Multiple sequence alignment - TraesCS7A01G394800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G394800 chr7A 100.000 5411 0 0 1 5411 573098485 573093075 0.000000e+00 9993.0
1 TraesCS7A01G394800 chr7A 75.510 245 35 15 1484 1705 303102172 303101930 4.460000e-16 97.1
2 TraesCS7A01G394800 chr7A 97.059 34 1 0 5000 5033 105766417 105766450 2.110000e-04 58.4
3 TraesCS7A01G394800 chr7B 89.030 5196 293 116 2 5082 533572019 533566986 0.000000e+00 6181.0
4 TraesCS7A01G394800 chr7B 93.103 232 14 2 5139 5369 533566987 533566757 6.710000e-89 339.0
5 TraesCS7A01G394800 chr7B 75.918 245 34 15 1484 1705 268454509 268454751 9.590000e-18 102.0
6 TraesCS7A01G394800 chr7D 90.476 1764 81 36 3354 5082 505601486 505599775 0.000000e+00 2246.0
7 TraesCS7A01G394800 chr7D 93.196 1117 47 16 2166 3274 505602962 505601867 0.000000e+00 1615.0
8 TraesCS7A01G394800 chr7D 83.380 1781 118 91 134 1839 505604932 505603255 0.000000e+00 1485.0
9 TraesCS7A01G394800 chr7D 93.939 231 14 0 5139 5369 505599776 505599546 3.100000e-92 350.0
10 TraesCS7A01G394800 chr7D 91.489 235 11 3 1846 2073 505603208 505602976 1.130000e-81 315.0
11 TraesCS7A01G394800 chr7D 88.889 63 6 1 5081 5142 182833554 182833492 5.810000e-10 76.8
12 TraesCS7A01G394800 chr7D 89.286 56 5 1 5080 5134 173713005 173713060 9.730000e-08 69.4
13 TraesCS7A01G394800 chr6D 83.182 220 35 2 1484 1702 354223519 354223737 3.310000e-47 200.0
14 TraesCS7A01G394800 chr6B 82.960 223 36 2 1484 1705 524064489 524064268 3.310000e-47 200.0
15 TraesCS7A01G394800 chr6B 91.379 58 4 1 5078 5134 694400077 694400020 1.620000e-10 78.7
16 TraesCS7A01G394800 chr2D 82.589 224 37 2 1483 1705 557258875 557259097 4.280000e-46 196.0
17 TraesCS7A01G394800 chr2A 82.511 223 37 2 1484 1705 697290074 697290295 1.540000e-45 195.0
18 TraesCS7A01G394800 chr2B 81.328 241 40 5 1484 1721 664933892 664934130 1.990000e-44 191.0
19 TraesCS7A01G394800 chr2B 87.500 64 7 1 5080 5142 4635309 4635372 7.520000e-09 73.1
20 TraesCS7A01G394800 chr2B 87.302 63 7 1 5081 5142 549025613 549025551 2.700000e-08 71.3
21 TraesCS7A01G394800 chr2B 100.000 29 0 0 5002 5030 354942806 354942778 3.000000e-03 54.7
22 TraesCS7A01G394800 chr4B 95.833 48 1 1 5081 5127 27782823 27782870 5.810000e-10 76.8
23 TraesCS7A01G394800 chr4B 88.136 59 6 1 5077 5134 555241977 555242035 9.730000e-08 69.4
24 TraesCS7A01G394800 chr3B 89.286 56 5 1 5080 5134 152217016 152216961 9.730000e-08 69.4
25 TraesCS7A01G394800 chr1D 85.294 68 9 1 5076 5142 401160079 401160012 9.730000e-08 69.4
26 TraesCS7A01G394800 chrUn 100.000 29 0 0 5007 5035 355223511 355223483 3.000000e-03 54.7
27 TraesCS7A01G394800 chr5B 96.970 33 0 1 5005 5037 378439527 378439496 3.000000e-03 54.7
28 TraesCS7A01G394800 chr4D 100.000 29 0 0 5005 5033 106603752 106603724 3.000000e-03 54.7
29 TraesCS7A01G394800 chr3D 100.000 29 0 0 5005 5033 356527430 356527458 3.000000e-03 54.7
30 TraesCS7A01G394800 chr3D 100.000 29 0 0 5005 5033 360419916 360419888 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G394800 chr7A 573093075 573098485 5410 True 9993.0 9993 100.0000 1 5411 1 chr7A.!!$R2 5410
1 TraesCS7A01G394800 chr7B 533566757 533572019 5262 True 3260.0 6181 91.0665 2 5369 2 chr7B.!!$R1 5367
2 TraesCS7A01G394800 chr7D 505599546 505604932 5386 True 1202.2 2246 90.4960 134 5369 5 chr7D.!!$R2 5235

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 144 0.177836 GAGGAGAAGGAAGCCAGAGC 59.822 60.0 0.0 0.0 40.32 4.09 F
522 533 0.253394 AAGAGGAGGGAAAGGGGAGG 60.253 60.0 0.0 0.0 0.00 4.30 F
2084 2237 0.104304 AAAGCAGCCGTATCCTACCG 59.896 55.0 0.0 0.0 0.00 4.02 F
2358 2513 0.241213 GCTTTTCTTGCTTCCGTCCC 59.759 55.0 0.0 0.0 0.00 4.46 F
2645 2804 0.254178 CCCTGTCAAGCATAGCCAGT 59.746 55.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1579 0.172803 AACGACGTATCTGCACTCCC 59.827 55.0 0.0 0.0 0.00 4.30 R
2508 2666 0.251916 TGTGGTCCAAGCTAATCCCG 59.748 55.0 0.0 0.0 0.00 5.14 R
3902 4414 0.528924 TGTTATCCACCTGTCGTCGG 59.471 55.0 0.0 0.0 0.00 4.79 R
4069 4581 0.716108 CGTCAGTGAATGAAGCGACC 59.284 55.0 0.0 0.0 40.43 4.79 R
4481 4994 0.696143 TCAGTCCCAAGTCCCAACCA 60.696 55.0 0.0 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.827652 GAGAATGGCTCTTAGGGTTCG 58.172 52.381 0.00 0.00 40.61 3.95
25 26 2.431057 GAGAATGGCTCTTAGGGTTCGA 59.569 50.000 0.00 0.00 40.61 3.71
32 34 2.496470 GCTCTTAGGGTTCGAAGAGGAA 59.504 50.000 14.67 0.00 46.22 3.36
48 50 0.313987 GGAACGGTTGAGCAAAAGGG 59.686 55.000 0.00 0.00 0.00 3.95
53 55 2.100749 ACGGTTGAGCAAAAGGGAAAAG 59.899 45.455 0.00 0.00 0.00 2.27
58 60 3.283751 TGAGCAAAAGGGAAAAGAACGA 58.716 40.909 0.00 0.00 0.00 3.85
60 62 3.020984 AGCAAAAGGGAAAAGAACGACA 58.979 40.909 0.00 0.00 0.00 4.35
68 70 5.127491 AGGGAAAAGAACGACATAACACAA 58.873 37.500 0.00 0.00 0.00 3.33
95 98 2.427753 GATGATCGTGGCCTCCCC 59.572 66.667 3.32 0.00 0.00 4.81
108 111 1.144057 CTCCCCGCACTATCACACC 59.856 63.158 0.00 0.00 0.00 4.16
111 114 2.890474 CCGCACTATCACACCGGC 60.890 66.667 0.00 0.00 31.87 6.13
141 144 0.177836 GAGGAGAAGGAAGCCAGAGC 59.822 60.000 0.00 0.00 40.32 4.09
169 172 0.324460 CTCCTAGGGTTCAGACGGGT 60.324 60.000 9.46 0.00 0.00 5.28
189 192 0.413434 ATGGTTGGGGAAAAGGGAGG 59.587 55.000 0.00 0.00 0.00 4.30
209 214 2.525248 CGACGGCATAGTGCGCATT 61.525 57.895 15.91 13.31 46.21 3.56
211 216 0.316196 GACGGCATAGTGCGCATTTC 60.316 55.000 15.91 0.00 46.21 2.17
212 217 1.024046 ACGGCATAGTGCGCATTTCA 61.024 50.000 15.91 0.00 46.21 2.69
214 219 1.268692 CGGCATAGTGCGCATTTCATT 60.269 47.619 15.91 0.00 46.21 2.57
270 278 7.988904 TCATAAACAAACCAAAGTAAAACCG 57.011 32.000 0.00 0.00 0.00 4.44
329 338 1.287815 GCGGGGAAACGGAAAAAGG 59.712 57.895 0.00 0.00 0.00 3.11
344 354 4.260990 GGAAAAAGGCGATTTGTTTTTGGG 60.261 41.667 0.00 0.00 34.35 4.12
345 355 3.828875 AAAGGCGATTTGTTTTTGGGA 57.171 38.095 0.00 0.00 0.00 4.37
346 356 3.385193 AAGGCGATTTGTTTTTGGGAG 57.615 42.857 0.00 0.00 0.00 4.30
347 357 1.000843 AGGCGATTTGTTTTTGGGAGC 59.999 47.619 0.00 0.00 0.00 4.70
350 360 3.130633 GCGATTTGTTTTTGGGAGCTTT 58.869 40.909 0.00 0.00 0.00 3.51
351 361 4.303282 GCGATTTGTTTTTGGGAGCTTTA 58.697 39.130 0.00 0.00 0.00 1.85
352 362 4.385748 GCGATTTGTTTTTGGGAGCTTTAG 59.614 41.667 0.00 0.00 0.00 1.85
353 363 4.385748 CGATTTGTTTTTGGGAGCTTTAGC 59.614 41.667 0.00 0.00 42.49 3.09
