Multiple sequence alignment - TraesCS7A01G393800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G393800 chr7A 100.000 5597 0 0 1 5597 571941584 571935988 0.000000e+00 10336.0
1 TraesCS7A01G393800 chr7A 81.269 977 153 20 3637 4587 572182191 572181219 0.000000e+00 763.0
2 TraesCS7A01G393800 chr7A 81.142 981 160 17 3637 4598 572236563 572235589 0.000000e+00 763.0
3 TraesCS7A01G393800 chr7A 85.177 452 60 7 1763 2210 287892842 287892394 1.840000e-124 457.0
4 TraesCS7A01G393800 chr7A 94.915 236 12 0 141 376 721097405 721097170 2.460000e-98 370.0
5 TraesCS7A01G393800 chr7A 88.929 280 31 0 1015 1294 572185571 572185292 4.150000e-91 346.0
6 TraesCS7A01G393800 chr7A 88.929 280 31 0 1015 1294 572238520 572238241 4.150000e-91 346.0
7 TraesCS7A01G393800 chr7A 89.734 263 27 0 2426 2688 572184713 572184451 2.500000e-88 337.0
8 TraesCS7A01G393800 chr7A 87.405 262 33 0 2426 2687 572237844 572237583 9.110000e-78 302.0
9 TraesCS7A01G393800 chr7A 92.935 184 12 1 3418 3601 572236815 572236633 3.320000e-67 267.0
10 TraesCS7A01G393800 chr7A 91.573 178 14 1 3426 3603 572182438 572182262 1.560000e-60 244.0
11 TraesCS7A01G393800 chr7A 88.608 158 11 5 2744 2898 572183121 572182968 9.580000e-43 185.0
12 TraesCS7A01G393800 chr7D 92.970 3357 161 34 2276 5597 504253908 504250592 0.000000e+00 4822.0
13 TraesCS7A01G393800 chr7D 93.344 1202 40 12 394 1585 504255494 504254323 0.000000e+00 1740.0
14 TraesCS7A01G393800 chr7D 79.453 1207 207 35 3418 4587 504546076 504544874 0.000000e+00 817.0
15 TraesCS7A01G393800 chr7D 81.809 973 152 12 3637 4587 504521960 504520991 0.000000e+00 793.0
16 TraesCS7A01G393800 chr7D 81.606 984 150 21 3637 4598 504536390 504535416 0.000000e+00 785.0
17 TraesCS7A01G393800 chr7D 94.979 239 12 0 138 376 45145728 45145490 5.290000e-100 375.0
18 TraesCS7A01G393800 chr7D 87.778 270 33 0 1022 1291 504524329 504524060 3.250000e-82 316.0
19 TraesCS7A01G393800 chr7D 87.833 263 32 0 2426 2688 504537668 504537406 5.450000e-80 309.0
20 TraesCS7A01G393800 chr7D 93.478 184 11 1 3418 3601 504536642 504536460 7.140000e-69 272.0
21 TraesCS7A01G393800 chr7D 92.147 191 14 1 3413 3603 504522220 504522031 9.240000e-68 268.0
22 TraesCS7A01G393800 chr7D 85.551 263 20 8 2426 2688 504523585 504523341 5.560000e-65 259.0
23 TraesCS7A01G393800 chr7D 95.122 123 4 1 20 142 504255643 504255523 5.720000e-45 193.0
24 TraesCS7A01G393800 chr7D 88.750 160 11 5 2742 2898 504522893 504522738 7.400000e-44 189.0
25 TraesCS7A01G393800 chr7B 95.319 2307 82 12 3304 5597 532290742 532288449 0.000000e+00 3639.0
26 TraesCS7A01G393800 chr7B 94.982 837 26 7 457 1291 532294549 532293727 0.000000e+00 1299.0
27 TraesCS7A01G393800 chr7B 91.634 777 31 11 2245 3002 532292154 532291393 0.000000e+00 1044.0
28 TraesCS7A01G393800 chr7B 85.603 896 110 14 1333 2210 532293729 532292835 0.000000e+00 922.0
29 TraesCS7A01G393800 chr7B 80.330 971 166 19 3638 4588 532462917 532461952 0.000000e+00 712.0
30 TraesCS7A01G393800 chr7B 80.127 629 114 9 3963 4582 532469033 532468407 5.110000e-125 459.0
31 TraesCS7A01G393800 chr7B 93.569 311 13 5 2999 3305 532291353 532291046 1.840000e-124 457.0
32 TraesCS7A01G393800 chr7B 89.630 270 27 1 2423 2691 532483881 532483612 5.370000e-90 342.0
33 TraesCS7A01G393800 chr7B 87.857 280 31 1 1015 1291 532484748 532484469 5.410000e-85 326.0
34 TraesCS7A01G393800 chr7B 87.405 262 33 0 2426 2687 532464398 532464137 9.110000e-78 302.0
35 TraesCS7A01G393800 chr7B 95.161 186 8 1 3418 3603 532482525 532482341 5.480000e-75 292.0
36 TraesCS7A01G393800 chr7B 92.746 193 12 2 3412 3603 532463176 532462985 1.540000e-70 278.0
37 TraesCS7A01G393800 chr7B 90.062 161 14 2 3637 3795 532482270 532482110 2.040000e-49 207.0
38 TraesCS7A01G393800 chr7B 86.243 189 17 7 2713 2898 532482835 532482653 4.420000e-46 196.0
39 TraesCS7A01G393800 chr7B 92.683 123 6 2 20 142 532294847 532294728 2.070000e-39 174.0
40 TraesCS7A01G393800 chr7B 84.173 139 19 2 3832 3967 532481940 532481802 1.270000e-26 132.0
41 TraesCS7A01G393800 chr7B 86.087 115 14 2 1454 1567 532464758 532464645 7.610000e-24 122.0
42 TraesCS7A01G393800 chr7B 94.203 69 1 1 394 459 532294699 532294631 9.920000e-18 102.0
43 TraesCS7A01G393800 chr3D 85.360 444 61 4 1769 2209 10639404 10639846 1.840000e-124 457.0
44 TraesCS7A01G393800 chrUn 84.889 450 65 3 1763 2209 68801244 68800795 8.550000e-123 451.0
45 TraesCS7A01G393800 chrUn 94.894 235 12 0 141 375 48038204 48037970 8.860000e-98 368.0
46 TraesCS7A01G393800 chrUn 94.894 235 12 0 141 375 248181183 248181417 8.860000e-98 368.0
47 TraesCS7A01G393800 chrUn 91.667 48 4 0 1238 1285 36508559 36508606 3.620000e-07 67.6
48 TraesCS7A01G393800 chr2B 84.222 469 67 7 1748 2210 409327734 409328201 3.080000e-122 449.0
49 TraesCS7A01G393800 chr5B 83.940 467 70 5 1748 2210 652623992 652624457 5.150000e-120 442.0
50 TraesCS7A01G393800 chr3B 83.871 465 70 5 1748 2207 21384042 21383578 6.660000e-119 438.0
51 TraesCS7A01G393800 chr3B 84.946 93 14 0 1463 1555 792858628 792858720 1.660000e-15 95.3
52 TraesCS7A01G393800 chr1B 83.830 470 67 9 1748 2210 30713297 30713764 6.660000e-119 438.0
53 TraesCS7A01G393800 chr6B 83.438 477 72 7 1740 2210 120821250 120821725 2.390000e-118 436.0
54 TraesCS7A01G393800 chr5D 95.745 235 10 0 141 375 129481579 129481345 4.090000e-101 379.0
55 TraesCS7A01G393800 chr4A 94.628 242 12 1 136 377 99024252 99024492 1.900000e-99 374.0
56 TraesCS7A01G393800 chr4B 94.894 235 12 0 141 375 3438408 3438642 8.860000e-98 368.0
57 TraesCS7A01G393800 chr4D 94.191 241 13 1 135 375 64665076 64665315 3.190000e-97 366.0
58 TraesCS7A01G393800 chr2A 93.522 247 15 1 141 386 29278093 29277847 3.190000e-97 366.0
59 TraesCS7A01G393800 chr6A 80.916 262 50 0 2426 2687 176982788 176983049 2.040000e-49 207.0
60 TraesCS7A01G393800 chr3A 83.654 104 17 0 1463 1566 722275754 722275857 1.280000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G393800 chr7A 571935988 571941584 5596 True 10336.000000 10336 100.000000 1 5597 1 chr7A.!!$R2 5596
1 TraesCS7A01G393800 chr7A 572235589 572238520 2931 True 419.500000 763 87.602750 1015 4598 4 chr7A.!!$R5 3583
2 TraesCS7A01G393800 chr7A 572181219 572185571 4352 True 375.000000 763 88.022600 1015 4587 5 chr7A.!!$R4 3572
3 TraesCS7A01G393800 chr7D 504250592 504255643 5051 True 2251.666667 4822 93.812000 20 5597 3 chr7D.!!$R3 5577
4 TraesCS7A01G393800 chr7D 504544874 504546076 1202 True 817.000000 817 79.453000 3418 4587 1 chr7D.!!$R2 1169
5 TraesCS7A01G393800 chr7D 504535416 504537668 2252 True 455.333333 785 87.639000 2426 4598 3 chr7D.!!$R5 2172
6 TraesCS7A01G393800 chr7D 504520991 504524329 3338 True 365.000000 793 87.207000 1022 4587 5 chr7D.!!$R4 3565
7 TraesCS7A01G393800 chr7B 532288449 532294847 6398 True 1091.000000 3639 92.570429 20 5597 7 chr7B.!!$R1 5577
