Multiple sequence alignment - TraesCS7A01G395100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G395100 chr7A 100.000 2372 0 0 1 2372 573449555 573451926 0.000000e+00 4381.0
1 TraesCS7A01G395100 chr7D 93.895 1638 77 14 743 2372 506095586 506097208 0.000000e+00 2449.0
2 TraesCS7A01G395100 chr7D 88.599 421 40 7 1 415 506032578 506032996 2.720000e-139 505.0
3 TraesCS7A01G395100 chr7D 92.437 119 9 0 421 539 506033049 506033167 1.130000e-38 171.0
4 TraesCS7A01G395100 chr7D 91.549 71 4 1 1052 1120 89279795 89279725 1.940000e-16 97.1
5 TraesCS7A01G395100 chr7B 89.647 1333 75 22 417 1706 533845399 533846711 0.000000e+00 1639.0
6 TraesCS7A01G395100 chr7B 92.276 246 12 4 1 246 533843540 533843778 2.260000e-90 342.0
7 TraesCS7A01G395100 chr7B 85.714 196 21 5 1742 1935 533846818 533847008 1.440000e-47 200.0
8 TraesCS7A01G395100 chr7B 85.870 184 17 5 232 415 533845176 533845350 1.120000e-43 187.0
9 TraesCS7A01G395100 chr2B 81.690 71 7 5 2044 2110 460179560 460179628 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G395100 chr7A 573449555 573451926 2371 False 4381 4381 100.00000 1 2372 1 chr7A.!!$F1 2371
1 TraesCS7A01G395100 chr7D 506095586 506097208 1622 False 2449 2449 93.89500 743 2372 1 chr7D.!!$F1 1629
2 TraesCS7A01G395100 chr7D 506032578 506033167 589 False 338 505 90.51800 1 539 2 chr7D.!!$F2 538
3 TraesCS7A01G395100 chr7B 533843540 533847008 3468 False 592 1639 88.37675 1 1935 4 chr7B.!!$F1 1934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 1747 0.032117 TCCATCCCTGTCCTCGTCAT 60.032 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 3207 0.396435 TTTCGTGATGTCAGGGCAGT 59.604 50.0 3.22 0.0 33.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 5.817296 GTGGTATGTCATGTCAAATGCTCTA 59.183 40.000 0.00 0.00 0.00 2.43
30 32 4.898320 TGTCATGTCAAATGCTCTAGTGT 58.102 39.130 0.00 0.00 0.00 3.55
133 135 5.618056 TTTGCAAGAATCTCACATCTCAC 57.382 39.130 0.00 0.00 0.00 3.51
151 153 0.686112 ACTAGTCAGCCTCAGCCTCC 60.686 60.000 0.00 0.00 41.25 4.30
152 154 0.685785 CTAGTCAGCCTCAGCCTCCA 60.686 60.000 0.00 0.00 41.25 3.86
153 155 0.685785 TAGTCAGCCTCAGCCTCCAG 60.686 60.000 0.00 0.00 41.25 3.86
154 156 3.397439 TCAGCCTCAGCCTCCAGC 61.397 66.667 0.00 0.00 41.25 4.85
155 157 4.486503 CAGCCTCAGCCTCCAGCC 62.487 72.222 0.00 0.00 45.47 4.85