354 364 3.744238 TTGTTTTTGGGAGCTTTAGCC 57.256 42.857 0.00 0.00 43.38 3.93
356 366 3.304829 TGTTTTTGGGAGCTTTAGCCTT 58.695 40.909 0.00 0.00 43.38 4.35
357 367 3.709141 TGTTTTTGGGAGCTTTAGCCTTT 59.291 39.130 0.00 0.00 43.38 3.11
358 368 4.896482 TGTTTTTGGGAGCTTTAGCCTTTA 59.104 37.500 0.00 0.00 43.38 1.85
359 369 5.010617 TGTTTTTGGGAGCTTTAGCCTTTAG 59.989 40.000 0.00 0.00 43.38 1.85
360 370 2.420058 TGGGAGCTTTAGCCTTTAGC 57.580 50.000 0.00 0.00 43.38 3.09
361 371 1.064685 TGGGAGCTTTAGCCTTTAGCC 60.065 52.381 0.00 0.00 45.47 3.93
362 372 1.064685 GGGAGCTTTAGCCTTTAGCCA 60.065 52.381 0.00 0.00 45.47 4.75
363 373 2.293170 GGAGCTTTAGCCTTTAGCCAG 58.707 52.381 0.00 0.00 45.47 4.85
364 374 1.673400 GAGCTTTAGCCTTTAGCCAGC 59.327 52.381 0.00 0.00 45.47 4.85
365 375 1.004745 AGCTTTAGCCTTTAGCCAGCA 59.995 47.619 0.00 0.00 45.47 4.41
402 412 0.798776 CACGTCTCTGATGCAAACCC 59.201 55.000 0.00 0.00 0.00 4.11
440 450 2.663852 CCACCGCTCCGTTTTCGT 60.664 61.111 0.00 0.00 42.35 3.85
488 499 3.139469 GTCCGTCCGTCCCTCTCC 61.139 72.222 0.00 0.00 0.00 3.71
489 500 3.654143 TCCGTCCGTCCCTCTCCA 61.654 66.667 0.00 0.00 0.00 3.86
494 505 1.110518 GTCCGTCCCTCTCCATCTCC 61.111 65.000 0.00 0.00 0.00 3.71
519 530 1.208706 GAGAAGAGGAGGGAAAGGGG 58.791 60.000 0.00 0.00 0.00 4.79
520 531 0.800239 AGAAGAGGAGGGAAAGGGGA 59.200 55.000 0.00 0.00 0.00 4.81
522 533 0.253394 AAGAGGAGGGAAAGGGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
523 534 2.286502 AGGAGGGAAAGGGGAGGC 60.287 66.667 0.00 0.00 0.00 4.70
524 535 2.614013 GGAGGGAAAGGGGAGGCA 60.614 66.667 0.00 0.00 0.00 4.75
525 536 2.009302 GGAGGGAAAGGGGAGGCAT 61.009 63.158 0.00 0.00 0.00 4.40
526 537 1.534203 GAGGGAAAGGGGAGGCATC 59.466 63.158 0.00 0.00 0.00 3.91
527 538 2.000825 GAGGGAAAGGGGAGGCATCC 62.001 65.000 9.46 9.46 45.85 3.51
562 586 8.880750 CGTCGATATATATCCGTGTCCATATAT 58.119 37.037 15.61 0.00 34.15 0.86
571 595 5.653507 TCCGTGTCCATATATAAATACCGC 58.346 41.667 0.00 0.00 0.00 5.68
573 597 5.747197 CCGTGTCCATATATAAATACCGCTC 59.253 44.000 0.00 0.00 0.00 5.03
574 598 5.747197 CGTGTCCATATATAAATACCGCTCC 59.253 44.000 0.00 0.00 0.00 4.70
576 600 6.757010 GTGTCCATATATAAATACCGCTCCTG 59.243 42.308 0.00 0.00 0.00 3.86
577 601 6.127168 TGTCCATATATAAATACCGCTCCTGG 60.127 42.308 0.00 0.00 0.00 4.45
578 602 6.097839 GTCCATATATAAATACCGCTCCTGGA 59.902 42.308 0.00 0.00 0.00 3.86
579 603 6.670464 TCCATATATAAATACCGCTCCTGGAA 59.330 38.462 0.00 0.00 0.00 3.53
580 604 7.347222 TCCATATATAAATACCGCTCCTGGAAT 59.653 37.037 0.00 0.00 0.00 3.01
581 605 8.647796 CCATATATAAATACCGCTCCTGGAATA 58.352 37.037 0.00 0.00 0.00 1.75
587 611 7.923414 AAATACCGCTCCTGGAATATATTTC 57.077 36.000 0.00 0.00 0.00 2.17
588 612 4.287766 ACCGCTCCTGGAATATATTTCC 57.712 45.455 1.11 4.54 39.03 3.13
589 613 3.262420 CCGCTCCTGGAATATATTTCCG 58.738 50.000 1.11 0.00 41.43 4.30
590 614 3.306780 CCGCTCCTGGAATATATTTCCGT 60.307 47.826 1.11 0.00 41.43 4.69
591 615 3.679980 CGCTCCTGGAATATATTTCCGTG 59.320 47.826 1.11 2.10 41.43 4.94
592 616 4.642429 GCTCCTGGAATATATTTCCGTGT 58.358 43.478 1.11 0.00 41.43 4.49
593 617 5.063880 GCTCCTGGAATATATTTCCGTGTT 58.936 41.667 1.11 0.00 41.43 3.32
594 618 5.531287 GCTCCTGGAATATATTTCCGTGTTT 59.469 40.000 1.11 0.00 41.43 2.83
595 619 6.039382 GCTCCTGGAATATATTTCCGTGTTTT 59.961 38.462 1.11 0.00 41.43 2.43
596 620 7.416326 GCTCCTGGAATATATTTCCGTGTTTTT 60.416 37.037 1.11 0.00 41.43 1.94
668 692 2.127869 CGATCTCCAGAAGCCCCGA 61.128 63.158 0.00 0.00 0.00 5.14
670 694 1.002274 ATCTCCAGAAGCCCCGAGT 59.998 57.895 0.00 0.00 0.00 4.18
672 696 3.672295 CTCCAGAAGCCCCGAGTGC 62.672 68.421 0.00 0.00 0.00 4.40
697 721 2.131023 GATTCAATCCCCTCCTCACCT 58.869 52.381 0.00 0.00 0.00 4.00
698 722 1.584724 TTCAATCCCCTCCTCACCTC 58.415 55.000 0.00 0.00 0.00 3.85
736 792 3.600843 GTCGCCTACTCCGACCTT 58.399 61.111 2.79 0.00 46.78 3.50
747 803 1.972978 CCGACCTTCCTCGGTTCTT 59.027 57.895 0.00 0.00 46.93 2.52
771 827 2.505557 CGTCGACCAGGTAACGGC 60.506 66.667 16.13 7.09 46.39 5.68
772 828 2.968206 GTCGACCAGGTAACGGCT 59.032 61.111 3.51 0.00 46.39 5.52
774 830 1.604308 TCGACCAGGTAACGGCTGA 60.604 57.895 0.00 0.00 46.39 4.26
775 831 0.968901 TCGACCAGGTAACGGCTGAT 60.969 55.000 0.00 0.00 46.39 2.90
777 833 1.653151 GACCAGGTAACGGCTGATTC 58.347 55.000 0.00 0.00 46.39 2.52
843 901 3.058457 GCGTCACGACTGCTTTTTC 57.942 52.632 0.00 0.00 0.00 2.29
867 925 1.660167 TGCTTCTGCATTCATCTCGG 58.340 50.000 0.00 0.00 45.31 4.63
869 927 0.942962 CTTCTGCATTCATCTCGGGC 59.057 55.000 0.00 0.00 0.00 6.13
881 939 1.135315 CTCGGGCATGCTTTGTTCG 59.865 57.895 18.92 11.76 0.00 3.95
897 955 1.097232 TTCGGCTGGCAGATTGATTG 58.903 50.000 20.86 0.00 0.00 2.67
900 958 1.760192 GGCTGGCAGATTGATTGTCT 58.240 50.000 20.86 0.00 0.00 3.41
901 959 1.674962 GGCTGGCAGATTGATTGTCTC 59.325 52.381 20.86 0.00 0.00 3.36
902 960 2.641305 GCTGGCAGATTGATTGTCTCT 58.359 47.619 20.86 0.00 0.00 3.10
912 970 6.035866 CAGATTGATTGTCTCTTCTTCTTCGG 59.964 42.308 0.00 0.00 0.00 4.30
926 984 3.599792 TTCGGCGTCGTCGTCTTCC 62.600 63.158 19.81 0.00 39.73 3.46
978 1060 1.134670 GTGACCCTGGAAGAAGATCGG 60.135 57.143 0.00 0.00 34.07 4.18
1028 1110 4.762289 AGTTCTCTTCTTGGCGGATTAT 57.238 40.909 0.00 0.00 0.00 1.28
1030 1112 6.235231 AGTTCTCTTCTTGGCGGATTATTA 57.765 37.500 0.00 0.00 0.00 0.98
1031 1113 6.650120 AGTTCTCTTCTTGGCGGATTATTAA 58.350 36.000 0.00 0.00 0.00 1.40
1032 1114 7.283329 AGTTCTCTTCTTGGCGGATTATTAAT 58.717 34.615 0.00 0.00 0.00 1.40
1033 1115 7.442666 AGTTCTCTTCTTGGCGGATTATTAATC 59.557 37.037 7.73 7.73 37.17 1.75
1034 1116 7.067496 TCTCTTCTTGGCGGATTATTAATCT 57.933 36.000 14.46 0.00 38.01 2.40
1036 1118 6.591935 TCTTCTTGGCGGATTATTAATCTGT 58.408 36.000 20.98 0.00 44.44 3.41
1037 1119 7.732025 TCTTCTTGGCGGATTATTAATCTGTA 58.268 34.615 20.98 11.49 44.44 2.74
1038 1120 7.656137 TCTTCTTGGCGGATTATTAATCTGTAC 59.344 37.037 20.98 16.05 44.44 2.90
1039 1121 7.062749 TCTTGGCGGATTATTAATCTGTACT 57.937 36.000 20.98 0.00 44.44 2.73
1040 1122 8.185506 TCTTGGCGGATTATTAATCTGTACTA 57.814 34.615 20.98 12.91 44.44 1.82
1042 1127 6.694447 TGGCGGATTATTAATCTGTACTACC 58.306 40.000 20.98 15.17 44.44 3.18
1044 1129 6.589139 GGCGGATTATTAATCTGTACTACCAC 59.411 42.308 20.98 6.81 44.44 4.16
1048 1133 7.603024 GGATTATTAATCTGTACTACCACTGCC 59.397 40.741 14.46 0.00 38.01 4.85
1049 1134 2.961526 AATCTGTACTACCACTGCCG 57.038 50.000 0.00 0.00 0.00 5.69
