Multiple sequence alignment - TraesCS7A01G394400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G394400 chr7A 100.000 9765 0 0 1 9765 572498817 572489053 0.000000e+00 18033.0
1 TraesCS7A01G394400 chr7A 95.928 221 8 1 162 381 307084795 307084575 3.350000e-94 357.0
2 TraesCS7A01G394400 chr7A 81.915 188 29 4 8385 8571 572490361 572490178 4.720000e-33 154.0
3 TraesCS7A01G394400 chr7A 81.915 188 29 4 8457 8640 572490433 572490247 4.720000e-33 154.0
4 TraesCS7A01G394400 chr7A 77.632 152 30 2 6198 6345 731054611 731054762 1.350000e-13 89.8
5 TraesCS7A01G394400 chr7A 76.871 147 30 2 6203 6345 731464454 731464600 8.130000e-11 80.5
6 TraesCS7A01G394400 chr7D 95.378 4890 163 32 2125 6984 504834428 504829572 0.000000e+00 7720.0
7 TraesCS7A01G394400 chr7D 96.446 2504 80 8 6982 9482 504829480 504826983 0.000000e+00 4122.0
8 TraesCS7A01G394400 chr7D 90.803 1544 77 19 431 1920 504836406 504834874 0.000000e+00 2004.0
9 TraesCS7A01G394400 chr7D 94.466 253 14 0 1929 2181 504834732 504834480 3.310000e-104 390.0
10 TraesCS7A01G394400 chr7D 95.349 215 9 1 9521 9734 504826982 504826768 3.380000e-89 340.0
11 TraesCS7A01G394400 chr7D 79.608 255 48 4 7160 7412 46152171 46151919 7.790000e-41 180.0
12 TraesCS7A01G394400 chr7D 80.342 234 36 7 8342 8572 504828050 504827824 1.690000e-37 169.0
13 TraesCS7A01G394400 chr7D 81.915 188 29 3 8457 8640 504828080 504827894 4.720000e-33 154.0
14 TraesCS7A01G394400 chr7B 96.613 4340 113 17 1929 6264 532669959 532665650 0.000000e+00 7169.0
15 TraesCS7A01G394400 chr7B 91.415 1526 79 16 431 1920 532671611 532670102 0.000000e+00 2045.0
16 TraesCS7A01G394400 chr7B 96.524 1237 36 4 8331 9563 532664272 532663039 0.000000e+00 2039.0
17 TraesCS7A01G394400 chr7B 92.862 1415 68 17 7027 8435 532665519 532664132 0.000000e+00 2023.0
18 TraesCS7A01G394400 chr7B 95.909 220 9 0 162 381 648055894 648055675 3.350000e-94 357.0
19 TraesCS7A01G394400 chr7B 95.111 225 10 1 163 387 154679050 154678827 4.340000e-93 353.0
20 TraesCS7A01G394400 chr7B 95.484 155 6 1 9560 9713 532662917 532662763 7.570000e-61 246.0
21 TraesCS7A01G394400 chr7B 83.598 189 24 5 8457 8640 532664218 532664032 4.690000e-38 171.0
22 TraesCS7A01G394400 chr7B 79.487 234 38 7 8342 8572 532664188 532663962 3.650000e-34 158.0
23 TraesCS7A01G394400 chr5A 96.380 221 8 0 163 383 680118003 680118223 2.000000e-96 364.0
24 TraesCS7A01G394400 chr5A 96.347 219 8 0 163 381 100641994 100642212 2.590000e-95 361.0
25 TraesCS7A01G394400 chr5A 98.182 165 3 0 1 165 180144596 180144432 1.240000e-73 289.0
26 TraesCS7A01G394400 chr5D 95.197 229 9 2 163 391 439659561 439659335 2.590000e-95 361.0
27 TraesCS7A01G394400 chr5D 95.154 227 8 2 163 386 164651736 164651510 1.210000e-93 355.0
28 TraesCS7A01G394400 chr5D 93.991 233 13 1 150 381 7044185 7044417 1.560000e-92 351.0
29 TraesCS7A01G394400 chr5D 80.000 120 18 4 6198 6312 399625904 399626022 6.280000e-12 84.2
30 TraesCS7A01G394400 chr5D 92.857 42 2 1 9111 9151 456610930 456610971 1.060000e-04 60.2
31 TraesCS7A01G394400 chr3B 94.737 228 10 2 163 390 389035754 389035529 4.340000e-93 353.0
32 TraesCS7A01G394400 chr4B 98.182 165 3 0 1 165 564207068 564206904 1.240000e-73 289.0
33 TraesCS7A01G394400 chr4B 97.576 165 4 0 1 165 604047261 604047097 5.770000e-72 283.0
34 TraesCS7A01G394400 chr4A 98.182 165 3 0 1 165 601335881 601336045 1.240000e-73 289.0
35 TraesCS7A01G394400 chr4A 92.683 41 2 1 7314 7353 602638246 602638206 3.810000e-04 58.4
36 TraesCS7A01G394400 chr2B 97.590 166 4 0 1 166 666454464 666454629 1.610000e-72 285.0
37 TraesCS7A01G394400 chr2B 100.000 32 0 0 9155 9186 634179982 634179951 1.060000e-04 60.2
38 TraesCS7A01G394400 chrUn 97.576 165 4 0 1 165 13888307 13888471 5.770000e-72 283.0
39 TraesCS7A01G394400 chr6A 97.576 165 4 0 1 165 38758058 38757894 5.770000e-72 283.0
40 TraesCS7A01G394400 chr6A 97.576 165 4 0 1 165 371732428 371732592 5.770000e-72 283.0
41 TraesCS7A01G394400 chr6A 80.240 334 44 13 7100 7414 485699553 485699223 2.120000e-56 231.0
42 TraesCS7A01G394400 chr1A 97.576 165 4 0 1 165 285506476 285506640 5.770000e-72 283.0
43 TraesCS7A01G394400 chr1A 90.411 73 7 0 9117 9189 85841935 85842007 8.070000e-16 97.1
44 TraesCS7A01G394400 chr5B 92.771 83 5 1 9108 9189 264874326 264874244 1.720000e-22 119.0
45 TraesCS7A01G394400 chr5B 81.373 102 16 3 7314 7414 145020113 145020212 8.130000e-11 80.5
46 TraesCS7A01G394400 chr2D 82.353 102 14 3 7314 7413 11459145 11459046 1.750000e-12 86.1
47 TraesCS7A01G394400 chr2A 87.500 72 9 0 9117 9188 570013495 570013424 6.280000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G394400 chr7A 572489053 572498817 9764 True 18033.000000 18033 100.000000 1 9765 1 chr7A.!!$R2 9764
1 TraesCS7A01G394400 chr7D 504826768 504836406 9638 True 2128.428571 7720 90.671286 431 9734 7 chr7D.!!$R2 9303
2 TraesCS7A01G394400 chr7B 532662763 532671611 8848 True 1978.714286 7169 90.854714 431 9713 7 chr7B.!!$R3 9282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.102481 CAAGTCCTGCGCGTATACCT 59.898 55.000 8.43 0.00 0.00 3.08 F
206 207 0.179009 TCCTGCGCGTATACCTAGGT 60.179 55.000 20.57 20.57 0.00 3.08 F
209 210 0.249155 TGCGCGTATACCTAGGTTGC 60.249 55.000 22.11 17.41 0.00 4.17 F
369 370 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27 F
1937 2132 0.676782 AGCAATTTCGCCGGCTTACT 60.677 50.000 26.68 9.07 31.34 2.24 F
2080 2275 1.798223 CGCCGTTTTCTTGTGATCTCA 59.202 47.619 0.00 0.00 0.00 3.27 F
3336 3649 1.051008 TCAGTGCCAGACTCATGTGT 58.949 50.000 0.00 0.00 29.75 3.72 F
4247 4571 2.892425 GCCGAGTGGAGGAATGCG 60.892 66.667 0.00 0.00 37.49 4.73 F
4472 4796 2.918131 GCGCAAAAGACATGAAGACACC 60.918 50.000 0.30 0.00 0.00 4.16 F
5955 6284 0.309302 TTGTTTCGTTGCATGGTCCG 59.691 50.000 0.00 0.00 0.00 4.79 F
6691 7028 0.097674 GGAACGTGATGTGCTGATGC 59.902 55.000 0.00 0.00 40.20 3.91 F
6987 7419 0.027586 GTAATGATGGTTCGCCGTGC 59.972 55.000 0.00 0.00 41.18 5.34 F
7452 7926 0.256464 ACCCACGAACCCTGAAACAA 59.744 50.000 0.00 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1825 0.033504 AACTGGGCAGTGTCGTACAG 59.966 55.000 0.00 0.00 41.58 2.74 R
1925 1986 2.803956 GCAATAATAAGTAAGCCGGCGA 59.196 45.455 23.20 10.93 0.00 5.54 R
2080 2275 3.004315 ACATTTTCAGCGAAAACCACGAT 59.996 39.130 15.32 0.00 42.98 3.73 R
2360 2669 2.777459 CCCAGGGGTACTCTAGTCAT 57.223 55.000 0.00 0.00 0.00 3.06 R
3300 3613 2.026822 ACTGAAGATGCCGACCTGAATT 60.027 45.455 0.00 0.00 0.00 2.17 R
3395 3708 2.108075 TGGTGCTTTGGAGAGAATGGAA 59.892 45.455 0.00 0.00 0.00 3.53 R
4645 4970 0.040067 CGTCAGCTCCCTTGTTTTGC 60.040 55.000 0.00 0.00 0.00 3.68 R
5723 6050 1.279496 CCCTCTCAGACAATGTGGGA 58.721 55.000 0.00 0.00 37.26 4.37 R
6354 6683 0.504384 CGCGAGCGGTTCAAGATATG 59.496 55.000 9.90 0.00 35.56 1.78 R
6879 7217 1.075542 CAAACGAGATACCGCAAGCA 58.924 50.000 0.00 0.00 0.00 3.91 R
8435 8911 0.387565 GTTTTTGGAGCCTTTGCGGA 59.612 50.000 0.00 0.00 44.33 5.54 R
8608 9084 1.340405 GCCTGCTTCTTTCCATCTGGA 60.340 52.381 0.00 0.00 43.73 3.86 R
9244 9723 0.179089 CAGGAGGGCAGACTGATTCG 60.179 60.000 6.65 0.00 34.21 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
23 24 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
24 25 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
25 26 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
26 27 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
27 28 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
28 29 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
29 30 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
30 31 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
31 32 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
32 33 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
33 34 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
34 35 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
35 36 5.772672 TCCAATACAACTTTGCTTATGTGGT 59.227 36.000 0.00 0.00 0.00 4.16
36 37 6.943146 TCCAATACAACTTTGCTTATGTGGTA 59.057 34.615 0.00 0.00 0.00 3.25
37 38 7.027161 CCAATACAACTTTGCTTATGTGGTAC 58.973 38.462 0.00 0.00 0.00 3.34
38 39 7.308891 CCAATACAACTTTGCTTATGTGGTACA 60.309 37.037 0.00 0.00 0.00 2.90