8 TraesCS7A01G393800 chr7B 532461952 532469033 7081 True 374.600000 712 85.339000 1454 4588 5 chr7B.!!$R2 3134
9 TraesCS7A01G393800 chr7B 532481802 532484748 2946 True 249.166667 342 88.854333 1015 3967 6 chr7B.!!$R3 2952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1100 0.177373 TACTCGCCTCTCGTCTGCTA 59.823 55.0 0.00 0.0 39.67 3.49 F
1991 5212 0.389817 CGGATCAGAACAGCAACCGA 60.390 55.0 0.00 0.0 41.09 4.69 F
2210 5517 0.103937 GCCATCTCGTCTTCCTGAGG 59.896 60.0 0.00 0.0 33.00 3.86 F
2773 8905 0.168348 GCTGCTGCTGATTCTGTGTG 59.832 55.0 10.92 0.0 36.03 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 5499 0.103937 GCCTCAGGAAGACGAGATGG 59.896 60.0 0.00 0.00 0.00 3.51 R
3424 10082 0.250124 CACACCAGCGGTTCCTGTTA 60.250 55.0 0.00 0.00 31.02 2.41 R
3913 10746 0.504384 CCGATTATCTTGCGCACGAG 59.496 55.0 21.65 12.68 0.00 4.18 R
4695 11547 0.449388 GCTTCACAGCACATGCCTAC 59.551 55.0 0.00 0.00 46.49 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.782244 CTCTGCAACGCCGCACTC 61.782 66.667 0.00 0.00 36.86 3.51
41 42 9.383519 ACTCTGTAAAACATGTCCTATTATGTG 57.616 33.333 0.00 0.08 37.57 3.21
142 143 5.237996 GGTACAAGGTCTCAAGTTTTGGTAC 59.762 44.000 0.00 0.00 0.00 3.34
143 144 5.112129 ACAAGGTCTCAAGTTTTGGTACT 57.888 39.130 0.00 0.00 0.00 2.73
144 145 5.506708 ACAAGGTCTCAAGTTTTGGTACTT 58.493 37.500 0.00 0.00 38.87 2.24
145 146 5.589050 ACAAGGTCTCAAGTTTTGGTACTTC 59.411 40.000 0.00 0.00 36.24 3.01
146 147 4.715713 AGGTCTCAAGTTTTGGTACTTCC 58.284 43.478 0.00 0.00 36.24 3.46
147 148 4.412528 AGGTCTCAAGTTTTGGTACTTCCT 59.587 41.667 0.00 0.00 36.24 3.36
148 149 4.755629 GGTCTCAAGTTTTGGTACTTCCTC 59.244 45.833 0.00 0.00 36.24 3.71
149 150 4.755629 GTCTCAAGTTTTGGTACTTCCTCC 59.244 45.833 0.00 0.00 36.24 4.30
150 151 3.735591 TCAAGTTTTGGTACTTCCTCCG 58.264 45.455 0.00 0.00 36.24 4.63
151 152 3.135167 TCAAGTTTTGGTACTTCCTCCGT 59.865 43.478 0.00 0.00 36.24 4.69
152 153 3.397849 AGTTTTGGTACTTCCTCCGTC 57.602 47.619 0.00 0.00 37.07 4.79
153 154 2.701951 AGTTTTGGTACTTCCTCCGTCA 59.298 45.455 0.00 0.00 37.07 4.35
155 156 0.599558 TTGGTACTTCCTCCGTCACG 59.400 55.000 0.00 0.00 37.07 4.35
169 170 1.253999 GTCACGGTTTAGTAGTCGCG 58.746 55.000 0.00 0.00 0.00 5.87
170 171 0.454957 TCACGGTTTAGTAGTCGCGC 60.455 55.000 0.00 0.00 0.00 6.86
171 172 0.455633 CACGGTTTAGTAGTCGCGCT 60.456 55.000 5.56 4.52 0.00 5.92
172 173 0.242017 ACGGTTTAGTAGTCGCGCTT 59.758 50.000 5.56 0.00 0.00 4.68
173 174 0.638746 CGGTTTAGTAGTCGCGCTTG 59.361 55.000 5.56 0.00 0.00 4.01
174 175 1.706443 GGTTTAGTAGTCGCGCTTGT 58.294 50.000 5.56 0.00 0.00 3.16
176 177 3.244976 GGTTTAGTAGTCGCGCTTGTAA 58.755 45.455 5.56 1.19 0.00 2.41
178 179 4.328169 GGTTTAGTAGTCGCGCTTGTAAAT 59.672 41.667 5.56 0.00 0.00 1.40
179 180 5.163923 GGTTTAGTAGTCGCGCTTGTAAATT 60.164 40.000 5.56 0.00 0.00 1.82
180 181 5.691508 TTAGTAGTCGCGCTTGTAAATTC 57.308 39.130 5.56 0.00 0.00 2.17
181 182 3.846360 AGTAGTCGCGCTTGTAAATTCT 58.154 40.909 5.56 0.00 0.00 2.40
183 184 2.960819 AGTCGCGCTTGTAAATTCTCT 58.039 42.857 5.56 0.00 0.00 3.10
184 185 2.668457 AGTCGCGCTTGTAAATTCTCTG 59.332 45.455 5.56 0.00 0.00 3.35
185 186 1.999735 TCGCGCTTGTAAATTCTCTGG 59.000 47.619 5.56 0.00 0.00 3.86
186 187 1.062587 CGCGCTTGTAAATTCTCTGGG 59.937 52.381 5.56 0.00 0.00 4.45
187 188 2.356135 GCGCTTGTAAATTCTCTGGGA 58.644 47.619 0.00 0.00 0.00 4.37
188 189 2.096013 GCGCTTGTAAATTCTCTGGGAC 59.904 50.000 0.00 0.00 0.00 4.46
189 190 2.678336 CGCTTGTAAATTCTCTGGGACC 59.322 50.000 0.00 0.00 0.00 4.46
192 193 5.119694 GCTTGTAAATTCTCTGGGACCTAG 58.880 45.833 0.00 0.00 0.00 3.02
196 197 2.182516 ATTCTCTGGGACCTAGGTGG 57.817 55.000 22.10 6.79 42.93 4.61
211 212 6.248569 CCTAGGTGGTTATCTATTGGTTGT 57.751 41.667 0.00 0.00 0.00 3.32
212 213 7.369551 CCTAGGTGGTTATCTATTGGTTGTA 57.630 40.000 0.00 0.00 0.00 2.41
215 216 7.504926 AGGTGGTTATCTATTGGTTGTAAGA 57.495 36.000 0.00 0.00 0.00 2.10
217 218 7.993183 AGGTGGTTATCTATTGGTTGTAAGATG 59.007 37.037 0.00 0.00 31.38 2.90
218 219 7.228706 GGTGGTTATCTATTGGTTGTAAGATGG 59.771 40.741 0.00 0.00 31.38 3.51
219 220 6.770785 TGGTTATCTATTGGTTGTAAGATGGC 59.229 38.462 0.00 0.00 31.38 4.40
220 221 6.206829 GGTTATCTATTGGTTGTAAGATGGCC 59.793 42.308 0.00 0.00 31.38 5.36
222 223 6.763715 ATCTATTGGTTGTAAGATGGCCTA 57.236 37.500 3.32 0.00 0.00 3.93
224 225 6.591935 TCTATTGGTTGTAAGATGGCCTAAG 58.408 40.000 3.32 0.00 0.00 2.18
225 226 4.919774 TTGGTTGTAAGATGGCCTAAGA 57.080 40.909 3.32 0.00 0.00 2.10
226 227 4.919774 TGGTTGTAAGATGGCCTAAGAA 57.080 40.909 3.32 0.00 0.00 2.52
228 229 5.826643 TGGTTGTAAGATGGCCTAAGAAAT 58.173 37.500 3.32 0.00 0.00 2.17
229 230 6.964464 TGGTTGTAAGATGGCCTAAGAAATA 58.036 36.000 3.32 0.00 0.00 1.40
230 231 7.054124 TGGTTGTAAGATGGCCTAAGAAATAG 58.946 38.462 3.32 0.00 0.00 1.73
231 232 6.017026 GGTTGTAAGATGGCCTAAGAAATAGC 60.017 42.308 3.32 0.00 0.00 2.97
232 233 6.247229 TGTAAGATGGCCTAAGAAATAGCA 57.753 37.500 3.32 0.00 0.00 3.49
233 234 6.841601 TGTAAGATGGCCTAAGAAATAGCAT 58.158 36.000 3.32 0.00 0.00 3.79
235 236 6.890979 AAGATGGCCTAAGAAATAGCATTC 57.109 37.500 3.32 0.00 0.00 2.67
236 237 5.945310 AGATGGCCTAAGAAATAGCATTCA 58.055 37.500 3.32 0.00 0.00 2.57
237 238 5.767168 AGATGGCCTAAGAAATAGCATTCAC 59.233 40.000 3.32 0.00 0.00 3.18
238 239 4.854173 TGGCCTAAGAAATAGCATTCACA 58.146 39.130 3.32 0.00 0.00 3.58
239 240 4.640201 TGGCCTAAGAAATAGCATTCACAC 59.360 41.667 3.32 0.00 0.00 3.82
240 241 4.884164 GGCCTAAGAAATAGCATTCACACT 59.116 41.667 0.00 0.00 0.00 3.55
241 242 6.055588 GGCCTAAGAAATAGCATTCACACTA 58.944 40.000 0.00 0.00 0.00 2.74
242 243 6.017852 GGCCTAAGAAATAGCATTCACACTAC 60.018 42.308 0.00 0.00 0.00 2.73
243 244 6.292381 GCCTAAGAAATAGCATTCACACTACG 60.292 42.308 0.00 0.00 0.00 3.51
244 245 5.470845 AAGAAATAGCATTCACACTACGC 57.529 39.130 0.00 0.00 0.00 4.42
247 248 4.801147 AATAGCATTCACACTACGCATG 57.199 40.909 0.00 0.00 0.00 4.06
248 249 0.729116 AGCATTCACACTACGCATGC 59.271 50.000 7.91 7.91 40.53 4.06
249 250 0.447406 GCATTCACACTACGCATGCA 59.553 50.000 19.57 0.00 40.06 3.96
250 251 1.064505 GCATTCACACTACGCATGCAT 59.935 47.619 19.57 4.54 40.06 3.96
251 252 2.287644 GCATTCACACTACGCATGCATA 59.712 45.455 19.57 5.77 40.06 3.14
252 253 3.058708 GCATTCACACTACGCATGCATAT 60.059 43.478 19.57 4.84 40.06 1.78
254 255 5.669602 GCATTCACACTACGCATGCATATAG 60.670 44.000 19.57 17.15 40.06 1.31
255 256 4.846779 TCACACTACGCATGCATATAGA 57.153 40.909 19.57 3.38 0.00 1.98
256 257 5.195001 TCACACTACGCATGCATATAGAA 57.805 39.130 19.57 2.99 0.00 2.10
257 258 5.596845 TCACACTACGCATGCATATAGAAA 58.403 37.500 19.57 0.00 0.00 2.52
258 259 6.223120 TCACACTACGCATGCATATAGAAAT 58.777 36.000 19.57 4.78 0.00 2.17
259 260 7.375053 TCACACTACGCATGCATATAGAAATA 58.625 34.615 19.57 3.27 0.00 1.40
262 263 8.520351 ACACTACGCATGCATATAGAAATAGTA 58.480 33.333 19.57 6.04 0.00 1.82
