AutoCloner

Multiple sequence alignment - TraesCS7A01G395600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G395600	chr7A	100.000	2345	0	0	1	2345	574089665	574092009	0.000000e+00	4331.0
1	TraesCS7A01G395600	chr7A	98.765	81	1	0	1495	1575	342425148	342425068	6.750000e-31	145.0
2	TraesCS7A01G395600	chr7B	89.373	1515	125	23	1	1501	534822996	534824488	0.000000e+00	1873.0
3	TraesCS7A01G395600	chr7B	83.942	411	38	8	1574	1973	534824474	534824867	3.680000e-98	368.0
4	TraesCS7A01G395600	chr7B	94.505	91	4	1	1485	1575	670283397	670283308	3.140000e-29	139.0
5	TraesCS7A01G395600	chr7D	93.763	946	36	13	1	943	506665000	506665925	0.000000e+00	1399.0
6	TraesCS7A01G395600	chr7D	95.068	811	35	4	692	1501	506658857	506659663	0.000000e+00	1271.0
7	TraesCS7A01G395600	chr7D	94.828	696	27	4	1	694	506651552	506652240	0.000000e+00	1077.0
8	TraesCS7A01G395600	chr7D	91.916	668	37	2	1574	2240	506667908	506668559	0.000000e+00	918.0
9	TraesCS7A01G395600	chr7D	91.058	671	35	9	1573	2240	506659648	506660296	0.000000e+00	883.0
10	TraesCS7A01G395600	chr7D	93.594	281	18	0	939	1219	506667424	506667704	1.000000e-113	420.0
11	TraesCS7A01G395600	chr7D	97.285	221	4	2	1282	1501	506667703	506667922	7.910000e-100	374.0
12	TraesCS7A01G395600	chr7D	98.113	106	2	0	2240	2345	506660360	506660465	3.980000e-43	185.0
13	TraesCS7A01G395600	chr7D	95.283	106	5	0	2240	2345	506668623	506668728	4.010000e-38	169.0
14	TraesCS7A01G395600	chr7D	83.735	166	26	1	398	563	56215954	56216118	3.120000e-34	156.0
15	TraesCS7A01G395600	chr4D	82.556	665	90	16	570	1226	421067864	421068510	1.570000e-156	562.0
16	TraesCS7A01G395600	chr4D	85.465	172	19	6	396	563	67285290	67285121	8.610000e-40	174.0
17	TraesCS7A01G395600	chr3D	78.200	711	138	14	769	1469	495166021	495166724	2.770000e-119	438.0
18	TraesCS7A01G395600	chr3B	77.465	710	147	10	769	1469	653991887	653992592	1.680000e-111	412.0
19	TraesCS7A01G395600	chr3B	93.878	98	2	2	1488	1585	23947052	23946959	6.750000e-31	145.0
20	TraesCS7A01G395600	chr3B	98.765	81	1	0	1495	1575	129725029	129724949	6.750000e-31	145.0
21	TraesCS7A01G395600	chr3A	77.433	709	146	11	769	1469	634573941	634574643	6.030000e-111	411.0
22	TraesCS7A01G395600	chr1B	84.706	170	23	2	396	563	380842298	380842130	1.440000e-37	167.0
23	TraesCS7A01G395600	chr4B	85.161	155	21	2	410	563	270505199	270505352	8.680000e-35	158.0
24	TraesCS7A01G395600	chr4A	84.472	161	19	6	406	563	516485298	516485141	1.120000e-33	154.0
25	TraesCS7A01G395600	chr4A	97.619	84	1	1	1492	1575	541363783	541363701	2.430000e-30	143.0
26	TraesCS7A01G395600	chr1D	82.840	169	26	3	396	563	465777999	465778165	5.220000e-32	148.0