1097 1182 5.392057 GCTAGTAGGGAGTTGCATTTTGTTC 60.392 44.000 0.00 0.00 0.00 3.18
1263 1364 4.344865 TTCTTCGTGCCCTGCCCC 62.345 66.667 0.00 0.00 0.00 5.80
1436 1538 0.884514 TTGTGTTGTGTGTGTGGTGG 59.115 50.000 0.00 0.00 0.00 4.61
1437 1539 1.138671 GTGTTGTGTGTGTGGTGGC 59.861 57.895 0.00 0.00 0.00 5.01
1438 1540 1.303643 TGTTGTGTGTGTGGTGGCA 60.304 52.632 0.00 0.00 0.00 4.92
1465 1567 5.773176 TGAATGAATTCTGATGGATGGATGG 59.227 40.000 7.05 0.00 37.67 3.51
1476 1578 0.178981 GATGGATGGGTGGACATGGG 60.179 60.000 0.00 0.00 0.00 4.00
1477 1579 1.658053 ATGGATGGGTGGACATGGGG 61.658 60.000 0.00 0.00 0.00 4.96
1703 1805 2.203126 GCTCCCTCGGATGCAAGG 60.203 66.667 0.00 0.00 0.00 3.61
1704 1806 3.036429 GCTCCCTCGGATGCAAGGT 62.036 63.158 0.00 0.00 0.00 3.50
1705 1807 1.153289 CTCCCTCGGATGCAAGGTG 60.153 63.158 0.00 0.00 0.00 4.00
1706 1808 1.612146 TCCCTCGGATGCAAGGTGA 60.612 57.895 0.00 0.00 0.00 4.02
1751 1857 2.425668 CTCTTCTTCTTCCTCCGTCTCC 59.574 54.545 0.00 0.00 0.00 3.71
1753 1859 3.266254 TCTTCTTCTTCCTCCGTCTCCTA 59.734 47.826 0.00 0.00 0.00 2.94
1763 1869 2.164624 CTCCGTCTCCTACAAGTTCCAG 59.835 54.545 0.00 0.00 0.00 3.86
1772 1878 2.841442 ACAAGTTCCAGCCTACAGTC 57.159 50.000 0.00 0.00 0.00 3.51
1789 1895 3.129502 CCCATGTCTGCCACAGCG 61.130 66.667 0.00 0.00 44.31 5.18
1793 1899 1.676635 ATGTCTGCCACAGCGCAAT 60.677 52.632 11.47 0.00 44.31 3.56
1843 1981 5.117406 ACCATTCTTTAGGACCAGAATCC 57.883 43.478 3.17 0.00 37.60 3.01
1844 1982 4.540099 ACCATTCTTTAGGACCAGAATCCA 59.460 41.667 3.17 0.00 41.73 3.41
1849 1995 9.189156 CATTCTTTAGGACCAGAATCCAAAATA 57.811 33.333 3.17 0.00 41.73 1.40
1868 2014 5.690464 AATATGTCTGAGGAAGCTTCTGT 57.310 39.130 25.05 13.44 0.00 3.41
1907 2053 2.176546 CAACCCGAGTGCAATGCG 59.823 61.111 0.00 0.00 0.00 4.73
1956 2102 2.281345 CGGCTCTGATGATGGCCC 60.281 66.667 0.00 0.00 41.35 5.80
1995 2148 0.331616 GTTTACCCAGGGAGTGGCAT 59.668 55.000 14.54 0.00 46.45 4.40
2000 2153 0.764369 CCCAGGGAGTGGCATAGCTA 60.764 60.000 0.00 0.00 46.45 3.32
2084 2237 0.104304 AAAGCAGCCGTATCCTACCG 59.896 55.000 0.00 0.00 0.00 4.02
2086 2239 3.125607 CAGCCGTATCCTACCGCA 58.874 61.111 1.60 0.00 35.75 5.69
2145 2298 2.800629 GCACACAAAGCAGCATCAACTT 60.801 45.455 0.00 0.00 0.00 2.66
2267 2420 4.128925 CACTAAGCCTGAGAATAGTGCA 57.871 45.455 6.41 0.00 38.93 4.57
2269 2422 4.749099 CACTAAGCCTGAGAATAGTGCATC 59.251 45.833 0.00 0.00 38.93 3.91
2270 2423 4.653341 ACTAAGCCTGAGAATAGTGCATCT 59.347 41.667 0.00 0.00 0.00 2.90
2272 2425 4.500499 AGCCTGAGAATAGTGCATCTTT 57.500 40.909 0.00 0.00 0.00 2.52
2273 2426 5.620738 AGCCTGAGAATAGTGCATCTTTA 57.379 39.130 0.00 0.00 0.00 1.85
2278 2431 7.117523 GCCTGAGAATAGTGCATCTTTATACTG 59.882 40.741 0.00 0.00 0.00 2.74
2280 2433 8.250143 TGAGAATAGTGCATCTTTATACTGGA 57.750 34.615 0.00 0.00 0.00 3.86
2281 2434 8.363390 TGAGAATAGTGCATCTTTATACTGGAG 58.637 37.037 0.00 0.00 0.00 3.86
2283 2436 8.147058 AGAATAGTGCATCTTTATACTGGAGTG 58.853 37.037 0.00 0.00 0.00 3.51
2300 2453 6.874134 ACTGGAGTGTTTTGTATTAGTAGCAG 59.126 38.462 0.00 0.00 0.00 4.24
2302 2455 5.220416 GGAGTGTTTTGTATTAGTAGCAGCG 60.220 44.000 0.00 0.00 0.00 5.18
2358 2513 0.241213 GCTTTTCTTGCTTCCGTCCC 59.759 55.000 0.00 0.00 0.00 4.46
2394 2552 3.053828 CACTGCTTTGCCTTGGGG 58.946 61.111 0.00 0.00 0.00 4.96
2404 2562 2.367512 CCTTGGGGGAGAGGAGGG 60.368 72.222 0.00 0.00 37.23 4.30
2406 2564 3.626596 TTGGGGGAGAGGAGGGCT 61.627 66.667 0.00 0.00 0.00 5.19
2498 2656 7.068103 AGCTAGCTGCCTATATATAGTGACTTG 59.932 40.741 18.57 10.75 44.23 3.16
2499 2657 7.147983 GCTAGCTGCCTATATATAGTGACTTGT 60.148 40.741 16.78 0.91 35.15 3.16
2501 2659 8.651589 AGCTGCCTATATATAGTGACTTGTTA 57.348 34.615 16.78 0.00 0.00 2.41
2502 2660 9.261035 AGCTGCCTATATATAGTGACTTGTTAT 57.739 33.333 16.78 0.00 0.00 1.89
2581 2740 1.553706 TTGTTCTCTCCGGGGACTAC 58.446 55.000 0.00 1.33 0.00 2.73
2585 2744 3.294214 GTTCTCTCCGGGGACTACATAA 58.706 50.000 0.00 0.00 0.00 1.90
2644 2803 1.099879 GCCCTGTCAAGCATAGCCAG 61.100 60.000 0.00 0.00 0.00 4.85
2645 2804 0.254178 CCCTGTCAAGCATAGCCAGT 59.746 55.000 0.00 0.00 0.00 4.00
2688 2861 1.454479 CCCCGGATCAAGCTTGCAT 60.454 57.895 21.99 15.19 0.00 3.96
2715 2888 5.857822 AGGTTATTCGGTCTTTCTTTTCG 57.142 39.130 0.00 0.00 0.00 3.46
2736 2909 3.426695 CGCCTGCTACCAATCTTTTTGAG 60.427 47.826 0.00 0.00 0.00 3.02
2834 3010 1.070471 GTTGCCGTTAAATGCGCCTG 61.070 55.000 4.18 0.00 0.00 4.85
2849 3025 0.890683 GCCTGAAATGGGTCCACTTG 59.109 55.000 0.00 0.00 0.00 3.16
3169 3348 3.056328 GTTGAGAAGTGCCCGGCC 61.056 66.667 7.03 0.00 0.00 6.13
3294 3473 3.715628 TTTGTTTGCTCTTTCAGAGGC 57.284 42.857 3.00 0.00 42.54 4.70
3409 3889 1.723542 CGATGCTCTACCGAATCATGC 59.276 52.381 0.00 0.00 0.00 4.06
3433 3913 2.549754 CTGTCATGTGTTTGTCTGGTCC 59.450 50.000 0.00 0.00 0.00 4.46
3454 3934 5.310451 TCCGGTTTGGATATATTTAGCCAC 58.690 41.667 0.00 0.00 43.43 5.01
3473 3953 2.880268 CACGGATATGCATGGTGAATGT 59.120 45.455 10.16 0.00 38.65 2.71
3506 3986 3.370672 GGTGTTCTTGGTTTGCAAGTTTG 59.629 43.478 0.00 0.00 0.00 2.93
3537 4017 4.294347 AGGGACTAGGAAGAATGAGAAGG 58.706 47.826 0.00 0.00 36.02 3.46
3577 4057 8.515414 TCTGATTAGATACCGTTCATGTCTATG 58.485 37.037 0.00 0.00 35.57 2.23
3585 4065 6.222038 ACCGTTCATGTCTATGTGAGTTAT 57.778 37.500 0.00 0.00 35.73 1.89
3602 4082 9.755804 TGTGAGTTATGATAACATCATCTCTTC 57.244 33.333 16.80 3.85 46.62 2.87
3622 4122 4.317530 TCTCTGGAAGTTGCTACCTAGA 57.682 45.455 0.00 0.00 33.76 2.43
3628 4128 6.495872 TCTGGAAGTTGCTACCTAGAAAGTTA 59.504 38.462 0.00 0.00 35.20 2.24
3706 4207 4.575236 CACATGTCTTCAATGGAGAGGATG 59.425 45.833 0.00 8.31 0.00 3.51
3707 4208 3.920231 TGTCTTCAATGGAGAGGATGG 57.080 47.619 0.00 0.00 0.00 3.51
3708 4209 3.453868 TGTCTTCAATGGAGAGGATGGA 58.546 45.455 0.00 0.00 0.00 3.41
3709 4210 4.042884 TGTCTTCAATGGAGAGGATGGAT 58.957 43.478 0.00 0.00 0.00 3.41
3716 4217 2.603021 TGGAGAGGATGGATGACTAGC 58.397 52.381 0.00 0.00 0.00 3.42
3739 4240 4.445452 AATGTTCATCTCATTGTGTGCC 57.555 40.909 0.00 0.00 34.74 5.01
3741 4242 1.131126 GTTCATCTCATTGTGTGCCGG 59.869 52.381 0.00 0.00 0.00 6.13
3757 4264 1.502163 CCGGGCGATTGCTCAGAATC 61.502 60.000 5.45 0.00 43.95 2.52
3771 4278 4.321718 CTCAGAATCTTCAGTTGCCTTGA 58.678 43.478 0.00 0.00 0.00 3.02
3836 4348 7.174107 ACTTGTGCAAGCTCCATAAATTTAT 57.826 32.000 11.43 4.81 41.99 1.40