156 158 4.737476 AGCCTCAGCCTCCAGCCT 62.737 66.667 0.00 0.00 45.47 4.58
157 159 4.173924 GCCTCAGCCTCCAGCCTC 62.174 72.222 0.00 0.00 45.47 4.70
158 160 2.686470 CCTCAGCCTCCAGCCTCA 60.686 66.667 0.00 0.00 45.47 3.86
159 161 2.733669 CCTCAGCCTCCAGCCTCAG 61.734 68.421 0.00 0.00 45.47 3.35
160 162 1.685077 CTCAGCCTCCAGCCTCAGA 60.685 63.158 0.00 0.00 45.47 3.27
164 166 0.619832 AGCCTCCAGCCTCAGATTGA 60.620 55.000 0.00 0.00 45.47 2.57
165 167 0.463474 GCCTCCAGCCTCAGATTGAC 60.463 60.000 0.00 0.00 34.35 3.18
187 193 5.918608 ACAACATAGCCTATGGAAGTAGTG 58.081 41.667 15.83 5.03 40.47 2.74
206 212 1.000827 TGGCATTTTACAAGTGGTGCG 60.001 47.619 0.00 0.00 33.62 5.34
207 213 1.059942 GCATTTTACAAGTGGTGCGC 58.940 50.000 0.00 0.00 0.00 6.09
278 1696 0.687920 TACAGCCCACACATTTCCGA 59.312 50.000 0.00 0.00 0.00 4.55
289 1707 2.358898 CACATTTCCGACAATGGGGATC 59.641 50.000 10.25 0.00 38.32 3.36
297 1715 2.224066 CGACAATGGGGATCACCTAGAC 60.224 54.545 16.81 4.57 40.03 2.59
317 1735 1.202770 CGGGTATTGGACTTCCATCCC 60.203 57.143 17.15 17.15 46.97 3.85
327 1745 0.461961 CTTCCATCCCTGTCCTCGTC 59.538 60.000 0.00 0.00 0.00 4.20
329 1747 0.032117 TCCATCCCTGTCCTCGTCAT 60.032 55.000 0.00 0.00 0.00 3.06
355 1773 0.107508 CTCATGCACATCCCCGTCTT 60.108 55.000 0.00 0.00 0.00 3.01
391 1809 5.106078 GCGGTGATAAAAACTTTACCATCCA 60.106 40.000 0.00 0.00 0.00 3.41
398 1816 6.933514 AAAAACTTTACCATCCATGTCCAT 57.066 33.333 0.00 0.00 0.00 3.41
415 1833 2.041081 TCCATGTCGGGTTTTTCATCCT 59.959 45.455 0.00 0.00 34.36 3.24
490 1955 3.888930 GGCATATTTTGTGGCTAGGCTAA 59.111 43.478 18.18 9.88 38.91 3.09
509 1974 5.753438 GGCTAAGGTTTTCTTTGTCCTTTTG 59.247 40.000 0.00 0.00 40.26 2.44
523 1988 0.037419 CTTTTGGGGCCAAATGGTCG 60.037 55.000 4.39 0.00 44.14 4.79
540 2005 2.949644 GGTCGGGATGGGTAGAAATTTG 59.050 50.000 0.00 0.00 0.00 2.32
546 2011 3.627237 GGATGGGTAGAAATTTGGCTGGA 60.627 47.826 0.00 0.00 0.00 3.86
547 2012 3.534357 TGGGTAGAAATTTGGCTGGAA 57.466 42.857 0.00 0.00 0.00 3.53
553 2018 5.185828 GGTAGAAATTTGGCTGGAAATGAGT 59.814 40.000 0.00 0.00 0.00 3.41
556 2021 2.673775 TTTGGCTGGAAATGAGTGGA 57.326 45.000 0.00 0.00 0.00 4.02
559 2024 2.956132 TGGCTGGAAATGAGTGGAAAA 58.044 42.857 0.00 0.00 0.00 2.29