39 40 7.938140 ATACAACTTTGCTTATGTGGTACAT 57.062 32.000 0.00 0.00 44.52 2.29
40 41 9.456147 AATACAACTTTGCTTATGTGGTACATA 57.544 29.630 0.00 0.00 44.52 2.29
41 42 7.938140 ACAACTTTGCTTATGTGGTACATAT 57.062 32.000 2.81 0.00 44.52 1.78
42 43 8.348285 ACAACTTTGCTTATGTGGTACATATT 57.652 30.769 2.81 0.00 44.52 1.28
43 44 8.802267 ACAACTTTGCTTATGTGGTACATATTT 58.198 29.630 2.81 0.00 44.52 1.40
57 58 9.482627 GTGGTACATATTTAATGAAGAGAGAGG 57.517 37.037 0.00 0.00 44.52 3.69
58 59 9.213777 TGGTACATATTTAATGAAGAGAGAGGT 57.786 33.333 0.00 0.00 0.00 3.85
59 60 9.482627 GGTACATATTTAATGAAGAGAGAGGTG 57.517 37.037 0.00 0.00 0.00 4.00
60 61 8.983724 GTACATATTTAATGAAGAGAGAGGTGC 58.016 37.037 0.00 0.00 0.00 5.01
61 62 7.800092 ACATATTTAATGAAGAGAGAGGTGCT 58.200 34.615 0.00 0.00 0.00 4.40
62 63 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
63 64 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
64 65 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
65 66 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
66 67 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
67 68 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
68 69 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
69 70 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
70 71 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
71 72 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
72 73 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
73 74 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
90 91 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
91 92 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
92 93 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
93 94 4.755266 AGCTAAGTTACCGGAACATCAT 57.245 40.909 9.46 0.00 40.86 2.45
94 95 5.864418 AGCTAAGTTACCGGAACATCATA 57.136 39.130 9.46 0.92 40.86 2.15
95 96 5.598769 AGCTAAGTTACCGGAACATCATAC 58.401 41.667 9.46 0.00 40.86 2.39
96 97 5.128171 AGCTAAGTTACCGGAACATCATACA 59.872 40.000 9.46 0.00 40.86 2.29
97 98 5.233689 GCTAAGTTACCGGAACATCATACAC 59.766 44.000 9.46 0.00 40.86 2.90
98 99 5.416271 AAGTTACCGGAACATCATACACT 57.584 39.130 9.46 0.00 40.86 3.55
99 100 5.007385 AGTTACCGGAACATCATACACTC 57.993 43.478 9.46 0.00 40.86 3.51
100 101 2.981859 ACCGGAACATCATACACTCC 57.018 50.000 9.46 0.00 0.00 3.85
101 102 2.184533 ACCGGAACATCATACACTCCA 58.815 47.619 9.46 0.00 0.00 3.86
102 103 2.569853 ACCGGAACATCATACACTCCAA 59.430 45.455 9.46 0.00 0.00 3.53
103 104 3.008594 ACCGGAACATCATACACTCCAAA 59.991 43.478 9.46 0.00 0.00 3.28
104 105 4.006989 CCGGAACATCATACACTCCAAAA 58.993 43.478 0.00 0.00 0.00 2.44
105 106 4.457603 CCGGAACATCATACACTCCAAAAA 59.542 41.667 0.00 0.00 0.00 1.94
144 145 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
145 146 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
146 147 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
147 148 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
148 149 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
149 150 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
150 151 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
151 152 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
152 153 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
153 154 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
154 155 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
155 156 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
156 157 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
157 158 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
158 159 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
159 160 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
160 161 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
161 162 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
162 163 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
163 164 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
164 165 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
165 166 7.470702 GCATGACACTACATAGATGTTCCTACT 60.471 40.741 0.00 0.00 41.97 2.57
166 167 9.067986 CATGACACTACATAGATGTTCCTACTA 57.932 37.037 0.00 0.00 41.97 1.82
167 168 8.447924 TGACACTACATAGATGTTCCTACTAC 57.552 38.462 0.00 0.00 41.97 2.73
168 169 7.501559 TGACACTACATAGATGTTCCTACTACC 59.498 40.741 0.00 0.00 41.97 3.18
169 170 7.584532 ACACTACATAGATGTTCCTACTACCT 58.415 38.462 0.00 0.00 41.97 3.08
170 171 7.720515 ACACTACATAGATGTTCCTACTACCTC 59.279 40.741 0.00 0.00 41.97 3.85
171 172 7.175293 CACTACATAGATGTTCCTACTACCTCC 59.825 44.444 0.00 0.00 41.97 4.30
172 173 5.071370 ACATAGATGTTCCTACTACCTCCG 58.929 45.833 0.00 0.00 37.90 4.63
173 174 3.666345 AGATGTTCCTACTACCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
174 175 3.978610 AGATGTTCCTACTACCTCCGTT 58.021 45.455 0.00 0.00 0.00 4.44
175 176 4.351127 AGATGTTCCTACTACCTCCGTTT 58.649 43.478 0.00 0.00 0.00 3.60
176 177 4.401837 AGATGTTCCTACTACCTCCGTTTC 59.598 45.833 0.00 0.00 0.00 2.78
177 178 3.499338 TGTTCCTACTACCTCCGTTTCA 58.501 45.455 0.00 0.00 0.00 2.69
178 179 3.508793 TGTTCCTACTACCTCCGTTTCAG 59.491 47.826 0.00 0.00 0.00 3.02
179 180 3.446442 TCCTACTACCTCCGTTTCAGT 57.554 47.619 0.00 0.00 0.00 3.41
180 181 3.771216 TCCTACTACCTCCGTTTCAGTT 58.229 45.455 0.00 0.00 0.00 3.16
181 182 4.154942 TCCTACTACCTCCGTTTCAGTTT 58.845 43.478 0.00 0.00 0.00 2.66
182 183 5.324409 TCCTACTACCTCCGTTTCAGTTTA 58.676 41.667 0.00 0.00 0.00 2.01
183 184 5.183904 TCCTACTACCTCCGTTTCAGTTTAC 59.816 44.000 0.00 0.00 0.00 2.01
184 185 4.942761 ACTACCTCCGTTTCAGTTTACA 57.057 40.909 0.00 0.00 0.00 2.41
185 186 5.280654 ACTACCTCCGTTTCAGTTTACAA 57.719 39.130 0.00 0.00 0.00 2.41
186 187 5.295152 ACTACCTCCGTTTCAGTTTACAAG 58.705 41.667 0.00 0.00 0.00 3.16
187 188 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
188 189 4.124970 ACCTCCGTTTCAGTTTACAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
189 190 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
190 191 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
191 192 4.124238 TCCGTTTCAGTTTACAAGTCCTG 58.876 43.478 0.00 0.00 0.00 3.86
192 193 3.303791 CCGTTTCAGTTTACAAGTCCTGC 60.304 47.826 0.00 0.00 0.00 4.85
193 194 3.603857 CGTTTCAGTTTACAAGTCCTGCG 60.604 47.826 0.00 0.00 0.00 5.18
194 195 1.508632 TCAGTTTACAAGTCCTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
195 196 0.163788 CAGTTTACAAGTCCTGCGCG 59.836 55.000 0.00 0.00 0.00 6.86
196 197 0.249741 AGTTTACAAGTCCTGCGCGT 60.250 50.000 8.43 0.00 0.00 6.01
197 198 1.000060 AGTTTACAAGTCCTGCGCGTA 60.000 47.619 8.43 0.71 0.00 4.42
198 199 1.997606 GTTTACAAGTCCTGCGCGTAT 59.002 47.619 8.43 0.00 0.00 3.06
199 200 3.119388 AGTTTACAAGTCCTGCGCGTATA 60.119 43.478 8.43 0.00 0.00 1.47
200 201 2.480224 TACAAGTCCTGCGCGTATAC 57.520 50.000 8.43 4.74 0.00 1.47
201 202 0.179119 ACAAGTCCTGCGCGTATACC 60.179 55.000 8.43 0.00 0.00 2.73
202 203 0.102481 CAAGTCCTGCGCGTATACCT 59.898 55.000 8.43 0.00 0.00 3.08
203 204 1.335810 CAAGTCCTGCGCGTATACCTA 59.664 52.381 8.43 0.00 0.00 3.08
204 205 1.236628 AGTCCTGCGCGTATACCTAG 58.763 55.000 8.43 0.00 0.00 3.02
205 206 0.240411 GTCCTGCGCGTATACCTAGG 59.760 60.000 7.41 7.41 0.00 3.02
206 207 0.179009 TCCTGCGCGTATACCTAGGT 60.179 55.000 20.57 20.57 0.00 3.08
207 208 0.672342 CCTGCGCGTATACCTAGGTT 59.328 55.000 22.11 10.62 0.00 3.50
208 209 1.602165 CCTGCGCGTATACCTAGGTTG 60.602 57.143 22.11 9.15 0.00 3.77
209 210 0.249155 TGCGCGTATACCTAGGTTGC 60.249 55.000 22.11 17.41 0.00 4.17
210 211 0.942884 GCGCGTATACCTAGGTTGCC 60.943 60.000 22.11 7.02 0.00 4.52
211 212 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
212 213 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
213 214 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
214 215 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
215 216 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
216 217 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
217 218 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
218 219 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
219 220 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
