG 57.855 36.000 0.00 0.00 30.30 3.16
4064 4678 6.095860 TCAATCACTATCCTTCCAATTTGCAG 59.904 38.462 0.00 0.00 0.00 4.41
4134 4748 8.991243 TCAGTTGATGAATGGAATTGATTTTC 57.009 30.769 0.00 0.00 36.07 2.29
4135 4749 8.586744 TCAGTTGATGAATGGAATTGATTTTCA 58.413 29.630 0.00 0.00 36.07 2.69
4192 4806 4.760204 ACTTTTAGAGTTTCATTGACCCCG 59.240 41.667 0.00 0.00 33.92 5.73
4244 4858 4.496341 CCGCCTGCACATTTTCTAGTTATG 60.496 45.833 0.00 0.00 0.00 1.90
4247 4861 5.393461 GCCTGCACATTTTCTAGTTATGCTT 60.393 40.000 0.00 0.00 32.81 3.91
4248 4862 6.624423 CCTGCACATTTTCTAGTTATGCTTT 58.376 36.000 0.00 0.00 32.81 3.51
4251 4865 7.307694 TGCACATTTTCTAGTTATGCTTTCTG 58.692 34.615 0.00 0.00 32.81 3.02
4337 5056 9.214957 CAACAGTTGATACATACAGGTCTTTAA 57.785 33.333 7.61 0.00 0.00 1.52
4368 5087 7.068470 GGTCAGTATAGTCCTAGTTAAGCAAGT 59.932 40.741 0.00 0.00 0.00 3.16
4370 5089 8.684520 TCAGTATAGTCCTAGTTAAGCAAGTTC 58.315 37.037 0.00 0.00 0.00 3.01
4371 5090 8.467598 CAGTATAGTCCTAGTTAAGCAAGTTCA 58.532 37.037 0.00 0.00 0.00 3.18
4378 5097 5.645497 CCTAGTTAAGCAAGTTCAGCAATCT 59.355 40.000 0.00 0.00 0.00 2.40
4379 5098 6.150140 CCTAGTTAAGCAAGTTCAGCAATCTT 59.850 38.462 0.00 0.00 0.00 2.40
4402 5121 1.135046 CGACACAGCAAGTCACTCAG 58.865 55.000 4.48 0.00 35.77 3.35
4413 5132 1.617850 AGTCACTCAGAGAAGCACCAG 59.382 52.381 3.79 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.825679 CCATTCCTTTCCACCGAACATATAA 59.174 40.000 0.00 0.00 0.00 0.98
38 39 2.576191 AGAATCCATTCCTTTCCACCGA 59.424 45.455 0.00 0.00 37.51 4.69
39 40 3.004752 AGAATCCATTCCTTTCCACCG 57.995 47.619 0.00 0.00 37.51 4.94
85 86 1.852067 AACATGTCTTTGTCGCCGGC 61.852 55.000 19.07 19.07 0.00 6.13
105 106 2.076100 TCATTGTTAGCAAGCTCACGG 58.924 47.619 0.00 0.00 38.10 4.94
127 128 0.037697 GTCACATACTGGCGTGGACA 60.038 55.000 0.00 0.00 33.83 4.02
136 137 7.329717 GGAGTTGTCTCTAAAAGTCACATACTG 59.670 40.741 0.00 0.00 38.42 2.74
166 167 1.240641 CCAAGGCCATGCACGTTGTA 61.241 55.000 5.01 0.00 32.43 2.41
167 168 2.563798 CCAAGGCCATGCACGTTGT 61.564 57.895 5.01 0.00 32.43 3.32
171 172 1.656818 CCTTACCAAGGCCATGCACG 61.657 60.000 5.01 0.00 42.78 5.34
216 217 8.955061 AGAGATTCGACAATGTAACATTTTTG 57.045 30.769 0.00 0.00 0.00 2.44
222 223 5.789521 TCCAAGAGATTCGACAATGTAACA 58.210 37.500 0.00 0.00 0.00 2.41
223 224 6.910536 ATCCAAGAGATTCGACAATGTAAC 57.089 37.500 0.00 0.00 0.00 2.50
224 225 7.552459 TGTATCCAAGAGATTCGACAATGTAA 58.448 34.615 0.00 0.00 36.33 2.41
226 227 5.977635 TGTATCCAAGAGATTCGACAATGT 58.022 37.500 0.00 0.00 36.33 2.71
227 228 6.045318 ACTGTATCCAAGAGATTCGACAATG 58.955 40.000 0.00 0.00 36.33 2.82
228 229 6.097554 AGACTGTATCCAAGAGATTCGACAAT 59.902 38.462 0.00 0.00 36.33 2.71
229 230 5.419155 AGACTGTATCCAAGAGATTCGACAA 59.581 40.000 0.00 0.00 36.33 3.18
