Multiple sequence alignment - TraesCS7A01G392400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G392400 chr7A 100.000 2369 0 0 1 2369 569113531 569111163 0.000000e+00 4375.0
1 TraesCS7A01G392400 chr7A 90.239 1086 66 15 975 2059 568579791 568580837 0.000000e+00 1382.0
2 TraesCS7A01G392400 chr7A 87.429 883 78 25 724 1588 568129568 568130435 0.000000e+00 985.0
3 TraesCS7A01G392400 chr7A 86.369 829 54 36 538 1357 568696133 568695355 0.000000e+00 850.0
4 TraesCS7A01G392400 chr7A 84.138 580 47 20 22 597 568578761 568579299 9.700000e-144 520.0
5 TraesCS7A01G392400 chr7A 87.528 449 35 9 1615 2059 568130432 568130863 1.260000e-137 499.0
6 TraesCS7A01G392400 chr7D 87.633 1221 73 40 669 1852 501599639 501600818 0.000000e+00 1347.0
7 TraesCS7A01G392400 chr7D 84.019 1045 77 48 617 1642 501778237 501777264 0.000000e+00 922.0
8 TraesCS7A01G392400 chr7D 85.809 754 41 27 622 1349 501610394 501609681 0.000000e+00 739.0
9 TraesCS7A01G392400 chr7D 86.543 431 29 16 22 436 501597707 501598124 4.640000e-122 448.0
10 TraesCS7A01G392400 chr7D 82.599 431 31 19 22 436 501787269 501786867 8.110000e-90 340.0
11 TraesCS7A01G392400 chr7D 82.812 320 27 11 1642 1949 501776740 501776437 6.490000e-66 261.0
12 TraesCS7A01G392400 chr7D 86.161 224 23 7 153 370 501611838 501611617 3.940000e-58 235.0
13 TraesCS7A01G392400 chr7D 92.982 114 7 1 1947 2059 501776276 501776163 5.240000e-37 165.0
14 TraesCS7A01G392400 chr7D 94.937 79 4 0 358 436 501611590 501611512 8.890000e-25 124.0
15 TraesCS7A01G392400 chr7D 91.935 62 1 1 22 79 501611928 501611867 1.510000e-12 84.2
16 TraesCS7A01G392400 chr7D 93.617 47 3 0 562 608 501508512 501508558 1.170000e-08 71.3
17 TraesCS7A01G392400 chr7B 89.091 715 37 15 943 1627 531180071 531180774 0.000000e+00 850.0
18 TraesCS7A01G392400 chr7B 85.941 818 43 32 538 1329 531222808 531222037 0.000000e+00 808.0
19 TraesCS7A01G392400 chr7B 81.258 779 81 43 679 1416 530869581 530870335 9.500000e-159 569.0
20 TraesCS7A01G392400 chr7B 88.487 304 35 0 2066 2369 154807989 154807686 3.720000e-98 368.0
21 TraesCS7A01G392400 chr7B 82.824 425 47 15 22 436 531179253 531179661 8.050000e-95 357.0
22 TraesCS7A01G392400 chr7B 87.143 280 24 9 108 377 531231160 531230883 8.220000e-80 307.0
23 TraesCS7A01G392400 chr7B 100.000 42 0 0 395 436 531230890 531230849 7.020000e-11 78.7
24 TraesCS7A01G392400 chr7B 97.619 42 1 0 562 603 530869503 530869544 3.270000e-09 73.1
25 TraesCS7A01G392400 chr4D 94.839 310 16 0 2060 2369 245077764 245077455 3.540000e-133 484.0
26 TraesCS7A01G392400 chr4A 92.258 310 24 0 2060 2369 497821453 497821762 7.770000e-120 440.0
27 TraesCS7A01G392400 chr6A 88.065 310 37 0 2060 2369 27068611 27068302 3.720000e-98 368.0
28 TraesCS7A01G392400 chr6A 87.213 305 37 2 2066 2369 63154358 63154661 1.740000e-91 346.0
29 TraesCS7A01G392400 chr1B 88.158 304 36 0 2066 2369 433154795 433155098 1.730000e-96 363.0
30 TraesCS7A01G392400 chr5D 87.742 310 34 2 2060 2369 434692556 434692861 2.240000e-95 359.0
31 TraesCS7A01G392400 chr4B 87.500 312 37 2 2059 2369 245541650 245541340 2.240000e-95 359.0
32 TraesCS7A01G392400 chr1A 87.171 304 39 0 2066 2369 535693829 535693526 1.740000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G392400 chr7A 569111163 569113531 2368 True 4375.000000 4375 100.000000 1 2369 1 chr7A.!!$R2 2368
1 TraesCS7A01G392400 chr7A 568578761 568580837 2076 False 951.000000 1382 87.188500 22 2059 2 chr7A.!!$F2 2037
2 TraesCS7A01G392400 chr7A 568695355 568696133 778 True 850.000000 850 86.369000 538 1357 1 chr7A.!!$R1 819
3 TraesCS7A01G392400 chr7A 568129568 568130863 1295 False 742.000000 985 87.478500 724 2059 2 chr7A.!!$F1 1335
4 TraesCS7A01G392400 chr7D 501597707 501600818 3111 False 897.500000 1347 87.088000 22 1852 2 chr7D.!!$F2 1830
5 TraesCS7A01G392400 chr7D 501776163 501778237 2074 True 449.333333 922 86.604333 617 2059 3 chr7D.!!$R3 1442
6 TraesCS7A01G392400 chr7D 501609681 501611928 2247 True 295.550000 739 89.710500 22 1349 4 chr7D.!!$R2 1327
7 TraesCS7A01G392400 chr7B 531222037 531222808 771 True 808.000000 808 85.941000 538 1329 1 chr7B.!!$R2 791
8 TraesCS7A01G392400 chr7B 531179253 531180774 1521 False 603.500000 850 85.957500 22 1627 2 chr7B.!!$F2 1605