220 221 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
221 222 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
222 223 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
223 224 4.709397 CCTAGGTTGCCAATTTTATCACCA 59.291 41.667 0.00 0.00 0.00 4.17
224 225 5.363580 CCTAGGTTGCCAATTTTATCACCAT 59.636 40.000 0.00 0.00 0.00 3.55
225 226 6.549364 CCTAGGTTGCCAATTTTATCACCATA 59.451 38.462 0.00 0.00 0.00 2.74
226 227 6.865834 AGGTTGCCAATTTTATCACCATAA 57.134 33.333 0.00 0.00 0.00 1.90
227 228 7.436320 AGGTTGCCAATTTTATCACCATAAT 57.564 32.000 0.00 0.00 0.00 1.28
228 229 8.546083 AGGTTGCCAATTTTATCACCATAATA 57.454 30.769 0.00 0.00 0.00 0.98
229 230 9.158097 AGGTTGCCAATTTTATCACCATAATAT 57.842 29.630 0.00 0.00 0.00 1.28
275 276 7.668525 ATACCTTTTGAAAGTAGAAACTCCG 57.331 36.000 3.09 0.00 33.75 4.63
276 277 5.677567 ACCTTTTGAAAGTAGAAACTCCGA 58.322 37.500 3.09 0.00 33.75 4.55
277 278 6.117488 ACCTTTTGAAAGTAGAAACTCCGAA 58.883 36.000 3.09 0.00 33.75 4.30
278 279 6.260271 ACCTTTTGAAAGTAGAAACTCCGAAG 59.740 38.462 3.09 0.00 33.75 3.79
279 280 6.260271 CCTTTTGAAAGTAGAAACTCCGAAGT 59.740 38.462 3.09 0.00 33.75 3.01
280 281 7.201705 CCTTTTGAAAGTAGAAACTCCGAAGTT 60.202 37.037 3.09 0.00 39.62 2.66
295 296 9.457436 AACTCCGAAGTTTATGTTGGTATATTT 57.543 29.630 0.00 0.00 43.28 1.40
296 297 9.457436 ACTCCGAAGTTTATGTTGGTATATTTT 57.543 29.630 0.00 0.00 28.74 1.82
343 344 7.996385 AGATTGGTCAAATTAACGATTTAGGG 58.004 34.615 0.00 0.00 35.79 3.53
344 345 7.832187 AGATTGGTCAAATTAACGATTTAGGGA 59.168 33.333 0.00 0.00 35.79 4.20
345 346 7.948034 TTGGTCAAATTAACGATTTAGGGAT 57.052 32.000 0.00 0.00 35.79 3.85
346 347 9.635404 ATTGGTCAAATTAACGATTTAGGGATA 57.365 29.630 0.00 0.00 35.79 2.59
347 348 8.441312 TGGTCAAATTAACGATTTAGGGATAC 57.559 34.615 0.00 0.00 35.79 2.24
348 349 7.225145 TGGTCAAATTAACGATTTAGGGATACG 59.775 37.037 0.00 0.00 35.79 3.06
349 350 7.067728 GTCAAATTAACGATTTAGGGATACGC 58.932 38.462 0.00 0.00 35.79 4.42
350 351 5.834239 AATTAACGATTTAGGGATACGCG 57.166 39.130 3.53 3.53 37.60 6.01
351 352 1.494824 AACGATTTAGGGATACGCGC 58.505 50.000 5.73 0.00 37.60 6.86
352 353 0.386476 ACGATTTAGGGATACGCGCA 59.614 50.000 5.73 0.00 37.60 6.09
353 354 0.782384 CGATTTAGGGATACGCGCAC 59.218 55.000 5.73 0.00 37.60 5.34
355 356 1.219522 ATTTAGGGATACGCGCACGC 61.220 55.000 5.73 4.64 45.53 5.34
356 357 3.778360 TTAGGGATACGCGCACGCC 62.778 63.158 5.73 2.11 45.53 5.68
361 362 3.761445 GATACGCGCACGCCCTGTA 62.761 63.158 5.73 6.59 45.53 2.74
362 363 3.359515 ATACGCGCACGCCCTGTAA 62.360 57.895 5.73 0.00 45.53 2.41
363 364 2.839043 ATACGCGCACGCCCTGTAAA 62.839 55.000 5.73 0.00 45.53 2.01
364 365 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
365 366 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
366 367 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
367 368 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
368 369 1.626654 CGCACGCCCTGTAAACTGAG 61.627 60.000 0.00 0.00 0.00 3.35
369 370 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
370 371 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
371 372 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
372 373 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
373 374 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
374 375 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
375 376 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
376 377 3.436243 CCCTGTAAACTGAGAGAGAGGT 58.564 50.000 0.00 0.00 0.00 3.85
377 378 4.601084 CCCTGTAAACTGAGAGAGAGGTA 58.399 47.826 0.00 0.00 0.00 3.08
378 379 4.642885 CCCTGTAAACTGAGAGAGAGGTAG 59.357 50.000 0.00 0.00 0.00 3.18
379 380 5.258051 CCTGTAAACTGAGAGAGAGGTAGT 58.742 45.833 0.00 0.00 0.00 2.73
380 381 6.416415 CCTGTAAACTGAGAGAGAGGTAGTA 58.584 44.000 0.00 0.00 0.00 1.82
381 382 6.885376 CCTGTAAACTGAGAGAGAGGTAGTAA 59.115 42.308 0.00 0.00 0.00 2.24
382 383 7.148205 CCTGTAAACTGAGAGAGAGGTAGTAAC 60.148 44.444 0.00 0.00 0.00 2.50
383 384 7.229308 TGTAAACTGAGAGAGAGGTAGTAACA 58.771 38.462 0.00 0.00 0.00 2.41
384 385 7.889073 TGTAAACTGAGAGAGAGGTAGTAACAT 59.111 37.037 0.00 0.00 0.00 2.71
385 386 9.393512 GTAAACTGAGAGAGAGGTAGTAACATA 57.606 37.037 0.00 0.00 0.00 2.29
386 387 8.514330 AAACTGAGAGAGAGGTAGTAACATAG 57.486 38.462 0.00 0.00 0.00 2.23
387 388 7.202972 ACTGAGAGAGAGGTAGTAACATAGT 57.797 40.000 0.00 0.00 0.00 2.12
388 389 7.635648 ACTGAGAGAGAGGTAGTAACATAGTT 58.364 38.462 0.00 0.00 0.00 2.24
389 390 8.110908 ACTGAGAGAGAGGTAGTAACATAGTTT 58.889 37.037 0.00 0.00 0.00 2.66
390 391 9.616156 CTGAGAGAGAGGTAGTAACATAGTTTA 57.384 37.037 0.00 0.00 0.00 2.01
391 392 9.970553 TGAGAGAGAGGTAGTAACATAGTTTAA 57.029 33.333 0.00 0.00 0.00 1.52
411 412 9.227777 AGTTTAAGAAAGTGTGTAAGTTGTTCT 57.772 29.630 0.00 0.00 0.00 3.01
412 413 9.836076 GTTTAAGAAAGTGTGTAAGTTGTTCTT 57.164 29.630 0.00 0.00 39.89 2.52
417 418 9.391006 AGAAAGTGTGTAAGTTGTTCTTATTCA 57.609 29.630 0.00 0.00 40.23 2.57
420 421 9.950680 AAGTGTGTAAGTTGTTCTTATTCATTG 57.049 29.630 0.00 0.00 40.23 2.82
421 422 9.120538 AGTGTGTAAGTTGTTCTTATTCATTGT 57.879 29.630 0.00 0.00 40.23 2.71
422 423 9.169468 GTGTGTAAGTTGTTCTTATTCATTGTG 57.831 33.333 0.00 0.00 40.23 3.33
423 424 9.114952 TGTGTAAGTTGTTCTTATTCATTGTGA 57.885 29.630 0.00 0.00 40.23 3.58
424 425 9.382244 GTGTAAGTTGTTCTTATTCATTGTGAC 57.618 33.333 0.00 0.00 40.23 3.67
425 426 8.564574 TGTAAGTTGTTCTTATTCATTGTGACC 58.435 33.333 0.00 0.00 40.23 4.02
426 427 7.581213 AAGTTGTTCTTATTCATTGTGACCA 57.419 32.000 0.00 0.00 34.23 4.02
427 428 7.206981 AGTTGTTCTTATTCATTGTGACCAG 57.793 36.000 0.00 0.00 0.00 4.00
428 429 5.627499 TGTTCTTATTCATTGTGACCAGC 57.373 39.130 0.00 0.00 0.00 4.85
429 430 4.458989 TGTTCTTATTCATTGTGACCAGCC 59.541 41.667 0.00 0.00 0.00 4.85
713 746 4.710904 TCCCCAGCCCCCATTCCA 62.711 66.667 0.00 0.00 0.00 3.53
792 825 1.064825 CCGGTAAGCCCAATCCCTAT 58.935 55.000 0.00 0.00 0.00 2.57
793 826 2.262637 CCGGTAAGCCCAATCCCTATA 58.737 52.381 0.00 0.00 0.00 1.31
794 827 2.027469 CCGGTAAGCCCAATCCCTATAC 60.027 54.545 0.00 0.00 0.00 1.47
795 828 2.635915 CGGTAAGCCCAATCCCTATACA 59.364 50.000 0.00 0.00 0.00 2.29
841 878 4.467084 TCTCGCCCGTTCCATGGC 62.467 66.667 6.96 0.00 44.41 4.40
863 900 2.614057 CAATCGGATCTTCCTTTTCCCG 59.386 50.000 0.00 0.00 38.41 5.14
910 947 2.614779 GTGTCCGCTAGGTTACTTTCC 58.385 52.381 0.00 0.00 39.05 3.13
920 957 2.740447 AGGTTACTTTCCGTGCGAATTC 59.260 45.455 0.00 0.00 0.00 2.17
932 969 1.019278 GCGAATTCCTCAGCGGTTGA 61.019 55.000 0.00 0.00 0.00 3.18
936 973 0.749454 ATTCCTCAGCGGTTGATGCC 60.749 55.000 0.00 0.00 34.68 4.40
1116 1162 2.809601 CGTTCCGTCGCTCCCAAG 60.810 66.667 0.00 0.00 0.00 3.61
1117 1163 2.654877 GTTCCGTCGCTCCCAAGA 59.345 61.111 0.00 0.00 0.00 3.02
1169 1215 2.284625 AGATGACCCGGCCACAGA 60.285 61.111 2.24 0.00 0.00 3.41
1170 1216 1.690633 AGATGACCCGGCCACAGAT 60.691 57.895 2.24 0.00 0.00 2.90
1173 1219 2.125106 GACCCGGCCACAGATGTC 60.125 66.667 2.24 0.00 0.00 3.06
1202 1248 2.222886 CGGTATCGACTCCTCAGATGT 58.777 52.381 0.00 0.00 39.00 3.06
1224 1270 2.753043 GCCCTGGCTGTGGATGTG 60.753 66.667 0.00 0.00 38.26 3.21
1231 1277 3.027170 GCTGTGGATGTGAACGGCG 62.027 63.158 4.80 4.80 38.79 6.46
1327 1373 4.697756 TTCTCGCCCCTTGCACCG 62.698 66.667 0.00 0.00 41.33 4.94
1383 1429 3.582164 CTCCTCCTCCTATAAACTGCCT 58.418 50.000 0.00 0.00 0.00 4.75
1508 1566 5.073428 GGAAGTGAATTCTCCCTTTTCAGT 58.927 41.667 7.05 0.00 38.07 3.41
1528 1586 2.121291 TCATGCTAATGGCGGTCAAA 57.879 45.000 0.00 0.00 45.43 2.69
1530 1588 1.102978 ATGCTAATGGCGGTCAAACC 58.897 50.000 0.00 0.00 45.43 3.27
1731 1789 3.134127 GCGCTGGCAGGGTAAAGG 61.134 66.667 29.06 0.00 39.62 3.11
1743 1801 1.211949 GGGTAAAGGGCAGTGCTATGA 59.788 52.381 16.11 0.00 0.00 2.15
1857 1915 4.665833 TGGACGTGAATCGGAAATATCT 57.334 40.909 0.00 0.00 44.69 1.98
1920 1981 3.879932 AGAGTTTTGTTTGCTCGTAGC 57.120 42.857 0.58 0.58 42.82 3.58
1937 2132 0.676782 AGCAATTTCGCCGGCTTACT 60.677 50.000 26.68 9.07 31.34 2.24
2080 2275 1.798223 CGCCGTTTTCTTGTGATCTCA 59.202 47.619 0.00 0.00 0.00 3.27
2116 2311 5.550290 CTGAAAATGTTGGGCCTACAATTT 58.450 37.500 26.74 26.74 32.79 1.82