230 231 4.950475 AGACTGTATCCAAGAGATTCGACA 59.050 41.667 0.00 0.00 36.33 4.35
231 232 5.508200 AGACTGTATCCAAGAGATTCGAC 57.492 43.478 0.00 0.00 36.33 4.20
232 233 6.358178 AGTAGACTGTATCCAAGAGATTCGA 58.642 40.000 0.00 0.00 36.33 3.71
233 234 6.627395 AGTAGACTGTATCCAAGAGATTCG 57.373 41.667 0.00 0.00 36.33 3.34
250 253 9.698617 CGGCAAGTTTATATACAAAAAGTAGAC 57.301 33.333 0.00 0.00 35.85 2.59
259 262 7.908827 TCAAAGTCGGCAAGTTTATATACAA 57.091 32.000 0.00 0.00 0.00 2.41
265 268 9.139174 CATTAAAATCAAAGTCGGCAAGTTTAT 57.861 29.630 0.00 0.00 0.00 1.40
268 271 6.512297 ACATTAAAATCAAAGTCGGCAAGTT 58.488 32.000 0.00 0.00 0.00 2.66
336 339 6.602179 CGCACATCGATGAAAACCATATATT 58.398 36.000 31.33 1.24 41.67 1.28
349 353 0.317020 TCTCTACGCGCACATCGATG 60.317 55.000 23.68 23.68 41.67 3.84
351 355 0.317020 CATCTCTACGCGCACATCGA 60.317 55.000 5.73 0.00 41.67 3.59
354 358 2.515926 AATCATCTCTACGCGCACAT 57.484 45.000 5.73 0.00 0.00 3.21
356 360 4.915667 TGTATAAATCATCTCTACGCGCAC 59.084 41.667 5.73 0.00 0.00 5.34
358 362 6.089551 ACAATGTATAAATCATCTCTACGCGC 59.910 38.462 5.73 0.00 0.00 6.86
359 363 7.568267 ACAATGTATAAATCATCTCTACGCG 57.432 36.000 3.53 3.53 0.00 6.01
360 364 8.978539 TCAACAATGTATAAATCATCTCTACGC 58.021 33.333 0.00 0.00 0.00 4.42
402 406 6.299141 ACAATAAGACATGTGTGAGGTTTCT 58.701 36.000 1.15 0.00 0.00 2.52
403 407 6.560253 ACAATAAGACATGTGTGAGGTTTC 57.440 37.500 1.15 0.00 0.00 2.78
404 408 8.458573 TTTACAATAAGACATGTGTGAGGTTT 57.541 30.769 1.15 0.00 0.00 3.27
451 456 8.211629 GTCCCAACATGTCCTAGTTTTCTATAT 58.788 37.037 0.00 0.00 0.00 0.86
452 457 7.365295 GGTCCCAACATGTCCTAGTTTTCTATA 60.365 40.741 0.00 0.00 0.00 1.31
475 480 9.305925 CCTTTTGATTAGATTATTTGCAAGGTC 57.694 33.333 0.00 0.00 0.00 3.85
562 574 3.883830 TGGCAACTTTTTCTGCTTGAA 57.116 38.095 0.00 0.00 38.65 2.69
564 576 4.121317 TCATTGGCAACTTTTTCTGCTTG 58.879 39.130 0.00 0.00 38.65 4.01
566 578 4.405116 TTCATTGGCAACTTTTTCTGCT 57.595 36.364 0.00 0.00 38.65 4.24
567 579 5.482686 TTTTCATTGGCAACTTTTTCTGC 57.517 34.783 0.00 0.00 37.86 4.26
568 580 9.815936 GATATTTTTCATTGGCAACTTTTTCTG 57.184 29.630 0.00 0.00 37.61 3.02
569 581 9.558396 TGATATTTTTCATTGGCAACTTTTTCT 57.442 25.926 0.00 0.00 37.61 2.52
576 588 7.311364 AGCATTGATATTTTTCATTGGCAAC 57.689 32.000 0.00 0.00 31.04 4.17
579 591 6.917477 TCGTAGCATTGATATTTTTCATTGGC 59.083 34.615 0.00 0.00 31.04 4.52
582 594 8.450578 TCCTCGTAGCATTGATATTTTTCATT 57.549 30.769 0.00 0.00 0.00 2.57
583 595 7.933577 TCTCCTCGTAGCATTGATATTTTTCAT 59.066 33.333 0.00 0.00 0.00 2.57
586 598 6.483640 GGTCTCCTCGTAGCATTGATATTTTT 59.516 38.462 0.00 0.00 0.00 1.94
616 628 7.508687 AGCATTTGGACCAAAAAGATTAGTTT 58.491 30.769 23.11 0.18 36.90 2.66