27	TraesCS7A01G395600	chr6B	97.647	85	0	2	1493	1575	64739073	64738989	6.750000e-31	145.0
28	TraesCS7A01G395600	chr6A	100.000	78	0	0	1498	1575	77979846	77979923	6.750000e-31	145.0
29	TraesCS7A01G395600	chr5A	95.556	90	3	1	1487	1575	464473884	464473795	2.430000e-30	143.0
30	TraesCS7A01G395600	chr5B	96.471	85	2	1	1491	1575	458560030	458559947	3.140000e-29	139.0
31	TraesCS7A01G395600	chr5B	79.808	104	13	5	768	871	710241379	710241474	4.180000e-08	69.4
32	TraesCS7A01G395600	chr5D	81.319	91	16	1	811	901	556523558	556523469	3.230000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G395600	chr7A	574089665	574092009	2344	False	4331.000000	4331	100.000000	1	2345	1	chr7A.!!$F1	2344
1	TraesCS7A01G395600	chr7B	534822996	534824867	1871	False	1120.500000	1873	86.657500	1	1973	2	chr7B.!!$F1	1972
2	TraesCS7A01G395600	chr7D	506651552	506652240	688	False	1077.000000	1077	94.828000	1	694	1	chr7D.!!$F2	693
3	TraesCS7A01G395600	chr7D	506658857	506660465	1608	False	779.666667	1271	94.746333	692	2345	3	chr7D.!!$F3	1653
4	TraesCS7A01G395600	chr7D	506665000	506668728	3728	False	656.000000	1399	94.368200	1	2345	5	chr7D.!!$F4	2344
5	TraesCS7A01G395600	chr4D	421067864	421068510	646	False	562.000000	562	82.556000	570	1226	1	chr4D.!!$F1	656
6	TraesCS7A01G395600	chr3D	495166021	495166724	703	False	438.000000	438	78.200000	769	1469	1	chr3D.!!$F1	700
7	TraesCS7A01G395600	chr3B	653991887	653992592	705	False	412.000000	412	77.465000	769	1469	1	chr3B.!!$F1	700
8	TraesCS7A01G395600	chr3A	634573941	634574643	702	False	411.000000	411	77.433000	769	1469	1	chr3A.!!$F1	700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
987	2503	1.061546	ACCCAAAGTCGTACCACCAT	58.938	50.0	0.0	0.0	0.0	3.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1953	3484	1.671054	CCGACGGGCTCACACAATT	60.671	57.895	5.81	0.0	0.0	2.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
93	94	1.257675	GTGCGTGCAAATTTTCACACC	59.742	47.619	18.82	10.54	33.03	4.16
447	451	2.094258	CGCACGTGCATATGAGTTTTCT	59.906	45.455	37.03	0.00	42.21	2.52
459	463	9.197694	GCATATGAGTTTTCTACTGAATCGTAT	57.802	33.333	6.97	0.00	37.17	3.06
488	492	8.253810	TCCAAGATCATAGCAGTTATAGCATAC	58.746	37.037	0.00	0.00	0.00	2.39
708	714	4.591321	ACCAATAGAATCCAAGCCTTGA	57.409	40.909	5.89	0.00	0.00	3.02
930	943	3.951775	AACCAGCACAACAACAAGAAA	57.048	38.095	0.00	0.00	0.00	2.52
944	2460	5.011023	ACAACAAGAAACTTGATTGATCCCC	59.989	40.000	16.65	0.00	0.00	4.81
987	2503	1.061546	ACCCAAAGTCGTACCACCAT	58.938	50.000	0.00	0.00	0.00	3.55
1020	2537	1.722034	TGAGGACTTGCAGTCTCCTT	58.278	50.000	13.59	0.00	44.46	3.36
1024	2541	1.066502	GGACTTGCAGTCTCCTTCTCC	60.067	57.143	13.59	0.00	44.46	3.71