569 2034 1.005450 TGAGTGGAAAATACCTGGGGC 59.995 52.381 0.00 0.00 0.00 5.80
570 2035 1.285078 GAGTGGAAAATACCTGGGGCT 59.715 52.381 0.00 0.00 0.00 5.19
580 2045 0.704076 ACCTGGGGCTTGCTGAATTA 59.296 50.000 0.00 0.00 0.00 1.40
595 2060 8.962884 TTGCTGAATTAGAGCTCACATATAAA 57.037 30.769 17.77 0.00 37.35 1.40
597 2062 7.172190 TGCTGAATTAGAGCTCACATATAAAGC 59.828 37.037 17.77 14.47 37.35 3.51
601 2066 8.986929 AATTAGAGCTCACATATAAAGCCTTT 57.013 30.769 17.77 0.00 36.69 3.11
603 2068 8.888579 TTAGAGCTCACATATAAAGCCTTTAC 57.111 34.615 17.77 0.00 36.69 2.01
604 2069 5.986135 AGAGCTCACATATAAAGCCTTTACG 59.014 40.000 17.77 0.00 36.69 3.18
605 2070 5.057149 AGCTCACATATAAAGCCTTTACGG 58.943 41.667 0.00 0.00 36.69 4.02
606 2071 5.054477 GCTCACATATAAAGCCTTTACGGA 58.946 41.667 0.00 0.00 33.16 4.69
622 2087 2.178580 ACGGATAAAGTGGGTAACGGA 58.821 47.619 0.00 0.00 37.60 4.69
646 2119 4.164981 ACGGGTAATGCTATTCTATCCCA 58.835 43.478 0.00 0.00 33.92 4.37
650 2123 5.398012 GGGTAATGCTATTCTATCCCATCCC 60.398 48.000 0.00 0.00 34.39 3.85
687 2160 5.189145 TGGGTAAGGTATCCAAGAGTTTCTC 59.811 44.000 0.00 0.00 35.61 2.87
694 2167 2.416747 TCCAAGAGTTTCTCATGTGCG 58.583 47.619 0.00 0.00 32.06 5.34
717 2191 6.237861 GCGTTAAACTAGTTCATCCATGTCTC 60.238 42.308 8.95 0.00 0.00 3.36
723 2197 7.904558 ACTAGTTCATCCATGTCTCTAATCA 57.095 36.000 0.00 0.00 0.00 2.57
724 2198 8.489676 ACTAGTTCATCCATGTCTCTAATCAT 57.510 34.615 0.00 0.00 0.00 2.45
725 2199 8.932610 ACTAGTTCATCCATGTCTCTAATCATT 58.067 33.333 0.00 0.00 0.00 2.57
768 2242 1.221021 GGGAAGCGGGTAAGGACTG 59.779 63.158 0.00 0.00 0.00 3.51
967 2443 1.468520 CCCCATTTGTACACAGCTTCG 59.531 52.381 0.00 0.00 0.00 3.79
1272 2748 1.110442 CGGCAGAGAGGAATCAGAGT 58.890 55.000 0.00 0.00 0.00 3.24
1326 2802 3.122297 GGAGTTCATCAAGAGCAGATCG 58.878 50.000 0.00 0.00 0.00 3.69
1333 2809 1.671328 TCAAGAGCAGATCGACCTACG 59.329 52.381 0.00 0.00 44.09 3.51
1412 2888 5.869579 TCTTTATGGTGAAGTTTCTGCTCT 58.130 37.500 0.00 0.00 0.00 4.09
1427 2903 5.705609 TCTGCTCTTGGAATTGGTTTTAC 57.294 39.130 0.00 0.00 0.00 2.01
1505 2985 9.872757 TTACATGATTAGTTCTCGAAACAAAAC 57.127 29.630 0.00 1.35 0.00 2.43
1506 2986 7.925993 ACATGATTAGTTCTCGAAACAAAACA 58.074 30.769 0.00 7.52 0.00 2.83
1507 2987 8.402472 ACATGATTAGTTCTCGAAACAAAACAA 58.598 29.630 0.00 1.41 0.00 2.83