9 TraesCS7A01G392400 chr7B 530869503 530870335 832 False 321.050000 569 89.438500 562 1416 2 chr7B.!!$F1 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 3273 0.385029 CACTCCCGCAGATCAGAGAG 59.615 60.0 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 5606 0.040204 AGGGGGCAAGTTTCCTCATG 59.96 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 165 3.925238 GTACGCGCCGGCATTGAG 61.925 66.667 28.98 14.77 39.92 3.02
162 167 3.650907 TACGCGCCGGCATTGAGAA 62.651 57.895 28.98 0.95 39.92 2.87
211 220 1.202592 TCAGCGCAGTACAAAGTTGGA 60.203 47.619 11.47 0.00 0.00 3.53
219 228 4.095483 GCAGTACAAAGTTGGAGATCATGG 59.905 45.833 0.00 0.00 0.00 3.66
255 265 1.569493 CGTCGTTTGTTCCAGCCTG 59.431 57.895 0.00 0.00 0.00 4.85
270 288 0.453390 GCCTGCAAATGTGTCTAGGC 59.547 55.000 10.78 10.78 43.20 3.93
290 308 0.888736 TCAACAAGGCGTGGACCATG 60.889 55.000 9.54 9.54 34.56 3.66
296 316 4.101448 GCGTGGACCATGCCTCCT 62.101 66.667 25.77 0.00 40.14 3.69
373 440 1.846175 GCCGAAAGCATGCGTTTAATC 59.154 47.619 19.89 6.64 42.97 1.75
447 542 2.992114 ACTGCCTCGGCGTTCTCT 60.992 61.111 6.85 0.00 45.51 3.10
448 543 2.507992 CTGCCTCGGCGTTCTCTG 60.508 66.667 6.85 0.00 45.51 3.35
449 544 4.742201 TGCCTCGGCGTTCTCTGC 62.742 66.667 6.85 2.55 45.51 4.26
487 603 2.951642 TGCAGAAAGTTCCAGAACCTTG 59.048 45.455 6.91 2.74 42.06 3.61
560 1932 5.480422 AGAATTCGGTTTTTATCCAAAGGCT 59.520 36.000 0.00 0.00 0.00 4.58
610 1982 3.077556 CCCAGCGGCTGTAGGAGT 61.078 66.667 26.79 0.00 0.00 3.85
611 1983 1.756950 CCCAGCGGCTGTAGGAGTA 60.757 63.158 26.79 0.00 0.00 2.59
612 1984 1.437986 CCAGCGGCTGTAGGAGTAC 59.562 63.158 26.79 0.00 0.00 2.73
630 2915 5.125739 GGAGTACTGTAGATGTTACTGTGCT 59.874 44.000 0.00 12.22 41.86 4.40
631 2916 6.318144 GGAGTACTGTAGATGTTACTGTGCTA 59.682 42.308 0.00 0.00 40.33 3.49
634 2919 4.028852 TGTAGATGTTACTGTGCTAGCG 57.971 45.455 10.77 0.00 0.00 4.26
657 2942 1.397693 CGCAGCAACAGAAAAGAGACG 60.398 52.381 0.00 0.00 0.00 4.18
658 2943 1.661460 GCAGCAACAGAAAAGAGACGC 60.661 52.381 0.00 0.00 0.00 5.19
659 2944 1.069636 CAGCAACAGAAAAGAGACGCC 60.070 52.381 0.00 0.00 0.00 5.68
660 2945 0.944386 GCAACAGAAAAGAGACGCCA 59.056 50.000 0.00 0.00 0.00 5.69
661 2946 1.333619 GCAACAGAAAAGAGACGCCAA 59.666 47.619 0.00 0.00 0.00 4.52
662 2947 2.223479 GCAACAGAAAAGAGACGCCAAA 60.223 45.455 0.00 0.00 0.00 3.28
665 2950 1.266989 CAGAAAAGAGACGCCAAACCC 59.733 52.381 0.00 0.00 0.00 4.11
700 2985 2.823147 CCCAGCAGCAGCAGTAGC 60.823 66.667 3.17 0.00 45.49 3.58
854 3203 2.366167 CCTCCTCTCCCACCCAGG 60.366 72.222 0.00 0.00 37.03 4.45
903 3257 1.687123 AGAAACCACTCTGTACGCACT 59.313 47.619 0.00 0.00 0.00 4.40
907 3261 1.154016 CACTCTGTACGCACTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
919 3273 0.385029 CACTCCCGCAGATCAGAGAG 59.615 60.000 0.00 0.00 0.00 3.20
921 3275 0.953727 CTCCCGCAGATCAGAGAGAG 59.046 60.000 0.00 0.00 0.00 3.20
923 3277 1.064389 TCCCGCAGATCAGAGAGAGAA 60.064 52.381 0.00 0.00 0.00 2.87
925 3279 2.223782 CCCGCAGATCAGAGAGAGAAAG 60.224 54.545 0.00 0.00 0.00 2.62
926 3280 2.687425 CCGCAGATCAGAGAGAGAAAGA 59.313 50.000 0.00 0.00 0.00 2.52
927 3281 3.243168 CCGCAGATCAGAGAGAGAAAGAG 60.243 52.174 0.00 0.00 0.00 2.85
928 3282 3.243168 CGCAGATCAGAGAGAGAAAGAGG 60.243 52.174 0.00 0.00 0.00 3.69
929 3283 3.953612 GCAGATCAGAGAGAGAAAGAGGA 59.046 47.826 0.00 0.00 0.00 3.71
930 3284 4.402155 GCAGATCAGAGAGAGAAAGAGGAA 59.598 45.833 0.00 0.00 0.00 3.36
931 3285 5.450965 GCAGATCAGAGAGAGAAAGAGGAAG 60.451 48.000 0.00 0.00 0.00 3.46
932 3286 5.887598 CAGATCAGAGAGAGAAAGAGGAAGA 59.112 44.000 0.00 0.00 0.00 2.87
933 3287 6.039047 CAGATCAGAGAGAGAAAGAGGAAGAG 59.961 46.154 0.00 0.00 0.00 2.85
934 3288 4.599041 TCAGAGAGAGAAAGAGGAAGAGG 58.401 47.826 0.00 0.00 0.00 3.69
935 3289 4.290985 TCAGAGAGAGAAAGAGGAAGAGGA 59.709 45.833 0.00 0.00 0.00 3.71
1113 3765 1.139095 GACGCCGTACCTCTTCCTG 59.861 63.158 0.00 0.00 0.00 3.86
1467 4139 9.760077 ATCCTAAGTAATTTTGTCGGTAGTATG 57.240 33.333 0.00 0.00 0.00 2.39
1468 4140 8.752187 TCCTAAGTAATTTTGTCGGTAGTATGT 58.248 33.333 0.00 0.00 0.00 2.29
1476 4148 5.973651 TTGTCGGTAGTATGTAGTAGTCG 57.026 43.478 0.00 0.00 0.00 4.18
1529 4270 4.732285 TCTGTGAAAGCGAATGAAGTTC 57.268 40.909 0.00 0.00 0.00 3.01
1594 4339 5.568685 TTTTCACTCACAAATTTCCACGA 57.431 34.783 0.00 0.00 0.00 4.35
1628 4373 3.776417 GTGGGTGGTATTAACTACTCCCA 59.224 47.826 16.73 16.73 44.28 4.37