1044	2561	2.911509	ATTGCCGCCACTGTTGCA	60.912	55.556	4.67	0.00	0.00	4.08
1067	2584	1.102978	GCTTATCCCGTTGCCACATT	58.897	50.000	0.00	0.00	0.00	2.71
1130	2650	2.048222	CGTCCAAGAGCTCGGCAA	60.048	61.111	8.37	0.00	0.00	4.52
1316	2836	1.804151	GATTAGGAGCAACACACGCAA	59.196	47.619	0.00	0.00	0.00	4.85
1379	2899	7.460214	ACTGGGTGGATAGTATTTTTGGATA	57.540	36.000	0.00	0.00	0.00	2.59
1432	2953	7.646446	AATTTTTGTAAGCGGTATGGAAAAC	57.354	32.000	0.00	0.00	0.00	2.43
1479	3001	5.622346	TTGGCCTACAAATTTCAAAAGGT	57.378	34.783	3.32	0.00	35.79	3.50
1480	3002	6.732896	TTGGCCTACAAATTTCAAAAGGTA	57.267	33.333	3.32	0.00	35.79	3.08
1481	3003	6.339587	TGGCCTACAAATTTCAAAAGGTAG	57.660	37.500	3.32	4.80	0.00	3.18
1482	3004	5.836358	TGGCCTACAAATTTCAAAAGGTAGT	59.164	36.000	3.32	0.00	0.00	2.73
1483	3005	6.325286	TGGCCTACAAATTTCAAAAGGTAGTT	59.675	34.615	3.32	0.00	0.00	2.24
1485	3007	7.170828	GGCCTACAAATTTCAAAAGGTAGTTTG	59.829	37.037	0.00	0.00	39.41	2.93
1486	3008	7.307160	GCCTACAAATTTCAAAAGGTAGTTTGC	60.307	37.037	9.15	4.06	38.20	3.68
1487	3009	7.926018	CCTACAAATTTCAAAAGGTAGTTTGCT	59.074	33.333	9.15	0.00	38.20	3.91
1488	3010	7.770801	ACAAATTTCAAAAGGTAGTTTGCTC	57.229	32.000	0.00	0.00	38.20	4.26
1489	3011	6.761242	ACAAATTTCAAAAGGTAGTTTGCTCC	59.239	34.615	0.00	0.00	38.20	4.70
1490	3012	6.478512	AATTTCAAAAGGTAGTTTGCTCCA	57.521	33.333	0.00	0.00	38.20	3.86
1491	3013	6.670695	ATTTCAAAAGGTAGTTTGCTCCAT	57.329	33.333	0.00	0.00	38.20	3.41
1492	3014	5.705609	TTCAAAAGGTAGTTTGCTCCATC	57.294	39.130	0.00	0.00	38.20	3.51
1493	3015	4.724399	TCAAAAGGTAGTTTGCTCCATCA	58.276	39.130	0.00	0.00	38.20	3.07
1494	3016	5.324409	TCAAAAGGTAGTTTGCTCCATCAT	58.676	37.500	0.00	0.00	38.20	2.45
1495	3017	5.774690	TCAAAAGGTAGTTTGCTCCATCATT	59.225	36.000	0.00	0.00	38.20	2.57
1496	3018	6.945435	TCAAAAGGTAGTTTGCTCCATCATTA	59.055	34.615	0.00	0.00	38.20	1.90
1497	3019	7.450014	TCAAAAGGTAGTTTGCTCCATCATTAA	59.550	33.333	0.00	0.00	38.20	1.40
1498	3020	7.775053	AAAGGTAGTTTGCTCCATCATTAAA	57.225	32.000	0.00	0.00	0.00	1.52
1499	3021	7.961326	AAGGTAGTTTGCTCCATCATTAAAT	57.039	32.000	0.00	0.00	0.00	1.40
1500	3022	7.961326	AGGTAGTTTGCTCCATCATTAAATT	57.039	32.000	0.00	0.00	0.00	1.82
1501	3023	9.474313	AAGGTAGTTTGCTCCATCATTAAATTA	57.526	29.630	0.00	0.00	0.00	1.40
1502	3024	9.474313	AGGTAGTTTGCTCCATCATTAAATTAA	57.526	29.630	0.00	0.00	0.00	1.40
1526	3048	4.413928	GGCAACCTGGTGCATGTA	57.586	55.556	18.44	0.00	46.81	2.29
1527	3049	2.183409	GGCAACCTGGTGCATGTAG	58.817	57.895	18.44	0.00	46.81	2.74
1528	3050	1.508088	GCAACCTGGTGCATGTAGC	59.492	57.895	6.00	6.00	44.29	3.58
1529	3051	0.962356	GCAACCTGGTGCATGTAGCT	60.962	55.000	14.15	0.00	44.29	3.32
1530	3052	1.089920	CAACCTGGTGCATGTAGCTC	58.910	55.000	14.15	0.00	45.94	4.09