1508 2988 9.232082 CATGATTAGTTCTCGAAACAAAACAAA 57.768 29.630 11.33 0.45 0.00 2.83
1563 3043 3.136626 AGATTAGGCGCCCTAGTTCAAAT 59.863 43.478 26.15 9.96 37.42 2.32
1567 3047 1.140252 GGCGCCCTAGTTCAAATAGGA 59.860 52.381 18.11 0.00 42.15 2.94
1626 3133 4.201910 TGCTTCGTCTTCTTTTGTTCTTGG 60.202 41.667 0.00 0.00 0.00 3.61
1712 3223 2.393768 GCACTGCCCTGACATCACG 61.394 63.158 0.00 0.00 0.00 4.35
1762 3355 6.842163 AGATATTTGTAAGTTTCGGTGCTTG 58.158 36.000 0.00 0.00 0.00 4.01
2168 3764 8.529102 CGAATGATTTTCTTAGTTGCATGAATG 58.471 33.333 0.00 0.00 0.00 2.67
2216 3812 9.804758 TTTTAATTAATAAGTAAATGCCACGGG 57.195 29.630 6.50 0.00 31.91 5.28
2242 3838 6.993786 TTTCACGGCAATACTCATGATTTA 57.006 33.333 0.00 0.00 0.00 1.40
2246 3842 4.141482 ACGGCAATACTCATGATTTAGGGT 60.141 41.667 0.00 0.00 0.00 4.34
2295 3891 5.148502 AGGATCTAGTTACGGGATTCACAT 58.851 41.667 0.00 0.00 0.00 3.21
2346 3942 7.393216 TCCGTCTTAGAGGTAATATCCTACTC 58.607 42.308 1.20 0.00 38.02 2.59
2347 3943 7.237263 TCCGTCTTAGAGGTAATATCCTACTCT 59.763 40.741 1.20 0.00 38.02 3.24
2348 3944 7.884354 CCGTCTTAGAGGTAATATCCTACTCTT 59.116 40.741 0.00 0.00 38.02 2.85
2350 3946 8.517056 GTCTTAGAGGTAATATCCTACTCTTGC 58.483 40.741 0.00 0.00 38.02 4.01
2351 3947 8.449625 TCTTAGAGGTAATATCCTACTCTTGCT 58.550 37.037 0.00 0.00 38.02 3.91
2352 3948 6.909550 AGAGGTAATATCCTACTCTTGCTG 57.090 41.667 0.00 0.00 38.02 4.41
2353 3949 6.615617 AGAGGTAATATCCTACTCTTGCTGA 58.384 40.000 0.00 0.00 38.02 4.26
2354 3950 6.719370 AGAGGTAATATCCTACTCTTGCTGAG 59.281 42.308 5.89 5.89 42.10 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 9.310449 AGATCTACTAGACTTTTTGTGTCCTTA 57.690 33.333 0.00 0.00 35.21 2.69
100 102 7.274250 GTGAGATTCTTGCAAATACAATGGAAC 59.726 37.037 0.00 0.00 0.00 3.62
133 135 0.685785 TGGAGGCTGAGGCTGACTAG 60.686 60.000 15.18 0.00 38.98 2.57
151 153 3.311871 GCTATGTTGTCAATCTGAGGCTG 59.688 47.826 0.00 0.00 0.00 4.85
152 154 3.539604 GCTATGTTGTCAATCTGAGGCT 58.460 45.455 0.00 0.00 0.00 4.58
153 155 2.615912 GGCTATGTTGTCAATCTGAGGC 59.384 50.000 0.00 0.00 0.00 4.70
154 156 4.148128 AGGCTATGTTGTCAATCTGAGG 57.852 45.455 0.00 0.00 0.00 3.86
155 157 5.699915 CCATAGGCTATGTTGTCAATCTGAG 59.300 44.000 27.86 8.52 34.36 3.35
156 158 5.366477 TCCATAGGCTATGTTGTCAATCTGA 59.634 40.000 27.86 14.01 34.36 3.27