1629 4374 4.411212 GTGGGTGGTATTAACTACTCCCAT 59.589 45.833 19.80 0.00 45.97 4.00
1741 5017 2.079925 GAACCACTCTCCAATGCTGAC 58.920 52.381 0.00 0.00 0.00 3.51
1762 5038 2.846039 CAGATTGATCTGCTGGCAAC 57.154 50.000 7.97 0.00 46.63 4.17
1763 5039 2.089201 CAGATTGATCTGCTGGCAACA 58.911 47.619 7.97 0.00 46.63 3.33
1824 5103 0.373716 CGGAGCTTTACACGATTGCC 59.626 55.000 0.00 0.00 0.00 4.52
1837 5116 2.780993 CGATTGCCGTAAATTGTCACC 58.219 47.619 0.00 0.00 0.00 4.02
1845 5124 1.267533 GTAAATTGTCACCGCCGGTTT 59.732 47.619 5.76 0.00 31.02 3.27
1846 5125 0.031449 AAATTGTCACCGCCGGTTTG 59.969 50.000 5.76 0.00 31.02 2.93
1847 5126 2.414840 AATTGTCACCGCCGGTTTGC 62.415 55.000 5.76 0.00 31.02 3.68
1885 5179 4.143701 CGGTTTCCGTTGAAAAATTAAGCG 60.144 41.667 0.00 0.00 41.92 4.68
1991 5448 1.122849 CAGCAATTTCGCACACACAC 58.877 50.000 0.00 0.00 0.00 3.82
1992 5449 0.737804 AGCAATTTCGCACACACACA 59.262 45.000 0.00 0.00 0.00 3.72
2004 5464 3.701241 CACACACACAACAACCAATACC 58.299 45.455 0.00 0.00 0.00 2.73
2059 5519 5.801531 ATTCTTCCACCGCACTATATGTA 57.198 39.130 0.00 0.00 0.00 2.29
2060 5520 5.601583 TTCTTCCACCGCACTATATGTAA 57.398 39.130 0.00 0.00 0.00 2.41
2061 5521 5.196341 TCTTCCACCGCACTATATGTAAG 57.804 43.478 0.00 0.00 0.00 2.34
2062 5522 4.891168 TCTTCCACCGCACTATATGTAAGA 59.109 41.667 0.00 0.00 0.00 2.10
2063 5523 5.538813 TCTTCCACCGCACTATATGTAAGAT 59.461 40.000 0.00 0.00 0.00 2.40
2064 5524 5.386958 TCCACCGCACTATATGTAAGATC 57.613 43.478 0.00 0.00 0.00 2.75
2065 5525 5.077564 TCCACCGCACTATATGTAAGATCT 58.922 41.667 0.00 0.00 0.00 2.75
2066 5526 6.243148 TCCACCGCACTATATGTAAGATCTA 58.757 40.000 0.00 0.00 0.00 1.98
2067 5527 6.890268 TCCACCGCACTATATGTAAGATCTAT 59.110 38.462 0.00 0.00 0.00 1.98
2068 5528 7.396339 TCCACCGCACTATATGTAAGATCTATT 59.604 37.037 0.00 0.00 0.00 1.73
2069 5529 7.489435 CCACCGCACTATATGTAAGATCTATTG 59.511 40.741 0.00 0.00 0.00 1.90
2070 5530 8.029522 CACCGCACTATATGTAAGATCTATTGT 58.970 37.037 0.00 0.00 0.00 2.71
2071 5531 8.585881 ACCGCACTATATGTAAGATCTATTGTT 58.414 33.333 0.00 0.00 0.00 2.83
2081 5541 8.642908 TGTAAGATCTATTGTTATCGTTGTGG 57.357 34.615 0.00 0.00 0.00 4.17
2082 5542 8.471609 TGTAAGATCTATTGTTATCGTTGTGGA 58.528 33.333 0.00 0.00 0.00 4.02
2083 5543 8.969267 GTAAGATCTATTGTTATCGTTGTGGAG 58.031 37.037 0.00 0.00 0.00 3.86
2084 5544 7.348080 AGATCTATTGTTATCGTTGTGGAGA 57.652 36.000 0.00 0.00 0.00 3.71
2085 5545 7.782049 AGATCTATTGTTATCGTTGTGGAGAA 58.218 34.615 0.00 0.00 0.00 2.87
2086 5546 7.707035 AGATCTATTGTTATCGTTGTGGAGAAC 59.293 37.037 0.00 0.00 38.33 3.01
2087 5547 6.103997 TCTATTGTTATCGTTGTGGAGAACC 58.896 40.000 0.00 0.00 37.34 3.62
2088 5548 3.755112 TGTTATCGTTGTGGAGAACCA 57.245 42.857 0.00 0.00 44.76 3.67
2096 5556 4.989458 TGGAGAACCAGGGCACTA 57.011 55.556 0.00 0.00 41.77 2.74
2097 5557 3.417330 TGGAGAACCAGGGCACTAT 57.583 52.632 0.00 0.00 41.77 2.12
2098 5558 0.911769 TGGAGAACCAGGGCACTATG 59.088 55.000 0.00 0.00 41.77 2.23
2099 5559 0.464554 GGAGAACCAGGGCACTATGC 60.465 60.000 0.00 0.00 38.24 3.14
2100 5560 0.811616 GAGAACCAGGGCACTATGCG 60.812 60.000 0.00 0.00 46.21 4.73
2101 5561 1.819632 GAACCAGGGCACTATGCGG 60.820 63.158 0.00 0.00 46.21 5.69
2102 5562 2.536997 GAACCAGGGCACTATGCGGT 62.537 60.000 0.00 0.00 46.21 5.68
2103 5563 2.137177 AACCAGGGCACTATGCGGTT 62.137 55.000 2.64 2.64 46.21 4.44
2104 5564 2.114670 CCAGGGCACTATGCGGTTG 61.115 63.158 0.00 0.00 46.21 3.77
2105 5565 2.114670 CAGGGCACTATGCGGTTGG 61.115 63.158 0.00 0.00 46.21 3.77
2106 5566 2.045340 GGGCACTATGCGGTTGGT 60.045 61.111 0.00 0.00 46.21 3.67
2107 5567 1.677633 GGGCACTATGCGGTTGGTT 60.678 57.895 0.00 0.00 46.21 3.67
2108 5568 1.506262 GGCACTATGCGGTTGGTTG 59.494 57.895 0.00 0.00 46.21 3.77
2109 5569 1.241315 GGCACTATGCGGTTGGTTGT 61.241 55.000 0.00 0.00 46.21 3.32
2110 5570 1.444836 GCACTATGCGGTTGGTTGTA 58.555 50.000 0.00 0.00 31.71 2.41
2111 5571 1.129811 GCACTATGCGGTTGGTTGTAC 59.870 52.381 0.00 0.00 31.71 2.90
2112 5572 1.392168 CACTATGCGGTTGGTTGTACG 59.608 52.381 0.00 0.00 0.00 3.67
2113 5573 1.273048 ACTATGCGGTTGGTTGTACGA 59.727 47.619 0.00 0.00 0.00 3.43
2114 5574 1.657094 CTATGCGGTTGGTTGTACGAC 59.343 52.381 4.50 4.50 0.00 4.34
2115 5575 1.286354 ATGCGGTTGGTTGTACGACG 61.286 55.000 7.17 0.00 0.00 5.12
2116 5576 2.660612 GCGGTTGGTTGTACGACGG 61.661 63.158 7.17 0.00 0.00 4.79