2360 2669 4.943705 CCTCTAGCTCTGCACCAAAATTAA 59.056 41.667 0.00 0.00 0.00 1.40
2403 2712 7.270779 GGTAGGGTACATCCTAGTTTAAACAG 58.729 42.308 20.06 14.01 39.82 3.16
2430 2739 9.932207 TCAAGAAGCAATTCATTTGACATAAAT 57.068 25.926 0.00 0.00 37.53 1.40
2490 2799 3.132467 AGCTAACCCCGTCTTGAGTAATC 59.868 47.826 0.00 0.00 0.00 1.75
2544 2857 3.503748 AGCTCAACAATAACTGAAGGCAC 59.496 43.478 0.00 0.00 0.00 5.01
2671 2984 4.275936 GCAATACACCCAGGTAGCTATTTG 59.724 45.833 0.00 0.00 0.00 2.32
2812 3125 7.272037 TGTGTCCTCAGTTTTCCTTTTAATC 57.728 36.000 0.00 0.00 0.00 1.75
2834 3147 3.622455 CGCCCCTTTCTAGTTTCCAAGAT 60.622 47.826 0.00 0.00 0.00 2.40
3006 3319 3.518992 CTCCAAAAACAGGGGAGGTAA 57.481 47.619 0.00 0.00 43.59 2.85
3075 3388 4.560513 GCAAAAGCCCAAACTATACAGCAA 60.561 41.667 0.00 0.00 0.00 3.91
3142 3455 1.966451 CAACGGAGACTGGGTTGGC 60.966 63.158 7.14 0.00 37.86 4.52
3336 3649 1.051008 TCAGTGCCAGACTCATGTGT 58.949 50.000 0.00 0.00 29.75 3.72
3375 3688 5.065988 GCAGTATGGTATTTTGATCACCGTT 59.934 40.000 0.00 0.00 35.86 4.44
3384 3697 5.697473 TTTTGATCACCGTTGAAAGCATA 57.303 34.783 0.00 0.00 34.61 3.14
3385 3698 5.697473 TTTGATCACCGTTGAAAGCATAA 57.303 34.783 0.00 0.00 34.61 1.90
3391 3704 3.372206 CACCGTTGAAAGCATAAGGAGAG 59.628 47.826 0.00 0.00 0.00 3.20
3395 3708 5.355596 CGTTGAAAGCATAAGGAGAGAGAT 58.644 41.667 0.00 0.00 0.00 2.75
3418 3731 3.523157 TCCATTCTCTCCAAAGCACCATA 59.477 43.478 0.00 0.00 0.00 2.74
3433 3746 5.079643 AGCACCATACTTGAACAGGATTTT 58.920 37.500 0.00 0.00 0.00 1.82
3526 3839 5.789574 ACATGGGAATACCTAGTTTTCCA 57.210 39.130 15.73 8.26 42.58 3.53
3527 3840 6.341408 ACATGGGAATACCTAGTTTTCCAT 57.659 37.500 15.73 9.78 42.58 3.41
3635 3959 4.085357 ACATGTTCACCTTTCAGCTACA 57.915 40.909 0.00 0.00 0.00 2.74
3649 3973 5.939764 TCAGCTACATTATTGACTGGAGT 57.060 39.130 0.00 0.00 0.00 3.85
3692 4016 4.762251 AGGCAGTTCCTTTGAGTAAACATC 59.238 41.667 0.00 0.00 44.75 3.06
3707 4031 9.899226 TGAGTAAACATCGATTCACAGATATAG 57.101 33.333 0.00 0.00 0.00 1.31
3768 4092 6.900568 ATAATTCGAAGCACTCTTTCTCTG 57.099 37.500 3.35 0.00 31.48 3.35
3813 4137 7.009174 CCAAATTTATGTGAAACTCGGCATTAC 59.991 37.037 0.00 0.00 38.04 1.89
3964 4288 8.610896 GGTTGAGATAAACATTCATTCAGAGAG 58.389 37.037 0.00 0.00 0.00 3.20
4048 4372 7.965107 GCACTTGTTTCTTCATAAGTCTAATGG 59.035 37.037 0.00 0.00 31.47 3.16
4247 4571 2.892425 GCCGAGTGGAGGAATGCG 60.892 66.667 0.00 0.00 37.49 4.73
4358 4682 3.854666 TCTCATCGAGCAGGAAAAAGAG 58.145 45.455 0.00 0.00 0.00 2.85
4429 4753 3.406764 AGAACTGCAGAGACCATGAAAC 58.593 45.455 23.35 0.00 0.00 2.78
4472 4796 2.918131 GCGCAAAAGACATGAAGACACC 60.918 50.000 0.30 0.00 0.00 4.16
4582 4907 3.701040 GTGCATCACTTATCCCATGGTTT 59.299 43.478 11.73 0.00 0.00 3.27
4881 5206 4.452114 TGTAGTCACATGCAAGCAGTTAAG 59.548 41.667 0.00 0.00 0.00 1.85
4935 5260 9.319143 GCAGTCTTTCATTAGTTATGACTGTAT 57.681 33.333 17.58 0.00 46.51 2.29
5110 5435 8.618702 ATTTTATCAAGATAGCTGACCTGATG 57.381 34.615 12.95 0.00 0.00 3.07
5723 6050 6.670027 AGGATAGACCAACTCTGTCAGTAAAT 59.330 38.462 0.00 0.00 38.58 1.40
5754 6081 2.373169 TCTGAGAGGGCAACTGATTGTT 59.627 45.455 0.00 0.00 38.17 2.83
5834 6161 3.340814 AAGAAAGACATCACAGCGGAT 57.659 42.857 0.00 0.00 0.00 4.18
5954 6283 2.034053 TCTTTGTTTCGTTGCATGGTCC 59.966 45.455 0.00 0.00 0.00 4.46
5955 6284 0.309302 TTGTTTCGTTGCATGGTCCG 59.691 50.000 0.00 0.00 0.00 4.79
6035 6364 7.665559 TGGTTCAGCTCAGTTGTATTTAAAGAT 59.334 33.333 0.00 0.00 0.00 2.40
6168 6497 7.270757 ACACTGCTGTGAAAATATTGTACAA 57.729 32.000 27.99 11.41 46.55 2.41
6194 6523 4.950050 ACTTGTCTACTTGTGAACTCTGG 58.050 43.478 0.00 0.00 0.00 3.86
6209 6538 2.607187 CTCTGGTCGAGTTAAATGCGT 58.393 47.619 0.00 0.00 34.95 5.24
6238 6567 5.049405 AGTCCATTAACTCAAACTCTTTGCG 60.049 40.000 0.00 0.00 40.43 4.85
6303 6632 8.504005 CCAACTCGTTTATTTGATCAGTTAAGT 58.496 33.333 0.00 0.00 0.00 2.24
6305 6634 9.490379 AACTCGTTTATTTGATCAGTTAAGTCT 57.510 29.630 0.00 0.00 0.00 3.24
6317 6646 6.349243 TCAGTTAAGTCTAAAACCGATCCA 57.651 37.500 0.00 0.00 0.00 3.41
6328 6657 3.618690 AACCGATCCAGGAGAGAAAAG 57.381 47.619 0.00 0.00 34.73 2.27
6330 6659 3.173965 ACCGATCCAGGAGAGAAAAGAA 58.826 45.455 0.00 0.00 34.73 2.52
6396 6725 5.660460 GCTTGGATTAATTTTACAGGGTGG 58.340 41.667 0.00 0.00 0.00 4.61
6397 6726 5.420739 GCTTGGATTAATTTTACAGGGTGGA 59.579 40.000 0.00 0.00 0.00 4.02
6398 6727 6.098266 GCTTGGATTAATTTTACAGGGTGGAT 59.902 38.462 0.00 0.00 0.00 3.41
6413 6742 3.250762 GGGTGGATTTTTGCAAAAGAAGC 59.749 43.478 22.78 17.61 0.00 3.86
6435 6764 3.376859 CCGTCACAATTTAGCTAATGGCA 59.623 43.478 7.08 0.00 44.79 4.92
6510 6847 6.360947 CAGAATATAAGTGACAACTCGATCCG 59.639 42.308 0.00 0.00 34.77 4.18
6523 6860 1.136110 TCGATCCGCTAGAATGCACAA 59.864 47.619 0.00 0.00 0.00 3.33
6530 6867 5.820131 TCCGCTAGAATGCACAATAATTTG 58.180 37.500 0.00 0.00 38.86 2.32
6531 6868 5.588246 TCCGCTAGAATGCACAATAATTTGA 59.412 36.000 0.00 0.00 36.64 2.69
6612 6949 9.723601 AAATAGCCAATTGTTGATGTTATTTGT 57.276 25.926 4.43 0.00 0.00 2.83
6616 6953 7.498570 AGCCAATTGTTGATGTTATTTGTGTTT 59.501 29.630 4.43 0.00 0.00 2.83
6689 7026 2.479566 AAGGAACGTGATGTGCTGAT 57.520 45.000 0.00 0.00 0.00 2.90
6691 7028 0.097674 GGAACGTGATGTGCTGATGC 59.902 55.000 0.00 0.00 40.20 3.91
6742 7079 2.504585 AGAGAAGAAGAGCCATGCATCA 59.495 45.455 0.00 0.00 0.00 3.07
6840 7178 5.616270 ACCACCATTGTTTATTTCCCAAAC 58.384 37.500 0.00 0.00 36.60 2.93
6841 7179 5.131142 ACCACCATTGTTTATTTCCCAAACA 59.869 36.000 0.00 0.00 42.53 2.83
6865 7203 5.725362 AGGAGAGGAGAAGAAACAAATACG 58.275 41.667 0.00 0.00 0.00 3.06
6879 7217 6.811253 AACAAATACGTACACATTGTGGAT 57.189 33.333 20.33 3.60 37.94 3.41
6897 7235 1.933853 GATGCTTGCGGTATCTCGTTT 59.066 47.619 1.55 0.00 34.81 3.60
6987 7419 0.027586 GTAATGATGGTTCGCCGTGC 59.972 55.000 0.00 0.00 41.18 5.34
7280 7754 1.530323 GTAGCCACATGGACGGTTTT 58.470 50.000 0.87 0.00 37.39 2.43
7353 7827 4.531854 TGGCCTAAATCGATCATTTTCCA 58.468 39.130 3.32 0.00 36.09 3.53
7452 7926 0.256464 ACCCACGAACCCTGAAACAA 59.744 50.000 0.00 0.00 0.00 2.83
7467 7941 4.728772 TGAAACAATGTCTTCCCTGTGAT 58.271 39.130 0.00 0.00 0.00 3.06
7647 8121 6.566197 ATTGCAGGTTCTAAAACTGAGAAG 57.434 37.500 8.86 0.00 33.64 2.85
7734 8208 2.029838 ATTTCTTCGGCAGCTACCAG 57.970 50.000 3.30 0.00 0.00 4.00
7979 8455 2.614481 GGGTATCAGCCGTTTGAGAACA 60.614 50.000 0.00 0.00 35.44 3.18
7990 8466 1.909700 TTGAGAACACCAAGCATCCC 58.090 50.000 0.00 0.00 0.00 3.85
8085 8561 2.618709 CAGTGGAAGCCGAGAAAAGTTT 59.381 45.455 0.00 0.00 0.00 2.66
8190 8666 4.104086 ACACCCAAGACAGAAGATATGGA 58.896 43.478 0.00 0.00 0.00 3.41
8196 8672 4.935352 AGACAGAAGATATGGACTCTGC 57.065 45.455 0.00 0.00 0.00 4.26
8301 8777 1.512926 GAGAACGCTGGCTCAAAGAA 58.487 50.000 0.00 0.00 0.00 2.52
8306 8782 0.952497 CGCTGGCTCAAAGAAGCAGA 60.952 55.000 0.00 0.00 44.35 4.26
8310 8786 3.636381 CTGGCTCAAAGAAGCAGAAAAC 58.364 45.455 0.00 0.00 44.35 2.43
8311 8787 3.023119 TGGCTCAAAGAAGCAGAAAACA 58.977 40.909 0.00 0.00 44.35 2.83
8335 8811 3.009033 TGGACATTCGGTCTCCTTCAAAT 59.991 43.478 0.00 0.00 46.16 2.32
8341 8817 5.477607 TTCGGTCTCCTTCAAATAAGTCA 57.522 39.130 0.00 0.00 0.00 3.41
8424 8900 1.457346 AAGGCGCAGAAATCTGGAAG 58.543 50.000 10.83 0.00 43.94 3.46
8435 8911 4.412858 AGAAATCTGGAAGCTCATCCTCAT 59.587 41.667 6.03 0.00 40.35 2.90
8512 8988 1.329906 GGAAACTCATCATCAGCTGCG 59.670 52.381 9.47 2.31 0.00 5.18
8583 9059 3.144506 CTGGAAACTCATTCACAGCTGT 58.855 45.455 15.25 15.25 39.98 4.40
8608 9084 4.218312 AGCCAAAAACAGGAAAGTCATCT 58.782 39.130 0.00 0.00 0.00 2.90
8640 9116 3.769201 GCAGGCAGCTGGAAACTT 58.231 55.556 17.12 0.00 41.15 2.66
8746 9222 1.076677 AGGAGGAGTCAAAGGGTACGA 59.923 52.381 0.00 0.00 0.00 3.43
8807 9283 9.967451 TCAAATTCAGGGTAGTGTAATTATGAA 57.033 29.630 0.00 0.00 0.00 2.57
8838 9314 8.214364 AGGTCTTGTTTATCAATCTATCCCTTC 58.786 37.037 0.00 0.00 35.35 3.46
9066 9545 6.245408 TGTATTCACCTAGCATTTGTTTCCT 58.755 36.000 0.00 0.00 0.00 3.36
9244 9723 4.021981 GCCCCATAATTCATTAGTTGAGGC 60.022 45.833 0.00 0.00 35.27 4.70
9299 9778 8.578448 TGATGATTGATAACACCAAAAGATCA 57.422 30.769 0.00 0.00 0.00 2.92
9361 9841 5.187576 CCAAAGAAGGCTTAATTCCCATTCA 59.812 40.000 0.00 0.00 32.98 2.57
9416 9896 2.028130 CAGAGGACAGCGAGGAGTAAT 58.972 52.381 0.00 0.00 0.00 1.89