263 264 9.521503 CACTACGCATGCATATAGAAATAGTAT 57.478 33.333 19.57 0.00 0.00 2.12
267 268 9.399403 ACGCATGCATATAGAAATAGTATATCG 57.601 33.333 19.57 0.00 0.00 2.92
268 269 8.854312 CGCATGCATATAGAAATAGTATATCGG 58.146 37.037 19.57 0.00 0.00 4.18
269 270 9.914131 GCATGCATATAGAAATAGTATATCGGA 57.086 33.333 14.21 0.00 0.00 4.55
290 291 9.790344 ATCGGAGTACTAATTAGCTACTAGAAA 57.210 33.333 19.17 11.04 0.00 2.52
291 292 9.790344 TCGGAGTACTAATTAGCTACTAGAAAT 57.210 33.333 19.17 0.00 0.00 2.17
304 305 6.260936 AGCTACTAGAAATAAATGCAATGCGT 59.739 34.615 0.00 0.00 0.00 5.24
305 306 6.575201 GCTACTAGAAATAAATGCAATGCGTC 59.425 38.462 0.00 0.00 0.00 5.19
306 307 5.821204 ACTAGAAATAAATGCAATGCGTCC 58.179 37.500 0.00 0.00 0.00 4.79
307 308 4.989279 AGAAATAAATGCAATGCGTCCT 57.011 36.364 0.00 0.00 0.00 3.85
308 309 6.765989 ACTAGAAATAAATGCAATGCGTCCTA 59.234 34.615 0.00 0.00 0.00 2.94
310 311 6.862209 AGAAATAAATGCAATGCGTCCTAAA 58.138 32.000 0.00 0.00 0.00 1.85
311 312 6.751888 AGAAATAAATGCAATGCGTCCTAAAC 59.248 34.615 0.00 0.00 0.00 2.01
312 313 2.939460 AATGCAATGCGTCCTAAACC 57.061 45.000 0.00 0.00 0.00 3.27
314 315 1.904287 TGCAATGCGTCCTAAACCTT 58.096 45.000 0.00 0.00 0.00 3.50
315 316 1.539388 TGCAATGCGTCCTAAACCTTG 59.461 47.619 0.00 0.00 0.00 3.61
316 317 1.539827 GCAATGCGTCCTAAACCTTGT 59.460 47.619 0.00 0.00 0.00 3.16
317 318 2.414161 GCAATGCGTCCTAAACCTTGTC 60.414 50.000 0.00 0.00 0.00 3.18
318 319 3.074412 CAATGCGTCCTAAACCTTGTCT 58.926 45.455 0.00 0.00 0.00 3.41
320 321 4.755266 ATGCGTCCTAAACCTTGTCTAT 57.245 40.909 0.00 0.00 0.00 1.98
322 323 5.664294 TGCGTCCTAAACCTTGTCTATTA 57.336 39.130 0.00 0.00 0.00 0.98
323 324 6.229936 TGCGTCCTAAACCTTGTCTATTAT 57.770 37.500 0.00 0.00 0.00 1.28
325 326 5.465724 GCGTCCTAAACCTTGTCTATTATGG 59.534 44.000 0.00 0.00 0.00 2.74
326 327 6.684613 GCGTCCTAAACCTTGTCTATTATGGA 60.685 42.308 0.00 0.00 0.00 3.41
327 328 7.270047 CGTCCTAAACCTTGTCTATTATGGAA 58.730 38.462 0.00 0.00 0.00 3.53
328 329 7.767198 CGTCCTAAACCTTGTCTATTATGGAAA 59.233 37.037 0.00 0.00 0.00 3.13
329 330 8.890718 GTCCTAAACCTTGTCTATTATGGAAAC 58.109 37.037 0.00 0.00 0.00 2.78
330 331 7.767198 TCCTAAACCTTGTCTATTATGGAAACG 59.233 37.037 0.00 0.00 0.00 3.60
334 335 4.273480 CCTTGTCTATTATGGAAACGCAGG 59.727 45.833 0.00 0.00 0.00 4.85
335 336 3.202906 TGTCTATTATGGAAACGCAGGC 58.797 45.455 0.00 0.00 0.00 4.85
338 339 4.095782 GTCTATTATGGAAACGCAGGCAAA 59.904 41.667 0.00 0.00 0.00 3.68
339 340 4.887071 TCTATTATGGAAACGCAGGCAAAT 59.113 37.500 0.00 0.00 0.00 2.32
342 343 3.951775 ATGGAAACGCAGGCAAATTTA 57.048 38.095 0.00 0.00 0.00 1.40
343 344 3.735237 TGGAAACGCAGGCAAATTTAA 57.265 38.095 0.00 0.00 0.00 1.52
344 345 3.385577 TGGAAACGCAGGCAAATTTAAC 58.614 40.909 0.00 0.00 0.00 2.01
345 346 3.068873 TGGAAACGCAGGCAAATTTAACT 59.931 39.130 0.00 0.00 0.00 2.24
346 347 3.428534 GGAAACGCAGGCAAATTTAACTG 59.571 43.478 13.96 13.96 0.00 3.16
347 348 3.726291 AACGCAGGCAAATTTAACTGT 57.274 38.095 17.53 2.47 33.62 3.55
348 349 3.011949 ACGCAGGCAAATTTAACTGTG 57.988 42.857 22.89 22.89 44.58 3.66
360 361 7.096065 GCAAATTTAACTGTGCCTTCTAAACTG 60.096 37.037 0.00 0.00 0.00 3.16
361 362 7.582667 AATTTAACTGTGCCTTCTAAACTGT 57.417 32.000 0.00 0.00 0.00 3.55
362 363 6.371809 TTTAACTGTGCCTTCTAAACTGTG 57.628 37.500 0.00 0.00 0.00 3.66
364 365 3.467803 ACTGTGCCTTCTAAACTGTGAC 58.532 45.455 0.00 0.00 0.00 3.67
366 367 1.798813 GTGCCTTCTAAACTGTGACGG 59.201 52.381 0.00 0.00 0.00 4.79
367 368 1.689813 TGCCTTCTAAACTGTGACGGA 59.310 47.619 0.00 0.00 0.00 4.69
368 369 2.288825 TGCCTTCTAAACTGTGACGGAG 60.289 50.000 0.00 0.00 0.00 4.63
369 370 2.931320 GCCTTCTAAACTGTGACGGAGG 60.931 54.545 0.00 0.00 0.00 4.30
371 372 2.297698 TCTAAACTGTGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
372 373 2.168496 TCTAAACTGTGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
373 374 1.893801 CTAAACTGTGACGGAGGGAGT 59.106 52.381 0.00 0.00 0.00 3.85
392 393 5.402398 GGAGTAAGACAAATTGAACCATGC 58.598 41.667 0.00 0.00 0.00 4.06
415 426 8.311395 TGCCATTAATTGGGTTTATTGACATA 57.689 30.769 6.20 0.00 46.55 2.29
694 807 9.398170 GCAAAATGTTACTGCACCATATATAAG 57.602 33.333 0.00 0.00 36.09 1.73
704 817 9.760077 ACTGCACCATATATAAGTAACTACAAC 57.240 33.333 0.00 0.00 0.00 3.32
705 818 9.204570 CTGCACCATATATAAGTAACTACAACC 57.795 37.037 0.00 0.00 0.00 3.77
706 819 8.706521 TGCACCATATATAAGTAACTACAACCA 58.293 33.333 0.00 0.00 0.00 3.67
707 820 8.985805 GCACCATATATAAGTAACTACAACCAC 58.014 37.037 0.00 0.00 0.00 4.16
708 821 9.188588 CACCATATATAAGTAACTACAACCACG 57.811 37.037 0.00 0.00 0.00 4.94
709 822 8.362639 ACCATATATAAGTAACTACAACCACGG 58.637 37.037 0.00 0.00 0.00 4.94
710 823 8.579006 CCATATATAAGTAACTACAACCACGGA 58.421 37.037 0.00 0.00 0.00 4.69
711 824 9.403110 CATATATAAGTAACTACAACCACGGAC 57.597 37.037 0.00 0.00 0.00 4.79
712 825 5.726980 ATAAGTAACTACAACCACGGACA 57.273 39.130 0.00 0.00 0.00 4.02
713 826 4.405116 AAGTAACTACAACCACGGACAA 57.595 40.909 0.00 0.00 0.00 3.18
714 827 4.405116 AGTAACTACAACCACGGACAAA 57.595 40.909 0.00 0.00 0.00 2.83
715 828 4.964593 AGTAACTACAACCACGGACAAAT 58.035 39.130 0.00 0.00 0.00 2.32
716 829 6.100404 AGTAACTACAACCACGGACAAATA 57.900 37.500 0.00 0.00 0.00 1.40
717 830 6.704310 AGTAACTACAACCACGGACAAATAT 58.296 36.000 0.00 0.00 0.00 1.28
718 831 6.815142 AGTAACTACAACCACGGACAAATATC 59.185 38.462 0.00 0.00 0.00 1.63
719 832 5.155278 ACTACAACCACGGACAAATATCA 57.845 39.130 0.00 0.00 0.00 2.15
720 833 5.175859 ACTACAACCACGGACAAATATCAG 58.824 41.667 0.00 0.00 0.00 2.90
765 878 7.392766 TTGGTGATATGGAGTATTTGGAGAT 57.607 36.000 0.00 0.00 0.00 2.75
766 879 7.009179 TGGTGATATGGAGTATTTGGAGATC 57.991 40.000 0.00 0.00 0.00 2.75
804 917 6.606234 TTTATACGCCATAAATCGAGCAAA 57.394 33.333 0.00 0.00 34.77 3.68
978 1093 1.400846 TGCTAGTTTACTCGCCTCTCG 59.599 52.381 4.24 0.00 34.19 4.04
985 1100 0.177373 TACTCGCCTCTCGTCTGCTA 59.823 55.000 0.00 0.00 39.67 3.49
1325 1440 2.208132 AGAGGAAAGAGAGAGCACGA 57.792 50.000 0.00 0.00 0.00 4.35
1327 1442 2.894126 AGAGGAAAGAGAGAGCACGAAA 59.106 45.455 0.00 0.00 0.00 3.46
1328 1443 2.990514 GAGGAAAGAGAGAGCACGAAAC 59.009 50.000 0.00 0.00 0.00 2.78
1354 1470 4.414852 GTCGCTGTACGGATTTTACTGTA 58.585 43.478 5.68 0.00 43.89 2.74
1379 1495 2.876091 CTGCTGACAATCTGCCATTTG 58.124 47.619 5.40 0.00 40.10 2.32
1422 1538 1.029681 GCCGCCCTCCGATAAAAATT 58.970 50.000 0.00 0.00 40.02 1.82
1426 1545 3.250040 CCGCCCTCCGATAAAAATTGTAG 59.750 47.826 0.00 0.00 40.02 2.74
1434 1553 7.553044 CCTCCGATAAAAATTGTAGGAGTTCTT 59.447 37.037 12.49 0.00 40.41 2.52
1641 4825 7.446625 AGCACATTTCCAGTATCCATAAGATTC 59.553 37.037 0.00 0.00 36.33 2.52
1658 4842 9.442047 CATAAGATTCAGGTAGTTCAGACTTTT 57.558 33.333 0.00 0.00 37.33 2.27
1660 4844 7.067496 AGATTCAGGTAGTTCAGACTTTTCA 57.933 36.000 0.00 0.00 37.33 2.69