633 655 3.370978 CGAGTACCAGTGTAAGCATTTGG 59.629 47.826 0.00 0.00 37.86 3.28
687 721 1.883275 CCTCCCATTAAACGCACAACA 59.117 47.619 0.00 0.00 0.00 3.33
690 724 1.626321 TCTCCTCCCATTAAACGCACA 59.374 47.619 0.00 0.00 0.00 4.57
691 725 2.007608 GTCTCCTCCCATTAAACGCAC 58.992 52.381 0.00 0.00 0.00 5.34
692 726 1.404986 CGTCTCCTCCCATTAAACGCA 60.405 52.381 0.00 0.00 0.00 5.24
693 727 1.287425 CGTCTCCTCCCATTAAACGC 58.713 55.000 0.00 0.00 0.00 4.84
694 728 2.667473 ACGTCTCCTCCCATTAAACG 57.333 50.000 0.00 0.00 35.00 3.60
695 729 4.182339 GAGAACGTCTCCTCCCATTAAAC 58.818 47.826 0.00 0.00 37.55 2.01
696 730 3.119245 CGAGAACGTCTCCTCCCATTAAA 60.119 47.826 8.73 0.00 40.34 1.52
697 731 2.426024 CGAGAACGTCTCCTCCCATTAA 59.574 50.000 8.73 0.00 40.34 1.40
699 733 0.818296 CGAGAACGTCTCCTCCCATT 59.182 55.000 8.73 0.00 40.34 3.16
701 735 3.998156 CGAGAACGTCTCCTCCCA 58.002 61.111 8.73 0.00 40.34 4.37
723 757 5.866106 AGTGGCCACGTACACATTTGTGA 62.866 47.826 29.68 0.00 41.42 3.58
724 758 3.639545 AGTGGCCACGTACACATTTGTG 61.640 50.000 29.68 9.10 43.06 3.33
726 760 1.234821 AGTGGCCACGTACACATTTG 58.765 50.000 29.68 0.00 39.99 2.32
736 770 0.802494 GGTATGACAAAGTGGCCACG 59.198 55.000 29.68 18.33 36.20 4.94
742 776 1.086696 CGGCCTGGTATGACAAAGTG 58.913 55.000 0.00 0.00 0.00 3.16
747 781 1.349688 AGAAAACGGCCTGGTATGACA 59.650 47.619 0.00 0.00 0.00 3.58
751 785 0.899720 TCGAGAAAACGGCCTGGTAT 59.100 50.000 0.00 0.00 0.00 2.73
756 790 1.726853 CATCTTCGAGAAAACGGCCT 58.273 50.000 0.00 0.00 0.00 5.19
758 792 1.061276 GAGCATCTTCGAGAAAACGGC 59.939 52.381 0.00 0.00 0.00 5.68
759 793 2.337583 TGAGCATCTTCGAGAAAACGG 58.662 47.619 0.00 0.00 34.92 4.44
761 795 4.509600 CCCTATGAGCATCTTCGAGAAAAC 59.490 45.833 0.00 0.00 34.92 2.43
762 796 4.405680 TCCCTATGAGCATCTTCGAGAAAA 59.594 41.667 0.00 0.00 34.92 2.29
769 803 6.887013 ACATCATATCCCTATGAGCATCTTC 58.113 40.000 2.22 0.00 45.25 2.87
770 804 6.887886 ACATCATATCCCTATGAGCATCTT 57.112 37.500 2.22 0.00 45.25 2.40
773 807 7.687383 ACATACATCATATCCCTATGAGCAT 57.313 36.000 2.22 0.00 45.25 3.79
780 814 8.706322 ACGCATATACATACATCATATCCCTA 57.294 34.615 0.00 0.00 0.00 3.53
814 848 9.978044 ATACGCACGTACATCTATCTCTATATA 57.022 33.333 4.84 0.00 33.01 0.86
815 849 8.766151 CATACGCACGTACATCTATCTCTATAT 58.234 37.037 4.84 0.00 33.01 0.86
816 850 7.763071 ACATACGCACGTACATCTATCTCTATA 59.237 37.037 4.84 0.00 33.01 1.31
843 877 5.827797 GCACATCCACTCATCCCTATAAAAA 59.172 40.000 0.00 0.00 0.00 1.94
844 878 5.376625 GCACATCCACTCATCCCTATAAAA 58.623 41.667 0.00 0.00 0.00 1.52
849 883 0.752658 CGCACATCCACTCATCCCTA 59.247 55.000 0.00 0.00 0.00 3.53
853 887 2.826428 ACATACGCACATCCACTCATC 58.174 47.619 0.00 0.00 0.00 2.92
854 888 2.988010 ACATACGCACATCCACTCAT 57.012 45.000 0.00 0.00 0.00 2.90