9424 9904 3.452627 ACAGCGAGGAGTAATCTTGGATT 59.547 43.478 0.00 0.00 0.00 3.01
9425 9905 4.080863 ACAGCGAGGAGTAATCTTGGATTT 60.081 41.667 0.00 0.00 0.00 2.17
9511 9991 5.851720 TGGCAGAAAAAGTTGCATTGATAA 58.148 33.333 0.00 0.00 42.02 1.75
9529 10009 4.887071 TGATAATGGAATAAGCGCAACCTT 59.113 37.500 11.47 0.00 0.00 3.50
9538 10018 1.620822 AGCGCAACCTTTCCTTTCAT 58.379 45.000 11.47 0.00 0.00 2.57
9592 10198 4.878397 AGTTTGCAACCTGTGATATAGCTC 59.122 41.667 0.00 0.00 0.00 4.09
9603 10209 6.034161 TGTGATATAGCTCATGTCATGGAG 57.966 41.667 12.90 9.75 37.15 3.86
9638 10244 4.385825 AGCTTTATGACCGTTCAAACTCA 58.614 39.130 0.00 0.00 34.61 3.41
9739 10345 9.539825 ACTAAATAGAGTCATATTGAACTGCTG 57.460 33.333 0.00 0.00 0.00 4.41
9740 10346 9.755804 CTAAATAGAGTCATATTGAACTGCTGA 57.244 33.333 0.00 0.00 0.00 4.26
9742 10348 8.659925 AATAGAGTCATATTGAACTGCTGAAG 57.340 34.615 0.00 0.00 0.00 3.02
9743 10349 6.291648 AGAGTCATATTGAACTGCTGAAGA 57.708 37.500 0.00 0.00 0.00 2.87
9744 10350 6.887013 AGAGTCATATTGAACTGCTGAAGAT 58.113 36.000 0.00 0.00 0.00 2.40
9745 10351 7.337167 AGAGTCATATTGAACTGCTGAAGATT 58.663 34.615 0.00 0.00 0.00 2.40
9746 10352 7.828223 AGAGTCATATTGAACTGCTGAAGATTT 59.172 33.333 0.00 0.00 0.00 2.17
9747 10353 7.983307 AGTCATATTGAACTGCTGAAGATTTC 58.017 34.615 0.00 0.00 0.00 2.17
9748 10354 7.609146 AGTCATATTGAACTGCTGAAGATTTCA 59.391 33.333 0.00 0.00 38.17 2.69
9749 10355 8.239314 GTCATATTGAACTGCTGAAGATTTCAA 58.761 33.333 4.45 4.45 39.58 2.69
9750 10356 8.456471 TCATATTGAACTGCTGAAGATTTCAAG 58.544 33.333 7.32 0.00 39.58 3.02
9751 10357 6.889301 ATTGAACTGCTGAAGATTTCAAGA 57.111 33.333 7.32 0.00 39.58 3.02
9752 10358 5.679734 TGAACTGCTGAAGATTTCAAGAC 57.320 39.130 0.00 0.00 39.58 3.01
9753 10359 4.516698 TGAACTGCTGAAGATTTCAAGACC 59.483 41.667 0.00 0.00 39.58 3.85
9754 10360 4.090761 ACTGCTGAAGATTTCAAGACCA 57.909 40.909 0.00 0.00 39.58 4.02
9755 10361 4.070716 ACTGCTGAAGATTTCAAGACCAG 58.929 43.478 0.00 0.00 39.58 4.00
9756 10362 3.415212 TGCTGAAGATTTCAAGACCAGG 58.585 45.455 0.00 0.00 39.58 4.45
9757 10363 3.181440 TGCTGAAGATTTCAAGACCAGGT 60.181 43.478 0.00 0.00 39.58 4.00
9758 10364 4.041567 TGCTGAAGATTTCAAGACCAGGTA 59.958 41.667 0.00 0.00 39.58 3.08
9759 10365 4.633565 GCTGAAGATTTCAAGACCAGGTAG 59.366 45.833 0.00 0.00 39.58 3.18
9760 10366 5.165961 TGAAGATTTCAAGACCAGGTAGG 57.834 43.478 0.00 0.00 39.21 3.18
9761 10367 4.597507 TGAAGATTTCAAGACCAGGTAGGT 59.402 41.667 0.00 0.00 45.58 3.08
9762 10368 5.073144 TGAAGATTTCAAGACCAGGTAGGTT 59.927 40.000 0.00 0.00 43.88 3.50
9763 10369 6.271391 TGAAGATTTCAAGACCAGGTAGGTTA 59.729 38.462 0.00 0.00 43.88 2.85
9764 10370 7.037586 TGAAGATTTCAAGACCAGGTAGGTTAT 60.038 37.037 0.00 0.00 43.88 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
1 2 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
4 5 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
5 6 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
6 7 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
7 8 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
8 9 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
10 11 6.071952 ACCACATAAGCAAAGTTGTATTGGAG 60.072 38.462 0.00 0.00 0.00 3.86
12 13 6.024552 ACCACATAAGCAAAGTTGTATTGG 57.975 37.500 0.00 0.00 0.00 3.16
13 14 7.589395 TGTACCACATAAGCAAAGTTGTATTG 58.411 34.615 0.00 0.00 0.00 1.90
14 15 7.753309 TGTACCACATAAGCAAAGTTGTATT 57.247 32.000 0.00 0.00 0.00 1.89
15 16 7.938140 ATGTACCACATAAGCAAAGTTGTAT 57.062 32.000 0.00 0.00 36.99 2.29
16 17 9.456147 AATATGTACCACATAAGCAAAGTTGTA 57.544 29.630 3.31 0.00 43.50 2.41
17 18 7.938140 ATATGTACCACATAAGCAAAGTTGT 57.062 32.000 3.31 0.00 43.50 3.32
31 32 9.482627 CCTCTCTCTTCATTAAATATGTACCAC 57.517 37.037 0.00 0.00 0.00 4.16
32 33 9.213777 ACCTCTCTCTTCATTAAATATGTACCA 57.786 33.333 0.00 0.00 0.00 3.25
33 34 9.482627 CACCTCTCTCTTCATTAAATATGTACC 57.517 37.037 0.00 0.00 0.00 3.34
34 35 8.983724 GCACCTCTCTCTTCATTAAATATGTAC 58.016 37.037 0.00 0.00 0.00 2.90
35 36 8.928448 AGCACCTCTCTCTTCATTAAATATGTA 58.072 33.333 0.00 0.00 0.00 2.29
36 37 7.800092 AGCACCTCTCTCTTCATTAAATATGT 58.200 34.615 0.00 0.00 0.00 2.29
37 38 8.557864 CAAGCACCTCTCTCTTCATTAAATATG 58.442 37.037 0.00 0.00 0.00 1.78
38 39 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
39 40 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
40 41 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
41 42 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
42 43 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
43 44 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
44 45 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
45 46 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
46 47 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
47 48 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
48 49 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
49 50 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
50 51 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
51 52 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
52 53 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
53 54 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
54 55 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
55 56 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
56 57 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
57 58 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
58 59 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
67 68 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
69 70 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
70 71 5.258456 TGATGTTCCGGTAACTTAGCTAG 57.742 43.478 0.00 0.00 38.99 3.42
71 72 5.864418 ATGATGTTCCGGTAACTTAGCTA 57.136 39.130 0.00 0.00 38.99 3.32
72 73 4.755266 ATGATGTTCCGGTAACTTAGCT 57.245 40.909 0.00 0.00 38.99 3.32
73 74 5.233689 GTGTATGATGTTCCGGTAACTTAGC 59.766 44.000 0.00 0.00 38.99 3.09
74 75 6.570692 AGTGTATGATGTTCCGGTAACTTAG 58.429 40.000 0.00 0.00 38.99 2.18
75 76 6.406177 GGAGTGTATGATGTTCCGGTAACTTA 60.406 42.308 0.00 0.00 38.99 2.24
76 77 5.416271 AGTGTATGATGTTCCGGTAACTT 57.584 39.130 0.00 3.15 38.99 2.66
77 78 4.142004 GGAGTGTATGATGTTCCGGTAACT 60.142 45.833 0.00 0.00 38.99 2.24
78 79 4.117685 GGAGTGTATGATGTTCCGGTAAC 58.882 47.826 0.00 5.56 38.67 2.50
79 80 3.770388 TGGAGTGTATGATGTTCCGGTAA 59.230 43.478 0.00 0.00 0.00 2.85
80 81 3.367321 TGGAGTGTATGATGTTCCGGTA 58.633 45.455 0.00 0.00 0.00 4.02
81 82 2.184533 TGGAGTGTATGATGTTCCGGT 58.815 47.619 0.00 0.00 0.00 5.28
82 83 2.979814 TGGAGTGTATGATGTTCCGG 57.020 50.000 0.00 0.00 0.00 5.14
83 84 5.621197 TTTTTGGAGTGTATGATGTTCCG 57.379 39.130 0.00 0.00 0.00 4.30
118 119 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
119 120 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
120 121 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
121 122 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
122 123 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
123 124 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
124 125 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
125 126 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
126 127 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
127 128 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
128 129 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
129 130 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
130 131 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
131 132 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
132 133 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
133 134 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
134 135 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
135 136 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
136 137 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
137 138 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
138 139 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
139 140 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