2117 5577 1.007502 CGGTTGGTTGTACGACGGA 60.008 57.895 7.17 0.00 0.00 4.69
2118 5578 1.005294 CGGTTGGTTGTACGACGGAG 61.005 60.000 7.17 0.00 0.00 4.63
2119 5579 1.287041 GGTTGGTTGTACGACGGAGC 61.287 60.000 7.17 4.37 0.00 4.70
2120 5580 0.319297 GTTGGTTGTACGACGGAGCT 60.319 55.000 7.17 0.00 0.00 4.09
2121 5581 0.390124 TTGGTTGTACGACGGAGCTT 59.610 50.000 7.17 0.00 0.00 3.74
2122 5582 0.390124 TGGTTGTACGACGGAGCTTT 59.610 50.000 7.17 0.00 0.00 3.51
2123 5583 0.788391 GGTTGTACGACGGAGCTTTG 59.212 55.000 7.17 0.00 0.00 2.77
2124 5584 1.494824 GTTGTACGACGGAGCTTTGT 58.505 50.000 0.00 0.00 0.00 2.83
2125 5585 1.191647 GTTGTACGACGGAGCTTTGTG 59.808 52.381 0.00 0.00 0.00 3.33
2126 5586 0.669619 TGTACGACGGAGCTTTGTGA 59.330 50.000 0.00 0.00 0.00 3.58
2127 5587 1.271379 TGTACGACGGAGCTTTGTGAT 59.729 47.619 0.00 0.00 0.00 3.06
2128 5588 2.488937 TGTACGACGGAGCTTTGTGATA 59.511 45.455 0.00 0.00 0.00 2.15
2129 5589 2.961526 ACGACGGAGCTTTGTGATAT 57.038 45.000 0.00 0.00 0.00 1.63
2130 5590 3.247006 ACGACGGAGCTTTGTGATATT 57.753 42.857 0.00 0.00 0.00 1.28
2131 5591 3.596214 ACGACGGAGCTTTGTGATATTT 58.404 40.909 0.00 0.00 0.00 1.40
2132 5592 3.370978 ACGACGGAGCTTTGTGATATTTG 59.629 43.478 0.00 0.00 0.00 2.32
2133 5593 3.685058 GACGGAGCTTTGTGATATTTGC 58.315 45.455 0.00 0.00 0.00 3.68
2134 5594 3.347216 ACGGAGCTTTGTGATATTTGCT 58.653 40.909 0.00 0.00 0.00 3.91
2135 5595 3.758554 ACGGAGCTTTGTGATATTTGCTT 59.241 39.130 0.00 0.00 0.00 3.91
2136 5596 4.100529 CGGAGCTTTGTGATATTTGCTTG 58.899 43.478 0.00 0.00 0.00 4.01
2137 5597 4.142622 CGGAGCTTTGTGATATTTGCTTGA 60.143 41.667 0.00 0.00 0.00 3.02
2138 5598 5.338365 GGAGCTTTGTGATATTTGCTTGAG 58.662 41.667 0.00 0.00 0.00 3.02
2139 5599 5.124457 GGAGCTTTGTGATATTTGCTTGAGA 59.876 40.000 0.00 0.00 0.00 3.27
2140 5600 5.947443 AGCTTTGTGATATTTGCTTGAGAC 58.053 37.500 0.00 0.00 0.00 3.36
2141 5601 5.098211 GCTTTGTGATATTTGCTTGAGACC 58.902 41.667 0.00 0.00 0.00 3.85
2142 5602 4.944962 TTGTGATATTTGCTTGAGACCG 57.055 40.909 0.00 0.00 0.00 4.79
2143 5603 4.200838 TGTGATATTTGCTTGAGACCGA 57.799 40.909 0.00 0.00 0.00 4.69
2144 5604 4.574892 TGTGATATTTGCTTGAGACCGAA 58.425 39.130 0.00 0.00 0.00 4.30
2145 5605 5.000591 TGTGATATTTGCTTGAGACCGAAA 58.999 37.500 0.00 0.00 0.00 3.46
2146 5606 5.106712 TGTGATATTTGCTTGAGACCGAAAC 60.107 40.000 0.00 0.00 0.00 2.78
2147 5607 5.000591 TGATATTTGCTTGAGACCGAAACA 58.999 37.500 0.00 0.00 0.00 2.83
2148 5608 5.647658 TGATATTTGCTTGAGACCGAAACAT 59.352 36.000 0.00 0.00 0.00 2.71
2149 5609 3.624326 TTTGCTTGAGACCGAAACATG 57.376 42.857 0.00 0.00 0.00 3.21
2150 5610 2.542020 TGCTTGAGACCGAAACATGA 57.458 45.000 0.00 0.00 0.00 3.07
2151 5611 2.416747 TGCTTGAGACCGAAACATGAG 58.583 47.619 0.00 0.00 0.00 2.90
2152 5612 1.734465 GCTTGAGACCGAAACATGAGG 59.266 52.381 0.00 0.00 0.00 3.86
2153 5613 2.612972 GCTTGAGACCGAAACATGAGGA 60.613 50.000 0.00 0.00 0.00 3.71
2154 5614 3.664107 CTTGAGACCGAAACATGAGGAA 58.336 45.455 0.00 0.00 0.00 3.36
2155 5615 3.762407 TGAGACCGAAACATGAGGAAA 57.238 42.857 0.00 0.00 0.00 3.13
2156 5616 3.399330 TGAGACCGAAACATGAGGAAAC 58.601 45.455 0.00 0.00 0.00 2.78
2158 5618 4.065789 GAGACCGAAACATGAGGAAACTT 58.934 43.478 0.00 0.00 44.43 2.66
2159 5619 3.815401 AGACCGAAACATGAGGAAACTTG 59.185 43.478 0.00 0.00 44.43 3.16
2160 5620 2.293399 ACCGAAACATGAGGAAACTTGC 59.707 45.455 0.00 0.00 44.43 4.01
2161 5621 2.351738 CCGAAACATGAGGAAACTTGCC 60.352 50.000 0.00 0.00 44.43 4.52
2162 5622 2.351738 CGAAACATGAGGAAACTTGCCC 60.352 50.000 0.00 0.00 44.43 5.36
2163 5623 1.632589 AACATGAGGAAACTTGCCCC 58.367 50.000 0.00 0.00 44.43 5.80
2164 5624 0.251787 ACATGAGGAAACTTGCCCCC 60.252 55.000 0.00 0.00 44.43 5.40
2165 5625 0.040204 CATGAGGAAACTTGCCCCCT 59.960 55.000 0.00 0.00 44.43 4.79
2166 5626 0.786435 ATGAGGAAACTTGCCCCCTT 59.214 50.000 0.00 0.00 44.43 3.95
2167 5627 0.560688 TGAGGAAACTTGCCCCCTTT 59.439 50.000 0.00 0.00 44.43 3.11
2168 5628 1.062505 TGAGGAAACTTGCCCCCTTTT 60.063 47.619 0.00 0.00 44.43 2.27
2169 5629 1.344438 GAGGAAACTTGCCCCCTTTTG 59.656 52.381 0.00 0.00 44.43 2.44
2170 5630 1.128200 GGAAACTTGCCCCCTTTTGT 58.872 50.000 0.00 0.00 0.00 2.83
2171 5631 1.070134 GGAAACTTGCCCCCTTTTGTC 59.930 52.381 0.00 0.00 0.00 3.18
2172 5632 1.760029 GAAACTTGCCCCCTTTTGTCA 59.240 47.619 0.00 0.00 0.00 3.58