1536	3058	1.450312	GTGCATGTAGCTCCCGCTT	60.450	57.895	0.00	0.00	46.47	4.68
1537	3059	1.450134	TGCATGTAGCTCCCGCTTG	60.450	57.895	0.00	0.00	46.47	4.01
1538	3060	2.828128	GCATGTAGCTCCCGCTTGC	61.828	63.158	0.00	0.00	46.47	4.01
1539	3061	2.202932	ATGTAGCTCCCGCTTGCG	60.203	61.111	8.14	8.14	46.47	4.85
1542	3064	4.819761	TAGCTCCCGCTTGCGCAG	62.820	66.667	11.31	6.32	46.47	5.18
1554	3076	4.785453	GCGCAGGGTCCAGGGAAG	62.785	72.222	0.30	0.00	0.00	3.46
1555	3077	4.101448	CGCAGGGTCCAGGGAAGG	62.101	72.222	0.00	0.00	0.00	3.46
1556	3078	3.732849	GCAGGGTCCAGGGAAGGG	61.733	72.222	0.00	0.00	0.00	3.95
1557	3079	2.204151	CAGGGTCCAGGGAAGGGT	60.204	66.667	0.00	0.00	0.00	4.34
1558	3080	2.125225	AGGGTCCAGGGAAGGGTC	59.875	66.667	0.00	0.00	0.00	4.46
1559	3081	3.015753	GGGTCCAGGGAAGGGTCC	61.016	72.222	0.00	0.00	44.10	4.46
1560	3082	3.400054	GGTCCAGGGAAGGGTCCG	61.400	72.222	0.00	0.00	46.04	4.79
1561	3083	2.284405	GTCCAGGGAAGGGTCCGA	60.284	66.667	0.00	0.00	46.04	4.55
1562	3084	2.284405	TCCAGGGAAGGGTCCGAC	60.284	66.667	0.00	0.00	46.04	4.79
1563	3085	3.400054	CCAGGGAAGGGTCCGACC	61.400	72.222	9.30	9.30	46.04	4.79
1564	3086	2.606519	CAGGGAAGGGTCCGACCA	60.607	66.667	19.43	0.00	46.04	4.02
1565	3087	2.606826	AGGGAAGGGTCCGACCAC	60.607	66.667	19.43	8.70	46.04	4.16
1566	3088	2.606826	GGGAAGGGTCCGACCACT	60.607	66.667	19.43	10.80	46.04	4.00
1567	3089	2.222013	GGGAAGGGTCCGACCACTT	61.222	63.158	19.43	17.88	46.04	3.16
1568	3090	1.759236	GGAAGGGTCCGACCACTTT	59.241	57.895	19.43	9.96	41.02	2.66
1569	3091	0.605589	GGAAGGGTCCGACCACTTTG	60.606	60.000	19.43	0.00	41.02	2.77
1570	3092	0.605589	GAAGGGTCCGACCACTTTGG	60.606	60.000	19.43	0.00	41.02	3.28
1571	3093	2.033602	GGGTCCGACCACTTTGGG	59.966	66.667	19.43	0.00	43.37	4.12
1639	3162	3.079578	CTGGTTGTCATGTTGCATCTCT	58.920	45.455	0.00	0.00	0.00	3.10
1667	3190	3.321111	TCTCGGCATTATACTGAACTCCC	59.679	47.826	0.00	0.00	0.00	4.30
1712	3235	9.426534	TGCTATCAATCATGTACTATAGGCTAT	57.573	33.333	12.41	12.41	0.00	2.97
1722	3245	4.939052	ACTATAGGCTATCGTGCACTTT	57.061	40.909	16.19	4.39	34.04	2.66
1734	3257	0.735471	TGCACTTTGTTGCGCTGTTA	59.265	45.000	9.73	0.00	46.20	2.41
1899	3423	6.040391	TGGTATTTGTTTTGAAAGGAGAGTGG	59.960	38.462	0.00	0.00	0.00	4.00
1922	3453	2.163818	TGTTCTAGCGTGGTTCCTTG	57.836	50.000	0.00	0.00	0.00	3.61
1929	3460	0.387239	GCGTGGTTCCTTGCATGTTC	60.387	55.000	0.00	0.00	0.00	3.18
1953	3484	5.067153	CCGGCTTTATTGTCAATCAATGGTA	59.933	40.000	0.07	0.00	45.14	3.25
1989	3520	1.444553	GGTCGTCCAGTGAAGCTCG	60.445	63.158	0.00	0.00	0.00	5.03
2024	3555	2.345244	CCACTGCCTCACTCGCTT	59.655	61.111	0.00	0.00	0.00	4.68
2031	3564	1.362406	GCCTCACTCGCTTGCTTACC	61.362	60.000	0.00	0.00	0.00	2.85