1693 4881 5.516696 GGTTTCTTCAGAAAAAGAAGCACAC 59.483 40.000 12.96 3.96 43.95 3.82
1703 4891 5.818136 AAAAGAAGCACACGCATGTATAT 57.182 34.783 0.00 0.00 42.27 0.86
1750 4965 3.061429 CGTGCGGTTGTTTGTTGAATTTT 59.939 39.130 0.00 0.00 0.00 1.82
1787 5003 4.872124 TCATCTGTTCATCTTCAATCGTGG 59.128 41.667 0.00 0.00 0.00 4.94
1790 5006 2.743664 TGTTCATCTTCAATCGTGGCAG 59.256 45.455 0.00 0.00 0.00 4.85
1795 5011 3.394674 TCTTCAATCGTGGCAGTACAA 57.605 42.857 0.00 0.00 0.00 2.41
1840 5060 9.793259 AAAATTACATCCAGATCCGTATACAAT 57.207 29.630 3.32 0.00 0.00 2.71
1845 5065 5.899120 TCCAGATCCGTATACAATCTAGC 57.101 43.478 14.31 0.00 0.00 3.42
1867 5087 1.068588 ACGACTACAAGCACTGAAGCA 59.931 47.619 0.00 0.00 36.85 3.91
1872 5092 1.081641 CAAGCACTGAAGCAAGCCG 60.082 57.895 0.00 0.00 36.85 5.52
1920 5140 4.056125 GCTGGAGCCGGGCAAAAC 62.056 66.667 23.09 8.49 34.31 2.43
1941 5161 3.255149 ACTTGTTGTACTAGACAGTCGGG 59.745 47.826 0.00 0.00 39.88 5.14
1945 5165 2.089980 TGTACTAGACAGTCGGGAAGC 58.910 52.381 0.00 0.00 36.14 3.86
1946 5166 2.089980 GTACTAGACAGTCGGGAAGCA 58.910 52.381 0.00 0.00 36.14 3.91
1947 5167 1.853963 ACTAGACAGTCGGGAAGCAT 58.146 50.000 0.00 0.00 0.00 3.79
1948 5168 1.751924 ACTAGACAGTCGGGAAGCATC 59.248 52.381 0.00 0.00 0.00 3.91
1971 5192 2.777114 TGCTAAGGCATCATAGGACCAA 59.223 45.455 0.00 0.00 44.28 3.67
1973 5194 2.332063 AAGGCATCATAGGACCAACG 57.668 50.000 0.00 0.00 0.00 4.10
1974 5195 0.469917 AGGCATCATAGGACCAACGG 59.530 55.000 0.00 0.00 0.00 4.44
1976 5197 1.072331 GGCATCATAGGACCAACGGAT 59.928 52.381 0.00 0.00 0.00 4.18
1991 5212 0.389817 CGGATCAGAACAGCAACCGA 60.390 55.000 0.00 0.00 41.09 4.69
1992 5213 1.740380 CGGATCAGAACAGCAACCGAT 60.740 52.381 0.00 0.00 41.09 4.18
1994 5215 2.350522 GATCAGAACAGCAACCGATGT 58.649 47.619 0.00 0.00 45.68 3.06
1995 5216 1.511850 TCAGAACAGCAACCGATGTG 58.488 50.000 0.00 0.00 42.04 3.21
2010 5231 1.661112 GATGTGGTTGAAGAGTAGCGC 59.339 52.381 0.00 0.00 0.00 5.92
2015 5236 2.197577 GGTTGAAGAGTAGCGCAGATC 58.802 52.381 11.47 3.59 0.00 2.75
2016 5237 2.417379 GGTTGAAGAGTAGCGCAGATCA 60.417 50.000 11.47 1.96 0.00 2.92
2045 5266 3.385433 TCCAACCTTAAGACAGACGAACA 59.615 43.478 3.36 0.00 0.00 3.18
2050 5271 5.952033 ACCTTAAGACAGACGAACATAGAC 58.048 41.667 3.36 0.00 0.00 2.59
2055 5276 3.501062 AGACAGACGAACATAGACGAACA 59.499 43.478 0.00 0.00 0.00 3.18
2062 5283 3.606777 CGAACATAGACGAACAACGACAT 59.393 43.478 0.00 0.00 45.77 3.06
2067 5288 3.577649 AGACGAACAACGACATGATCT 57.422 42.857 0.00 0.00 45.77 2.75
2068 5289 3.245797 AGACGAACAACGACATGATCTG 58.754 45.455 0.00 0.00 45.77 2.90
2071 5292 2.028523 CGAACAACGACATGATCTGAGC 59.971 50.000 0.00 0.00 45.77 4.26
2077 5298 3.201290 ACGACATGATCTGAGCAAATCC 58.799 45.455 0.00 0.00 0.00 3.01
2079 5300 3.813724 CGACATGATCTGAGCAAATCCAT 59.186 43.478 0.00 0.00 0.00 3.41
2083 5304 5.299531 ACATGATCTGAGCAAATCCATCAAG 59.700 40.000 0.00 0.00 32.64 3.02
2084 5305 5.106876 TGATCTGAGCAAATCCATCAAGA 57.893 39.130 0.00 0.00 0.00 3.02
2090 5311 5.258841 TGAGCAAATCCATCAAGAACAGAT 58.741 37.500 0.00 0.00 0.00 2.90
2115 5336 2.846371 GAGACACACCTCCACATGC 58.154 57.895 0.00 0.00 0.00 4.06
2118 5339 2.361610 CACACCTCCACATGCCCC 60.362 66.667 0.00 0.00 0.00 5.80
2119 5340 2.858476 ACACCTCCACATGCCCCA 60.858 61.111 0.00 0.00 0.00 4.96
2120 5341 2.440147 CACCTCCACATGCCCCAA 59.560 61.111 0.00 0.00 0.00 4.12
2122 5343 1.228862 ACCTCCACATGCCCCAAAC 60.229 57.895 0.00 0.00 0.00 2.93
2123 5344 2.342650 CCTCCACATGCCCCAAACG 61.343 63.158 0.00 0.00 0.00 3.60
2125 5346 0.680921 CTCCACATGCCCCAAACGAT 60.681 55.000 0.00 0.00 0.00 3.73
2126 5347 0.964860 TCCACATGCCCCAAACGATG 60.965 55.000 0.00 0.00 0.00 3.84
2147 5369 3.192212 TGCTAGACGCATCATCAGGATAG 59.808 47.826 0.00 0.00 45.47 2.08
2148 5370 3.441922 GCTAGACGCATCATCAGGATAGA 59.558 47.826 0.00 0.00 38.92 1.98
2179 5486 5.121811 CGATGAGAACCTGATTCCATCTTT 58.878 41.667 9.88 0.00 39.93 2.52
2181 5488 6.763135 CGATGAGAACCTGATTCCATCTTTAA 59.237 38.462 9.88 0.00 39.93 1.52
2187 5494 4.476479 ACCTGATTCCATCTTTAAGGAGCT 59.524 41.667 0.00 0.00 34.91 4.09
2192 5499 0.659957 CATCTTTAAGGAGCTGCCGC 59.340 55.000 0.00 0.00 43.43 6.53
2198 5505 2.032860 TAAGGAGCTGCCGCCATCTC 62.033 60.000 0.00 0.00 43.43 2.75
2207 5514 1.227089 CCGCCATCTCGTCTTCCTG 60.227 63.158 0.00 0.00 0.00 3.86
2210 5517 0.103937 GCCATCTCGTCTTCCTGAGG 59.896 60.000 0.00 0.00 33.00 3.86
2211 5518 0.103937 CCATCTCGTCTTCCTGAGGC 59.896 60.000 0.00 0.00 33.00 4.70
2212 5519 0.103937 CATCTCGTCTTCCTGAGGCC 59.896 60.000 0.00 0.00 33.00 5.19
2213 5520 1.045911 ATCTCGTCTTCCTGAGGCCC 61.046 60.000 0.00 0.00 33.00 5.80
2214 5521 1.684049 CTCGTCTTCCTGAGGCCCT 60.684 63.158 0.00 0.00 0.00 5.19
2215 5522 0.395862 CTCGTCTTCCTGAGGCCCTA 60.396 60.000 0.00 0.00 0.00 3.53
2216 5523 0.261991 TCGTCTTCCTGAGGCCCTAT 59.738 55.000 0.00 0.00 0.00 2.57
2220 5644 2.105806 CTTCCTGAGGCCCTATCCGC 62.106 65.000 0.00 0.00 0.00 5.54
2243 5667 1.001633 GGAGACACGGAAAACCTAGCA 59.998 52.381 0.00 0.00 0.00 3.49
2255 5679 6.042777 GGAAAACCTAGCATTTTCTTATGGC 58.957 40.000 20.84 7.71 42.92 4.40
2260 6212 4.889409 CCTAGCATTTTCTTATGGCAGGAA 59.111 41.667 0.00 0.00 0.00 3.36
2262 6214 4.347607 AGCATTTTCTTATGGCAGGAAGT 58.652 39.130 10.67 0.00 0.00 3.01
2265 6217 5.404946 CATTTTCTTATGGCAGGAAGTGTG 58.595 41.667 10.67 4.19 0.00 3.82
2368 6320 4.536364 AACGTGAACTGCATGCATATAC 57.464 40.909 22.97 16.11 36.99 1.47
2369 6321 3.797039 ACGTGAACTGCATGCATATACT 58.203 40.909 22.97 3.76 36.99 2.12
2370 6322 4.944048 ACGTGAACTGCATGCATATACTA 58.056 39.130 22.97 3.10 36.99 1.82
2371 6323 5.541845 ACGTGAACTGCATGCATATACTAT 58.458 37.500 22.97 2.38 36.99 2.12
2372 6324 6.687604 ACGTGAACTGCATGCATATACTATA 58.312 36.000 22.97 0.00 36.99 1.31
2373 6325 7.323420 ACGTGAACTGCATGCATATACTATAT 58.677 34.615 22.97 0.00 36.99 0.86
2374 6326 7.276438 ACGTGAACTGCATGCATATACTATATG 59.724 37.037 22.97 7.80 36.99 1.78
2419 6371 5.288952 TGTTTTCATTTCGTGATCGCGTATA 59.711 36.000 26.40 14.08 36.54 1.47
2420 6372 4.941727 TTCATTTCGTGATCGCGTATAC 57.058 40.909 26.40 2.52 36.54 1.47
2570 6522 1.736126 CTACGTCAAGGACTGCGACTA 59.264 52.381 0.00 0.00 0.00 2.59
2688 6640 1.678598 CCCGCTGGGTATTCGGTACA 61.679 60.000 5.56 0.00 41.46 2.90
2691 6643 1.067974 CGCTGGGTATTCGGTACATCA 59.932 52.381 0.00 0.14 34.87 3.07
2692 6644 2.288825 CGCTGGGTATTCGGTACATCAT 60.289 50.000 0.00 0.00 34.87 2.45
2740 8858 3.728864 CGAAATTCTGTACTGCATGGTGC 60.729 47.826 0.00 0.00 45.29 5.01
2763 8895 1.540267 ACATTTCTCTTGCTGCTGCTG 59.460 47.619 17.00 9.59 40.48 4.41
2764 8896 1.810755 CATTTCTCTTGCTGCTGCTGA 59.189 47.619 17.00 13.07 40.48 4.26
2765 8897 2.195741 TTTCTCTTGCTGCTGCTGAT 57.804 45.000 17.00 0.00 40.48 2.90
2773 8905 0.168348 GCTGCTGCTGATTCTGTGTG 59.832 55.000 10.92 0.00 36.03 3.82
2774 8906 1.804601 CTGCTGCTGATTCTGTGTGA 58.195 50.000 0.00 0.00 0.00 3.58