3902 4414 1.244816 GGGGGTTTCACTAAGTGCAC 58.755 55.000 9.40 9.40 32.98 4.57
3995 4507 2.882137 CGTTTCCTTTGAAAGCTACCCA 59.118 45.455 0.00 0.00 41.02 4.51
4048 4560 5.163824 CGTGTGCATTCAGACTACATTGATT 60.164 40.000 0.00 0.00 34.62 2.57
4069 4581 3.896648 AGTGCCGTGATTTTACTTGTG 57.103 42.857 0.00 0.00 0.00 3.33
4073 4585 2.412325 GCCGTGATTTTACTTGTGGTCG 60.412 50.000 0.00 0.00 0.00 4.79
4150 4663 4.954118 TGCAGTGGGACCCGACCT 62.954 66.667 5.91 0.00 0.00 3.85
4203 4716 2.281091 TCCGGCGGAGAAGGGTAT 59.719 61.111 27.46 0.00 0.00 2.73
4458 4971 5.470098 ACCAAAAGTGACAATGCTACTACTG 59.530 40.000 0.00 0.00 0.00 2.74
4504 5017 2.370849 GTTGGGACTTGGGACTGAGTAA 59.629 50.000 0.00 0.00 0.00 2.24
4637 5152 8.935844 AGTGTGTGTAAATATGATATATTGGCG 58.064 33.333 0.00 0.00 0.00 5.69
4656 5171 1.400142 CGAAGGTTGCCAATTCGCATA 59.600 47.619 0.00 0.00 39.29 3.14
4657 5172 2.159448 CGAAGGTTGCCAATTCGCATAA 60.159 45.455 0.00 0.00 39.29 1.90
4658 5173 3.438360 GAAGGTTGCCAATTCGCATAAG 58.562 45.455 0.00 0.00 38.87 1.73
4659 5174 1.750778 AGGTTGCCAATTCGCATAAGG 59.249 47.619 0.00 0.00 38.87 2.69
4660 5175 1.202405 GGTTGCCAATTCGCATAAGGG 60.202 52.381 0.00 0.00 38.87 3.95
4661 5176 1.476488 GTTGCCAATTCGCATAAGGGT 59.524 47.619 0.00 0.00 38.87 4.34
4662 5177 1.102154 TGCCAATTCGCATAAGGGTG 58.898 50.000 0.00 0.00 32.62 4.61
4663 5178 0.249031 GCCAATTCGCATAAGGGTGC 60.249 55.000 0.00 0.00 41.65 5.01
4812 5327 4.281182 GGTAGGGTCGAGATTGATATGTGT 59.719 45.833 0.00 0.00 0.00 3.72
4813 5328 4.327982 AGGGTCGAGATTGATATGTGTG 57.672 45.455 0.00 0.00 0.00 3.82
4978 5494 9.860650 ATACAGTTATATTGGTATTGGCAGAAA 57.139 29.630 0.00 0.00 0.00 2.52
4981 5497 9.520204 CAGTTATATTGGTATTGGCAGAAAAAG 57.480 33.333 0.00 0.00 0.00 2.27
4984 5500 4.864704 TTGGTATTGGCAGAAAAAGGAC 57.135 40.909 0.00 0.00 0.00 3.85
4985 5501 2.817258 TGGTATTGGCAGAAAAAGGACG 59.183 45.455 0.00 0.00 0.00 4.79
5013 5529 1.774639 GCCTCAAGCATGTGTTGTTG 58.225 50.000 9.06 4.44 42.97 3.33
5014 5530 1.067516 GCCTCAAGCATGTGTTGTTGT 59.932 47.619 9.06 0.00 42.97 3.32
5025 5541 1.655099 GTGTTGTTGTTGTTGCTGCTG 59.345 47.619 0.00 0.00 0.00 4.41
5082 5598 9.737025 GTTTCAGTAATGTCTGTTTCGTAATAC 57.263 33.333 0.00 0.00 36.85 1.89
5083 5599 9.701098 TTTCAGTAATGTCTGTTTCGTAATACT 57.299 29.630 0.00 0.00 36.85 2.12
5084 5600 9.701098 TTCAGTAATGTCTGTTTCGTAATACTT 57.299 29.630 0.00 0.00 36.85 2.24
5085 5601 9.350357 TCAGTAATGTCTGTTTCGTAATACTTC 57.650 33.333 0.00 0.00 36.85 3.01
5086 5602 8.592998 CAGTAATGTCTGTTTCGTAATACTTCC 58.407 37.037 0.00 0.00 0.00 3.46
5087 5603 8.529476 AGTAATGTCTGTTTCGTAATACTTCCT 58.471 33.333 0.00 0.00 0.00 3.36
5088 5604 7.829378 AATGTCTGTTTCGTAATACTTCCTC 57.171 36.000 0.00 0.00 0.00 3.71
5089 5605 5.717119 TGTCTGTTTCGTAATACTTCCTCC 58.283 41.667 0.00 0.00 0.00 4.30
5090 5606 4.797349 GTCTGTTTCGTAATACTTCCTCCG 59.203 45.833 0.00 0.00 0.00 4.63
5091 5607 4.460382 TCTGTTTCGTAATACTTCCTCCGT 59.540 41.667 0.00 0.00 0.00 4.69
5092 5608 5.047802 TCTGTTTCGTAATACTTCCTCCGTT 60.048 40.000 0.00 0.00 0.00 4.44
5093 5609 5.163513 TGTTTCGTAATACTTCCTCCGTTC 58.836 41.667 0.00 0.00 0.00 3.95
5094 5610 4.376340 TTCGTAATACTTCCTCCGTTCC 57.624 45.455 0.00 0.00 0.00 3.62
5095 5611 3.355378 TCGTAATACTTCCTCCGTTCCA 58.645 45.455 0.00 0.00 0.00 3.53
5096 5612 3.763360 TCGTAATACTTCCTCCGTTCCAA 59.237 43.478 0.00 0.00 0.00 3.53
5097 5613 4.220382 TCGTAATACTTCCTCCGTTCCAAA 59.780 41.667 0.00 0.00 0.00 3.28
5098 5614 4.931002 CGTAATACTTCCTCCGTTCCAAAA 59.069 41.667 0.00 0.00 0.00 2.44
5099 5615 5.583457 CGTAATACTTCCTCCGTTCCAAAAT 59.417 40.000 0.00 0.00 0.00 1.82
5100 5616 6.757947 CGTAATACTTCCTCCGTTCCAAAATA 59.242 38.462 0.00 0.00 0.00 1.40
5101 5617 7.278424 CGTAATACTTCCTCCGTTCCAAAATAA 59.722 37.037 0.00 0.00 0.00 1.40
5102 5618 8.949177 GTAATACTTCCTCCGTTCCAAAATAAA 58.051 33.333 0.00 0.00 0.00 1.40
5103 5619 8.589701 AATACTTCCTCCGTTCCAAAATAAAT 57.410 30.769 0.00 0.00 0.00 1.40
5104 5620 6.267496 ACTTCCTCCGTTCCAAAATAAATG 57.733 37.500 0.00 0.00 0.00 2.32
5105 5621 6.007703 ACTTCCTCCGTTCCAAAATAAATGA 58.992 36.000 0.00 0.00 0.00 2.57
5106 5622 5.890424 TCCTCCGTTCCAAAATAAATGAC 57.110 39.130 0.00 0.00 0.00 3.06
5107 5623 5.566469 TCCTCCGTTCCAAAATAAATGACT 58.434 37.500 0.00 0.00 0.00 3.41
5108 5624 5.646360 TCCTCCGTTCCAAAATAAATGACTC 59.354 40.000 0.00 0.00 0.00 3.36
5109 5625 5.414454 CCTCCGTTCCAAAATAAATGACTCA 59.586 40.000 0.00 0.00 0.00 3.41
5110 5626 6.072175 CCTCCGTTCCAAAATAAATGACTCAA 60.072 38.462 0.00 0.00 0.00 3.02
5111 5627 6.674066 TCCGTTCCAAAATAAATGACTCAAC 58.326 36.000 0.00 0.00 0.00 3.18
5112 5628 6.488683 TCCGTTCCAAAATAAATGACTCAACT 59.511 34.615 0.00 0.00 0.00 3.16
5113 5629 7.013846 TCCGTTCCAAAATAAATGACTCAACTT 59.986 33.333 0.00 0.00 0.00 2.66
5114 5630 8.293867 CCGTTCCAAAATAAATGACTCAACTTA 58.706 33.333 0.00 0.00 0.00 2.24
5115 5631 9.840427 CGTTCCAAAATAAATGACTCAACTTAT 57.160 29.630 0.00 0.00 0.00 1.73
5135 5651 9.828039 AACTTATACTAATTTTAGGACGAAGGG 57.172 33.333 0.00 0.00 35.08 3.95
5136 5652 9.205513 ACTTATACTAATTTTAGGACGAAGGGA 57.794 33.333 0.00 0.00 35.08 4.20
5137 5653 9.694137 CTTATACTAATTTTAGGACGAAGGGAG 57.306 37.037 0.00 0.00 35.08 4.30
5138 5654 7.672122 ATACTAATTTTAGGACGAAGGGAGT 57.328 36.000 0.00 0.00 35.08 3.85
5139 5655 8.773033 ATACTAATTTTAGGACGAAGGGAGTA 57.227 34.615 0.00 0.00 35.08 2.59
5225 5741 2.101415 TGAACCATCAGATAGCCACTCG 59.899 50.000 0.00 0.00 0.00 4.18
5286 5802 3.408634 GTTGTAAGAGCAACCCTAGCAA 58.591 45.455 0.00 0.00 41.93 3.91
5332 5849 3.552604 TTTTGTTTGCGGTATGCTCTC 57.447 42.857 0.00 0.00 46.63 3.20
5369 5886 1.279840 GTGCAAGACACGGCAGAAC 59.720 57.895 0.00 0.00 41.35 3.01
5370 5887 1.153269 TGCAAGACACGGCAGAACA 60.153 52.632 0.00 0.00 34.58 3.18
5371 5888 1.159713 TGCAAGACACGGCAGAACAG 61.160 55.000 0.00 0.00 34.58 3.16
5372 5889 0.880278 GCAAGACACGGCAGAACAGA 60.880 55.000 0.00 0.00 0.00 3.41
5373 5890 1.800805 CAAGACACGGCAGAACAGAT 58.199 50.000 0.00 0.00 0.00 2.90
5374 5891 2.930887 GCAAGACACGGCAGAACAGATA 60.931 50.000 0.00 0.00 0.00 1.98
5375 5892 3.525537 CAAGACACGGCAGAACAGATAT 58.474 45.455 0.00 0.00 0.00 1.63
5376 5893 3.170791 AGACACGGCAGAACAGATATG 57.829 47.619 0.00 0.00 0.00 1.78
5377 5894 1.594862 GACACGGCAGAACAGATATGC 59.405 52.381 0.00 0.00 39.25 3.14
5378 5895 1.208052 ACACGGCAGAACAGATATGCT 59.792 47.619 0.00 0.00 39.88 3.79