140 141 7.946207 AGTAGGAACATCTATGTAGTGTCATG 58.054 38.462 0.00 0.00 40.80 3.07
141 142 9.069082 GTAGTAGGAACATCTATGTAGTGTCAT 57.931 37.037 0.00 0.00 40.80 3.06
142 143 7.501559 GGTAGTAGGAACATCTATGTAGTGTCA 59.498 40.741 0.00 0.00 40.80 3.58
143 144 7.720515 AGGTAGTAGGAACATCTATGTAGTGTC 59.279 40.741 0.00 0.00 40.80 3.67
144 145 7.584532 AGGTAGTAGGAACATCTATGTAGTGT 58.415 38.462 0.00 0.00 40.80 3.55
145 146 7.175293 GGAGGTAGTAGGAACATCTATGTAGTG 59.825 44.444 0.00 0.00 40.80 2.74
146 147 7.232910 GGAGGTAGTAGGAACATCTATGTAGT 58.767 42.308 0.00 0.00 40.80 2.73
147 148 6.372103 CGGAGGTAGTAGGAACATCTATGTAG 59.628 46.154 0.00 0.00 40.80 2.74
148 149 6.183361 ACGGAGGTAGTAGGAACATCTATGTA 60.183 42.308 0.00 0.00 40.80 2.29
149 150 5.071370 CGGAGGTAGTAGGAACATCTATGT 58.929 45.833 0.00 0.00 44.20 2.29
150 151 5.071370 ACGGAGGTAGTAGGAACATCTATG 58.929 45.833 0.00 0.00 0.00 2.23
151 152 5.321934 ACGGAGGTAGTAGGAACATCTAT 57.678 43.478 0.00 0.00 0.00 1.98
152 153 4.785346 ACGGAGGTAGTAGGAACATCTA 57.215 45.455 0.00 0.00 0.00 1.98
153 154 3.666345 ACGGAGGTAGTAGGAACATCT 57.334 47.619 0.00 0.00 0.00 2.90
154 155 4.159135 TGAAACGGAGGTAGTAGGAACATC 59.841 45.833 0.00 0.00 0.00 3.06
155 156 4.091549 TGAAACGGAGGTAGTAGGAACAT 58.908 43.478 0.00 0.00 0.00 2.71
156 157 3.499338 TGAAACGGAGGTAGTAGGAACA 58.501 45.455 0.00 0.00 0.00 3.18
157 158 3.509184 ACTGAAACGGAGGTAGTAGGAAC 59.491 47.826 0.00 0.00 0.00 3.62
158 159 3.771216 ACTGAAACGGAGGTAGTAGGAA 58.229 45.455 0.00 0.00 0.00 3.36
159 160 3.446442 ACTGAAACGGAGGTAGTAGGA 57.554 47.619 0.00 0.00 0.00 2.94
160 161 4.532314 AAACTGAAACGGAGGTAGTAGG 57.468 45.455 0.00 0.00 0.00 3.18
161 162 6.017400 TGTAAACTGAAACGGAGGTAGTAG 57.983 41.667 0.00 0.00 0.00 2.57
162 163 6.040842 ACTTGTAAACTGAAACGGAGGTAGTA 59.959 38.462 0.00 0.00 0.00 1.82
163 164 4.942761 TGTAAACTGAAACGGAGGTAGT 57.057 40.909 0.00 0.00 0.00 2.73
164 165 5.295152 ACTTGTAAACTGAAACGGAGGTAG 58.705 41.667 0.00 0.00 0.00 3.18
165 166 5.280654 ACTTGTAAACTGAAACGGAGGTA 57.719 39.130 0.00 0.00 0.00 3.08
166 167 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
167 168 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
168 169 4.211374 CAGGACTTGTAAACTGAAACGGAG 59.789 45.833 0.00 0.00 32.86 4.63
169 170 4.124238 CAGGACTTGTAAACTGAAACGGA 58.876 43.478 0.00 0.00 32.86 4.69
170 171 3.303791 GCAGGACTTGTAAACTGAAACGG 60.304 47.826 0.00 0.00 32.86 4.44
171 172 3.603857 CGCAGGACTTGTAAACTGAAACG 60.604 47.826 0.00 0.00 32.86 3.60
172 173 3.848554 GCGCAGGACTTGTAAACTGAAAC 60.849 47.826 0.30 0.00 32.86 2.78
173 174 2.289547 GCGCAGGACTTGTAAACTGAAA 59.710 45.455 0.30 0.00 32.86 2.69
174 175 1.871039 GCGCAGGACTTGTAAACTGAA 59.129 47.619 0.30 0.00 32.86 3.02
175 176 1.508632 GCGCAGGACTTGTAAACTGA 58.491 50.000 0.30 0.00 32.86 3.41
176 177 0.163788 CGCGCAGGACTTGTAAACTG 59.836 55.000 8.75 0.00 0.00 3.16
177 178 0.249741 ACGCGCAGGACTTGTAAACT 60.250 50.000 5.73 0.00 0.00 2.66
178 179 1.421382 TACGCGCAGGACTTGTAAAC 58.579 50.000 5.73 0.00 0.00 2.01
179 180 2.373540 ATACGCGCAGGACTTGTAAA 57.626 45.000 5.73 0.00 0.00 2.01
180 181 2.480073 GGTATACGCGCAGGACTTGTAA 60.480 50.000 5.73 0.00 0.00 2.41
181 182 1.066002 GGTATACGCGCAGGACTTGTA 59.934 52.381 5.73 0.00 0.00 2.41
182 183 0.179119 GGTATACGCGCAGGACTTGT 60.179 55.000 5.73 0.00 0.00 3.16
183 184 0.102481 AGGTATACGCGCAGGACTTG 59.898 55.000 5.73 0.00 0.00 3.16
184 185 1.607628 CTAGGTATACGCGCAGGACTT 59.392 52.381 5.73 0.00 0.00 3.01
185 186 1.236628 CTAGGTATACGCGCAGGACT 58.763 55.000 5.73 1.68 0.00 3.85
186 187 0.240411 CCTAGGTATACGCGCAGGAC 59.760 60.000 5.73 0.00 0.00 3.85
187 188 0.179009 ACCTAGGTATACGCGCAGGA 60.179 55.000 14.41 0.00 0.00 3.86
188 189 0.672342 AACCTAGGTATACGCGCAGG 59.328 55.000 16.67 6.39 0.00 4.85
189 190 1.767289 CAACCTAGGTATACGCGCAG 58.233 55.000 16.67 2.42 0.00 5.18
190 191 0.249155 GCAACCTAGGTATACGCGCA 60.249 55.000 16.67 0.00 0.00 6.09
191 192 0.942884 GGCAACCTAGGTATACGCGC 60.943 60.000 16.67 10.85 0.00 6.86
192 193 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
193 194 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
194 195 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
195 196 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
196 197 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
197 198 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
198 199 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
199 200 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
200 201 4.709397 TGGTGATAAAATTGGCAACCTAGG 59.291 41.667 7.41 7.41 0.00 3.02
201 202 5.913137 TGGTGATAAAATTGGCAACCTAG 57.087 39.130 0.00 0.00 0.00 3.02
202 203 7.962995 TTATGGTGATAAAATTGGCAACCTA 57.037 32.000 0.00 0.00 0.00 3.08
203 204 6.865834 TTATGGTGATAAAATTGGCAACCT 57.134 33.333 0.00 0.00 0.00 3.50
249 250 9.211485 CGGAGTTTCTACTTTCAAAAGGTATAA 57.789 33.333 7.37 0.00 40.31 0.98
250 251 8.587608 TCGGAGTTTCTACTTTCAAAAGGTATA 58.412 33.333 7.37 0.00 40.31 1.47
251 252 7.447594 TCGGAGTTTCTACTTTCAAAAGGTAT 58.552 34.615 7.37 0.00 40.31 2.73
252 253 6.819284 TCGGAGTTTCTACTTTCAAAAGGTA 58.181 36.000 7.37 0.00 40.31 3.08
253 254 5.677567 TCGGAGTTTCTACTTTCAAAAGGT 58.322 37.500 7.37 0.00 40.31 3.50
254 255 6.260271 ACTTCGGAGTTTCTACTTTCAAAAGG 59.740 38.462 7.37 0.00 34.81 3.11
255 256 7.247929 ACTTCGGAGTTTCTACTTTCAAAAG 57.752 36.000 0.00 0.97 35.92 2.27
256 257 7.619964 AACTTCGGAGTTTCTACTTTCAAAA 57.380 32.000 2.29 0.00 43.48 2.44
270 271 9.457436 AAAATATACCAACATAAACTTCGGAGT 57.543 29.630 0.00 0.00 37.87 3.85
317 318 9.116067 CCCTAAATCGTTAATTTGACCAATCTA 57.884 33.333 0.00 0.00 38.08 1.98
318 319 7.832187 TCCCTAAATCGTTAATTTGACCAATCT 59.168 33.333 0.00 0.00 38.08 2.40
319 320 7.992008 TCCCTAAATCGTTAATTTGACCAATC 58.008 34.615 0.00 0.00 38.08 2.67
320 321 7.948034 TCCCTAAATCGTTAATTTGACCAAT 57.052 32.000 0.00 0.00 38.08 3.16
321 322 7.948034 ATCCCTAAATCGTTAATTTGACCAA 57.052 32.000 0.00 0.00 38.08 3.67
322 323 7.225145 CGTATCCCTAAATCGTTAATTTGACCA 59.775 37.037 0.00 0.00 38.08 4.02
323 324 7.570161 CGTATCCCTAAATCGTTAATTTGACC 58.430 38.462 0.00 0.00 38.08 4.02
324 325 7.067728 GCGTATCCCTAAATCGTTAATTTGAC 58.932 38.462 0.00 0.00 38.08 3.18
325 326 6.074195 CGCGTATCCCTAAATCGTTAATTTGA 60.074 38.462 0.00 0.00 38.08 2.69
326 327 6.068931 CGCGTATCCCTAAATCGTTAATTTG 58.931 40.000 0.00 0.00 38.08 2.32
327 328 5.333568 GCGCGTATCCCTAAATCGTTAATTT 60.334 40.000 8.43 0.00 40.67 1.82
328 329 4.151157 GCGCGTATCCCTAAATCGTTAATT 59.849 41.667 8.43 0.00 0.00 1.40
329 330 3.676646 GCGCGTATCCCTAAATCGTTAAT 59.323 43.478 8.43 0.00 0.00 1.40
330 331 3.052036 GCGCGTATCCCTAAATCGTTAA 58.948 45.455 8.43 0.00 0.00 2.01
331 332 2.034432 TGCGCGTATCCCTAAATCGTTA 59.966 45.455 8.43 0.00 0.00 3.18
332 333 1.202440 TGCGCGTATCCCTAAATCGTT 60.202 47.619 8.43 0.00 0.00 3.85
333 334 0.386476 TGCGCGTATCCCTAAATCGT 59.614 50.000 8.43 0.00 0.00 3.73
334 335 0.782384 GTGCGCGTATCCCTAAATCG 59.218 55.000 8.43 0.00 0.00 3.34
335 336 0.782384 CGTGCGCGTATCCCTAAATC 59.218 55.000 12.43 0.00 0.00 2.17
336 337 1.219522 GCGTGCGCGTATCCCTAAAT 61.220 55.000 22.18 0.00 40.81 1.40
337 338 1.879430 GCGTGCGCGTATCCCTAAA 60.879 57.895 22.18 0.00 40.81 1.85
338 339 2.278989 GCGTGCGCGTATCCCTAA 60.279 61.111 22.18 0.00 40.81 2.69
339 340 4.274700 GGCGTGCGCGTATCCCTA 62.275 66.667 22.18 0.00 43.06 3.53
343 344 3.761445 TACAGGGCGTGCGCGTATC 62.761 63.158 22.18 11.01 43.06 2.24
344 345 2.839043 TTTACAGGGCGTGCGCGTAT 62.839 55.000 22.18 4.49 43.06 3.06
345 346 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
346 347 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
347 348 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
348 349 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
349 350 1.626654 CTCAGTTTACAGGGCGTGCG 61.627 60.000 7.17 0.00 0.00 5.34
350 351 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
351 352 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
352 353 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
353 354 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
354 355 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
355 356 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