855 889 4.119136 CAATACATACGCACATCCACTCA 58.881 43.478 0.00 0.00 0.00 3.41
857 891 3.466836 CCAATACATACGCACATCCACT 58.533 45.455 0.00 0.00 0.00 4.00
858 892 2.548057 CCCAATACATACGCACATCCAC 59.452 50.000 0.00 0.00 0.00 4.02
859 893 2.171659 ACCCAATACATACGCACATCCA 59.828 45.455 0.00 0.00 0.00 3.41
860 894 2.846193 ACCCAATACATACGCACATCC 58.154 47.619 0.00 0.00 0.00 3.51
861 895 3.874543 TCAACCCAATACATACGCACATC 59.125 43.478 0.00 0.00 0.00 3.06
862 896 3.876914 CTCAACCCAATACATACGCACAT 59.123 43.478 0.00 0.00 0.00 3.21
865 899 3.897141 TCTCAACCCAATACATACGCA 57.103 42.857 0.00 0.00 0.00 5.24
866 900 5.554822 TTTTCTCAACCCAATACATACGC 57.445 39.130 0.00 0.00 0.00 4.42
891 1299 6.693113 TCAGTCGTCTCATAAAAATCATCTCG 59.307 38.462 0.00 0.00 0.00 4.04
942 1350 2.616510 GGTTGTATCTGCCAACTGAGCT 60.617 50.000 0.00 0.00 41.47 4.09
977 1385 3.109928 TGGGAATGCAGAGAAGAGATCA 58.890 45.455 0.00 0.00 0.00 2.92
1101 1513 2.707849 GCGGGTAGCGAAGACTCCA 61.708 63.158 0.00 0.00 35.41 3.86
1130 1542 4.680537 AGTGGAGGACCTCGCCGT 62.681 66.667 15.46 0.00 38.24 5.68
1203 1615 1.410153 CAATATGAAGCAAGTGGGGGC 59.590 52.381 0.00 0.00 0.00 5.80
1223 1657 0.179108 AGTTCGCTCCATTCGTAGCC 60.179 55.000 0.00 0.00 35.22 3.93
1237 1671 4.459685 AGGAGACCAATCCGATATAGTTCG 59.540 45.833 0.00 0.00 44.65 3.95
1283 1719 2.272471 CCTTCCCCGCTTTCCTCC 59.728 66.667 0.00 0.00 0.00 4.30
1304 1740 2.363147 AGTCCCCTCTGGAGTCGC 60.363 66.667 0.00 0.00 43.85 5.19
1379 1815 2.777832 ACTGAATCTGCAGGAGGAAC 57.222 50.000 15.13 0.94 40.20 3.62
1436 1886 5.724328 TCACAGAAGAACAAGGTAGCATAG 58.276 41.667 0.00 0.00 0.00 2.23
1488 1941 9.445878 TCATGGCATATCTCAATCTCTTTATTC 57.554 33.333 0.00 0.00 0.00 1.75
1502 1955 3.071602 AGTTAAGCGGTCATGGCATATCT 59.928 43.478 0.00 0.00 0.00 1.98
1506 1959 2.128771 AAGTTAAGCGGTCATGGCAT 57.871 45.000 0.00 0.00 0.00 4.40
1530 1983 5.072040 TGACAGTCGAAGAAGCATCATAA 57.928 39.130 0.00 0.00 39.69 1.90
1540 1997 1.822506 ATCCGTCTGACAGTCGAAGA 58.177 50.000 21.21 12.24 0.00 2.87
1667 2127 2.558359 CAAAGACCAATCCGCCTTCTTT 59.442 45.455 0.00 0.00 37.06 2.52
1750 2210 7.306213 TGACAACGTTATTAGAGAGAAGTCAG 58.694 38.462 0.00 0.00 0.00 3.51
1844 2304 7.335422 ACACAAGAATAAAGACAGATAAGCCAG 59.665 37.037 0.00 0.00 0.00 4.85
2218 2691 6.831353 TCCTAAAAGTGGACTTCAACAATTCA 59.169 34.615 0.00 0.00 34.61 2.57
2452 2953 2.935849 TGATGCATCACATGTTACCGAC 59.064 45.455 25.42 0.00 39.84 4.79
2593 3094 9.301153 GCTTTCAAATAAAAACTTCAGAAGTCA 57.699 29.630 16.44 3.17 41.91 3.41
2594 3095 9.301153 TGCTTTCAAATAAAAACTTCAGAAGTC 57.699 29.630 16.44 0.00 41.91 3.01
2595 3096 9.651913 TTGCTTTCAAATAAAAACTTCAGAAGT 57.348 25.926 10.27 10.27 45.46 3.01
2597 3098 9.097257 CCTTGCTTTCAAATAAAAACTTCAGAA 57.903 29.630 0.00 0.00 0.00 3.02