5379 5896 2.430694 ACACGGCAGAACAGATATGCTA 59.569 45.455 0.00 0.00 39.88 3.49
5380 5897 3.118775 ACACGGCAGAACAGATATGCTAA 60.119 43.478 0.00 0.00 39.88 3.09
5381 5898 3.871006 CACGGCAGAACAGATATGCTAAA 59.129 43.478 0.00 0.00 39.88 1.85
5382 5899 4.332543 CACGGCAGAACAGATATGCTAAAA 59.667 41.667 0.00 0.00 39.88 1.52
5383 5900 4.332819 ACGGCAGAACAGATATGCTAAAAC 59.667 41.667 0.00 0.00 39.88 2.43
5384 5901 4.550831 CGGCAGAACAGATATGCTAAAACG 60.551 45.833 0.00 0.00 39.88 3.60
5385 5902 4.570772 GGCAGAACAGATATGCTAAAACGA 59.429 41.667 0.00 0.00 39.88 3.85
5386 5903 5.237344 GGCAGAACAGATATGCTAAAACGAT 59.763 40.000 0.00 0.00 39.88 3.73
5387 5904 6.423905 GGCAGAACAGATATGCTAAAACGATA 59.576 38.462 0.00 0.00 39.88 2.92
5388 5905 7.042051 GGCAGAACAGATATGCTAAAACGATAA 60.042 37.037 0.00 0.00 39.88 1.75
5389 5906 8.499162 GCAGAACAGATATGCTAAAACGATAAT 58.501 33.333 0.00 0.00 37.00 1.28
5390 5907 9.803130 CAGAACAGATATGCTAAAACGATAATG 57.197 33.333 0.00 0.00 0.00 1.90
5391 5908 8.499162 AGAACAGATATGCTAAAACGATAATGC 58.501 33.333 0.00 0.00 0.00 3.56
5392 5909 7.728847 ACAGATATGCTAAAACGATAATGCA 57.271 32.000 0.00 0.00 34.88 3.96
5393 5910 8.153479 ACAGATATGCTAAAACGATAATGCAA 57.847 30.769 0.00 0.00 34.07 4.08
5394 5911 8.620416 ACAGATATGCTAAAACGATAATGCAAA 58.380 29.630 0.00 0.00 34.07 3.68
5395 5912 9.616634 CAGATATGCTAAAACGATAATGCAAAT 57.383 29.630 0.00 0.00 34.07 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.432510 CTCTTCGAACCCTAAGAGCCAT 59.567 50.000 0.00 0.00 41.51 4.40
23 24 0.319555 TGCTCAACCGTTCCTCTTCG 60.320 55.000 0.00 0.00 0.00 3.79
24 25 1.878953 TTGCTCAACCGTTCCTCTTC 58.121 50.000 0.00 0.00 0.00 2.87
25 26 2.341846 TTTGCTCAACCGTTCCTCTT 57.658 45.000 0.00 0.00 0.00 2.85
32 34 1.770294 TTTCCCTTTTGCTCAACCGT 58.230 45.000 0.00 0.00 0.00 4.83
48 50 9.233232 AGAAATTTGTGTTATGTCGTTCTTTTC 57.767 29.630 0.00 0.00 0.00 2.29
53 55 6.359617 CCACAGAAATTTGTGTTATGTCGTTC 59.640 38.462 17.63 0.00 45.44 3.95
58 60 7.523293 TCATCCACAGAAATTTGTGTTATGT 57.477 32.000 24.92 11.04 45.44 2.29
60 62 7.121168 ACGATCATCCACAGAAATTTGTGTTAT 59.879 33.333 17.63 11.63 45.44 1.89
68 70 2.684881 GCCACGATCATCCACAGAAATT 59.315 45.455 0.00 0.00 0.00 1.82
95 98 2.125713 TGCCGGTGTGATAGTGCG 60.126 61.111 1.90 0.00 0.00 5.34
100 103 2.900273 GGCTCTGCCGGTGTGATA 59.100 61.111 1.90 0.00 39.62 2.15
111 114 1.134159 CCTTCTCCTCCATTGGCTCTG 60.134 57.143 0.00 0.00 0.00 3.35
118 121 1.563410 CTGGCTTCCTTCTCCTCCATT 59.437 52.381 0.00 0.00 0.00 3.16
119 122 1.211456 CTGGCTTCCTTCTCCTCCAT 58.789 55.000 0.00 0.00 0.00 3.41
161 164 1.223487 CCCCAACCATACCCGTCTG 59.777 63.158 0.00 0.00 0.00 3.51
165 168 1.470051 CTTTTCCCCAACCATACCCG 58.530 55.000 0.00 0.00 0.00 5.28
169 172 1.643811 CCTCCCTTTTCCCCAACCATA 59.356 52.381 0.00 0.00 0.00 2.74
189 192 3.617538 GCGCACTATGCCGTCGTC 61.618 66.667 0.30 0.00 41.12 4.20
211 216 4.488879 TCTCGCTCGGATATTCATGAATG 58.511 43.478 27.59 13.11 32.50 2.67
212 217 4.790765 TCTCGCTCGGATATTCATGAAT 57.209 40.909 23.75 23.75 34.93 2.57
214 219 4.790765 ATTCTCGCTCGGATATTCATGA 57.209 40.909 0.00 0.00 0.00 3.07
245 252 8.248945 TCGGTTTTACTTTGGTTTGTTTATGAA 58.751 29.630 0.00 0.00 0.00 2.57
250 257 4.865925 GCTCGGTTTTACTTTGGTTTGTTT 59.134 37.500 0.00 0.00 0.00 2.83
251 258 4.426416 GCTCGGTTTTACTTTGGTTTGTT 58.574 39.130 0.00 0.00 0.00 2.83
257 264 1.232119 ACGGCTCGGTTTTACTTTGG 58.768 50.000 0.00 0.00 0.00 3.28
262 270 1.208358 GGCAACGGCTCGGTTTTAC 59.792 57.895 0.00 0.00 40.87 2.01
314 323 0.885879 ATCGCCTTTTTCCGTTTCCC 59.114 50.000 0.00 0.00 0.00 3.97
317 326 3.446310 ACAAATCGCCTTTTTCCGTTT 57.554 38.095 0.00 0.00 0.00 3.60
319 328 3.446310 AAACAAATCGCCTTTTTCCGT 57.554 38.095 0.00 0.00 0.00 4.69
329 338 2.438868 AGCTCCCAAAAACAAATCGC 57.561 45.000 0.00 0.00 0.00 4.58
344 354 1.673400 GCTGGCTAAAGGCTAAAGCTC 59.327 52.381 17.45 10.25 41.70 4.09
345 355 1.004745 TGCTGGCTAAAGGCTAAAGCT 59.995 47.619 17.45 0.00 40.11 3.74
346 356 1.133216 GTGCTGGCTAAAGGCTAAAGC 59.867 52.381 11.50 11.50 41.69 3.51
347 357 2.421424 CTGTGCTGGCTAAAGGCTAAAG 59.579 50.000 5.07 0.00 41.69 1.85
350 360 0.253044 CCTGTGCTGGCTAAAGGCTA 59.747 55.000 5.07 0.00 41.69 3.93
351 361 1.001641 CCTGTGCTGGCTAAAGGCT 60.002 57.895 5.07 0.00 41.69 4.58
352 362 0.609131 TTCCTGTGCTGGCTAAAGGC 60.609 55.000 0.00 0.00 41.50 4.35
353 363 1.815003 CTTTCCTGTGCTGGCTAAAGG 59.185 52.381 0.00 0.00 0.00 3.11
354 364 2.783135 TCTTTCCTGTGCTGGCTAAAG 58.217 47.619 0.00 0.00 0.00 1.85
356 366 2.504367 GTTCTTTCCTGTGCTGGCTAA 58.496 47.619 0.00 0.00 0.00 3.09
357 367 1.271379 GGTTCTTTCCTGTGCTGGCTA 60.271 52.381 0.00 0.00 0.00 3.93
358 368 0.538287 GGTTCTTTCCTGTGCTGGCT 60.538 55.000 0.00 0.00 0.00 4.75
359 369 1.856265 CGGTTCTTTCCTGTGCTGGC 61.856 60.000 0.00 0.00 0.00 4.85
360 370 1.856265 GCGGTTCTTTCCTGTGCTGG 61.856 60.000 0.00 0.00 0.00 4.85
361 371 1.576421 GCGGTTCTTTCCTGTGCTG 59.424 57.895 0.00 0.00 0.00 4.41
362 372 1.961277 CGCGGTTCTTTCCTGTGCT 60.961 57.895 0.00 0.00 0.00 4.40
363 373 2.556287 CGCGGTTCTTTCCTGTGC 59.444 61.111 0.00 0.00 0.00 4.57
364 374 1.301401 TCCGCGGTTCTTTCCTGTG 60.301 57.895 27.15 0.00 0.00 3.66
365 375 1.301479 GTCCGCGGTTCTTTCCTGT 60.301 57.895 27.15 0.00 0.00 4.00
447 458 3.382227 GGGGGAGAAACAACGAAAGAAAA 59.618 43.478 0.00 0.00 0.00 2.29
448 459 2.953648 GGGGGAGAAACAACGAAAGAAA 59.046 45.455 0.00 0.00 0.00 2.52
449 460 2.578786 GGGGGAGAAACAACGAAAGAA 58.421 47.619 0.00 0.00 0.00 2.52
450 461 2.265589 GGGGGAGAAACAACGAAAGA 57.734 50.000 0.00 0.00 0.00 2.52
470 481 3.507009 GAGAGGGACGGACGGACG 61.507 72.222 0.00 0.00 40.31 4.79
471 482 3.139469 GGAGAGGGACGGACGGAC 61.139 72.222 0.00 0.00 0.00 4.79
472 483 2.905935 GATGGAGAGGGACGGACGGA 62.906 65.000 0.00 0.00 0.00 4.69
473 484 2.442272 ATGGAGAGGGACGGACGG 60.442 66.667 0.00 0.00 0.00 4.79
474 485 1.448922 GAGATGGAGAGGGACGGACG 61.449 65.000 0.00 0.00 0.00 4.79
475 486 1.110518 GGAGATGGAGAGGGACGGAC 61.111 65.000 0.00 0.00 0.00 4.79
476 487 1.230497 GGAGATGGAGAGGGACGGA 59.770 63.158 0.00 0.00 0.00 4.69
477 488 0.397816 AAGGAGATGGAGAGGGACGG 60.398 60.000 0.00 0.00 0.00 4.79
478 489 0.749649 CAAGGAGATGGAGAGGGACG 59.250 60.000 0.00 0.00 0.00 4.79
483 494 2.649190 TCTCGACAAGGAGATGGAGAG 58.351 52.381 0.00 0.00 38.12 3.20
486 497 3.020274 CTCTTCTCGACAAGGAGATGGA 58.980 50.000 0.33 2.30 39.02 3.41
488 499 3.020274 TCCTCTTCTCGACAAGGAGATG 58.980 50.000 0.33 0.00 39.02 2.90