356 357 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
357 358 7.390996 TGTTACTACCTCTCTCTCAGTTTACAG 59.609 40.741 0.00 0.00 0.00 2.74
358 359 7.229308 TGTTACTACCTCTCTCTCAGTTTACA 58.771 38.462 0.00 0.00 0.00 2.41
359 360 7.684937 TGTTACTACCTCTCTCTCAGTTTAC 57.315 40.000 0.00 0.00 0.00 2.01
360 361 9.616156 CTATGTTACTACCTCTCTCTCAGTTTA 57.384 37.037 0.00 0.00 0.00 2.01
361 362 8.110908 ACTATGTTACTACCTCTCTCTCAGTTT 58.889 37.037 0.00 0.00 0.00 2.66
362 363 7.635648 ACTATGTTACTACCTCTCTCTCAGTT 58.364 38.462 0.00 0.00 0.00 3.16
363 364 7.202972 ACTATGTTACTACCTCTCTCTCAGT 57.797 40.000 0.00 0.00 0.00 3.41
364 365 8.514330 AAACTATGTTACTACCTCTCTCTCAG 57.486 38.462 0.00 0.00 0.00 3.35
365 366 9.970553 TTAAACTATGTTACTACCTCTCTCTCA 57.029 33.333 0.00 0.00 0.00 3.27
385 386 9.227777 AGAACAACTTACACACTTTCTTAAACT 57.772 29.630 0.00 0.00 0.00 2.66
386 387 9.836076 AAGAACAACTTACACACTTTCTTAAAC 57.164 29.630 0.00 0.00 37.03 2.01
391 392 9.391006 TGAATAAGAACAACTTACACACTTTCT 57.609 29.630 0.00 0.00 42.79 2.52
394 395 9.950680 CAATGAATAAGAACAACTTACACACTT 57.049 29.630 0.00 0.00 42.79 3.16
395 396 9.120538 ACAATGAATAAGAACAACTTACACACT 57.879 29.630 0.00 0.00 42.79 3.55
396 397 9.169468 CACAATGAATAAGAACAACTTACACAC 57.831 33.333 0.00 0.00 42.79 3.82
397 398 9.114952 TCACAATGAATAAGAACAACTTACACA 57.885 29.630 0.00 0.00 42.79 3.72
398 399 9.382244 GTCACAATGAATAAGAACAACTTACAC 57.618 33.333 0.00 0.00 42.79 2.90
399 400 8.564574 GGTCACAATGAATAAGAACAACTTACA 58.435 33.333 0.00 0.00 42.79 2.41
400 401 8.564574 TGGTCACAATGAATAAGAACAACTTAC 58.435 33.333 0.00 0.00 42.79 2.34
401 402 8.684386 TGGTCACAATGAATAAGAACAACTTA 57.316 30.769 0.00 0.00 43.89 2.24
402 403 7.581213 TGGTCACAATGAATAAGAACAACTT 57.419 32.000 0.00 0.00 42.04 2.66
403 404 6.294176 GCTGGTCACAATGAATAAGAACAACT 60.294 38.462 0.00 0.00 0.00 3.16
404 405 5.858581 GCTGGTCACAATGAATAAGAACAAC 59.141 40.000 0.00 0.00 0.00 3.32
405 406 5.048083 GGCTGGTCACAATGAATAAGAACAA 60.048 40.000 0.00 0.00 0.00 2.83
406 407 4.458989 GGCTGGTCACAATGAATAAGAACA 59.541 41.667 0.00 0.00 0.00 3.18
407 408 4.702131 AGGCTGGTCACAATGAATAAGAAC 59.298 41.667 0.00 0.00 0.00 3.01
408 409 4.922206 AGGCTGGTCACAATGAATAAGAA 58.078 39.130 0.00 0.00 0.00 2.52
409 410 4.574674 AGGCTGGTCACAATGAATAAGA 57.425 40.909 0.00 0.00 0.00 2.10
410 411 6.732154 CATTAGGCTGGTCACAATGAATAAG 58.268 40.000 0.00 0.00 0.00 1.73
411 412 5.067674 GCATTAGGCTGGTCACAATGAATAA 59.932 40.000 9.10 0.00 40.25 1.40
412 413 4.580167 GCATTAGGCTGGTCACAATGAATA 59.420 41.667 9.10 0.00 40.25 1.75
413 414 3.382546 GCATTAGGCTGGTCACAATGAAT 59.617 43.478 9.10 0.00 40.25 2.57
414 415 2.754552 GCATTAGGCTGGTCACAATGAA 59.245 45.455 9.10 0.00 40.25 2.57
415 416 2.290832 TGCATTAGGCTGGTCACAATGA 60.291 45.455 9.10 0.00 45.15 2.57
416 417 2.093890 TGCATTAGGCTGGTCACAATG 58.906 47.619 0.00 0.00 45.15 2.82
417 418 2.372264 CTGCATTAGGCTGGTCACAAT 58.628 47.619 0.00 0.00 45.15 2.71
418 419 1.825090 CTGCATTAGGCTGGTCACAA 58.175 50.000 0.00 0.00 45.15 3.33
419 420 3.556817 CTGCATTAGGCTGGTCACA 57.443 52.632 0.00 0.00 45.15 3.58
425 426 1.099879 GCCAGTCCTGCATTAGGCTG 61.100 60.000 0.00 6.24 46.87 4.85
426 427 1.225704 GCCAGTCCTGCATTAGGCT 59.774 57.895 8.10 0.00 46.87 4.58
427 428 2.182842 CGCCAGTCCTGCATTAGGC 61.183 63.158 0.00 0.00 46.87 3.93
429 430 1.148157 CGTCGCCAGTCCTGCATTAG 61.148 60.000 0.00 0.00 0.00 1.73
546 579 3.312890 CTCTCTCTCTCTCTCTCCCTCT 58.687 54.545 0.00 0.00 0.00 3.69
547 580 2.224402 GCTCTCTCTCTCTCTCTCCCTC 60.224 59.091 0.00 0.00 0.00 4.30
548 581 1.771255 GCTCTCTCTCTCTCTCTCCCT 59.229 57.143 0.00 0.00 0.00 4.20
549 582 1.771255 AGCTCTCTCTCTCTCTCTCCC 59.229 57.143 0.00 0.00 0.00 4.30
550 583 2.546795 CGAGCTCTCTCTCTCTCTCTCC 60.547 59.091 12.85 0.00 37.19 3.71
713 746 2.444895 GGGAGGATCAGGGCGACT 60.445 66.667 0.00 0.00 36.25 4.18
809 842 4.436998 AGAGAAACGCGAGGCCGG 62.437 66.667 15.93 0.00 36.06 6.13
841 878 2.952310 GGGAAAAGGAAGATCCGATTGG 59.048 50.000 0.00 0.00 42.75 3.16
910 947 2.697425 CGCTGAGGAATTCGCACG 59.303 61.111 0.00 4.08 0.00 5.34
932 969 0.816825 CCTGCAGCAGATTACGGCAT 60.817 55.000 24.90 0.00 39.53 4.40
936 973 1.009829 GAACCCTGCAGCAGATTACG 58.990 55.000 24.90 6.30 32.44 3.18
1112 1158 3.952628 GAACCGCCTCCCGTCTTGG 62.953 68.421 0.00 0.00 34.38 3.61
1113 1159 2.434359 GAACCGCCTCCCGTCTTG 60.434 66.667 0.00 0.00 34.38 3.02
1114 1160 2.603776 AGAACCGCCTCCCGTCTT 60.604 61.111 0.00 0.00 34.38 3.01
1115 1161 3.382832 CAGAACCGCCTCCCGTCT 61.383 66.667 0.00 0.00 34.38 4.18
1116 1162 3.692406 ACAGAACCGCCTCCCGTC 61.692 66.667 0.00 0.00 34.38 4.79
1117 1163 4.003788 CACAGAACCGCCTCCCGT 62.004 66.667 0.00 0.00 34.38 5.28
1137 1183 1.554617 TCATCTGAGCGGAATTCACCA 59.445 47.619 7.93 0.00 0.00 4.17
1169 1215 1.676529 CGATACCGTCCTCACAGACAT 59.323 52.381 0.00 0.00 36.52 3.06
1170 1216 1.092348 CGATACCGTCCTCACAGACA 58.908 55.000 0.00 0.00 36.52 3.41
1173 1219 1.331138 GAGTCGATACCGTCCTCACAG 59.669 57.143 0.00 0.00 36.04 3.66
1238 1284 2.517166 GATTCTCCTTGGCCCCGC 60.517 66.667 0.00 0.00 0.00 6.13
1244 1290 1.684248 CCTTGCCCAGATTCTCCTTGG 60.684 57.143 0.00 0.00 0.00 3.61
1284 1330 1.301677 CTTCGCCCTCAAAGTGCTCC 61.302 60.000 0.00 0.00 0.00 4.70
1383 1429 2.525629 TCCTCCGGACTTGCCACA 60.526 61.111 0.00 0.00 35.94 4.17
1508 1566 2.121291 TTGACCGCCATTAGCATGAA 57.879 45.000 0.00 0.00 44.04 2.57
1731 1789 2.802787 ATCGTACTCATAGCACTGCC 57.197 50.000 0.00 0.00 0.00 4.85
1767 1825 0.033504 AACTGGGCAGTGTCGTACAG 59.966 55.000 0.00 0.00 41.58 2.74
1849 1907 4.847217 GCTCTGCGTACGACTAGATATTTC 59.153 45.833 21.65 0.00 0.00 2.17
1857 1915 2.933495 AATTGCTCTGCGTACGACTA 57.067 45.000 21.65 3.14 0.00 2.59
1920 1981 3.963383 ATAAGTAAGCCGGCGAAATTG 57.037 42.857 23.20 0.00 0.00 2.32
1921 1982 6.435428 CAATAATAAGTAAGCCGGCGAAATT 58.565 36.000 23.20 20.20 0.00 1.82
1922 1983 5.562113 GCAATAATAAGTAAGCCGGCGAAAT 60.562 40.000 23.20 9.80 0.00 2.17
1923 1984 4.260866 GCAATAATAAGTAAGCCGGCGAAA 60.261 41.667 23.20 7.67 0.00 3.46
1925 1986 2.803956 GCAATAATAAGTAAGCCGGCGA 59.196 45.455 23.20 10.93 0.00 5.54
1927 1988 4.830826 AAGCAATAATAAGTAAGCCGGC 57.169 40.909 21.89 21.89 0.00 6.13
1973 2168 9.379791 AGTTAATTGTAACCAGCTCTGTATAAC 57.620 33.333 0.00 0.00 40.55 1.89
2080 2275 3.004315 ACATTTTCAGCGAAAACCACGAT 59.996 39.130 15.32 0.00 42.98 3.73
2116 2311 5.120399 ACTCGACAAAACACATGAAGGTTA 58.880 37.500 0.00 0.00 0.00 2.85
2360 2669 2.777459 CCCAGGGGTACTCTAGTCAT 57.223 55.000 0.00 0.00 0.00 3.06
2403 2712 8.746922 TTATGTCAAATGAATTGCTTCTTGAC 57.253 30.769 11.09 11.09 41.89 3.18
2528 2841 3.077359 GAGCAGTGCCTTCAGTTATTGT 58.923 45.455 12.58 0.00 0.00 2.71
2544 2857 2.425312 AGAGGTCATGAACTACGAGCAG 59.575 50.000 14.70 0.00 0.00 4.24
2545 2858 2.447443 AGAGGTCATGAACTACGAGCA 58.553 47.619 14.70 0.00 0.00 4.26
2596 2909 3.791320 TGAGTATCAGACAAAGAGGGGT 58.209 45.455 0.00 0.00 42.56 4.95
2812 3125 2.084546 CTTGGAAACTAGAAAGGGGCG 58.915 52.381 0.00 0.00 34.95 6.13
2834 3147 2.346766 AGGTGAACATGTTGTGCAGA 57.653 45.000 17.58 0.00 36.39 4.26
3006 3319 9.899661 AATTTTCCTTTTAAGTAGCCTTTTGTT 57.100 25.926 0.00 0.00 31.89 2.83
3075 3388 3.118261 TGTTGCAGAAGTTTCTCTGGTCT 60.118 43.478 3.00 0.00 42.68 3.85
3142 3455 3.197790 CTGGAACCTGCGCCATCG 61.198 66.667 4.18 0.00 39.07 3.84
3300 3613 2.026822 ACTGAAGATGCCGACCTGAATT 60.027 45.455 0.00 0.00 0.00 2.17
3336 3649 2.203922 TGCCTGCTGGGGTGACTA 60.204 61.111 12.06 0.00 35.12 2.59
3375 3688 5.426509 TGGAATCTCTCTCCTTATGCTTTCA 59.573 40.000 0.00 0.00 33.77 2.69
3391 3704 4.335037 GTGCTTTGGAGAGAATGGAATCTC 59.665 45.833 0.00 0.00 45.06 2.75
3395 3708 2.108075 TGGTGCTTTGGAGAGAATGGAA 59.892 45.455 0.00 0.00 0.00 3.53
3514 3827 6.260700 TGGTGCATATATGGAAAACTAGGT 57.739 37.500 14.51 0.00 0.00 3.08
3526 3839 8.156820 TGTGCTTATACTCTTTGGTGCATATAT 58.843 33.333 0.00 0.00 0.00 0.86
3527 3840 7.505258 TGTGCTTATACTCTTTGGTGCATATA 58.495 34.615 0.00 0.00 0.00 0.86
3649 3973 3.117093 CCTCTTGACTAGACCCTGGGATA 60.117 52.174 22.23 10.82 0.00 2.59
3692 4016 5.049828 TGTGCCAACTATATCTGTGAATCG 58.950 41.667 0.00 0.00 0.00 3.34
3707 4031 6.435430 TGAATGTATAGTTGATGTGCCAAC 57.565 37.500 0.00 0.00 44.92 3.77