2777 8909 2.299867 TGCTGCTGATTCTGTGTGAGTA 59.700 45.455 0.00 0.00 0.00 2.59
2936 9071 8.614469 TCGCAATATATGAATGTCACCATTTA 57.386 30.769 0.00 0.00 41.37 1.40
2996 9210 8.553459 TTATAAGCTTCTGTCTCTTTTTCCTG 57.447 34.615 0.00 0.00 0.00 3.86
3101 9441 0.315251 TCTGTGTCAGCTCTTCCACG 59.685 55.000 0.00 0.00 0.00 4.94
3206 9552 5.615544 GCAGATAATCAATTGCGCTAACGAT 60.616 40.000 9.73 4.70 43.93 3.73
3247 9594 6.197168 TCTAGGTCTAACCGGGAAAAAGATA 58.803 40.000 6.32 0.00 44.90 1.98
3283 9630 8.230486 CACAAAGGTTGATAGAGATAACACAAC 58.770 37.037 0.00 0.00 37.47 3.32
3301 9654 4.082026 CACAACTGAAGGATCAAATTCCCC 60.082 45.833 0.00 0.00 36.35 4.81
3319 9977 9.547279 AAATTCCCCATATATATTTTCCTGGAC 57.453 33.333 0.00 0.00 0.00 4.02
3396 10054 2.163010 CACACTTTGCATCACCTGATCC 59.837 50.000 0.00 0.00 31.21 3.36
3397 10055 1.399440 CACTTTGCATCACCTGATCCG 59.601 52.381 0.00 0.00 31.21 4.18
3398 10056 1.003580 ACTTTGCATCACCTGATCCGT 59.996 47.619 0.00 0.00 31.21 4.69
3550 10208 3.221771 TCAAGGGATGGAAGTTTGTGTG 58.778 45.455 0.00 0.00 0.00 3.82
3595 10253 4.634012 TGCACCAGTAACCTATCAGTTT 57.366 40.909 0.00 0.00 0.00 2.66
3648 10344 2.040947 TCCTTGTATGAACCATGTGCCA 59.959 45.455 0.00 0.00 0.00 4.92
3913 10746 8.690680 AATCTACGTCATCTACAACTTCTTTC 57.309 34.615 0.00 0.00 0.00 2.62
3915 10748 7.528307 TCTACGTCATCTACAACTTCTTTCTC 58.472 38.462 0.00 0.00 0.00 2.87
4104 10940 9.859427 TCTCATCTATGCAATTTGTTTAAAAGG 57.141 29.630 0.00 0.00 0.00 3.11
4473 11323 3.136443 AGCTTGGTGTTGCAGCCTATATA 59.864 43.478 0.00 0.00 33.73 0.86
4569 11419 1.227438 CTTTGTCGTCGGTGTGGGT 60.227 57.895 0.00 0.00 0.00 4.51
4629 11479 4.142182 CCATTCATGGTGTAATGTTGTCCC 60.142 45.833 0.00 0.00 43.05 4.46
4695 11547 7.865706 AGATATGTAGGTTTGTTTTAGCTGG 57.134 36.000 0.00 0.00 0.00 4.85
4789 11641 5.586243 GCAGTAGATTGCTGAGGTTTAATCA 59.414 40.000 0.00 0.00 40.89 2.57
4843 11695 2.977914 TCATTCAGTCTTAGCAGGCAC 58.022 47.619 0.00 0.00 0.00 5.01
4844 11696 1.662629 CATTCAGTCTTAGCAGGCACG 59.337 52.381 0.00 0.00 0.00 5.34
4852 11704 2.147958 CTTAGCAGGCACGGTTTGTTA 58.852 47.619 0.00 0.00 0.00 2.41
4881 11733 3.515901 GAGGAGGAAATAGTGTCTGGTGT 59.484 47.826 0.00 0.00 0.00 4.16
4965 11848 7.884816 ACCCATAATTTATATCTTGTCGACG 57.115 36.000 11.62 0.00 0.00 5.12
4966 11849 7.439381 ACCCATAATTTATATCTTGTCGACGT 58.561 34.615 11.62 0.00 0.00 4.34
4967 11850 7.929785 ACCCATAATTTATATCTTGTCGACGTT 59.070 33.333 11.62 0.00 0.00 3.99
4968 11851 9.414295 CCCATAATTTATATCTTGTCGACGTTA 57.586 33.333 11.62 0.00 0.00 3.18
5068 11955 4.096382 TGAGTTTGTTGCTTCCAGAGAAAC 59.904 41.667 0.00 0.00 43.29 2.78
5108 11996 0.039798 GAACGACCGACTGTGCTGTA 60.040 55.000 0.00 0.00 0.00 2.74
5288 12177 1.134995 CATAGCTCACACTCGCAAGGA 60.135 52.381 0.00 0.00 38.47 3.36
5303 12192 0.888619 AAGGAGTGCTCGTTGATCGA 59.111 50.000 6.37 0.00 46.83 3.59
5342 12231 4.263243 GCAGGCTTCATATATCTCCCAACT 60.263 45.833 0.00 0.00 0.00 3.16
5375 12264 0.109039 GTGTCTCTGGCGAGGAAGAC 60.109 60.000 9.73 9.73 37.86 3.01
5430 12319 2.124278 GGGTCCTTCCGAATGCCC 60.124 66.667 0.00 0.00 37.00 5.36
5444 12333 1.913951 ATGCCCAGCGACTTCATGGA 61.914 55.000 0.00 0.00 36.09 3.41
5448 12337 0.803768 CCAGCGACTTCATGGACTCG 60.804 60.000 0.00 0.00 36.09 4.18
5520 12409 3.902162 GACGACGTACTTGCCGGCA 62.902 63.158 29.03 29.03 31.12 5.69
5548 12437 3.426568 GCAGCCGAAAGAAGCGCT 61.427 61.111 2.64 2.64 0.00 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.837538 TTTACAGAGTGCGGCGTTGC 61.838 55.000 9.37 0.00 0.00 4.17
7 8 0.584876 GTTTTACAGAGTGCGGCGTT 59.415 50.000 9.37 0.00 0.00 4.84
8 9 0.531090 TGTTTTACAGAGTGCGGCGT 60.531 50.000 9.37 0.00 0.00 5.68
13 14 6.743575 AATAGGACATGTTTTACAGAGTGC 57.256 37.500 0.00 0.00 31.78 4.40
14 15 9.383519 ACATAATAGGACATGTTTTACAGAGTG 57.616 33.333 0.00 0.00 31.32 3.51
15 16 9.383519 CACATAATAGGACATGTTTTACAGAGT 57.616 33.333 0.00 0.00 33.12 3.24
16 17 9.383519 ACACATAATAGGACATGTTTTACAGAG 57.616 33.333 0.00 0.00 33.12 3.35
17 18 9.733556 AACACATAATAGGACATGTTTTACAGA 57.266 29.630 0.00 0.00 33.12 3.41
18 19 9.988350 GAACACATAATAGGACATGTTTTACAG 57.012 33.333 0.00 0.00 33.12 2.74
41 42 1.594331 AAGAAGTCTTGCGTGGGAAC 58.406 50.000 0.00 0.00 34.38 3.62
107 108 5.125367 AGACCTTGTACCCTCAACTTTTT 57.875 39.130 0.00 0.00 0.00 1.94
149 150 1.253999 GCGACTACTAAACCGTGACG 58.746 55.000 0.00 0.00 0.00 4.35
150 151 1.253999 CGCGACTACTAAACCGTGAC 58.746 55.000 0.00 0.00 34.86 3.67
151 152 0.454957 GCGCGACTACTAAACCGTGA 60.455 55.000 12.10 0.00 34.86 4.35
152 153 0.455633 AGCGCGACTACTAAACCGTG 60.456 55.000 12.10 0.00 35.86 4.94
153 154 0.242017 AAGCGCGACTACTAAACCGT 59.758 50.000 12.10 0.00 0.00 4.83
155 156 1.706443 ACAAGCGCGACTACTAAACC 58.294 50.000 12.10 0.00 0.00 3.27
156 157 4.891277 TTTACAAGCGCGACTACTAAAC 57.109 40.909 12.10 0.00 0.00 2.01
157 158 5.865552 AGAATTTACAAGCGCGACTACTAAA 59.134 36.000 12.10 11.58 0.00 1.85
159 160 4.990257 AGAATTTACAAGCGCGACTACTA 58.010 39.130 12.10 0.00 0.00 1.82
161 162 3.858238 AGAGAATTTACAAGCGCGACTAC 59.142 43.478 12.10 0.00 0.00 2.73
163 164 2.668457 CAGAGAATTTACAAGCGCGACT 59.332 45.455 12.10 3.13 0.00 4.18
164 165 2.222819 CCAGAGAATTTACAAGCGCGAC 60.223 50.000 12.10 0.04 0.00 5.19
166 167 1.062587 CCCAGAGAATTTACAAGCGCG 59.937 52.381 0.00 0.00 0.00 6.86
169 170 3.956744 AGGTCCCAGAGAATTTACAAGC 58.043 45.455 0.00 0.00 0.00 4.01
170 171 5.189934 ACCTAGGTCCCAGAGAATTTACAAG 59.810 44.000 9.21 0.00 0.00 3.16
171 172 5.045869 CACCTAGGTCCCAGAGAATTTACAA 60.046 44.000 12.84 0.00 0.00 2.41
172 173 4.469945 CACCTAGGTCCCAGAGAATTTACA 59.530 45.833 12.84 0.00 0.00 2.41
173 174 4.141688 CCACCTAGGTCCCAGAGAATTTAC 60.142 50.000 12.84 0.00 0.00 2.01
174 175 4.037927 CCACCTAGGTCCCAGAGAATTTA 58.962 47.826 12.84 0.00 0.00 1.40
176 177 2.482494 CCACCTAGGTCCCAGAGAATT 58.518 52.381 12.84 0.00 0.00 2.17
178 179 3.711849 CCACCTAGGTCCCAGAGAA 57.288 57.895 12.84 0.00 0.00 2.87
188 189 6.248569 ACAACCAATAGATAACCACCTAGG 57.751 41.667 7.41 7.41 45.67 3.02
189 190 8.701895 TCTTACAACCAATAGATAACCACCTAG 58.298 37.037 0.00 0.00 0.00 3.02
192 193 7.228706 CCATCTTACAACCAATAGATAACCACC 59.771 40.741 0.00 0.00 0.00 4.61
196 197 6.998673 AGGCCATCTTACAACCAATAGATAAC 59.001 38.462 5.01 0.00 0.00 1.89
197 198 7.149202 AGGCCATCTTACAACCAATAGATAA 57.851 36.000 5.01 0.00 0.00 1.75
198 199 6.763715 AGGCCATCTTACAACCAATAGATA 57.236 37.500 5.01 0.00 0.00 1.98
199 200 5.653255 AGGCCATCTTACAACCAATAGAT 57.347 39.130 5.01 0.00 0.00 1.98
200 201 6.385759 TCTTAGGCCATCTTACAACCAATAGA 59.614 38.462 5.01 0.00 0.00 1.98
201 202 6.591935 TCTTAGGCCATCTTACAACCAATAG 58.408 40.000 5.01 0.00 0.00 1.73
203 204 5.450818 TCTTAGGCCATCTTACAACCAAT 57.549 39.130 5.01 0.00 0.00 3.16
204 205 4.919774 TCTTAGGCCATCTTACAACCAA 57.080 40.909 5.01 0.00 0.00 3.67
205 206 4.919774 TTCTTAGGCCATCTTACAACCA 57.080 40.909 5.01 0.00 0.00 3.67