2598 3099 8.474025 TCCTTGCTTTCAAATAAAAACTTCAGA 58.526 29.630 0.00 0.00 0.00 3.27
2599 3100 8.647143 TCCTTGCTTTCAAATAAAAACTTCAG 57.353 30.769 0.00 0.00 0.00 3.02
2608 3109 9.466497 AGAAGTCATATCCTTGCTTTCAAATAA 57.534 29.630 0.00 0.00 0.00 1.40
2610 3111 7.951347 AGAAGTCATATCCTTGCTTTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
2611 3112 8.862325 TTAGAAGTCATATCCTTGCTTTCAAA 57.138 30.769 0.00 0.00 0.00 2.69
2612 3113 8.862325 TTTAGAAGTCATATCCTTGCTTTCAA 57.138 30.769 0.00 0.00 0.00 2.69
2613 3114 8.103305 ACTTTAGAAGTCATATCCTTGCTTTCA 58.897 33.333 0.00 0.00 37.02 2.69
2614 3115 8.499403 ACTTTAGAAGTCATATCCTTGCTTTC 57.501 34.615 0.00 0.00 37.02 2.62
2615 3116 8.870075 AACTTTAGAAGTCATATCCTTGCTTT 57.130 30.769 0.00 0.00 41.91 3.51
2616 3117 8.325046 AGAACTTTAGAAGTCATATCCTTGCTT 58.675 33.333 0.00 0.00 41.91 3.91
2617 3118 7.856415 AGAACTTTAGAAGTCATATCCTTGCT 58.144 34.615 0.00 0.00 41.91 3.91
2618 3119 8.499403 AAGAACTTTAGAAGTCATATCCTTGC 57.501 34.615 0.00 0.00 41.91 4.01
2684 3185 6.472163 CCACAACAGACAACAACAAATTCTAC 59.528 38.462 0.00 0.00 0.00 2.59
2714 3216 3.313249 CAGACAGCACAATCAACACTTCA 59.687 43.478 0.00 0.00 0.00 3.02
2715 3217 3.561310 TCAGACAGCACAATCAACACTTC 59.439 43.478 0.00 0.00 0.00 3.01
2718 3220 2.874701 ACTCAGACAGCACAATCAACAC 59.125 45.455 0.00 0.00 0.00 3.32
2745 3247 9.542462 TGGAGTTGCATAGTACTGAAATAATAC 57.458 33.333 5.39 0.00 0.00 1.89
2779 3281 9.347240 GGTAGTAGTACATTAGTGATTAGTGGA 57.653 37.037 9.89 0.00 0.00 4.02
2786 3288 6.835174 TCGGAGGTAGTAGTACATTAGTGAT 58.165 40.000 9.89 0.00 0.00 3.06
2787 3289 6.239217 TCGGAGGTAGTAGTACATTAGTGA 57.761 41.667 9.89 0.00 0.00 3.41
2788 3290 6.149142 GGATCGGAGGTAGTAGTACATTAGTG 59.851 46.154 9.89 0.00 0.00 2.74
2789 3291 6.183361 TGGATCGGAGGTAGTAGTACATTAGT 60.183 42.308 9.89 0.00 0.00 2.24
2790 3292 6.236409 TGGATCGGAGGTAGTAGTACATTAG 58.764 44.000 9.89 1.68 0.00 1.73
2791 3293 6.191657 TGGATCGGAGGTAGTAGTACATTA 57.808 41.667 9.89 0.00 0.00 1.90
2792 3294 5.057843 TGGATCGGAGGTAGTAGTACATT 57.942 43.478 9.89 0.00 0.00 2.71
2793 3295 4.719026 TGGATCGGAGGTAGTAGTACAT 57.281 45.455 9.89 2.02 0.00 2.29
2794 3296 4.719026 ATGGATCGGAGGTAGTAGTACA 57.281 45.455 9.89 0.00 0.00 2.90
2795 3297 8.798859 TTATTATGGATCGGAGGTAGTAGTAC 57.201 38.462 0.00 0.00 0.00 2.73
2796 3298 8.609483 ACTTATTATGGATCGGAGGTAGTAGTA 58.391 37.037 0.00 0.00 0.00 1.82
2797 3299 7.393796 CACTTATTATGGATCGGAGGTAGTAGT 59.606 40.741 0.00 0.00 0.00 2.73
2798 3300 7.393796 ACACTTATTATGGATCGGAGGTAGTAG 59.606 40.741 0.00 0.00 0.00 2.57
2799 3301 7.236529 ACACTTATTATGGATCGGAGGTAGTA 58.763 38.462 0.00 0.00 0.00 1.82
2800 3302 6.075984 ACACTTATTATGGATCGGAGGTAGT 58.924 40.000 0.00 0.00 0.00 2.73
2801 3303 6.591750 ACACTTATTATGGATCGGAGGTAG 57.408 41.667 0.00 0.00 0.00 3.18