157 159 5.614308 TCCATAGGCTATGTTGTCAATCTG 58.386 41.667 27.86 12.21 34.36 2.90
158 160 5.894298 TCCATAGGCTATGTTGTCAATCT 57.106 39.130 27.86 0.00 34.36 2.40
159 161 6.058183 ACTTCCATAGGCTATGTTGTCAATC 58.942 40.000 27.86 0.00 34.36 2.67
160 162 6.006275 ACTTCCATAGGCTATGTTGTCAAT 57.994 37.500 27.86 8.40 34.36 2.57
164 166 5.163301 CCACTACTTCCATAGGCTATGTTGT 60.163 44.000 27.86 23.43 34.36 3.32
165 167 5.300752 CCACTACTTCCATAGGCTATGTTG 58.699 45.833 27.86 19.98 34.36 3.33
187 193 1.696988 CGCACCACTTGTAAAATGCC 58.303 50.000 0.00 0.00 0.00 4.40
206 212 5.183904 ACTCATGAGGTTTGTAGGAAAATGC 59.816 40.000 26.08 0.00 0.00 3.56
207 213 6.824305 ACTCATGAGGTTTGTAGGAAAATG 57.176 37.500 26.08 0.00 0.00 2.32
261 1679 0.888736 TGTCGGAAATGTGTGGGCTG 60.889 55.000 0.00 0.00 0.00 4.85
278 1696 1.762957 CGTCTAGGTGATCCCCATTGT 59.237 52.381 0.00 0.00 0.00 2.71
289 1707 2.385803 AGTCCAATACCCGTCTAGGTG 58.614 52.381 0.00 0.00 41.42 4.00
317 1735 0.671251 GGAGCCTATGACGAGGACAG 59.329 60.000 0.00 0.00 39.15 3.51
327 1745 2.424557 GATGTGCATGAGGAGCCTATG 58.575 52.381 0.00 0.00 0.00 2.23
329 1747 0.761187 GGATGTGCATGAGGAGCCTA 59.239 55.000 0.00 0.00 0.00 3.93
355 1773 3.770040 CACCGCGGACCAGGATGA 61.770 66.667 35.90 0.00 39.69 2.92
391 1809 2.870175 TGAAAAACCCGACATGGACAT 58.130 42.857 0.00 0.00 42.00 3.06
398 1816 3.146066 CTGAAGGATGAAAAACCCGACA 58.854 45.455 0.00 0.00 0.00 4.35
437 1902 8.307921 TGCGTTACATGTTGTTTATTGTACTA 57.692 30.769 2.30 0.00 0.00 1.82
440 1905 9.464714 AAAATGCGTTACATGTTGTTTATTGTA 57.535 25.926 2.30 0.00 39.60 2.41
442 1907 8.625023 CAAAATGCGTTACATGTTGTTTATTG 57.375 30.769 2.30 0.00 45.47 1.90
490 1955 3.454447 CCCCAAAAGGACAAAGAAAACCT 59.546 43.478 0.00 0.00 38.24 3.50
509 1974 3.373932 ATCCCGACCATTTGGCCCC 62.374 63.158 0.00 0.00 39.32 5.80
523 1988 2.695147 CAGCCAAATTTCTACCCATCCC 59.305 50.000 0.00 0.00 0.00 3.85
540 2005 4.142160 GGTATTTTCCACTCATTTCCAGCC 60.142 45.833 0.00 0.00 0.00 4.85
546 2011 4.352893 CCCCAGGTATTTTCCACTCATTT 58.647 43.478 0.00 0.00 0.00 2.32
547 2012 3.881713 GCCCCAGGTATTTTCCACTCATT 60.882 47.826 0.00 0.00 0.00 2.57
553 2018 1.894978 GCAAGCCCCAGGTATTTTCCA 60.895 52.381 0.00 0.00 0.00 3.53
556 2021 1.077005 TCAGCAAGCCCCAGGTATTTT 59.923 47.619 0.00 0.00 0.00 1.82