206 207 6.017026 GCTATTTCTTAGGCCATCTTACAACC 60.017 42.308 5.01 0.00 0.00 3.77
207 208 6.542370 TGCTATTTCTTAGGCCATCTTACAAC 59.458 38.462 5.01 0.00 0.00 3.32
208 209 6.658849 TGCTATTTCTTAGGCCATCTTACAA 58.341 36.000 5.01 0.00 0.00 2.41
209 210 6.247229 TGCTATTTCTTAGGCCATCTTACA 57.753 37.500 5.01 0.00 0.00 2.41
210 211 7.445402 TGAATGCTATTTCTTAGGCCATCTTAC 59.555 37.037 5.01 0.00 0.00 2.34
211 212 7.445402 GTGAATGCTATTTCTTAGGCCATCTTA 59.555 37.037 5.01 0.00 0.00 2.10
212 213 6.264067 GTGAATGCTATTTCTTAGGCCATCTT 59.736 38.462 5.01 0.00 0.00 2.40
215 216 5.300286 GTGTGAATGCTATTTCTTAGGCCAT 59.700 40.000 5.01 0.00 0.00 4.40
217 218 4.884164 AGTGTGAATGCTATTTCTTAGGCC 59.116 41.667 0.00 0.00 0.00 5.19
218 219 6.292381 CGTAGTGTGAATGCTATTTCTTAGGC 60.292 42.308 0.00 0.00 0.00 3.93
219 220 6.292381 GCGTAGTGTGAATGCTATTTCTTAGG 60.292 42.308 0.00 0.00 0.00 2.69
220 221 6.255670 TGCGTAGTGTGAATGCTATTTCTTAG 59.744 38.462 0.00 0.00 0.00 2.18
222 223 4.935205 TGCGTAGTGTGAATGCTATTTCTT 59.065 37.500 0.00 0.00 0.00 2.52
224 225 4.857871 TGCGTAGTGTGAATGCTATTTC 57.142 40.909 0.00 0.00 0.00 2.17
225 226 4.496341 GCATGCGTAGTGTGAATGCTATTT 60.496 41.667 0.00 0.00 40.34 1.40
226 227 3.002656 GCATGCGTAGTGTGAATGCTATT 59.997 43.478 0.00 0.00 40.34 1.73
228 229 1.933181 GCATGCGTAGTGTGAATGCTA 59.067 47.619 0.00 0.00 40.34 3.49
229 230 0.729116 GCATGCGTAGTGTGAATGCT 59.271 50.000 0.00 0.00 40.34 3.79
230 231 0.447406 TGCATGCGTAGTGTGAATGC 59.553 50.000 14.09 0.00 43.08 3.56
231 232 4.737353 ATATGCATGCGTAGTGTGAATG 57.263 40.909 23.20 0.00 0.00 2.67
232 233 5.783111 TCTATATGCATGCGTAGTGTGAAT 58.217 37.500 23.20 9.61 0.00 2.57
233 234 5.195001 TCTATATGCATGCGTAGTGTGAA 57.805 39.130 23.20 2.26 0.00 3.18
235 236 5.905480 TTTCTATATGCATGCGTAGTGTG 57.095 39.130 23.20 13.27 0.00 3.82
236 237 7.378966 ACTATTTCTATATGCATGCGTAGTGT 58.621 34.615 23.20 10.69 0.00 3.55
237 238 7.818493 ACTATTTCTATATGCATGCGTAGTG 57.182 36.000 23.20 17.51 0.00 2.74
241 242 9.399403 CGATATACTATTTCTATATGCATGCGT 57.601 33.333 18.07 18.07 0.00 5.24
242 243 8.854312 CCGATATACTATTTCTATATGCATGCG 58.146 37.037 14.09 0.00 0.00 4.73
243 244 9.914131 TCCGATATACTATTTCTATATGCATGC 57.086 33.333 11.82 11.82 0.00 4.06
264 265 9.790344 TTTCTAGTAGCTAATTAGTACTCCGAT 57.210 33.333 21.10 8.68 0.00 4.18
277 278 8.282592 CGCATTGCATTTATTTCTAGTAGCTAA 58.717 33.333 9.69 0.00 0.00 3.09
278 279 7.441157 ACGCATTGCATTTATTTCTAGTAGCTA 59.559 33.333 9.69 0.00 0.00 3.32
279 280 6.260936 ACGCATTGCATTTATTTCTAGTAGCT 59.739 34.615 9.69 0.00 0.00 3.32
280 281 6.430451 ACGCATTGCATTTATTTCTAGTAGC 58.570 36.000 9.69 0.00 0.00 3.58
282 283 6.765989 AGGACGCATTGCATTTATTTCTAGTA 59.234 34.615 9.69 0.00 0.00 1.82
283 284 5.590259 AGGACGCATTGCATTTATTTCTAGT 59.410 36.000 9.69 0.00 0.00 2.57
286 287 4.989279 AGGACGCATTGCATTTATTTCT 57.011 36.364 9.69 0.00 0.00 2.52
287 288 6.019881 GGTTTAGGACGCATTGCATTTATTTC 60.020 38.462 9.69 0.00 0.00 2.17
289 290 5.127031 AGGTTTAGGACGCATTGCATTTATT 59.873 36.000 9.69 0.00 0.00 1.40
290 291 4.644685 AGGTTTAGGACGCATTGCATTTAT 59.355 37.500 9.69 0.00 0.00 1.40
291 292 4.013728 AGGTTTAGGACGCATTGCATTTA 58.986 39.130 9.69 0.00 0.00 1.40
292 293 2.825532 AGGTTTAGGACGCATTGCATTT 59.174 40.909 9.69 0.00 0.00 2.32
293 294 2.446435 AGGTTTAGGACGCATTGCATT 58.554 42.857 9.69 0.00 0.00 3.56
294 295 2.128771 AGGTTTAGGACGCATTGCAT 57.871 45.000 9.69 0.00 0.00 3.96
296 297 1.539827 ACAAGGTTTAGGACGCATTGC 59.460 47.619 0.00 0.00 0.00 3.56
297 298 3.074412 AGACAAGGTTTAGGACGCATTG 58.926 45.455 0.00 0.00 0.00 2.82
298 299 3.418684 AGACAAGGTTTAGGACGCATT 57.581 42.857 0.00 0.00 0.00 3.56
299 300 4.755266 ATAGACAAGGTTTAGGACGCAT 57.245 40.909 0.00 0.00 0.00 4.73
300 301 4.546829 AATAGACAAGGTTTAGGACGCA 57.453 40.909 0.00 0.00 0.00 5.24
301 302 5.465724 CCATAATAGACAAGGTTTAGGACGC 59.534 44.000 0.00 0.00 0.00 5.19
302 303 6.812998 TCCATAATAGACAAGGTTTAGGACG 58.187 40.000 0.00 0.00 0.00 4.79
304 305 7.767198 CGTTTCCATAATAGACAAGGTTTAGGA 59.233 37.037 0.00 0.00 0.00 2.94
305 306 7.466860 GCGTTTCCATAATAGACAAGGTTTAGG 60.467 40.741 0.00 0.00 0.00 2.69
306 307 7.065324 TGCGTTTCCATAATAGACAAGGTTTAG 59.935 37.037 0.00 0.00 0.00 1.85
307 308 6.879993 TGCGTTTCCATAATAGACAAGGTTTA 59.120 34.615 0.00 0.00 0.00 2.01
308 309 5.708230 TGCGTTTCCATAATAGACAAGGTTT 59.292 36.000 0.00 0.00 0.00 3.27
310 311 4.839121 TGCGTTTCCATAATAGACAAGGT 58.161 39.130 0.00 0.00 0.00 3.50
311 312 4.273480 CCTGCGTTTCCATAATAGACAAGG 59.727 45.833 0.00 0.00 0.00 3.61
312 313 4.260784 GCCTGCGTTTCCATAATAGACAAG 60.261 45.833 0.00 0.00 0.00 3.16
314 315 3.202906 GCCTGCGTTTCCATAATAGACA 58.797 45.455 0.00 0.00 0.00 3.41
315 316 3.202906 TGCCTGCGTTTCCATAATAGAC 58.797 45.455 0.00 0.00 0.00 2.59
316 317 3.552132 TGCCTGCGTTTCCATAATAGA 57.448 42.857 0.00 0.00 0.00 1.98
317 318 4.630894 TTTGCCTGCGTTTCCATAATAG 57.369 40.909 0.00 0.00 0.00 1.73
318 319 5.590530 AATTTGCCTGCGTTTCCATAATA 57.409 34.783 0.00 0.00 0.00 0.98
320 321 3.951775 AATTTGCCTGCGTTTCCATAA 57.048 38.095 0.00 0.00 0.00 1.90
322 323 2.837532 AAATTTGCCTGCGTTTCCAT 57.162 40.000 0.00 0.00 0.00 3.41
323 324 3.068873 AGTTAAATTTGCCTGCGTTTCCA 59.931 39.130 0.00 0.00 0.00 3.53
325 326 4.048504 ACAGTTAAATTTGCCTGCGTTTC 58.951 39.130 15.10 0.00 0.00 2.78
326 327 3.801594 CACAGTTAAATTTGCCTGCGTTT 59.198 39.130 15.10 0.00 0.00 3.60
327 328 3.380142 CACAGTTAAATTTGCCTGCGTT 58.620 40.909 15.10 0.00 0.00 4.84
328 329 2.862140 GCACAGTTAAATTTGCCTGCGT 60.862 45.455 15.10 0.00 0.00 5.24
329 330 1.720852 GCACAGTTAAATTTGCCTGCG 59.279 47.619 15.10 9.47 0.00 5.18
334 335 6.923508 AGTTTAGAAGGCACAGTTAAATTTGC 59.076 34.615 5.51 5.51 0.00 3.68
335 336 7.920682 ACAGTTTAGAAGGCACAGTTAAATTTG 59.079 33.333 0.00 0.00 0.00 2.32
338 339 6.770785 TCACAGTTTAGAAGGCACAGTTAAAT 59.229 34.615 0.00 0.00 0.00 1.40
339 340 6.037830 GTCACAGTTTAGAAGGCACAGTTAAA 59.962 38.462 0.00 0.00 0.00 1.52
342 343 3.877508 GTCACAGTTTAGAAGGCACAGTT 59.122 43.478 0.00 0.00 0.00 3.16
343 344 3.467803 GTCACAGTTTAGAAGGCACAGT 58.532 45.455 0.00 0.00 0.00 3.55
344 345 2.476619 CGTCACAGTTTAGAAGGCACAG 59.523 50.000 0.00 0.00 0.00 3.66
345 346 2.479837 CGTCACAGTTTAGAAGGCACA 58.520 47.619 0.00 0.00 0.00 4.57
346 347 1.798813 CCGTCACAGTTTAGAAGGCAC 59.201 52.381 0.00 0.00 0.00 5.01
347 348 1.689813 TCCGTCACAGTTTAGAAGGCA 59.310 47.619 0.00 0.00 34.05 4.75
348 349 2.338500 CTCCGTCACAGTTTAGAAGGC 58.662 52.381 0.00 0.00 34.05 4.35
350 351 2.561419 TCCCTCCGTCACAGTTTAGAAG 59.439 50.000 0.00 0.00 0.00 2.85
353 354 1.893801 ACTCCCTCCGTCACAGTTTAG 59.106 52.381 0.00 0.00 0.00 1.85
354 355 2.005370 ACTCCCTCCGTCACAGTTTA 57.995 50.000 0.00 0.00 0.00 2.01
356 357 1.893801 CTTACTCCCTCCGTCACAGTT 59.106 52.381 0.00 0.00 0.00 3.16
360 361 1.542492 TGTCTTACTCCCTCCGTCAC 58.458 55.000 0.00 0.00 0.00 3.67