2173 5633 1.413118 AACTTGCCCCCTTTTGTCAG 58.587 50.000 0.00 0.00 0.00 3.51
2174 5634 1.115326 ACTTGCCCCCTTTTGTCAGC 61.115 55.000 0.00 0.00 0.00 4.26
2175 5635 0.829182 CTTGCCCCCTTTTGTCAGCT 60.829 55.000 0.00 0.00 0.00 4.24
2176 5636 0.827507 TTGCCCCCTTTTGTCAGCTC 60.828 55.000 0.00 0.00 0.00 4.09
2177 5637 1.979155 GCCCCCTTTTGTCAGCTCC 60.979 63.158 0.00 0.00 0.00 4.70
2178 5638 1.770324 CCCCCTTTTGTCAGCTCCT 59.230 57.895 0.00 0.00 0.00 3.69
2179 5639 0.991920 CCCCCTTTTGTCAGCTCCTA 59.008 55.000 0.00 0.00 0.00 2.94
2180 5640 1.354368 CCCCCTTTTGTCAGCTCCTAA 59.646 52.381 0.00 0.00 0.00 2.69
2181 5641 2.619074 CCCCCTTTTGTCAGCTCCTAAG 60.619 54.545 0.00 0.00 0.00 2.18
2191 5651 3.957288 GCTCCTAAGCCTTTGGTGA 57.043 52.632 10.51 0.00 43.10 4.02
2192 5652 2.200373 GCTCCTAAGCCTTTGGTGAA 57.800 50.000 10.51 0.00 43.10 3.18
2193 5653 1.813178 GCTCCTAAGCCTTTGGTGAAC 59.187 52.381 10.51 0.00 43.10 3.18
2194 5654 2.553247 GCTCCTAAGCCTTTGGTGAACT 60.553 50.000 10.51 0.00 43.10 3.01
2195 5655 3.756117 CTCCTAAGCCTTTGGTGAACTT 58.244 45.455 4.85 0.00 0.00 2.66
2196 5656 4.145052 CTCCTAAGCCTTTGGTGAACTTT 58.855 43.478 4.85 0.00 0.00 2.66
2197 5657 4.542697 TCCTAAGCCTTTGGTGAACTTTT 58.457 39.130 4.85 0.00 0.00 2.27
2198 5658 5.697067 TCCTAAGCCTTTGGTGAACTTTTA 58.303 37.500 4.85 0.00 0.00 1.52
2199 5659 6.311735 TCCTAAGCCTTTGGTGAACTTTTAT 58.688 36.000 4.85 0.00 0.00 1.40
2200 5660 6.208599 TCCTAAGCCTTTGGTGAACTTTTATG 59.791 38.462 4.85 0.00 0.00 1.90
2201 5661 4.871933 AGCCTTTGGTGAACTTTTATGG 57.128 40.909 0.00 0.00 0.00 2.74
2202 5662 4.223144 AGCCTTTGGTGAACTTTTATGGT 58.777 39.130 0.00 0.00 0.00 3.55
2203 5663 4.039124 AGCCTTTGGTGAACTTTTATGGTG 59.961 41.667 0.00 0.00 0.00 4.17
2204 5664 4.202212 GCCTTTGGTGAACTTTTATGGTGT 60.202 41.667 0.00 0.00 0.00 4.16
2205 5665 5.010213 GCCTTTGGTGAACTTTTATGGTGTA 59.990 40.000 0.00 0.00 0.00 2.90
2206 5666 6.295067 GCCTTTGGTGAACTTTTATGGTGTAT 60.295 38.462 0.00 0.00 0.00 2.29
2207 5667 7.090173 CCTTTGGTGAACTTTTATGGTGTATG 58.910 38.462 0.00 0.00 0.00 2.39
2208 5668 7.255801 CCTTTGGTGAACTTTTATGGTGTATGT 60.256 37.037 0.00 0.00 0.00 2.29
2209 5669 6.567687 TGGTGAACTTTTATGGTGTATGTG 57.432 37.500 0.00 0.00 0.00 3.21
2210 5670 6.299922 TGGTGAACTTTTATGGTGTATGTGA 58.700 36.000 0.00 0.00 0.00 3.58
2211 5671 6.945435 TGGTGAACTTTTATGGTGTATGTGAT 59.055 34.615 0.00 0.00 0.00 3.06
2212 5672 7.094420 TGGTGAACTTTTATGGTGTATGTGATG 60.094 37.037 0.00 0.00 0.00 3.07
2213 5673 7.120579 GGTGAACTTTTATGGTGTATGTGATGA 59.879 37.037 0.00 0.00 0.00 2.92
2214 5674 8.511321 GTGAACTTTTATGGTGTATGTGATGAA 58.489 33.333 0.00 0.00 0.00 2.57
2215 5675 9.072375 TGAACTTTTATGGTGTATGTGATGAAA 57.928 29.630 0.00 0.00 0.00 2.69
2216 5676 9.906660 GAACTTTTATGGTGTATGTGATGAAAA 57.093 29.630 0.00 0.00 0.00 2.29
2218 5678 9.691362 ACTTTTATGGTGTATGTGATGAAAAAC 57.309 29.630 0.00 0.00 0.00 2.43
2219 5679 9.912634 CTTTTATGGTGTATGTGATGAAAAACT 57.087 29.630 0.00 0.00 0.00 2.66
2224 5684 8.402798 TGGTGTATGTGATGAAAAACTTATGT 57.597 30.769 0.00 0.00 0.00 2.29
2225 5685 8.855110 TGGTGTATGTGATGAAAAACTTATGTT 58.145 29.630 0.00 0.00 38.16 2.71
2226 5686 9.341899 GGTGTATGTGATGAAAAACTTATGTTC 57.658 33.333 0.00 0.00 34.96 3.18
2232 5692 9.734620 TGTGATGAAAAACTTATGTTCTTTGAG 57.265 29.630 0.00 0.00 34.96 3.02
2233 5693 9.950680 GTGATGAAAAACTTATGTTCTTTGAGA 57.049 29.630 0.00 0.00 34.96 3.27
2234 5694 9.950680 TGATGAAAAACTTATGTTCTTTGAGAC 57.049 29.630 0.00 0.00 34.96 3.36
2235 5695 9.950680 GATGAAAAACTTATGTTCTTTGAGACA 57.049 29.630 0.00 0.00 34.96 3.41
2236 5696 9.736023 ATGAAAAACTTATGTTCTTTGAGACAC 57.264 29.630 0.00 0.00 34.96 3.67
2237 5697 8.188139 TGAAAAACTTATGTTCTTTGAGACACC 58.812 33.333 0.00 0.00 34.96 4.16
2238 5698 7.639113 AAAACTTATGTTCTTTGAGACACCA 57.361 32.000 0.00 0.00 34.96 4.17
2239 5699 7.639113 AAACTTATGTTCTTTGAGACACCAA 57.361 32.000 0.00 0.00 34.96 3.67
2240 5700 6.619801 ACTTATGTTCTTTGAGACACCAAC 57.380 37.500 0.00 0.00 0.00 3.77
2241 5701 5.236478 ACTTATGTTCTTTGAGACACCAACG 59.764 40.000 0.00 0.00 0.00 4.10
2242 5702 3.254470 TGTTCTTTGAGACACCAACGA 57.746 42.857 0.00 0.00 0.00 3.85
2243 5703 3.804036 TGTTCTTTGAGACACCAACGAT 58.196 40.909 0.00 0.00 0.00 3.73
2244 5704 3.559655 TGTTCTTTGAGACACCAACGATG 59.440 43.478 0.00 0.00 0.00 3.84
2245 5705 3.744238 TCTTTGAGACACCAACGATGA 57.256 42.857 0.00 0.00 0.00 2.92