2082	3615	7.800092	ACCTTAGAAGAGACATGCTATCAATT	58.200	34.615	0.00	0.00	0.00	2.32
2083	3616	8.270744	ACCTTAGAAGAGACATGCTATCAATTT	58.729	33.333	0.00	0.00	0.00	1.82
2084	3617	9.118300	CCTTAGAAGAGACATGCTATCAATTTT	57.882	33.333	0.00	0.00	0.00	1.82
2313	3910	1.190763	CTCAAAAACCACGACGTACCG	59.809	52.381	0.00	0.00	0.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
296	299	7.043391	GCACCAAGTGAAGTAATTCAAAAAGAC	60.043	37.037	7.26	0.00	35.23	3.01
374	377	7.882791	CCTAGTGTATAATGTATCCATGGCAAA	59.117	37.037	6.96	0.00	0.00	3.68
375	378	7.236640	TCCTAGTGTATAATGTATCCATGGCAA	59.763	37.037	6.96	0.00	0.00	4.52
376	379	6.728632	TCCTAGTGTATAATGTATCCATGGCA	59.271	38.462	6.96	0.00	0.00	4.92
459	463	8.815912	TGCTATAACTGCTATGATCTTGGAATA	58.184	33.333	0.00	0.00	0.00	1.75
544	549	5.007234	CGCGATTGTTGGAAATATGACCTAA	59.993	40.000	0.00	0.00	0.00	2.69
708	714	8.533657	TCATTGATGGATTATTTTCTGCTGTTT	58.466	29.630	0.00	0.00	0.00	2.83
930	943	3.266772	TGTAGCTTGGGGATCAATCAAGT	59.733	43.478	17.32	10.39	39.80	3.16
1020	2537	2.268920	GTGGCGGCAATGAGGAGA	59.731	61.111	15.50	0.00	0.00	3.71
1024	2541	1.210931	CAACAGTGGCGGCAATGAG	59.789	57.895	40.14	28.10	0.00	2.90
1044	2561	1.077716	GGCAACGGGATAAGCCACT	60.078	57.895	0.00	0.00	46.26	4.00
1067	2584	0.689745	ATACCAGGCTACTTGGGCGA	60.690	55.000	0.56	0.00	36.85	5.54
1209	2729	2.209273	TGATATTTCACACCGGCATCG	58.791	47.619	0.00	0.00	0.00	3.84
1316	2836	1.512735	GGGGCTAAAGGAGATGAGGT	58.487	55.000	0.00	0.00	0.00	3.85
1503	3025	0.980231	TGCACCAGGTTGCCCTTTTT	60.980	50.000	10.46	0.00	42.25	1.94
1504	3026	0.763986	ATGCACCAGGTTGCCCTTTT	60.764	50.000	10.46	0.00	42.25	2.27
1505	3027	1.152269	ATGCACCAGGTTGCCCTTT	60.152	52.632	10.46	0.00	42.25	3.11
1506	3028	1.909781	CATGCACCAGGTTGCCCTT	60.910	57.895	10.46	0.00	42.25	3.95
1507	3029	1.788518	TACATGCACCAGGTTGCCCT	61.789	55.000	10.46	0.00	42.25	5.19
1508	3030	1.304052	TACATGCACCAGGTTGCCC	60.304	57.895	10.46	0.00	42.25	5.36
1509	3031	1.937546	GCTACATGCACCAGGTTGCC	61.938	60.000	10.46	0.00	39.88	4.52
1510	3032	0.962356	AGCTACATGCACCAGGTTGC	60.962	55.000	8.03	8.03	44.17	4.17
1511	3033	1.089920	GAGCTACATGCACCAGGTTG	58.910	55.000	0.00	0.00	45.94	3.77
1512	3034	3.558674	GAGCTACATGCACCAGGTT	57.441	52.632	0.00	0.00	45.94	3.50
1537	3059	4.785453	CTTCCCTGGACCCTGCGC	62.785	72.222	0.00	0.00	0.00	6.09
1538	3060	4.101448	CCTTCCCTGGACCCTGCG	62.101	72.222	0.00	0.00	0.00	5.18
1539	3061	3.732849	CCCTTCCCTGGACCCTGC	61.733	72.222	0.00	0.00	0.00	4.85
1540	3062	2.204151	ACCCTTCCCTGGACCCTG	60.204	66.667	0.00	0.00	0.00	4.45
1541	3063	2.125225	GACCCTTCCCTGGACCCT	59.875	66.667	0.00	0.00	0.00	4.34