361 362 2.297698 TTGTCTTACTCCCTCCGTCA 57.702 50.000 0.00 0.00 0.00 4.35
362 363 3.889520 ATTTGTCTTACTCCCTCCGTC 57.110 47.619 0.00 0.00 0.00 4.79
364 365 4.202245 TCAATTTGTCTTACTCCCTCCG 57.798 45.455 0.00 0.00 0.00 4.63
366 367 5.313712 TGGTTCAATTTGTCTTACTCCCTC 58.686 41.667 0.00 0.00 0.00 4.30
367 368 5.319043 TGGTTCAATTTGTCTTACTCCCT 57.681 39.130 0.00 0.00 0.00 4.20
368 369 5.622233 GCATGGTTCAATTTGTCTTACTCCC 60.622 44.000 0.00 0.00 0.00 4.30
369 370 5.402398 GCATGGTTCAATTTGTCTTACTCC 58.598 41.667 0.00 0.00 0.00 3.85
371 372 4.832266 TGGCATGGTTCAATTTGTCTTACT 59.168 37.500 0.00 0.00 0.00 2.24
372 373 5.132897 TGGCATGGTTCAATTTGTCTTAC 57.867 39.130 0.00 0.00 0.00 2.34
373 374 5.999205 ATGGCATGGTTCAATTTGTCTTA 57.001 34.783 0.00 0.00 0.00 2.10
569 667 3.194005 ACGAGGCTATATTGGTTGTGG 57.806 47.619 0.00 0.00 0.00 4.17
694 807 6.591062 TGATATTTGTCCGTGGTTGTAGTTAC 59.409 38.462 0.00 0.00 0.00 2.50
697 810 5.155278 TGATATTTGTCCGTGGTTGTAGT 57.845 39.130 0.00 0.00 0.00 2.73
699 812 3.936453 GCTGATATTTGTCCGTGGTTGTA 59.064 43.478 0.00 0.00 0.00 2.41
700 813 2.747446 GCTGATATTTGTCCGTGGTTGT 59.253 45.455 0.00 0.00 0.00 3.32
701 814 2.746904 TGCTGATATTTGTCCGTGGTTG 59.253 45.455 0.00 0.00 0.00 3.77
702 815 3.009723 CTGCTGATATTTGTCCGTGGTT 58.990 45.455 0.00 0.00 0.00 3.67
704 817 1.331756 GCTGCTGATATTTGTCCGTGG 59.668 52.381 0.00 0.00 0.00 4.94
705 818 2.009051 TGCTGCTGATATTTGTCCGTG 58.991 47.619 0.00 0.00 0.00 4.94
706 819 2.283298 CTGCTGCTGATATTTGTCCGT 58.717 47.619 0.00 0.00 0.00 4.69
707 820 2.283298 ACTGCTGCTGATATTTGTCCG 58.717 47.619 13.69 0.00 0.00 4.79
708 821 3.273434 TGACTGCTGCTGATATTTGTCC 58.727 45.455 13.69 0.00 0.00 4.02
709 822 3.242673 GCTGACTGCTGCTGATATTTGTC 60.243 47.826 13.69 0.00 38.95 3.18
710 823 2.681848 GCTGACTGCTGCTGATATTTGT 59.318 45.455 13.69 0.00 38.95 2.83
711 824 2.286242 CGCTGACTGCTGCTGATATTTG 60.286 50.000 13.69 0.00 40.11 2.32
712 825 1.938577 CGCTGACTGCTGCTGATATTT 59.061 47.619 13.69 0.00 40.11 1.40
713 826 1.579698 CGCTGACTGCTGCTGATATT 58.420 50.000 13.69 0.00 40.11 1.28
714 827 0.879400 GCGCTGACTGCTGCTGATAT 60.879 55.000 13.69 0.00 40.11 1.63
715 828 1.520120 GCGCTGACTGCTGCTGATA 60.520 57.895 13.69 1.02 40.11 2.15
716 829 2.818714 GCGCTGACTGCTGCTGAT 60.819 61.111 13.69 0.00 40.11 2.90
717 830 3.812865 TTGCGCTGACTGCTGCTGA 62.813 57.895 9.73 7.63 40.17 4.26
718 831 2.579241 GATTGCGCTGACTGCTGCTG 62.579 60.000 9.73 4.89 40.17 4.41
719 832 2.359602 ATTGCGCTGACTGCTGCT 60.360 55.556 9.73 1.85 40.17 4.24
720 833 2.099831 GATTGCGCTGACTGCTGC 59.900 61.111 9.73 11.94 40.11 5.25
765 878 7.232737 TGGCGTATAAAAGATAGAGATTGGAGA 59.767 37.037 0.00 0.00 0.00 3.71
766 879 7.378966 TGGCGTATAAAAGATAGAGATTGGAG 58.621 38.462 0.00 0.00 0.00 3.86
804 917 1.076014 CGGGTAGGGGTGGCTTTTT 59.924 57.895 0.00 0.00 0.00 1.94
834 948 3.418744 GAGAAGCGAGAGGGACGGC 62.419 68.421 0.00 0.00 0.00 5.68
944 1059 1.293924 CTAGCAGCGACAAGAATGGG 58.706 55.000 0.00 0.00 0.00 4.00
978 1093 2.022129 AGCACGCACGTTAGCAGAC 61.022 57.895 8.01 0.00 0.00 3.51
985 1100 2.390599 CCATAGCAGCACGCACGTT 61.391 57.895 0.00 0.00 46.13 3.99
1236 1351 1.685765 CTGGACGAGGACCATGGGA 60.686 63.158 18.09 0.00 36.79 4.37
1325 1440 1.662446 CCGTACAGCGACGTGGTTT 60.662 57.895 0.00 0.00 44.77 3.27
1327 1442 1.870055 AATCCGTACAGCGACGTGGT 61.870 55.000 0.00 0.00 44.77 4.16
1328 1443 0.734942 AAATCCGTACAGCGACGTGG 60.735 55.000 0.00 0.00 44.77 4.94
1354 1470 0.815734 GCAGATTGTCAGCAGCCAAT 59.184 50.000 0.00 0.00 34.11 3.16
1379 1495 1.336240 ACAGCGAAAGATTTTGCCAGC 60.336 47.619 12.82 0.00 46.43 4.85
1385 1501 3.758300 CGGCATTACAGCGAAAGATTTT 58.242 40.909 0.00 0.00 34.64 1.82
1456 1581 3.391049 GACTTCTTGTAAACCTGCGAGT 58.609 45.455 0.00 0.00 0.00 4.18
1641 4825 7.360101 CGGTAAATGAAAAGTCTGAACTACCTG 60.360 40.741 0.00 0.00 33.48 4.00
1658 4842 4.963373 TCTGAAGAAACCACGGTAAATGA 58.037 39.130 0.00 0.00 0.00 2.57
1660 4844 6.702716 TTTTCTGAAGAAACCACGGTAAAT 57.297 33.333 4.99 0.00 43.01 1.40
1693 4881 3.917985 TGCTAAGTGCGTATATACATGCG 59.082 43.478 13.22 0.21 46.63 4.73
1703 4891 7.303261 GTGTACTGATATATGCTAAGTGCGTA 58.697 38.462 0.00 0.00 45.94 4.42
1765 4981 4.495349 GCCACGATTGAAGATGAACAGATG 60.495 45.833 0.00 0.00 0.00 2.90
1787 5003 5.840940 ATTTCTAGTGTTCGTTGTACTGC 57.159 39.130 0.00 0.00 0.00 4.40
1824 5044 4.395231 TCGCTAGATTGTATACGGATCTGG 59.605 45.833 22.31 20.85 32.68 3.86
1838 5058 2.422479 TGCTTGTAGTCGTCGCTAGATT 59.578 45.455 0.00 0.00 0.00 2.40
1840 5060 1.129998 GTGCTTGTAGTCGTCGCTAGA 59.870 52.381 0.00 0.00 0.00 2.43
1845 5065 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
1884 5104 4.458829 AGGGAGGGGCGATGACGA 62.459 66.667 0.00 0.00 42.66 4.20
1904 5124 1.903404 AAGTTTTGCCCGGCTCCAG 60.903 57.895 11.61 0.00 0.00 3.86
1911 5131 3.810941 TCTAGTACAACAAGTTTTGCCCG 59.189 43.478 0.00 0.00 0.00 6.13
1913 5133 5.296035 ACTGTCTAGTACAACAAGTTTTGCC 59.704 40.000 0.00 0.00 37.74 4.52
1920 5140 3.504906 TCCCGACTGTCTAGTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
1957 5178 2.224281 TGATCCGTTGGTCCTATGATGC 60.224 50.000 0.00 0.00 0.00 3.91
1959 5180 3.576861 TCTGATCCGTTGGTCCTATGAT 58.423 45.455 0.00 0.00 0.00 2.45
1971 5192 0.670546 CGGTTGCTGTTCTGATCCGT 60.671 55.000 0.00 0.00 33.20 4.69
1973 5194 1.667724 CATCGGTTGCTGTTCTGATCC 59.332 52.381 0.00 0.00 0.00 3.36
1974 5195 2.094894 CACATCGGTTGCTGTTCTGATC 59.905 50.000 0.00 0.00 0.00 2.92
1976 5197 1.511850 CACATCGGTTGCTGTTCTGA 58.488 50.000 0.00 0.00 0.00 3.27
1991 5212 1.001974 TGCGCTACTCTTCAACCACAT 59.998 47.619 9.73 0.00 0.00 3.21
1992 5213 0.391228 TGCGCTACTCTTCAACCACA 59.609 50.000 9.73 0.00 0.00 4.17
1994 5215 0.966179 TCTGCGCTACTCTTCAACCA 59.034 50.000 9.73 0.00 0.00 3.67
1995 5216 2.197577 GATCTGCGCTACTCTTCAACC 58.802 52.381 9.73 0.00 0.00 3.77
2015 5236 5.046304 TCTGTCTTAAGGTTGGATCCTTCTG 60.046 44.000 14.23 0.00 45.35 3.02
2016 5237 5.046231 GTCTGTCTTAAGGTTGGATCCTTCT 60.046 44.000 14.23 4.81 45.35 2.85
2029 5250 5.866075 TCGTCTATGTTCGTCTGTCTTAAG 58.134 41.667 0.00 0.00 0.00 1.85
2031 5252 5.179929 TGTTCGTCTATGTTCGTCTGTCTTA 59.820 40.000 0.00 0.00 0.00 2.10
2038 5259 3.057350 GTCGTTGTTCGTCTATGTTCGTC 59.943 47.826 0.00 0.00 40.80 4.20
2045 5266 5.037385 CAGATCATGTCGTTGTTCGTCTAT 58.963 41.667 0.00 0.00 40.80 1.98
2050 5271 2.028523 GCTCAGATCATGTCGTTGTTCG 59.971 50.000 0.00 0.00 41.41 3.95
2055 5276 3.624861 GGATTTGCTCAGATCATGTCGTT 59.375 43.478 0.00 0.00 0.00 3.85
2062 5283 5.106876 TCTTGATGGATTTGCTCAGATCA 57.893 39.130 0.00 0.00 0.00 2.92
2067 5288 4.654915 TCTGTTCTTGATGGATTTGCTCA 58.345 39.130 0.00 0.00 0.00 4.26
2068 5289 5.221009 GGATCTGTTCTTGATGGATTTGCTC 60.221 44.000 0.00 0.00 0.00 4.26
2071 5292 4.497006 GCGGATCTGTTCTTGATGGATTTG 60.497 45.833 2.89 0.00 0.00 2.32