2246 5706 3.653344 TCTTTGAGACACCAACGATGAG 58.347 45.455 0.00 0.00 0.00 2.90
2247 5707 3.320826 TCTTTGAGACACCAACGATGAGA 59.679 43.478 0.00 0.00 0.00 3.27
2248 5708 3.961480 TTGAGACACCAACGATGAGAT 57.039 42.857 0.00 0.00 0.00 2.75
2249 5709 3.510388 TGAGACACCAACGATGAGATC 57.490 47.619 0.00 0.00 0.00 2.75
2250 5710 3.092301 TGAGACACCAACGATGAGATCT 58.908 45.455 0.00 0.00 0.00 2.75
2251 5711 3.511540 TGAGACACCAACGATGAGATCTT 59.488 43.478 0.00 0.00 0.00 2.40
2252 5712 3.854666 AGACACCAACGATGAGATCTTG 58.145 45.455 0.00 0.00 0.00 3.02
2253 5713 3.259374 AGACACCAACGATGAGATCTTGT 59.741 43.478 0.00 0.00 0.00 3.16
2254 5714 4.462834 AGACACCAACGATGAGATCTTGTA 59.537 41.667 0.00 0.00 0.00 2.41
2255 5715 4.748892 ACACCAACGATGAGATCTTGTAG 58.251 43.478 0.00 0.00 0.00 2.74
2256 5716 4.462834 ACACCAACGATGAGATCTTGTAGA 59.537 41.667 0.00 0.00 0.00 2.59
2257 5717 4.800993 CACCAACGATGAGATCTTGTAGAC 59.199 45.833 0.00 0.00 0.00 2.59
2258 5718 4.142138 ACCAACGATGAGATCTTGTAGACC 60.142 45.833 0.00 0.00 0.00 3.85
2259 5719 4.142160 CCAACGATGAGATCTTGTAGACCA 60.142 45.833 0.00 0.00 0.00 4.02
2260 5720 5.452496 CCAACGATGAGATCTTGTAGACCAT 60.452 44.000 0.00 0.00 0.00 3.55
2261 5721 5.193663 ACGATGAGATCTTGTAGACCATG 57.806 43.478 0.00 0.00 0.00 3.66
2262 5722 4.038522 ACGATGAGATCTTGTAGACCATGG 59.961 45.833 11.19 11.19 0.00 3.66
2263 5723 3.827008 TGAGATCTTGTAGACCATGGC 57.173 47.619 13.04 4.70 0.00 4.40
2264 5724 3.378512 TGAGATCTTGTAGACCATGGCT 58.621 45.455 13.04 12.67 0.00 4.75
2265 5725 3.133542 TGAGATCTTGTAGACCATGGCTG 59.866 47.826 13.04 0.00 0.00 4.85
2267 5727 1.951209 TCTTGTAGACCATGGCTGGA 58.049 50.000 13.04 5.52 46.37 3.86
2268 5728 1.833630 TCTTGTAGACCATGGCTGGAG 59.166 52.381 13.04 9.56 46.37 3.86
2269 5729 1.833630 CTTGTAGACCATGGCTGGAGA 59.166 52.381 13.04 0.00 46.37 3.71
2270 5730 1.951209 TGTAGACCATGGCTGGAGAA 58.049 50.000 13.04 0.00 46.37 2.87
2271 5731 2.481441 TGTAGACCATGGCTGGAGAAT 58.519 47.619 13.04 0.00 46.37 2.40
2272 5732 2.171237 TGTAGACCATGGCTGGAGAATG 59.829 50.000 13.04 0.00 46.37 2.67
2273 5733 0.106819 AGACCATGGCTGGAGAATGC 60.107 55.000 13.04 0.00 46.37 3.56
2274 5734 0.106819 GACCATGGCTGGAGAATGCT 60.107 55.000 13.04 0.00 46.37 3.79
2275 5735 1.141657 GACCATGGCTGGAGAATGCTA 59.858 52.381 13.04 0.00 46.37 3.49
2276 5736 1.142465 ACCATGGCTGGAGAATGCTAG 59.858 52.381 13.04 0.00 46.37 3.42
2277 5737 1.419012 CCATGGCTGGAGAATGCTAGA 59.581 52.381 0.00 0.00 46.37 2.43
2278 5738 2.158711 CCATGGCTGGAGAATGCTAGAA 60.159 50.000 0.00 0.00 46.37 2.10
2279 5739 2.698855 TGGCTGGAGAATGCTAGAAC 57.301 50.000 0.00 0.00 0.00 3.01
2280 5740 1.210478 TGGCTGGAGAATGCTAGAACC 59.790 52.381 0.00 0.00 0.00 3.62
2281 5741 1.576356 GCTGGAGAATGCTAGAACCG 58.424 55.000 0.00 0.00 0.00 4.44
2282 5742 1.137086 GCTGGAGAATGCTAGAACCGA 59.863 52.381 0.00 0.00 0.00 4.69
2283 5743 2.815478 CTGGAGAATGCTAGAACCGAC 58.185 52.381 0.00 0.00 0.00 4.79
2284 5744 2.166459 CTGGAGAATGCTAGAACCGACA 59.834 50.000 0.00 0.00 0.00 4.35
2285 5745 2.766263 TGGAGAATGCTAGAACCGACAT 59.234 45.455 0.00 0.00 0.00 3.06
2286 5746 3.181475 TGGAGAATGCTAGAACCGACATC 60.181 47.826 0.00 0.00 0.00 3.06
2287 5747 3.181475 GGAGAATGCTAGAACCGACATCA 60.181 47.826 0.00 0.00 0.00 3.07
2288 5748 4.502259 GGAGAATGCTAGAACCGACATCAT 60.502 45.833 0.00 0.00 0.00 2.45
2289 5749 5.028549 AGAATGCTAGAACCGACATCATT 57.971 39.130 0.00 0.00 0.00 2.57
2290 5750 5.053145 AGAATGCTAGAACCGACATCATTC 58.947 41.667 0.00 0.00 38.83 2.67
2291 5751 2.809446 TGCTAGAACCGACATCATTCG 58.191 47.619 0.00 0.00 38.80 3.34
2292 5752 2.425668 TGCTAGAACCGACATCATTCGA 59.574 45.455 0.00 0.00 41.78 3.71
2293 5753 3.046390 GCTAGAACCGACATCATTCGAG 58.954 50.000 0.00 0.00 41.78 4.04
2294 5754 3.489398 GCTAGAACCGACATCATTCGAGT 60.489 47.826 0.00 0.00 41.78 4.18
2295 5755 2.881074 AGAACCGACATCATTCGAGTG 58.119 47.619 0.68 0.68 41.78 3.51
2296 5756 2.492088 AGAACCGACATCATTCGAGTGA 59.508 45.455 13.38 13.38 41.78 3.41
2297 5757 2.279582 ACCGACATCATTCGAGTGAC 57.720 50.000 13.28 0.00 41.78 3.67
2298 5758 1.819288 ACCGACATCATTCGAGTGACT 59.181 47.619 13.28 1.11 41.78 3.41
2299 5759 3.014623 ACCGACATCATTCGAGTGACTA 58.985 45.455 13.28 0.00 41.78 2.59
2300 5760 3.442625 ACCGACATCATTCGAGTGACTAA 59.557 43.478 13.28 0.00 41.78 2.24