3768 4092 4.537135 TGGTGTCTACATCCAAGAAGAC 57.463 45.455 0.00 0.00 39.04 3.01
3813 4137 5.443185 TTTCTTTTGAGACAGCCTTCATG 57.557 39.130 0.00 0.00 0.00 3.07
3964 4288 8.671921 AGATGATAATTCATGTCGGCAAATATC 58.328 33.333 0.00 0.00 42.73 1.63
4048 4372 6.638468 CACAAGAGTAACTCAATTTTTGGCTC 59.362 38.462 0.00 0.00 32.06 4.70
4163 4487 3.005261 TGCACAAAACGGAAGCATAACAT 59.995 39.130 0.00 0.00 0.00 2.71
4166 4490 3.717400 TTGCACAAAACGGAAGCATAA 57.283 38.095 0.00 0.00 34.87 1.90
4216 4540 2.225727 CACTCGGCAGTTACCTTTTTCC 59.774 50.000 0.00 0.00 0.00 3.13
4429 4753 5.237048 GCTTTCTCCTCTCCATGCTAATAG 58.763 45.833 0.00 0.00 0.00 1.73
4472 4796 2.930040 GAGGTACAATGATGTGTCCACG 59.070 50.000 0.00 0.00 40.84 4.94
4582 4907 5.815581 AGTATCCTGGTGCAAAACATAGAA 58.184 37.500 0.00 0.00 0.00 2.10
4645 4970 0.040067 CGTCAGCTCCCTTGTTTTGC 60.040 55.000 0.00 0.00 0.00 3.68
4881 5206 3.828875 AGCTTCCTAATGGTCAGCTAC 57.171 47.619 8.88 0.00 43.94 3.58
4935 5260 2.224354 TGCAGAGCACTGAAATCTGTCA 60.224 45.455 15.88 3.15 46.03 3.58
5338 5665 5.909621 AAACAGATAGCACTTGCAATGAT 57.090 34.783 0.00 2.18 45.16 2.45
5341 5668 7.829725 TCAAATAAACAGATAGCACTTGCAAT 58.170 30.769 0.00 0.00 45.16 3.56
5723 6050 1.279496 CCCTCTCAGACAATGTGGGA 58.721 55.000 0.00 0.00 37.26 4.37
5754 6081 9.670442 ACTATTACCCTGTGGATCTTCTATTAA 57.330 33.333 0.00 0.00 34.81 1.40
5834 6161 6.267928 AGGAACTTTCAACAGCTAGAAGTAGA 59.732 38.462 0.00 0.00 27.25 2.59
6168 6497 6.703607 CAGAGTTCACAAGTAGACAAGTCATT 59.296 38.462 2.72 0.00 0.00 2.57
6194 6523 5.276254 GGACTAATGACGCATTTAACTCGAC 60.276 44.000 9.73 0.00 35.54 4.20
6209 6538 9.793259 AAAGAGTTTGAGTTAATGGACTAATGA 57.207 29.630 0.00 0.00 0.00 2.57
6238 6567 4.632153 TCTGAGTTCTTGGTCTAAAGTGC 58.368 43.478 0.00 0.00 0.00 4.40
6303 6632 3.977312 TCTCTCCTGGATCGGTTTTAGA 58.023 45.455 0.00 0.00 0.00 2.10
6305 6634 5.247564 TCTTTTCTCTCCTGGATCGGTTTTA 59.752 40.000 0.00 0.00 0.00 1.52
6317 6646 2.288273 CGTGGACGTTCTTTTCTCTCCT 60.288 50.000 0.00 0.00 34.11 3.69
6347 6676 1.195448 CGGTTCAAGATATGCCGATGC 59.805 52.381 0.00 0.00 44.57 3.91
6354 6683 0.504384 CGCGAGCGGTTCAAGATATG 59.496 55.000 9.90 0.00 35.56 1.78
6355 6684 2.886859 CGCGAGCGGTTCAAGATAT 58.113 52.632 9.90 0.00 35.56 1.63
6396 6725 3.801594 TGACGGCTTCTTTTGCAAAAATC 59.198 39.130 23.92 13.10 0.00 2.17
6397 6726 3.555547 GTGACGGCTTCTTTTGCAAAAAT 59.444 39.130 23.92 5.44 0.00 1.82
6398 6727 2.926838 GTGACGGCTTCTTTTGCAAAAA 59.073 40.909 23.92 10.68 0.00 1.94
6413 6742 3.376859 TGCCATTAGCTAAATTGTGACGG 59.623 43.478 10.85 2.82 44.23 4.79
6446 6777 5.923114 CACTCAATACACTGCTCGCTTATAT 59.077 40.000 0.00 0.00 0.00 0.86
6447 6778 5.281727 CACTCAATACACTGCTCGCTTATA 58.718 41.667 0.00 0.00 0.00 0.98
6623 6960 3.117888 ACCTGATGCCCGATGTCTTTTAT 60.118 43.478 0.00 0.00 0.00 1.40
6637 6974 1.952296 CCATTCAAGCCTACCTGATGC 59.048 52.381 0.00 0.00 0.00 3.91
6638 6975 2.579873 CCCATTCAAGCCTACCTGATG 58.420 52.381 0.00 0.00 0.00 3.07
6689 7026 2.288666 GAACCGATTTGCATCCTAGCA 58.711 47.619 0.00 0.00 43.99 3.49
6691 7028 3.185188 CGATGAACCGATTTGCATCCTAG 59.815 47.826 0.00 0.00 35.01 3.02
6720 7057 3.054582 TGATGCATGGCTCTTCTTCTCTT 60.055 43.478 2.46 0.00 0.00 2.85
6721 7058 2.504585 TGATGCATGGCTCTTCTTCTCT 59.495 45.455 2.46 0.00 0.00 3.10
6722 7059 2.915349 TGATGCATGGCTCTTCTTCTC 58.085 47.619 2.46 0.00 0.00 2.87
6732 7069 0.946528 TTGCGAGTATGATGCATGGC 59.053 50.000 2.46 0.00 38.60 4.40
6765 7103 4.082787 GCTGCAAAATAGTTGTCCTGCTAA 60.083 41.667 0.00 0.00 0.00 3.09
6834 7172 2.639839 TCTTCTCCTCTCCTTGTTTGGG 59.360 50.000 0.00 0.00 0.00 4.12
6840 7178 6.091441 CGTATTTGTTTCTTCTCCTCTCCTTG 59.909 42.308 0.00 0.00 0.00 3.61
6841 7179 6.166982 CGTATTTGTTTCTTCTCCTCTCCTT 58.833 40.000 0.00 0.00 0.00 3.36
6865 7203 2.728846 CGCAAGCATCCACAATGTGTAC 60.729 50.000 12.79 0.00 37.71 2.90
6879 7217 1.075542 CAAACGAGATACCGCAAGCA 58.924 50.000 0.00 0.00 0.00 3.91
6916 7254 1.388547 TCAAGATATGTTTGGCCGGC 58.611 50.000 21.18 21.18 0.00 6.13
6953 7291 8.995027 ACCATCATTACATGCTCCTTTTATTA 57.005 30.769 0.00 0.00 0.00 0.98
7017 7449 8.312669 AGGATGGAAGCTTAGTATATATCACC 57.687 38.462 0.00 0.00 0.00 4.02
7280 7754 4.947388 CCAAAACCGATCTGGGAGATAAAA 59.053 41.667 8.20 0.00 44.64 1.52
7353 7827 3.699038 TGCACACTTTAGGCAAAGAACTT 59.301 39.130 13.77 0.00 43.32 2.66
7437 7911 3.208747 AGACATTGTTTCAGGGTTCGT 57.791 42.857 0.00 0.00 0.00 3.85
7445 7919 4.163441 TCACAGGGAAGACATTGTTTCA 57.837 40.909 11.30 0.00 0.00 2.69
7452 7926 5.249393 AGTTCTTGTATCACAGGGAAGACAT 59.751 40.000 0.00 0.00 0.00 3.06
7540 8014 8.235230 TCCTCCTATGAAATGTACTCCTAAGAT 58.765 37.037 0.00 0.00 0.00 2.40
7647 8121 3.364366 GCTTCAGTACATTGCACTGTGAC 60.364 47.826 19.05 12.59 43.21 3.67
7722 8196 1.134699 TGAAAGATCTGGTAGCTGCCG 60.135 52.381 16.65 10.97 0.00 5.69
7734 8208 6.705863 AAATTATCTGGCCACTGAAAGATC 57.294 37.500 0.00 0.00 37.43 2.75
7773 8247 8.211030 TCAGATGATTATTGGATAGTGGATGT 57.789 34.615 0.00 0.00 0.00 3.06
7845 8319 9.443365 AGTATTACCCAAGGAGCTAACTTATTA 57.557 33.333 3.08 0.00 0.00 0.98
7894 8369 5.384063 TCTGTGAAAAGAAACAGCAACAA 57.616 34.783 0.00 0.00 42.88 2.83
7979 8455 2.311854 CCTCAGGGGGATGCTTGGT 61.312 63.158 0.00 0.00 0.00 3.67
7990 8466 1.376466 CACAGGTGGTTCCTCAGGG 59.624 63.158 0.00 0.00 46.24 4.45
8085 8561 0.847373 TTGCTTAACCAGTGGGACCA 59.153 50.000 15.21 0.09 38.05 4.02
8196 8672 0.524862 GTGGTTCTTGGATGCAGCTG 59.475 55.000 10.11 10.11 0.00 4.24
8260 8736 3.772853 TTCAGCGCAGGGTGTTGCT 62.773 57.895 11.47 0.00 41.90 3.91
8261 8737 2.348605 TTTTCAGCGCAGGGTGTTGC 62.349 55.000 11.47 0.00 42.25 4.17
8301 8777 2.549754 CGAATGTCCACTGTTTTCTGCT 59.450 45.455 0.00 0.00 0.00 4.24
8306 8782 3.139077 GAGACCGAATGTCCACTGTTTT 58.861 45.455 0.00 0.00 45.68 2.43
8310 8786 0.898320 AGGAGACCGAATGTCCACTG 59.102 55.000 5.76 0.00 43.60 3.66
8311 8787 1.550976 GAAGGAGACCGAATGTCCACT 59.449 52.381 5.76 0.00 43.60 4.00
8335 8811 6.601332 ACAAGAATTCCCAGAGTTTGACTTA 58.399 36.000 0.65 0.00 0.00 2.24
8341 8817 4.279420 GCTGAACAAGAATTCCCAGAGTTT 59.721 41.667 0.65 0.00 0.00 2.66
8424 8900 0.942962 CTTTGCGGATGAGGATGAGC 59.057 55.000 0.00 0.00 0.00 4.26
8435 8911 0.387565 GTTTTTGGAGCCTTTGCGGA 59.612 50.000 0.00 0.00 44.33 5.54
8512 8988 3.324846 AGTTCCCCATTTTTGGCTTCTTC 59.675 43.478 0.00 0.00 0.00 2.87
8583 9059 3.766591 TGACTTTCCTGTTTTTGGCTTCA 59.233 39.130 0.00 0.00 0.00 3.02
8590 9066 5.694995 TCTGGAGATGACTTTCCTGTTTTT 58.305 37.500 0.00 0.00 34.91 1.94
8608 9084 1.340405 GCCTGCTTCTTTCCATCTGGA 60.340 52.381 0.00 0.00 43.73 3.86
8640 9116 3.555324 TCCTTGCAGGTGCGGACA 61.555 61.111 9.96 0.00 45.83 4.02
8746 9222 4.725490 TGCTTCAGTAAACCTTAGGCTTT 58.275 39.130 0.00 1.26 0.00 3.51
8838 9314 1.986378 CTACGAACTTCAGCAAGACGG 59.014 52.381 0.00 0.00 37.31 4.79
9066 9545 2.091610 TCAAACATCACCAACCAAGGGA 60.092 45.455 0.00 0.00 0.00 4.20
9164 9643 4.393062 TCCGTCCCGTAATATAAGATCGTC 59.607 45.833 0.00 0.00 0.00 4.20
9244 9723 0.179089 CAGGAGGGCAGACTGATTCG 60.179 60.000 6.65 0.00 34.21 3.34
9299 9778 1.402787 CAACTGAAGGTGCAAGGGTT 58.597 50.000 0.00 0.00 0.00 4.11
9416 9896 4.837093 ATTCCGACCAGTAAATCCAAGA 57.163 40.909 0.00 0.00 0.00 3.02
9424 9904 6.384886 AGAAGGGTAAATATTCCGACCAGTAA 59.615 38.462 13.35 0.00 33.33 2.24
9425 9905 5.901276 AGAAGGGTAAATATTCCGACCAGTA 59.099 40.000 13.35 0.00 33.33 2.74
9511 9991 2.427095 GGAAAGGTTGCGCTTATTCCAT 59.573 45.455 9.73 0.00 37.02 3.41
9517 9997 2.577700 TGAAAGGAAAGGTTGCGCTTA 58.422 42.857 9.73 0.00 0.00 3.09
9592 10198 4.100653 AGGACACATCTACTCCATGACATG 59.899 45.833 8.56 8.56 0.00 3.21
9603 10209 6.217294 GGTCATAAAGCTAGGACACATCTAC 58.783 44.000 3.90 0.00 39.98 2.59
9638 10244 0.652592 GCATGCTGACGCTTACGAAT 59.347 50.000 11.37 0.00 43.93 3.34
9734 10340 3.439476 CCTGGTCTTGAAATCTTCAGCAG 59.561 47.826 0.00 0.00 41.38 4.24
9735 10341 3.181440 ACCTGGTCTTGAAATCTTCAGCA 60.181 43.478 0.00 0.00 41.38 4.41
9736 10342 3.416156 ACCTGGTCTTGAAATCTTCAGC 58.584 45.455 0.00 0.00 41.38 4.26
9737 10343 5.181748 CCTACCTGGTCTTGAAATCTTCAG 58.818 45.833 0.63 0.00 41.38 3.02
9738 10344 5.165961 CCTACCTGGTCTTGAAATCTTCA 57.834 43.478 0.63 0.00 38.04 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.