1542	3064	3.015753	GGACCCTTCCCTGGACCC	61.016	72.222	0.00	0.00	35.57	4.46
1543	3065	3.400054	CGGACCCTTCCCTGGACC	61.400	72.222	0.00	0.00	38.99	4.46
1544	3066	2.284405	TCGGACCCTTCCCTGGAC	60.284	66.667	0.00	0.00	38.99	4.02
1545	3067	2.284405	GTCGGACCCTTCCCTGGA	60.284	66.667	0.00	0.00	38.99	3.86
1546	3068	3.400054	GGTCGGACCCTTCCCTGG	61.400	72.222	16.55	0.00	38.99	4.45
1547	3069	2.606519	TGGTCGGACCCTTCCCTG	60.607	66.667	23.81	0.00	38.99	4.45
1548	3070	2.606826	GTGGTCGGACCCTTCCCT	60.607	66.667	23.81	0.00	38.99	4.20
1549	3071	1.775934	AAAGTGGTCGGACCCTTCCC	61.776	60.000	23.81	7.17	38.99	3.97
1550	3072	0.605589	CAAAGTGGTCGGACCCTTCC	60.606	60.000	23.81	9.51	37.50	3.46
1551	3073	0.605589	CCAAAGTGGTCGGACCCTTC	60.606	60.000	23.81	13.97	37.50	3.46
1552	3074	1.454539	CCAAAGTGGTCGGACCCTT	59.545	57.895	23.81	21.08	37.50	3.95
1553	3075	2.526046	CCCAAAGTGGTCGGACCCT	61.526	63.158	23.81	16.82	37.50	4.34
1554	3076	2.033602	CCCAAAGTGGTCGGACCC	59.966	66.667	23.81	14.91	37.50	4.46
1555	3077	1.302271	GACCCAAAGTGGTCGGACC	60.302	63.158	20.36	20.36	44.98	4.46
1556	3078	4.373771	GACCCAAAGTGGTCGGAC	57.626	61.111	0.00	0.00	44.98	4.79
1569	3091	6.152661	TGTTGACAATTTAATGATGGAGACCC	59.847	38.462	0.00	0.00	0.00	4.46
1570	3092	7.156876	TGTTGACAATTTAATGATGGAGACC	57.843	36.000	0.00	0.00	0.00	3.85
1606	3129	3.702792	TGACAACCAGTTTTTCTTCCCA	58.297	40.909	0.00	0.00	0.00	4.37
1607	3130	4.099419	ACATGACAACCAGTTTTTCTTCCC	59.901	41.667	0.00	0.00	0.00	3.97
1639	3162	7.553334	AGTTCAGTATAATGCCGAGAAAAGTA	58.447	34.615	0.00	0.00	0.00	2.24
1667	3190	0.314935	ACCAAGAAATTGCACGCCAG	59.685	50.000	0.00	0.00	0.00	4.85
1712	3235	2.024022	GCGCAACAAAGTGCACGA	59.976	55.556	12.01	0.00	45.19	4.35
1722	3245	1.459209	CGAGTGAATAACAGCGCAACA	59.541	47.619	11.47	0.00	0.00	3.33
1730	3253	6.884832	AGATTAATCCCACGAGTGAATAACA	58.115	36.000	11.92	0.00	0.00	2.41
1734	3257	5.600484	AGAGAGATTAATCCCACGAGTGAAT	59.400	40.000	11.92	0.00	0.00	2.57
1846	3370	8.153221	TCCAACGGTATCCCAATACAATATAT	57.847	34.615	0.00	0.00	39.69	0.86
1861	3385	5.367945	ACAAATACCATCTCCAACGGTAT	57.632	39.130	0.00	0.00	45.79	2.73
1874	3398	6.040391	CCACTCTCCTTTCAAAACAAATACCA	59.960	38.462	0.00	0.00	0.00	3.25
1899	3423	2.067013	GGAACCACGCTAGAACAAGTC	58.933	52.381	0.00	0.00	0.00	3.01
1922	3453	2.163412	TGACAATAAAGCCGGAACATGC	59.837	45.455	5.05	0.00	0.00	4.06
1929	3460	4.142182	ACCATTGATTGACAATAAAGCCGG	60.142	41.667	0.00	0.00	46.01	6.13
1953	3484	1.671054	CCGACGGGCTCACACAATT	60.671	57.895	5.81	0.00	0.00	2.32
2284	3881	2.608546	CGTGGTTTTTGAGTCGGTTGTA	59.391	45.455	0.00	0.00	0.00	2.41
2313	3910	3.099141	TCCCAAGATTTTTGATGCTCCC	58.901	45.455	0.00	0.00	0.00	4.30

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.