559 2024 0.929244 ATTCAGCAAGCCCCAGGTAT 59.071 50.000 0.00 0.00 0.00 2.73
569 2034 8.599055 TTATATGTGAGCTCTAATTCAGCAAG 57.401 34.615 16.19 0.00 39.56 4.01
570 2035 8.962884 TTTATATGTGAGCTCTAATTCAGCAA 57.037 30.769 16.19 0.00 39.56 3.91
580 2045 5.986135 CGTAAAGGCTTTATATGTGAGCTCT 59.014 40.000 21.59 0.00 36.66 4.09
601 2066 3.360867 TCCGTTACCCACTTTATCCGTA 58.639 45.455 0.00 0.00 0.00 4.02
603 2068 2.965572 TCCGTTACCCACTTTATCCG 57.034 50.000 0.00 0.00 0.00 4.18
604 2069 4.301628 CGTATCCGTTACCCACTTTATCC 58.698 47.826 0.00 0.00 0.00 2.59
605 2070 4.301628 CCGTATCCGTTACCCACTTTATC 58.698 47.826 0.00 0.00 0.00 1.75
606 2071 3.070015 CCCGTATCCGTTACCCACTTTAT 59.930 47.826 0.00 0.00 0.00 1.40
622 2087 5.962031 TGGGATAGAATAGCATTACCCGTAT 59.038 40.000 0.00 0.00 38.96 3.06
643 2116 0.398664 AGAGGTAAGACGGGGATGGG 60.399 60.000 0.00 0.00 0.00 4.00
646 2119 1.497161 CCAAGAGGTAAGACGGGGAT 58.503 55.000 0.00 0.00 0.00 3.85
668 2141 6.176183 CACATGAGAAACTCTTGGATACCTT 58.824 40.000 0.00 0.00 39.13 3.50
670 2143 4.333926 GCACATGAGAAACTCTTGGATACC 59.666 45.833 0.00 0.00 39.13 2.73
679 2152 5.344207 AGTTTAACGCACATGAGAAACTC 57.656 39.130 0.00 0.00 33.05 3.01
680 2153 5.989777 ACTAGTTTAACGCACATGAGAAACT 59.010 36.000 0.00 6.34 39.66 2.66
682 2155 6.480651 TGAACTAGTTTAACGCACATGAGAAA 59.519 34.615 10.02 0.00 0.00 2.52
687 2160 5.121611 TGGATGAACTAGTTTAACGCACATG 59.878 40.000 10.02 0.00 0.00 3.21
694 2167 9.871238 TTAGAGACATGGATGAACTAGTTTAAC 57.129 33.333 10.02 4.27 0.00 2.01
726 2200 9.533831 CCCTATGGGCAATTACTCTATTTATTT 57.466 33.333 0.00 0.00 35.35 1.40
727 2201 8.900802 TCCCTATGGGCAATTACTCTATTTATT 58.099 33.333 0.00 0.00 43.94 1.40
728 2202 8.463055 TCCCTATGGGCAATTACTCTATTTAT 57.537 34.615 0.00 0.00 43.94 1.40
729 2203 7.881912 TCCCTATGGGCAATTACTCTATTTA 57.118 36.000 0.00 0.00 43.94 1.40
730 2204 6.780198 TCCCTATGGGCAATTACTCTATTT 57.220 37.500 0.00 0.00 43.94 1.40
731 2205 6.748332 GCTTCCCTATGGGCAATTACTCTATT 60.748 42.308 0.00 0.00 43.94 1.73
732 2206 5.280727 GCTTCCCTATGGGCAATTACTCTAT 60.281 44.000 0.00 0.00 43.94 1.98
733 2207 4.041691 GCTTCCCTATGGGCAATTACTCTA 59.958 45.833 0.00 0.00 43.94 2.43
743 2217 1.702022 TTACCCGCTTCCCTATGGGC 61.702 60.000 0.00 0.00 46.02 5.36
768 2242 8.905702 GTTATTCAACATATTTCGGCAATGATC 58.094 33.333 0.00 0.00 34.60 2.92