2301 5761 4.038361 CCGACATCATTCGAGTGACTAAG 58.962 47.826 13.28 6.39 41.78 2.18
2302 5762 4.038361 CGACATCATTCGAGTGACTAAGG 58.962 47.826 13.28 3.71 41.78 2.69
2303 5763 4.363999 GACATCATTCGAGTGACTAAGGG 58.636 47.826 13.28 2.07 0.00 3.95
2304 5764 2.961526 TCATTCGAGTGACTAAGGGC 57.038 50.000 6.51 0.00 0.00 5.19
2305 5765 2.457598 TCATTCGAGTGACTAAGGGCT 58.542 47.619 6.51 0.00 0.00 5.19
2306 5766 2.427453 TCATTCGAGTGACTAAGGGCTC 59.573 50.000 6.51 0.00 0.00 4.70
2307 5767 2.217510 TTCGAGTGACTAAGGGCTCT 57.782 50.000 0.00 0.00 0.00 4.09
2308 5768 1.752683 TCGAGTGACTAAGGGCTCTC 58.247 55.000 0.00 0.00 0.00 3.20
2309 5769 1.282447 TCGAGTGACTAAGGGCTCTCT 59.718 52.381 0.00 0.00 0.00 3.10
2310 5770 2.096248 CGAGTGACTAAGGGCTCTCTT 58.904 52.381 0.00 0.00 0.00 2.85
2311 5771 2.494073 CGAGTGACTAAGGGCTCTCTTT 59.506 50.000 0.00 0.00 0.00 2.52
2312 5772 3.428316 CGAGTGACTAAGGGCTCTCTTTC 60.428 52.174 0.00 0.00 0.00 2.62
2313 5773 2.494073 AGTGACTAAGGGCTCTCTTTCG 59.506 50.000 0.00 0.00 0.00 3.46
2314 5774 1.825474 TGACTAAGGGCTCTCTTTCGG 59.175 52.381 0.00 0.00 0.00 4.30
2315 5775 2.100989 GACTAAGGGCTCTCTTTCGGA 58.899 52.381 0.00 0.00 0.00 4.55
2316 5776 2.100087 GACTAAGGGCTCTCTTTCGGAG 59.900 54.545 0.00 0.00 43.12 4.63
2317 5777 1.410882 CTAAGGGCTCTCTTTCGGAGG 59.589 57.143 0.00 0.00 42.10 4.30
2318 5778 0.252284 AAGGGCTCTCTTTCGGAGGA 60.252 55.000 0.00 0.00 42.10 3.71
2319 5779 0.973496 AGGGCTCTCTTTCGGAGGAC 60.973 60.000 0.00 0.00 42.10 3.85
2320 5780 1.518302 GGCTCTCTTTCGGAGGACC 59.482 63.158 0.00 0.00 42.10 4.46
2321 5781 1.258445 GGCTCTCTTTCGGAGGACCA 61.258 60.000 0.00 0.00 42.10 4.02
2322 5782 0.608640 GCTCTCTTTCGGAGGACCAA 59.391 55.000 0.00 0.00 42.10 3.67
2323 5783 1.404851 GCTCTCTTTCGGAGGACCAAG 60.405 57.143 0.00 0.00 42.10 3.61
2324 5784 1.896465 CTCTCTTTCGGAGGACCAAGT 59.104 52.381 0.00 0.00 42.10 3.16
2325 5785 2.300437 CTCTCTTTCGGAGGACCAAGTT 59.700 50.000 0.00 0.00 42.10 2.66
2326 5786 3.503365 TCTCTTTCGGAGGACCAAGTTA 58.497 45.455 0.00 0.00 42.10 2.24
2327 5787 4.094476 TCTCTTTCGGAGGACCAAGTTAT 58.906 43.478 0.00 0.00 42.10 1.89
2328 5788 4.530946 TCTCTTTCGGAGGACCAAGTTATT 59.469 41.667 0.00 0.00 42.10 1.40
2329 5789 4.828829 TCTTTCGGAGGACCAAGTTATTC 58.171 43.478 0.00 0.00 35.59 1.75
2330 5790 4.530946 TCTTTCGGAGGACCAAGTTATTCT 59.469 41.667 0.00 0.00 35.59 2.40
2331 5791 3.887621 TCGGAGGACCAAGTTATTCTG 57.112 47.619 0.00 0.00 35.59 3.02
2332 5792 2.093658 TCGGAGGACCAAGTTATTCTGC 60.094 50.000 0.00 0.00 35.59 4.26
2333 5793 2.354704 CGGAGGACCAAGTTATTCTGCA 60.355 50.000 0.00 0.00 35.59 4.41
2334 5794 3.686016 GGAGGACCAAGTTATTCTGCAA 58.314 45.455 0.00 0.00 35.97 4.08
2335 5795 3.440522 GGAGGACCAAGTTATTCTGCAAC 59.559 47.826 0.00 0.00 35.97 4.17
2336 5796 4.327680 GAGGACCAAGTTATTCTGCAACT 58.672 43.478 0.00 0.00 37.85 3.16
2337 5797 4.729868 AGGACCAAGTTATTCTGCAACTT 58.270 39.130 0.00 0.00 44.91 2.66
2338 5798 5.876357 AGGACCAAGTTATTCTGCAACTTA 58.124 37.500 0.56 0.00 42.79 2.24
2339 5799 6.303839 AGGACCAAGTTATTCTGCAACTTAA 58.696 36.000 0.56 0.00 42.79 1.85
2340 5800 6.431234 AGGACCAAGTTATTCTGCAACTTAAG 59.569 38.462 0.00 0.00 42.79 1.85
2341 5801 6.430000 GGACCAAGTTATTCTGCAACTTAAGA 59.570 38.462 10.09 0.00 42.79 2.10
2342 5802 7.361286 GGACCAAGTTATTCTGCAACTTAAGAG 60.361 40.741 10.09 2.35 42.79 2.85
2343 5803 7.224297 ACCAAGTTATTCTGCAACTTAAGAGA 58.776 34.615 10.09 0.00 42.79 3.10
2344 5804 7.885399 ACCAAGTTATTCTGCAACTTAAGAGAT 59.115 33.333 10.09 0.00 42.79 2.75
2345 5805 8.734386 CCAAGTTATTCTGCAACTTAAGAGATT 58.266 33.333 10.09 1.03 42.79 2.40
2346 5806 9.552114 CAAGTTATTCTGCAACTTAAGAGATTG 57.448 33.333 10.09 4.72 42.79 2.67
2347 5807 8.273780 AGTTATTCTGCAACTTAAGAGATTGG 57.726 34.615 10.09 0.00 32.28 3.16
2348 5808 7.885399 AGTTATTCTGCAACTTAAGAGATTGGT 59.115 33.333 10.09 0.00 32.28 3.67
2349 5809 6.749923 ATTCTGCAACTTAAGAGATTGGTC 57.250 37.500 10.09 0.00 0.00 4.02
2350 5810 5.489792 TCTGCAACTTAAGAGATTGGTCT 57.510 39.130 10.09 0.00 37.42 3.85
2363 5823 5.971763 GAGATTGGTCTCTAGCTCTTTTCA 58.028 41.667 0.00 0.00 46.03 2.69
2364 5824 5.976458 AGATTGGTCTCTAGCTCTTTTCAG 58.024 41.667 0.00 0.00 0.00 3.02
2365 5825 5.483583 AGATTGGTCTCTAGCTCTTTTCAGT 59.516 40.000 0.00 0.00 0.00 3.41
2366 5826 4.527509 TGGTCTCTAGCTCTTTTCAGTG 57.472 45.455 0.00 0.00 0.00 3.66