489 500 3.374042 TCCTCTTCTCGACAAGGAGAT 57.626 47.619 0.33 0.00 39.02 2.75
494 505 1.840737 TCCCTCCTCTTCTCGACAAG 58.159 55.000 0.00 0.00 0.00 3.16
527 538 2.573341 ATATATCGACGGGCGCGACG 62.573 60.000 33.83 33.83 40.94 5.12
528 539 0.374758 TATATATCGACGGGCGCGAC 59.625 55.000 30.98 22.64 40.94 5.19
533 544 2.357009 ACACGGATATATATCGACGGGC 59.643 50.000 18.12 4.62 33.52 6.13
534 545 3.003068 GGACACGGATATATATCGACGGG 59.997 52.174 17.13 17.13 33.52 5.28
536 547 4.870221 TGGACACGGATATATATCGACG 57.130 45.455 15.06 15.35 33.52 5.12
562 586 8.044908 GGAAATATATTCCAGGAGCGGTATTTA 58.955 37.037 0.00 0.00 38.45 1.40
568 592 3.262420 CGGAAATATATTCCAGGAGCGG 58.738 50.000 7.89 0.00 38.49 5.52
569 593 3.679980 CACGGAAATATATTCCAGGAGCG 59.320 47.826 7.89 0.00 38.49 5.03
570 594 4.642429 ACACGGAAATATATTCCAGGAGC 58.358 43.478 7.89 0.00 38.49 4.70
571 595 7.568199 AAAACACGGAAATATATTCCAGGAG 57.432 36.000 7.89 0.00 38.49 3.69
593 617 4.258457 TCACAGGAAAGGAAGGGAAAAA 57.742 40.909 0.00 0.00 0.00 1.94
594 618 3.963476 TCACAGGAAAGGAAGGGAAAA 57.037 42.857 0.00 0.00 0.00 2.29
595 619 5.796502 ATATCACAGGAAAGGAAGGGAAA 57.203 39.130 0.00 0.00 0.00 3.13
596 620 7.256190 CGTATATATCACAGGAAAGGAAGGGAA 60.256 40.741 0.00 0.00 0.00 3.97
597 621 6.210784 CGTATATATCACAGGAAAGGAAGGGA 59.789 42.308 0.00 0.00 0.00 4.20
598 622 6.210784 TCGTATATATCACAGGAAAGGAAGGG 59.789 42.308 0.00 0.00 0.00 3.95
599 623 7.228314 TCGTATATATCACAGGAAAGGAAGG 57.772 40.000 0.00 0.00 0.00 3.46
600 624 8.523658 TGATCGTATATATCACAGGAAAGGAAG 58.476 37.037 0.00 0.00 0.00 3.46
646 670 0.105778 GGGCTTCTGGAGATCGAAGG 59.894 60.000 9.30 0.00 37.65 3.46
719 748 1.432657 GAAGGTCGGAGTAGGCGAC 59.567 63.158 0.00 0.00 0.00 5.19
720 749 1.751927 GGAAGGTCGGAGTAGGCGA 60.752 63.158 0.00 0.00 0.00 5.54
722 751 1.726533 CGAGGAAGGTCGGAGTAGGC 61.727 65.000 0.00 0.00 36.26 3.93
772 828 9.016623 CGATAACAACAGTATTAACGAGAATCA 57.983 33.333 0.00 0.00 30.67 2.57
774 830 7.437267 CCCGATAACAACAGTATTAACGAGAAT 59.563 37.037 8.10 0.00 30.67 2.40
775 831 6.753279 CCCGATAACAACAGTATTAACGAGAA 59.247 38.462 8.10 0.00 30.67 2.87
777 833 5.461078 CCCCGATAACAACAGTATTAACGAG 59.539 44.000 8.10 0.00 30.67 4.18
833 891 0.105504 AAGCAGGGGGAAAAAGCAGT 60.106 50.000 0.00 0.00 0.00 4.40
834 892 0.605083 GAAGCAGGGGGAAAAAGCAG 59.395 55.000 0.00 0.00 0.00 4.24
867 925 1.444895 CAGCCGAACAAAGCATGCC 60.445 57.895 15.66 0.00 0.00 4.40
869 927 1.444895 GCCAGCCGAACAAAGCATG 60.445 57.895 0.00 0.00 0.00 4.06
881 939 1.674962 GAGACAATCAATCTGCCAGCC 59.325 52.381 0.00 0.00 0.00 4.85
897 955 1.619983 GACGCCGAAGAAGAAGAGAC 58.380 55.000 0.00 0.00 0.00 3.36
900 958 0.109873 GACGACGCCGAAGAAGAAGA 60.110 55.000 0.00 0.00 39.50 2.87
901 959 1.396543 CGACGACGCCGAAGAAGAAG 61.397 60.000 0.00 0.00 39.50 2.85
902 960 1.441515 CGACGACGCCGAAGAAGAA 60.442 57.895 0.00 0.00 39.50 2.52
912 970 2.504244 CCAGGAAGACGACGACGC 60.504 66.667 7.30 0.27 43.96 5.19
941 1005 0.467384 CACCGGATTGATCAGCTCCT 59.533 55.000 9.46 4.37 0.00 3.69
943 1007 1.576356 GTCACCGGATTGATCAGCTC 58.424 55.000 9.46 0.00 0.00 4.09
944 1008 0.179000 GGTCACCGGATTGATCAGCT 59.821 55.000 9.46 0.00 0.00 4.24
945 1009 0.815615 GGGTCACCGGATTGATCAGC 60.816 60.000 9.46 0.00 0.00 4.26
946 1010 0.833287 AGGGTCACCGGATTGATCAG 59.167 55.000 9.46 0.00 43.47 2.90
993 1075 3.926616 AGAGAACTTTACCATGTCACCG 58.073 45.455 0.00 0.00 0.00 4.94
1028 1110 3.429822 GCGGCAGTGGTAGTACAGATTAA 60.430 47.826 2.06 0.00 0.00 1.40
1030 1112 1.134788 GCGGCAGTGGTAGTACAGATT 60.135 52.381 2.06 0.00 0.00 2.40
1031 1113 0.460311 GCGGCAGTGGTAGTACAGAT 59.540 55.000 2.06 0.00 0.00 2.90
1032 1114 0.611062 AGCGGCAGTGGTAGTACAGA 60.611 55.000 1.45 0.00 0.00 3.41
1033 1115 0.458543 CAGCGGCAGTGGTAGTACAG 60.459 60.000 1.45 0.00 0.00 2.74
1034 1116 1.589630 CAGCGGCAGTGGTAGTACA 59.410 57.895 1.45 0.00 0.00 2.90
1036 1118 1.945354 GAGCAGCGGCAGTGGTAGTA 61.945 60.000 12.44 0.00 44.61 1.82
1037 1119 3.302347 GAGCAGCGGCAGTGGTAGT 62.302 63.158 12.44 0.00 44.61 2.73
1038 1120 2.510238 GAGCAGCGGCAGTGGTAG 60.510 66.667 12.44 0.00 44.61 3.18
1039 1121 4.435436 CGAGCAGCGGCAGTGGTA 62.435 66.667 12.44 0.00 44.61 3.25
1068 1153 1.765230 CAACTCCCTACTAGCCTCGT 58.235 55.000 0.00 0.00 0.00 4.18
1069 1154 0.386113 GCAACTCCCTACTAGCCTCG 59.614 60.000 0.00 0.00 0.00 4.63
1070 1155 1.486211 TGCAACTCCCTACTAGCCTC 58.514 55.000 0.00 0.00 0.00 4.70
1071 1156 2.182516 ATGCAACTCCCTACTAGCCT 57.817 50.000 0.00 0.00 0.00 4.58
1072 1157 3.283259 AAATGCAACTCCCTACTAGCC 57.717 47.619 0.00 0.00 0.00 3.93
1073 1158 4.010349 ACAAAATGCAACTCCCTACTAGC 58.990 43.478 0.00 0.00 0.00 3.42
1074 1159 5.940470 AGAACAAAATGCAACTCCCTACTAG 59.060 40.000 0.00 0.00 0.00 2.57
1075 1160 5.876357 AGAACAAAATGCAACTCCCTACTA 58.124 37.500 0.00 0.00 0.00 1.82
1076 1161 4.729868 AGAACAAAATGCAACTCCCTACT 58.270 39.130 0.00 0.00 0.00 2.57
1077 1162 5.222631 CAAGAACAAAATGCAACTCCCTAC 58.777 41.667 0.00 0.00 0.00 3.18
1078 1163 4.280677 CCAAGAACAAAATGCAACTCCCTA 59.719 41.667 0.00 0.00 0.00 3.53
1079 1164 3.070015 CCAAGAACAAAATGCAACTCCCT 59.930 43.478 0.00 0.00 0.00 4.20
1080 1165 3.069443 TCCAAGAACAAAATGCAACTCCC 59.931 43.478 0.00 0.00 0.00 4.30
1081 1166 4.051237 GTCCAAGAACAAAATGCAACTCC 58.949 43.478 0.00 0.00 0.00 3.85
1097 1182 2.773487 TGATTAACCACACCGTCCAAG 58.227 47.619 0.00 0.00 0.00 3.61
1436 1538 5.509716 TCCATCAGAATTCATTCACATGC 57.490 39.130 8.44 0.00 39.23 4.06
1437 1539 6.264518 TCCATCCATCAGAATTCATTCACATG 59.735 38.462 8.44 3.27 39.23 3.21
1438 1540 6.370453 TCCATCCATCAGAATTCATTCACAT 58.630 36.000 8.44 0.00 39.23 3.21
1476 1578 1.065928 CGACGTATCTGCACTCCCC 59.934 63.158 0.00 0.00 0.00 4.81
1477 1579 0.172803 AACGACGTATCTGCACTCCC 59.827 55.000 0.00 0.00 0.00 4.30
1480 1582 3.307829 CGAACGACGTATCTGCACT 57.692 52.632 0.00 0.00 37.22 4.40
1703 1805 4.703093 AGAAAGAGTGGCTAGAGTACTCAC 59.297 45.833 24.44 13.76 42.44 3.51
1704 1806 4.924625 AGAAAGAGTGGCTAGAGTACTCA 58.075 43.478 24.44 9.82 42.44 3.41
1705 1807 4.944930 TGAGAAAGAGTGGCTAGAGTACTC 59.055 45.833 15.41 15.41 40.79 2.59
1706 1808 4.924625 TGAGAAAGAGTGGCTAGAGTACT 58.075 43.478 0.00 0.00 0.00 2.73
1751 1857 3.368531 GGACTGTAGGCTGGAACTTGTAG 60.369 52.174 0.00 0.00 0.00 2.74
1753 1859 1.348036 GGACTGTAGGCTGGAACTTGT 59.652 52.381 0.00 0.00 0.00 3.16