844 2320 2.439156 GAGTGGGATGTGGCAGGC 60.439 66.667 0.00 0.00 0.00 4.85
933 2409 5.319453 ACAAATGGGGTATATGATGAGCTG 58.681 41.667 0.00 0.00 0.00 4.24
946 2422 2.514803 GAAGCTGTGTACAAATGGGGT 58.485 47.619 0.00 0.00 0.00 4.95
1217 2693 3.771160 AGCTACCGCCAAGGGACG 61.771 66.667 0.00 0.00 46.96 4.79
1272 2748 1.344065 TGGCCTCGTTGTAGAAGGAA 58.656 50.000 3.32 0.00 0.00 3.36
1326 2802 1.805945 CTTCGCAGGCACGTAGGTC 60.806 63.158 0.00 0.00 0.00 3.85
1333 2809 1.869767 CTTATCATCCTTCGCAGGCAC 59.130 52.381 0.00 0.00 40.58 5.01
1377 2853 7.657761 ACTTCACCATAAAGAAAGACTACACAG 59.342 37.037 0.00 0.00 0.00 3.66
1472 2949 9.863845 TTCGAGAACTAATCATGTAAACATACA 57.136 29.630 0.00 0.00 34.26 2.29
1532 3012 4.729868 AGGGCGCCTAATCTTGATTAATT 58.270 39.130 28.56 0.00 28.47 1.40
1533 3013 4.373156 AGGGCGCCTAATCTTGATTAAT 57.627 40.909 28.56 0.00 28.47 1.40
1543 3023 3.577805 ATTTGAACTAGGGCGCCTAAT 57.422 42.857 28.56 15.39 35.49 1.73
1696 3207 0.396435 TTTCGTGATGTCAGGGCAGT 59.604 50.000 3.22 0.00 33.00 4.40
1701 3212 6.615088 AGAAATGAATTTTCGTGATGTCAGG 58.385 36.000 0.00 0.00 46.89 3.86
1786 3379 2.363680 TGTGTTTGCCCACGATCATTTT 59.636 40.909 0.00 0.00 38.20 1.82
2128 3724 8.737175 AGAAAATCATTCGCTGCATATAATGAT 58.263 29.630 17.94 17.94 46.05 2.45
2130 3726 8.738199 AAGAAAATCATTCGCTGCATATAATG 57.262 30.769 0.00 4.29 0.00 1.90
2139 3735 5.393124 TGCAACTAAGAAAATCATTCGCTG 58.607 37.500 0.00 0.00 0.00 5.18
2194 3790 6.130569 TCCCCGTGGCATTTACTTATTAATT 58.869 36.000 0.00 0.00 0.00 1.40
2203 3799 2.096248 TGAAATCCCCGTGGCATTTAC 58.904 47.619 0.00 0.00 0.00 2.01
2210 3806 3.131478 GCCGTGAAATCCCCGTGG 61.131 66.667 0.00 0.00 0.00 4.94
2216 3812 3.876914 TCATGAGTATTGCCGTGAAATCC 59.123 43.478 0.00 0.00 0.00 3.01
2223 3819 4.141482 ACCCTAAATCATGAGTATTGCCGT 60.141 41.667 0.09 0.00 0.00 5.68
2242 3838 2.562738 GCCTTGCTTCACAAAATACCCT 59.437 45.455 0.00 0.00 37.96 4.34
2246 3842 1.611006 TGCGCCTTGCTTCACAAAATA 59.389 42.857 4.18 0.00 46.63 1.40
2295 3891 3.449737 CCCGAACCTAGGTAAATCACTCA 59.550 47.826 16.67 0.00 0.00 3.41
2347 3943 4.883585 AGACTTGATGAAAACACTCAGCAA 59.116 37.500 4.44 4.44 46.46 3.91
2348 3944 4.454678 AGACTTGATGAAAACACTCAGCA 58.545 39.130 0.00 0.00 39.85 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.