2802 3304 5.182570 CGACACTTATTATGGATCGGAGGTA 59.817 44.000 0.00 0.00 0.00 3.08
2803 3305 4.022242 CGACACTTATTATGGATCGGAGGT 60.022 45.833 0.00 0.00 0.00 3.85
2804 3306 4.486090 CGACACTTATTATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
2805 3307 3.921021 GCGACACTTATTATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
2806 3308 3.319689 TGCGACACTTATTATGGATCGGA 59.680 43.478 0.00 0.00 0.00 4.55
2807 3309 3.649073 TGCGACACTTATTATGGATCGG 58.351 45.455 0.00 0.00 0.00 4.18
2808 3310 4.299155 ACTGCGACACTTATTATGGATCG 58.701 43.478 0.00 0.00 0.00 3.69
2809 3311 6.604735 AAACTGCGACACTTATTATGGATC 57.395 37.500 0.00 0.00 0.00 3.36
2810 3312 6.597672 TCAAAACTGCGACACTTATTATGGAT 59.402 34.615 0.00 0.00 0.00 3.41
2811 3313 5.935206 TCAAAACTGCGACACTTATTATGGA 59.065 36.000 0.00 0.00 0.00 3.41
2812 3314 6.176975 TCAAAACTGCGACACTTATTATGG 57.823 37.500 0.00 0.00 0.00 2.74
2813 3315 7.298122 AGTTCAAAACTGCGACACTTATTATG 58.702 34.615 0.00 0.00 41.01 1.90
2814 3316 7.435068 AGTTCAAAACTGCGACACTTATTAT 57.565 32.000 0.00 0.00 41.01 1.28
2815 3317 6.854496 AGTTCAAAACTGCGACACTTATTA 57.146 33.333 0.00 0.00 41.01 0.98
2816 3318 5.751243 AGTTCAAAACTGCGACACTTATT 57.249 34.783 0.00 0.00 41.01 1.40
2817 3319 6.293244 GGTTAGTTCAAAACTGCGACACTTAT 60.293 38.462 2.65 0.00 42.84 1.73
2818 3320 5.006941 GGTTAGTTCAAAACTGCGACACTTA 59.993 40.000 2.65 0.00 42.84 2.24
2819 3321 4.201881 GGTTAGTTCAAAACTGCGACACTT 60.202 41.667 2.65 0.00 42.84 3.16
2820 3322 3.311596 GGTTAGTTCAAAACTGCGACACT 59.688 43.478 2.65 0.00 42.84 3.55
2821 3323 3.311596 AGGTTAGTTCAAAACTGCGACAC 59.688 43.478 2.65 0.00 42.84 3.67
2822 3324 3.537580 AGGTTAGTTCAAAACTGCGACA 58.462 40.909 2.65 0.00 42.84 4.35
2823 3325 4.547406 AAGGTTAGTTCAAAACTGCGAC 57.453 40.909 2.65 0.00 42.84 5.19
2824 3326 5.362263 ACTAAGGTTAGTTCAAAACTGCGA 58.638 37.500 2.65 0.00 40.96 5.10
2825 3327 5.668558 ACTAAGGTTAGTTCAAAACTGCG 57.331 39.130 2.65 0.00 40.96 5.18
2836 3338 6.762661 TGTCGCAGTTTTAAACTAAGGTTAGT 59.237 34.615 10.21 0.00 45.43 2.24
2837 3339 7.042254 AGTGTCGCAGTTTTAAACTAAGGTTAG 60.042 37.037 10.21 0.00 40.46 2.34
2838 3340 6.762661 AGTGTCGCAGTTTTAAACTAAGGTTA 59.237 34.615 10.21 0.00 40.46 2.85
2839 3341 5.587443 AGTGTCGCAGTTTTAAACTAAGGTT 59.413 36.000 10.21 0.00 40.46 3.50
2840 3342 5.121105 AGTGTCGCAGTTTTAAACTAAGGT 58.879 37.500 10.21 0.00 40.46 3.50
2841 3343 5.668558 AGTGTCGCAGTTTTAAACTAAGG 57.331 39.130 10.21 3.25 40.46 2.69
2842 3344 9.659830 AAATAAGTGTCGCAGTTTTAAACTAAG 57.340 29.630 10.21 7.57 40.46 2.18
2844 3346 9.440784 CAAAATAAGTGTCGCAGTTTTAAACTA 57.559 29.630 10.21 0.00 40.46 2.24
2845 3347 7.434013 CCAAAATAAGTGTCGCAGTTTTAAACT 59.566 33.333 4.30 4.30 44.06 2.66