1763 1869 0.462759 GCAGACATGGGACTGTAGGC 60.463 60.000 14.75 0.00 38.75 3.93
1772 1878 3.129502 CGCTGTGGCAGACATGGG 61.130 66.667 0.00 0.00 38.60 4.00
1789 1895 6.810676 GGAGAGAAAGAAAATGGAGAAATTGC 59.189 38.462 0.00 0.00 0.00 3.56
1793 1899 6.006449 CAGGGAGAGAAAGAAAATGGAGAAA 58.994 40.000 0.00 0.00 0.00 2.52
1843 1981 6.373774 ACAGAAGCTTCCTCAGACATATTTTG 59.626 38.462 22.81 11.29 0.00 2.44
1844 1982 6.479884 ACAGAAGCTTCCTCAGACATATTTT 58.520 36.000 22.81 0.00 0.00 1.82
1849 1995 3.326006 TGAACAGAAGCTTCCTCAGACAT 59.674 43.478 22.81 0.00 0.00 3.06
1868 2014 2.835049 TTGACCCCCACCGCATGAA 61.835 57.895 0.00 0.00 0.00 2.57
1974 2120 0.322546 GCCACTCCCTGGGTAAACTG 60.323 60.000 13.56 2.14 41.02 3.16
2084 2237 0.324943 TAGAGCACACCCCTTTCTGC 59.675 55.000 0.00 0.00 0.00 4.26
2086 2239 1.625818 CACTAGAGCACACCCCTTTCT 59.374 52.381 0.00 0.00 0.00 2.52
2145 2298 5.064707 GGAGAATGCTAACAACTTATTCGCA 59.935 40.000 0.00 0.00 34.01 5.10
2157 2310 0.919710 ACCCCCTGGAGAATGCTAAC 59.080 55.000 0.00 0.00 34.81 2.34
2158 2311 1.284785 CAACCCCCTGGAGAATGCTAA 59.715 52.381 0.00 0.00 34.81 3.09
2159 2312 0.918983 CAACCCCCTGGAGAATGCTA 59.081 55.000 0.00 0.00 34.81 3.49
2160 2313 1.693640 CAACCCCCTGGAGAATGCT 59.306 57.895 0.00 0.00 34.81 3.79
2161 2314 2.054453 GCAACCCCCTGGAGAATGC 61.054 63.158 0.00 0.00 34.81 3.56
2263 2416 6.743575 AAACACTCCAGTATAAAGATGCAC 57.256 37.500 0.00 0.00 0.00 4.57
2265 2418 7.145932 ACAAAACACTCCAGTATAAAGATGC 57.854 36.000 0.00 0.00 0.00 3.91
2273 2426 8.537016 TGCTACTAATACAAAACACTCCAGTAT 58.463 33.333 0.00 0.00 0.00 2.12
2278 2431 5.220416 CGCTGCTACTAATACAAAACACTCC 60.220 44.000 0.00 0.00 0.00 3.85
2280 2433 5.235516 ACGCTGCTACTAATACAAAACACT 58.764 37.500 0.00 0.00 0.00 3.55
2281 2434 5.526010 ACGCTGCTACTAATACAAAACAC 57.474 39.130 0.00 0.00 0.00 3.32
2283 2436 6.693342 CACTACGCTGCTACTAATACAAAAC 58.307 40.000 0.00 0.00 0.00 2.43
2300 2453 4.228097 CGCTGCATGGCACTACGC 62.228 66.667 0.00 0.00 41.28 4.42
2319 2472 1.252524 CAAGACAAAAACGTGCTTGCG 59.747 47.619 9.22 0.00 31.06 4.85
2328 2481 5.784750 AGCAAGAAAAGCAAGACAAAAAC 57.215 34.783 0.00 0.00 0.00 2.43
2358 2513 3.393472 CCTAGCTTAGCTTGGCAGG 57.607 57.895 20.40 13.38 43.48 4.85
2394 2552 1.306568 ACTCCAAGCCCTCCTCTCC 60.307 63.158 0.00 0.00 0.00 3.71
2404 2562 0.676151 CCTCAGCCTTCACTCCAAGC 60.676 60.000 0.00 0.00 0.00 4.01
2406 2564 1.661463 ATCCTCAGCCTTCACTCCAA 58.339 50.000 0.00 0.00 0.00 3.53
2498 2656 6.148976 GTCCAAGCTAATCCCGGAAATATAAC 59.851 42.308 0.73 0.00 0.00 1.89
2499 2657 6.235664 GTCCAAGCTAATCCCGGAAATATAA 58.764 40.000 0.73 0.00 0.00 0.98
2501 2659 4.506802 GGTCCAAGCTAATCCCGGAAATAT 60.507 45.833 0.73 0.00 0.00 1.28
2502 2660 3.181448 GGTCCAAGCTAATCCCGGAAATA 60.181 47.826 0.73 0.00 0.00 1.40
2504 2662 1.064979 GGTCCAAGCTAATCCCGGAAA 60.065 52.381 0.73 0.00 0.00 3.13
2505 2663 0.544697 GGTCCAAGCTAATCCCGGAA 59.455 55.000 0.73 0.00 0.00 4.30
2506 2664 0.619255 TGGTCCAAGCTAATCCCGGA 60.619 55.000 0.73 0.00 0.00 5.14
2507 2665 0.463833 GTGGTCCAAGCTAATCCCGG 60.464 60.000 0.00 0.00 0.00 5.73
2508 2666 0.251916 TGTGGTCCAAGCTAATCCCG 59.748 55.000 0.00 0.00 0.00 5.14
2509 2667 1.004277 TGTGTGGTCCAAGCTAATCCC 59.996 52.381 0.00 0.00 0.00 3.85
2585 2744 1.804748 CGGCTCGGTTAAGCTCTTTTT 59.195 47.619 2.76 0.00 42.13 1.94
2688 2861 5.750352 AGAAAGACCGAATAACCTTACCA 57.250 39.130 0.00 0.00 0.00 3.25
2715 2888 3.119352 CCTCAAAAAGATTGGTAGCAGGC 60.119 47.826 0.00 0.00 0.00 4.85
2736 2909 7.574030 GCAGTCCAAGATTAGAAGAAAACTTCC 60.574 40.741 0.00 0.00 34.08 3.46
2834 3010 6.357367 ACATATAGACAAGTGGACCCATTTC 58.643 40.000 0.00 0.00 0.00 2.17
2849 3025 7.751348 CGGCTAGAACAAGACATACATATAGAC 59.249 40.741 0.00 0.00 0.00 2.59
2963 3139 6.015519 CAGGTTATGATTTGAAGGACACCAAA 60.016 38.462 0.00 0.00 36.80 3.28
2964 3140 5.476599 CAGGTTATGATTTGAAGGACACCAA 59.523 40.000 0.00 0.00 0.00 3.67
2965 3141 5.009631 CAGGTTATGATTTGAAGGACACCA 58.990 41.667 0.00 0.00 0.00 4.17
2966 3142 5.253330 TCAGGTTATGATTTGAAGGACACC 58.747 41.667 0.00 0.00 31.12 4.16
2967 3143 6.817765 TTCAGGTTATGATTTGAAGGACAC 57.182 37.500 0.00 0.00 37.89 3.67
2968 3144 8.306038 CAATTTCAGGTTATGATTTGAAGGACA 58.694 33.333 0.00 0.00 37.89 4.02
2969 3145 7.276438 GCAATTTCAGGTTATGATTTGAAGGAC 59.724 37.037 5.66 0.00 37.89 3.85
2970 3146 7.322664 GCAATTTCAGGTTATGATTTGAAGGA 58.677 34.615 5.66 0.00 37.89 3.36
2971 3147 6.536224 GGCAATTTCAGGTTATGATTTGAAGG 59.464 38.462 0.00 0.00 37.89 3.46
3153 3331 4.344865 GGGCCGGGCACTTCTCAA 62.345 66.667 30.95 0.00 0.00 3.02
3169 3348 5.934402 TTACCTTAGCTTCAACTCCTAGG 57.066 43.478 0.82 0.82 0.00 3.02
3294 3473 3.129852 TGGCAAAAGATAATGCGTTCG 57.870 42.857 0.00 0.00 43.47 3.95
3409 3889 1.069703 CAGACAAACACATGACAGGCG 60.070 52.381 0.00 0.00 0.00 5.52
3433 3913 4.153475 CCGTGGCTAAATATATCCAAACCG 59.847 45.833 0.00 0.00 29.44 4.44
3454 3934 3.854414 GCAACATTCACCATGCATATCCG 60.854 47.826 0.00 0.00 38.63 4.18
3473 3953 5.606348 ACCAAGAACACCTAAATTTGCAA 57.394 34.783 0.00 0.00 0.00 4.08
3513 3993 5.538433 CCTTCTCATTCTTCCTAGTCCCTAG 59.462 48.000 0.00 0.00 34.16 3.02
3514 3994 5.459505 CCTTCTCATTCTTCCTAGTCCCTA 58.540 45.833 0.00 0.00 0.00 3.53
3515 3995 4.294347 CCTTCTCATTCTTCCTAGTCCCT 58.706 47.826 0.00 0.00 0.00 4.20
3516 3996 3.389656 CCCTTCTCATTCTTCCTAGTCCC 59.610 52.174 0.00 0.00 0.00 4.46
3517 3997 4.290942 TCCCTTCTCATTCTTCCTAGTCC 58.709 47.826 0.00 0.00 0.00 3.85
3518 3998 6.098982 TCAATCCCTTCTCATTCTTCCTAGTC 59.901 42.308 0.00 0.00 0.00 2.59
3525 4005 6.838401 AGGTATCAATCCCTTCTCATTCTT 57.162 37.500 0.00 0.00 0.00 2.52
3530 4010 6.215431 TCAGAAAAGGTATCAATCCCTTCTCA 59.785 38.462 0.00 0.00 40.17 3.27
3549 4029 7.782049 AGACATGAACGGTATCTAATCAGAAA 58.218 34.615 0.00 0.00 33.50 2.52
3552 4032 8.300286 ACATAGACATGAACGGTATCTAATCAG 58.700 37.037 0.00 0.00 35.96 2.90
3585 4065 7.666063 TTCCAGAGAAGAGATGATGTTATCA 57.334 36.000 0.00 0.00 44.55 2.15
3602 4082 5.046950 ACTTTCTAGGTAGCAACTTCCAGAG 60.047 44.000 0.00 0.00 0.00 3.35
3622 4122 8.947055 AAAGTGAAGCAAATGAATGTAACTTT 57.053 26.923 0.00 0.00 0.00 2.66
3665 4166 2.283298 GTGTGAAGATGGTGCGATGAT 58.717 47.619 0.00 0.00 0.00 2.45
3671 4172 2.430465 AGACATGTGTGAAGATGGTGC 58.570 47.619 1.15 0.00 0.00 5.01
3674 4175 5.392703 CCATTGAAGACATGTGTGAAGATGG 60.393 44.000 1.15 8.17 0.00 3.51
3706 4207 6.753180 TGAGATGAACATTAGCTAGTCATCC 58.247 40.000 22.35 17.50 34.70 3.51