2077 5298 0.933097 CGGCGGATCTGTTCTTGATG 59.067 55.000 0.00 0.00 0.00 3.07
2079 5300 1.218047 CCGGCGGATCTGTTCTTGA 59.782 57.895 24.41 0.00 0.00 3.02
2083 5304 1.227002 GTCTCCGGCGGATCTGTTC 60.227 63.158 31.23 12.10 0.00 3.18
2084 5305 1.982395 TGTCTCCGGCGGATCTGTT 60.982 57.895 31.23 0.00 0.00 3.16
2090 5311 4.988716 AGGTGTGTCTCCGGCGGA 62.989 66.667 29.14 29.14 0.00 5.54
2115 5336 2.677971 CGTCTAGCATCGTTTGGGG 58.322 57.895 0.00 0.00 0.00 4.96
2136 5358 3.145286 CGCTCAGTCTCTATCCTGATGA 58.855 50.000 0.00 0.00 37.11 2.92
2139 5361 3.145286 CATCGCTCAGTCTCTATCCTGA 58.855 50.000 0.00 0.00 36.35 3.86
2141 5363 3.072330 TCTCATCGCTCAGTCTCTATCCT 59.928 47.826 0.00 0.00 0.00 3.24
2147 5369 1.748493 AGGTTCTCATCGCTCAGTCTC 59.252 52.381 0.00 0.00 0.00 3.36
2148 5370 1.476085 CAGGTTCTCATCGCTCAGTCT 59.524 52.381 0.00 0.00 0.00 3.24
2179 5486 2.032860 GAGATGGCGGCAGCTCCTTA 62.033 60.000 38.34 4.78 44.37 2.69
2181 5488 3.859414 GAGATGGCGGCAGCTCCT 61.859 66.667 38.34 22.28 44.37 3.69
2187 5494 2.184322 GAAGACGAGATGGCGGCA 59.816 61.111 16.34 16.34 43.13 5.69
2192 5499 0.103937 GCCTCAGGAAGACGAGATGG 59.896 60.000 0.00 0.00 0.00 3.51
2198 5505 0.676736 GATAGGGCCTCAGGAAGACG 59.323 60.000 10.74 0.00 0.00 4.18
2212 5519 2.520982 TGTCTCCCGGCGGATAGG 60.521 66.667 30.79 11.04 37.60 2.57
2213 5520 2.728817 GTGTCTCCCGGCGGATAG 59.271 66.667 30.79 23.56 37.60 2.08
2214 5521 3.214123 CGTGTCTCCCGGCGGATA 61.214 66.667 30.79 14.48 37.60 2.59
2220 5644 1.670083 GGTTTTCCGTGTCTCCCGG 60.670 63.158 0.00 0.00 46.83 5.73
2231 5655 6.042777 GCCATAAGAAAATGCTAGGTTTTCC 58.957 40.000 7.49 0.00 43.29 3.13
2243 5667 4.082026 GCACACTTCCTGCCATAAGAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
2255 5679 1.069636 GCTCTTTTCGCACACTTCCTG 60.070 52.381 0.00 0.00 0.00 3.86
2332 6284 3.446799 TCACGTTAATGGCCGTATGTAC 58.553 45.455 0.00 0.00 35.16 2.90
2341 6293 2.518949 CATGCAGTTCACGTTAATGGC 58.481 47.619 0.00 0.00 0.00 4.40
2375 6327 2.602257 TCAGGATCCGTGCATAACTG 57.398 50.000 5.98 0.00 0.00 3.16
2376 6328 2.435805 ACATCAGGATCCGTGCATAACT 59.564 45.455 5.98 0.00 0.00 2.24
2377 6329 2.838736 ACATCAGGATCCGTGCATAAC 58.161 47.619 5.98 0.00 0.00 1.89
2378 6330 3.558931 AACATCAGGATCCGTGCATAA 57.441 42.857 5.98 0.00 0.00 1.90
2388 6340 6.457392 CGATCACGAAATGAAAACATCAGGAT 60.457 38.462 0.00 0.00 41.93 3.24
2419 6371 4.320456 CAGCTCCTGCACCGTGGT 62.320 66.667 0.00 0.00 42.74 4.16
2444 6396 4.838152 CCCACCGATGGCACTCCG 62.838 72.222 0.00 0.00 45.76 4.63
2454 6406 4.323477 CCCTTGTTCGCCCACCGA 62.323 66.667 0.00 0.00 45.77 4.69
2610 6562 3.781307 ATGGCGCGGCTCAGGTAA 61.781 61.111 33.23 11.95 0.00 2.85
2740 8858 2.414293 GCAGCAGCAAGAGAAATGTCAG 60.414 50.000 0.00 0.00 41.58 3.51
2763 8895 4.560128 TCACTGCTTACTCACACAGAATC 58.440 43.478 0.00 0.00 34.25 2.52
2764 8896 4.607293 TCACTGCTTACTCACACAGAAT 57.393 40.909 0.00 0.00 34.25 2.40
2765 8897 4.400529 TTCACTGCTTACTCACACAGAA 57.599 40.909 0.00 0.00 34.25 3.02
2936 9071 1.143684 ACACAGAGGCCTCACAAATGT 59.856 47.619 33.90 24.73 0.00 2.71
2996 9210 8.301002 TGTTTGCCTTTTCCTATTTATGTACAC 58.699 33.333 0.00 0.00 0.00 2.90
3101 9441 6.150641 GTCCCTTGGTTTCCTAGTATTGTTTC 59.849 42.308 0.00 0.00 0.00 2.78
3206 9552 4.019321 ACCTAGAGCTGCCTAACATCAAAA 60.019 41.667 0.00 0.00 0.00 2.44
3270 9617 6.611613 TGATCCTTCAGTTGTGTTATCTCT 57.388 37.500 0.00 0.00 0.00 3.10
3348 10006 1.753073 GGCTGCTGCTAAAATCCATGT 59.247 47.619 15.64 0.00 39.59 3.21
3396 10054 7.803189 ACAAGTATTTTGCATGTTAAGAAGACG 59.197 33.333 0.00 0.00 0.00 4.18
3397 10055 9.463443 AACAAGTATTTTGCATGTTAAGAAGAC 57.537 29.630 0.00 0.00 32.81 3.01
3424 10082 0.250124 CACACCAGCGGTTCCTGTTA 60.250 55.000 0.00 0.00 31.02 2.41
3550 10208 1.204146 TACCCTGAGATCACCAAGGC 58.796 55.000 0.00 0.00 0.00 4.35
3595 10253 2.030371 TGCAGTGGTTTTCTTGCATGA 58.970 42.857 0.00 0.00 0.00 3.07
3648 10344 9.930693 TTAACCTGAAACAACATTTACAAGTTT 57.069 25.926 0.00 0.00 35.33 2.66
3913 10746 0.504384 CCGATTATCTTGCGCACGAG 59.496 55.000 21.65 12.68 0.00 4.18
3915 10748 1.564622 CCCGATTATCTTGCGCACG 59.435 57.895 11.12 9.20 0.00 5.34
4104 10940 6.051179 AGTTAGGAGGTTTAGGTTCATCAC 57.949 41.667 0.00 0.00 0.00 3.06
4384 11232 5.311265 AGTTGAGAGATGCACATGAGAAAA 58.689 37.500 0.00 0.00 0.00 2.29
4473 11323 7.839680 AAGGTCATAACTTCCACAAAAGAAT 57.160 32.000 0.00 0.00 0.00 2.40
4522 11372 5.503683 CGATGGATTGCATGAAGAGAAAGAC 60.504 44.000 0.00 0.00 0.00 3.01
4629 11479 4.702392 GTGCTGTTACACTGAATCTTTCG 58.298 43.478 0.00 0.00 37.58 3.46
4677 11527 4.155462 GCCTACCAGCTAAAACAAACCTAC 59.845 45.833 0.00 0.00 0.00 3.18
4695 11547 0.449388 GCTTCACAGCACATGCCTAC 59.551 55.000 0.00 0.00 46.49 3.18
4789 11641 8.466798 CCCTTATGTTATTCTTTTCGGACAAAT 58.533 33.333 0.00 0.00 0.00 2.32
4843 11695 3.270877 CTCCTCTTCCCATAACAAACCG 58.729 50.000 0.00 0.00 0.00 4.44
4844 11696 3.265995 TCCTCCTCTTCCCATAACAAACC 59.734 47.826 0.00 0.00 0.00 3.27
4852 11704 4.375313 ACACTATTTCCTCCTCTTCCCAT 58.625 43.478 0.00 0.00 0.00 4.00
4881 11733 0.843309 TCAGGTGGGCAAAGTTGAGA 59.157 50.000 0.00 0.00 0.00 3.27
4958 11841 1.979897 TATTGCGCTTAACGTCGACA 58.020 45.000 17.16 0.00 46.11 4.35
4959 11842 3.079329 GTTTATTGCGCTTAACGTCGAC 58.921 45.455 9.73 5.18 46.11 4.20
4960 11843 2.730404 TGTTTATTGCGCTTAACGTCGA 59.270 40.909 9.73 0.00 46.11 4.20
4962 11845 5.219951 CCAAATGTTTATTGCGCTTAACGTC 60.220 40.000 9.73 1.75 46.11 4.34
4963 11846 4.619336 CCAAATGTTTATTGCGCTTAACGT 59.381 37.500 9.73 6.20 46.11 3.99
4965 11848 5.164954 TCCCAAATGTTTATTGCGCTTAAC 58.835 37.500 9.73 8.16 0.00 2.01
4966 11849 5.392767 TCCCAAATGTTTATTGCGCTTAA 57.607 34.783 9.73 3.96 0.00 1.85
4967 11850 5.392767 TTCCCAAATGTTTATTGCGCTTA 57.607 34.783 9.73 0.00 0.00 3.09
4968 11851 3.951775 TCCCAAATGTTTATTGCGCTT 57.048 38.095 9.73 0.00 0.00 4.68
4969 11852 3.951775 TTCCCAAATGTTTATTGCGCT 57.048 38.095 9.73 0.00 0.00 5.92
4970 11853 3.993736 ACTTTCCCAAATGTTTATTGCGC 59.006 39.130 0.00 0.00 0.00 6.09
4971 11854 6.201806 TGAAACTTTCCCAAATGTTTATTGCG 59.798 34.615 0.00 0.00 40.70 4.85
5068 11955 3.131223 TCGGAAAGAGATAGAACAGCTGG 59.869 47.826 19.93 0.00 0.00 4.85
5108 11996 5.044624 TCTGAAGGGGATGTTTCTGAATGAT 60.045 40.000 0.00 0.00 31.21 2.45
5180 12068 1.034838 TGCTGGCCTTGTCGTTTGTT 61.035 50.000 3.32 0.00 0.00 2.83
5259 12148 2.026822 AGTGTGAGCTATGGTGGAAAGG 60.027 50.000 0.00 0.00 0.00 3.11
5295 12184 2.435938 TTGGCCCGCTCGATCAAC 60.436 61.111 0.00 0.00 0.00 3.18
5296 12185 2.125147 CTTGGCCCGCTCGATCAA 60.125 61.111 0.00 0.00 0.00 2.57
5342 12231 1.736126 GAGACACATACCACGACGAGA 59.264 52.381 0.00 0.00 0.00 4.04
5375 12264 1.376037 GTCCAGGGGAAGAAGCACG 60.376 63.158 0.00 0.00 31.38 5.34
5430 12319 0.109086 ACGAGTCCATGAAGTCGCTG 60.109 55.000 9.30 0.00 44.14 5.18
5444 12333 3.387091 TGGCCGGTATGCACGAGT 61.387 61.111 1.90 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.