2846 3348 7.432838 TCCAAAATAAGTGTCGCAGTTTTAAAC 59.567 33.333 0.00 0.00 0.00 2.01
2847 3349 7.481642 TCCAAAATAAGTGTCGCAGTTTTAAA 58.518 30.769 5.46 0.00 0.00 1.52
2848 3350 7.028926 TCCAAAATAAGTGTCGCAGTTTTAA 57.971 32.000 5.46 0.00 0.00 1.52
2849 3351 6.621316 TCCAAAATAAGTGTCGCAGTTTTA 57.379 33.333 5.46 0.00 0.00 1.52
2850 3352 5.508200 TCCAAAATAAGTGTCGCAGTTTT 57.492 34.783 5.46 0.00 0.00 2.43
2851 3353 5.616866 CGATCCAAAATAAGTGTCGCAGTTT 60.617 40.000 5.46 0.00 0.00 2.66
2852 3354 4.142902 CGATCCAAAATAAGTGTCGCAGTT 60.143 41.667 5.48 5.48 0.00 3.16
2853 3355 3.370978 CGATCCAAAATAAGTGTCGCAGT 59.629 43.478 0.00 0.00 0.00 4.40
2854 3356 3.242413 CCGATCCAAAATAAGTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
2855 3357 2.675844 CCGATCCAAAATAAGTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
2856 3358 2.933906 TCCGATCCAAAATAAGTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
2857 3359 4.024893 CCATCCGATCCAAAATAAGTGTCG 60.025 45.833 0.00 0.00 0.00 4.35
2858 3360 5.123227 TCCATCCGATCCAAAATAAGTGTC 58.877 41.667 0.00 0.00 0.00 3.67
2859 3361 5.110814 TCCATCCGATCCAAAATAAGTGT 57.889 39.130 0.00 0.00 0.00 3.55
2860 3362 5.126067 ACTCCATCCGATCCAAAATAAGTG 58.874 41.667 0.00 0.00 0.00 3.16
2861 3363 5.373812 ACTCCATCCGATCCAAAATAAGT 57.626 39.130 0.00 0.00 0.00 2.24
2862 3364 7.986085 AATACTCCATCCGATCCAAAATAAG 57.014 36.000 0.00 0.00 0.00 1.73
2863 3365 7.777910 ACAAATACTCCATCCGATCCAAAATAA 59.222 33.333 0.00 0.00 0.00 1.40
2864 3366 7.287061 ACAAATACTCCATCCGATCCAAAATA 58.713 34.615 0.00 0.00 0.00 1.40
2865 3367 6.129179 ACAAATACTCCATCCGATCCAAAAT 58.871 36.000 0.00 0.00 0.00 1.82
2866 3368 5.505780 ACAAATACTCCATCCGATCCAAAA 58.494 37.500 0.00 0.00 0.00 2.44
2867 3369 5.110814 ACAAATACTCCATCCGATCCAAA 57.889 39.130 0.00 0.00 0.00 3.28
2868 3370 4.771114 ACAAATACTCCATCCGATCCAA 57.229 40.909 0.00 0.00 0.00 3.53
2869 3371 4.771114 AACAAATACTCCATCCGATCCA 57.229 40.909 0.00 0.00 0.00 3.41
2870 3372 4.261197 GCAAACAAATACTCCATCCGATCC 60.261 45.833 0.00 0.00 0.00 3.36
2871 3373 4.576463 AGCAAACAAATACTCCATCCGATC 59.424 41.667 0.00 0.00 0.00 3.69
2872 3374 4.526970 AGCAAACAAATACTCCATCCGAT 58.473 39.130 0.00 0.00 0.00 4.18
2873 3375 3.950397 AGCAAACAAATACTCCATCCGA 58.050 40.909 0.00 0.00 0.00 4.55
2874 3376 4.701956 AAGCAAACAAATACTCCATCCG 57.298 40.909 0.00 0.00 0.00 4.18
2875 3377 6.024552 TGAAAGCAAACAAATACTCCATCC 57.975 37.500 0.00 0.00 0.00 3.51
2876 3378 7.412237 GCAATGAAAGCAAACAAATACTCCATC 60.412 37.037 0.00 0.00 0.00 3.51
2880 3382 6.421801 AGTGCAATGAAAGCAAACAAATACTC 59.578 34.615 0.00 0.00 44.64 2.59
2883 3385 5.401972 CGAGTGCAATGAAAGCAAACAAATA 59.598 36.000 0.00 0.00 44.64 1.40
2901 3403 8.598924 CAATATAGGTATTTCATCATCGAGTGC 58.401 37.037 0.00 0.00 0.00 4.40