3707 4208 8.710551 CAATGAGATGAACATTAGCTAGTCATC 58.289 37.037 20.35 20.35 36.40 2.92
3708 4209 8.209584 ACAATGAGATGAACATTAGCTAGTCAT 58.790 33.333 9.68 9.68 36.40 3.06
3709 4210 7.493645 CACAATGAGATGAACATTAGCTAGTCA 59.506 37.037 0.00 0.00 36.40 3.41
3716 4217 5.575957 GGCACACAATGAGATGAACATTAG 58.424 41.667 0.00 0.00 36.40 1.73
3739 4240 0.531532 AGATTCTGAGCAATCGCCCG 60.532 55.000 0.00 0.00 37.77 6.13
3741 4242 2.283298 TGAAGATTCTGAGCAATCGCC 58.717 47.619 0.00 0.00 37.77 5.54
3771 4278 6.209391 CCCTAGTGACACTTTTCAATTTGGAT 59.791 38.462 14.50 0.00 0.00 3.41
3836 4348 4.998672 CCCATTGACACCGACTAGTTTTTA 59.001 41.667 0.00 0.00 0.00 1.52
3902 4414 0.528924 TGTTATCCACCTGTCGTCGG 59.471 55.000 0.00 0.00 0.00 4.79
3995 4507 4.637387 TTTCAATTTTCCATGGCCACAT 57.363 36.364 8.16 0.00 37.99 3.21
4035 4547 4.159693 TCACGGCACTAATCAATGTAGTCT 59.840 41.667 0.00 0.00 29.12 3.24
4048 4560 3.749088 CCACAAGTAAAATCACGGCACTA 59.251 43.478 0.00 0.00 0.00 2.74
4069 4581 0.716108 CGTCAGTGAATGAAGCGACC 59.284 55.000 0.00 0.00 40.43 4.79
4150 4663 4.217035 CCGGATGGCGAATGTCAA 57.783 55.556 0.00 0.00 30.39 3.18
4203 4716 3.429141 GAGTCGTCGTCGGAGCCA 61.429 66.667 1.55 0.00 37.69 4.75
4293 4806 4.717629 TTGCTGCCCTCGTCGTCG 62.718 66.667 0.00 0.00 38.55 5.12
4360 4873 2.685380 CTTCCTCCTGGACGGCCT 60.685 66.667 9.82 0.00 43.06 5.19
4432 4945 4.207165 AGTAGCATTGTCACTTTTGGTGT 58.793 39.130 0.00 0.00 45.50 4.16
4481 4994 0.696143 TCAGTCCCAAGTCCCAACCA 60.696 55.000 0.00 0.00 0.00 3.67
4504 5017 8.311395 TGATCTTACTAACTGGATCACTTCAT 57.689 34.615 0.00 0.00 39.37 2.57
4662 5177 3.857038 CCCCATGCATGCCCTTGC 61.857 66.667 21.69 0.00 43.07 4.01
4663 5178 3.158648 CCCCCATGCATGCCCTTG 61.159 66.667 21.69 10.17 0.00 3.61
4701 5216 7.149569 TCTTCACCTTATTTTCTGCATGAAG 57.850 36.000 11.37 11.37 41.94 3.02
4978 5494 0.765510 AGGCAAAGTCCTCGTCCTTT 59.234 50.000 0.00 0.00 0.00 3.11
4981 5497 4.600207 GAGGCAAAGTCCTCGTCC 57.400 61.111 0.00 0.00 42.74 4.79
5006 5522 1.993542 CAGCAGCAACAACAACAACA 58.006 45.000 0.00 0.00 0.00 3.33
5007 5523 0.646895 GCAGCAGCAACAACAACAAC 59.353 50.000 0.00 0.00 41.58 3.32
5008 5524 0.531657 AGCAGCAGCAACAACAACAA 59.468 45.000 3.17 0.00 45.49 2.83
5009 5525 0.179132 CAGCAGCAGCAACAACAACA 60.179 50.000 3.17 0.00 45.49 3.33
5010 5526 1.485032 GCAGCAGCAGCAACAACAAC 61.485 55.000 4.63 0.00 45.49 3.32
5011 5527 1.227031 GCAGCAGCAGCAACAACAA 60.227 52.632 4.63 0.00 45.49 2.83
5012 5528 2.122797 AGCAGCAGCAGCAACAACA 61.123 52.632 12.92 0.00 45.49 3.33
5013 5529 1.660575 CAGCAGCAGCAGCAACAAC 60.661 57.895 12.92 0.00 45.49 3.32
5014 5530 2.725641 CAGCAGCAGCAGCAACAA 59.274 55.556 12.92 0.00 45.49 2.83
5025 5541 3.489731 TGCAATAGTCGCAGCAGC 58.510 55.556 0.00 0.00 33.55 5.25
5082 5598 6.151144 AGTCATTTATTTTGGAACGGAGGAAG 59.849 38.462 0.00 0.00 0.00 3.46
5083 5599 6.007703 AGTCATTTATTTTGGAACGGAGGAA 58.992 36.000 0.00 0.00 0.00 3.36
5084 5600 5.566469 AGTCATTTATTTTGGAACGGAGGA 58.434 37.500 0.00 0.00 0.00 3.71
5085 5601 5.414454 TGAGTCATTTATTTTGGAACGGAGG 59.586 40.000 0.00 0.00 0.00 4.30
5086 5602 6.494893 TGAGTCATTTATTTTGGAACGGAG 57.505 37.500 0.00 0.00 0.00 4.63
5087 5603 6.488683 AGTTGAGTCATTTATTTTGGAACGGA 59.511 34.615 0.00 0.00 0.00 4.69
5088 5604 6.677913 AGTTGAGTCATTTATTTTGGAACGG 58.322 36.000 0.00 0.00 0.00 4.44
5089 5605 9.840427 ATAAGTTGAGTCATTTATTTTGGAACG 57.160 29.630 0.00 0.00 0.00 3.95
5109 5625 9.828039 CCCTTCGTCCTAAAATTAGTATAAGTT 57.172 33.333 0.00 0.00 0.00 2.66
5110 5626 9.205513 TCCCTTCGTCCTAAAATTAGTATAAGT 57.794 33.333 0.00 0.00 0.00 2.24
5111 5627 9.694137 CTCCCTTCGTCCTAAAATTAGTATAAG 57.306 37.037 0.00 0.00 0.00 1.73
5112 5628 9.205513 ACTCCCTTCGTCCTAAAATTAGTATAA 57.794 33.333 0.00 0.00 0.00 0.98
5113 5629 8.773033 ACTCCCTTCGTCCTAAAATTAGTATA 57.227 34.615 0.00 0.00 0.00 1.47
5114 5630 7.672122 ACTCCCTTCGTCCTAAAATTAGTAT 57.328 36.000 0.00 0.00 0.00 2.12
5115 5631 8.773033 ATACTCCCTTCGTCCTAAAATTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
5116 5632 7.672122 ATACTCCCTTCGTCCTAAAATTAGT 57.328 36.000 0.00 0.00 0.00 2.24
5117 5633 9.640963 CATATACTCCCTTCGTCCTAAAATTAG 57.359 37.037 0.00 0.00 0.00 1.73
5118 5634 9.370930 TCATATACTCCCTTCGTCCTAAAATTA 57.629 33.333 0.00 0.00 0.00 1.40
5119 5635 8.258850 TCATATACTCCCTTCGTCCTAAAATT 57.741 34.615 0.00 0.00 0.00 1.82
5120 5636 7.850935 TCATATACTCCCTTCGTCCTAAAAT 57.149 36.000 0.00 0.00 0.00 1.82
5121 5637 7.664552 TTCATATACTCCCTTCGTCCTAAAA 57.335 36.000 0.00 0.00 0.00 1.52
5122 5638 7.850935 ATTCATATACTCCCTTCGTCCTAAA 57.149 36.000 0.00 0.00 0.00 1.85
5123 5639 7.850935 AATTCATATACTCCCTTCGTCCTAA 57.149 36.000 0.00 0.00 0.00 2.69
5124 5640 8.967918 CATAATTCATATACTCCCTTCGTCCTA 58.032 37.037 0.00 0.00 0.00 2.94
5125 5641 7.579723 GCATAATTCATATACTCCCTTCGTCCT 60.580 40.741 0.00 0.00 0.00 3.85
5126 5642 6.535508 GCATAATTCATATACTCCCTTCGTCC 59.464 42.308 0.00 0.00 0.00 4.79
5127 5643 6.253727 CGCATAATTCATATACTCCCTTCGTC 59.746 42.308 0.00 0.00 0.00 4.20
5128 5644 6.100004 CGCATAATTCATATACTCCCTTCGT 58.900 40.000 0.00 0.00 0.00 3.85
5129 5645 5.005779 GCGCATAATTCATATACTCCCTTCG 59.994 44.000 0.30 0.00 0.00 3.79
5130 5646 6.036517 CAGCGCATAATTCATATACTCCCTTC 59.963 42.308 11.47 0.00 0.00 3.46
5131 5647 5.877012 CAGCGCATAATTCATATACTCCCTT 59.123 40.000 11.47 0.00 0.00 3.95
5132 5648 5.423015 CAGCGCATAATTCATATACTCCCT 58.577 41.667 11.47 0.00 0.00 4.20
5133 5649 4.572389 CCAGCGCATAATTCATATACTCCC 59.428 45.833 11.47 0.00 0.00 4.30
5134 5650 4.034510 GCCAGCGCATAATTCATATACTCC 59.965 45.833 11.47 0.00 34.03 3.85
5135 5651 4.259970 CGCCAGCGCATAATTCATATACTC 60.260 45.833 11.47 0.00 34.03 2.59
5136 5652 3.618594 CGCCAGCGCATAATTCATATACT 59.381 43.478 11.47 0.00 34.03 2.12
5137 5653 3.928211 CGCCAGCGCATAATTCATATAC 58.072 45.455 11.47 0.00 34.03 1.47
5225 5741 1.536284 GCCGTCATAGTACCAGCACTC 60.536 57.143 0.00 0.00 0.00 3.51
5305 5821 4.383351 GCATACCGCAAACAAAATTTACGT 59.617 37.500 0.00 0.00 41.79 3.57
5315 5831 2.177394 TTGAGAGCATACCGCAAACA 57.823 45.000 0.00 0.00 46.13 2.83
5332 5849 2.837878 CACGATACCGCAAATTCGTTTG 59.162 45.455 0.00 0.00 42.42 2.93
5352 5869 1.153269 TGTTCTGCCGTGTCTTGCA 60.153 52.632 0.00 0.00 35.86 4.08
5369 5886 9.616634 ATTTGCATTATCGTTTTAGCATATCTG 57.383 29.630 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.