2953 3455 8.529424 TCTTTCTAATGCATCAATTGGAAGAT 57.471 30.769 5.42 0.00 38.01 2.40
3021 3523 5.471456 AGAAAAATCGCTGCTTATAGGATGG 59.529 40.000 0.00 0.00 0.00 3.51
3447 3957 4.415332 GCACGTCGAGGGAAGCGA 62.415 66.667 10.27 0.00 35.08 4.93
3493 4003 3.450578 GTCGGCGACCTTATGTGAATTA 58.549 45.455 28.72 0.00 0.00 1.40
3577 4087 2.138542 ACACTGGGGGCATATCTTGAT 58.861 47.619 0.00 0.00 0.00 2.57
3721 4318 7.481275 ACTTCAACAATGGCATTAAACAAAG 57.519 32.000 13.23 14.16 0.00 2.77
3787 4401 5.695851 AAAACTCATGGTAGCTTTGACAG 57.304 39.130 0.00 0.00 0.00 3.51
3818 4432 4.520492 ACAACTGATGGTAGCTTTCCTTTG 59.480 41.667 0.00 0.00 0.00 2.77
3836 4450 7.872113 AGACAGATTTCTTTCAGAAACAACT 57.128 32.000 1.02 0.33 45.83 3.16
3840 4454 7.697691 TGTGAAGACAGATTTCTTTCAGAAAC 58.302 34.615 1.02 0.00 45.83 2.78
3844 4458 6.654161 AGGATGTGAAGACAGATTTCTTTCAG 59.346 38.462 0.00 0.00 35.90 3.02
3868 4482 8.461222 TCATGTTTAACCTGCATAAGAAATGAG 58.539 33.333 0.00 0.00 0.00 2.90
3898 4512 5.907207 TCATAGATAGCTCAACAGGTTCAC 58.093 41.667 0.00 0.00 0.00 3.18
3908 4522 6.779539 TCTTTCTCCACATCATAGATAGCTCA 59.220 38.462 0.00 0.00 0.00 4.26
3993 4607 4.755266 AGGACACTGTACAGTTGAAGTT 57.245 40.909 25.89 7.17 40.20 2.66
4046 4660 4.275443 GCTCTCTGCAAATTGGAAGGATAG 59.725 45.833 0.00 0.00 42.31 2.08
4064 4678 1.478622 GCGACGATGAAGCTGCTCTC 61.479 60.000 1.00 3.80 0.00 3.20
4134 4748 6.480320 GTGGGAGCTACAGAACTGTTAATATG 59.520 42.308 12.66 0.00 41.83 1.78
4135 4749 6.384305 AGTGGGAGCTACAGAACTGTTAATAT 59.616 38.462 12.66 0.00 41.83 1.28
4151 4765 3.963476 AGTATGTAGAGAGTGGGAGCT 57.037 47.619 0.00 0.00 0.00 4.09
4152 4766 5.346181 AAAAGTATGTAGAGAGTGGGAGC 57.654 43.478 0.00 0.00 0.00 4.70
4192 4806 3.140325 TCCCCAATGTCTCAGTTTGTC 57.860 47.619 0.00 0.00 0.00 3.18
4244 4858 3.190874 CGAGTACATCTTCCCAGAAAGC 58.809 50.000 0.00 0.00 30.76 3.51
4247 4861 2.422479 CGACGAGTACATCTTCCCAGAA 59.578 50.000 0.00 0.00 30.76 3.02
4248 4862 2.014857 CGACGAGTACATCTTCCCAGA 58.985 52.381 0.00 0.00 0.00 3.86
4251 4865 2.422832 AGTTCGACGAGTACATCTTCCC 59.577 50.000 0.00 0.00 0.00 3.97
4293 5012 3.047093 GTTGGTGTACAAAATTCGGCAC 58.953 45.455 0.00 0.00 41.58 5.01
4358 5077 7.636359 CGTATAAGATTGCTGAACTTGCTTAAC 59.364 37.037 0.00 0.00 0.00 2.01
4368 5087 4.566759 GCTGTGTCGTATAAGATTGCTGAA 59.433 41.667 0.00 0.00 0.00 3.02
4370 5089 3.865164 TGCTGTGTCGTATAAGATTGCTG 59.135 43.478 0.00 0.00 0.00 4.41
4371 5090 4.123497 TGCTGTGTCGTATAAGATTGCT 57.877 40.909 0.00 0.00 0.00 3.91
4378 5097 4.022676 TGAGTGACTTGCTGTGTCGTATAA 60.023 41.667 0.00 0.00 37.26 0.98
4379 5098 3.504520 TGAGTGACTTGCTGTGTCGTATA 59.495 43.478 0.00 0.00 37.26 1.47
4402 5121 1.881973 TGCAATGTTCTGGTGCTTCTC 59.118 47.619 0.00 0.00 39.09 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.