2367 5827 3.259374 TGGTCTCTAGCTCTTTTCAGTGG 59.741 47.826 0.00 0.00 0.00 4.00
2368 5828 3.368948 GGTCTCTAGCTCTTTTCAGTGGG 60.369 52.174 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.666190 TCGACCGTCGACGAACCT 60.666 61.111 37.65 17.27 44.82 3.50
11 12 4.986587 TTGCCGTGTCGTCGACCG 62.987 66.667 22.05 21.84 38.13 4.79
12 13 3.103911 CTTGCCGTGTCGTCGACC 61.104 66.667 22.05 12.43 0.00 4.79
13 14 3.103911 CCTTGCCGTGTCGTCGAC 61.104 66.667 18.51 18.51 0.00 4.20
14 15 3.141522 AACCTTGCCGTGTCGTCGA 62.142 57.895 0.00 0.00 0.00 4.20
15 16 2.654912 GAACCTTGCCGTGTCGTCG 61.655 63.158 0.00 0.00 0.00 5.12
16 17 2.654912 CGAACCTTGCCGTGTCGTC 61.655 63.158 0.00 0.00 0.00 4.20
17 18 2.660552 CGAACCTTGCCGTGTCGT 60.661 61.111 0.00 0.00 0.00 4.34
18 19 4.072088 GCGAACCTTGCCGTGTCG 62.072 66.667 0.00 0.00 0.00 4.35
19 20 2.665185 AGCGAACCTTGCCGTGTC 60.665 61.111 0.00 0.00 0.00 3.67
20 21 2.933878 TTCAGCGAACCTTGCCGTGT 62.934 55.000 0.00 0.00 0.00 4.49
242 251 1.761784 ACATTTGCAGGCTGGAACAAA 59.238 42.857 21.63 19.03 38.70 2.83
245 254 0.675633 ACACATTTGCAGGCTGGAAC 59.324 50.000 21.63 1.97 0.00 3.62
246 255 0.961019 GACACATTTGCAGGCTGGAA 59.039 50.000 18.03 18.03 0.00 3.53
255 265 2.813754 TGTTGAGCCTAGACACATTTGC 59.186 45.455 0.00 0.00 0.00 3.68
270 288 0.606401 ATGGTCCACGCCTTGTTGAG 60.606 55.000 0.00 0.00 0.00 3.02
290 308 1.072331 TGAACTTGGTTCAGAGGAGGC 59.928 52.381 8.75 0.00 45.88 4.70
447 542 1.068895 CAAAAATCTGTGGCAGTGGCA 59.931 47.619 16.56 16.56 43.71 4.92
448 543 1.787012 CAAAAATCTGTGGCAGTGGC 58.213 50.000 10.30 10.30 40.13 5.01
449 544 1.068895 TGCAAAAATCTGTGGCAGTGG 59.931 47.619 0.00 0.00 32.61 4.00
450 545 2.400399 CTGCAAAAATCTGTGGCAGTG 58.600 47.619 0.00 0.00 45.11 3.66
451 546 2.806608 CTGCAAAAATCTGTGGCAGT 57.193 45.000 0.00 0.00 45.11 4.40
454 570 3.721035 ACTTTCTGCAAAAATCTGTGGC 58.279 40.909 0.00 0.00 0.00 5.01
560 1932 1.356398 GGATGGTGGGACCTGGTTTTA 59.644 52.381 0.00 0.00 39.58 1.52
610 1982 5.220796 CGCTAGCACAGTAACATCTACAGTA 60.221 44.000 16.45 0.00 0.00 2.74
611 1983 4.438880 CGCTAGCACAGTAACATCTACAGT 60.439 45.833 16.45 0.00 0.00 3.55
612 1984 4.038361 CGCTAGCACAGTAACATCTACAG 58.962 47.826 16.45 0.00 0.00 2.74
634 2919 1.372128 CTTTTCTGTTGCTGCGGCC 60.372 57.895 16.57 0.02 37.74 6.13
657 2942 2.813726 GGGTTGGGTTGGGTTTGGC 61.814 63.158 0.00 0.00 0.00 4.52
658 2943 0.983378 TTGGGTTGGGTTGGGTTTGG 60.983 55.000 0.00 0.00 0.00 3.28
659 2944 0.179234 GTTGGGTTGGGTTGGGTTTG 59.821 55.000 0.00 0.00 0.00 2.93
660 2945 0.983905 GGTTGGGTTGGGTTGGGTTT 60.984 55.000 0.00 0.00 0.00 3.27
661 2946 1.383386 GGTTGGGTTGGGTTGGGTT 60.383 57.895 0.00 0.00 0.00 4.11
662 2947 2.182858 TTGGTTGGGTTGGGTTGGGT 62.183 55.000 0.00 0.00 0.00 4.51
665 2950 0.179234 GGTTTGGTTGGGTTGGGTTG 59.821 55.000 0.00 0.00 0.00 3.77
854 3203 2.280119 TGTGGCTGTGACGACTGC 60.280 61.111 0.00 0.00 44.22 4.40
903 3257 0.548510 TCTCTCTCTGATCTGCGGGA 59.451 55.000 0.00 0.00 0.00 5.14
907 3261 3.953612 TCCTCTTTCTCTCTCTGATCTGC 59.046 47.826 0.00 0.00 0.00 4.26
919 3273 4.349365 TCCTCTTCCTCTTCCTCTTTCTC 58.651 47.826 0.00 0.00 0.00 2.87
921 3275 4.775253 TCTTCCTCTTCCTCTTCCTCTTTC 59.225 45.833 0.00 0.00 0.00 2.62
923 3277 4.045334 TCTCTTCCTCTTCCTCTTCCTCTT 59.955 45.833 0.00 0.00 0.00 2.85
925 3279 3.976015 TCTCTTCCTCTTCCTCTTCCTC 58.024 50.000 0.00 0.00 0.00 3.71
926 3280 4.412060 TTCTCTTCCTCTTCCTCTTCCT 57.588 45.455 0.00 0.00 0.00 3.36
927 3281 4.775253 TCTTTCTCTTCCTCTTCCTCTTCC 59.225 45.833 0.00 0.00 0.00 3.46
928 3282 5.714806 TCTCTTTCTCTTCCTCTTCCTCTTC 59.285 44.000 0.00 0.00 0.00 2.87
929 3283 5.650283 TCTCTTTCTCTTCCTCTTCCTCTT 58.350 41.667 0.00 0.00 0.00 2.85
930 3284 5.015178 TCTCTCTTTCTCTTCCTCTTCCTCT 59.985 44.000 0.00 0.00 0.00 3.69
931 3285 5.261216 TCTCTCTTTCTCTTCCTCTTCCTC 58.739 45.833 0.00 0.00 0.00 3.71
932 3286 5.015178 TCTCTCTCTTTCTCTTCCTCTTCCT 59.985 44.000 0.00 0.00 0.00 3.36
933 3287 5.261216 TCTCTCTCTTTCTCTTCCTCTTCC 58.739 45.833 0.00 0.00 0.00 3.46
934 3288 8.519799 TTATCTCTCTCTTTCTCTTCCTCTTC 57.480 38.462 0.00 0.00 0.00 2.87
935 3289 8.336235 TCTTATCTCTCTCTTTCTCTTCCTCTT 58.664 37.037 0.00 0.00 0.00 2.85
1401 4071 3.491342 TGATGAACAAAATTGGTCCCGA 58.509 40.909 8.62 0.00 44.20 5.14
1476 4148 2.767697 GGCGCTAACGTCGTGAAC 59.232 61.111 7.64 0.00 42.83 3.18
1529 4270 3.864944 CAAGCAATGCAAAGCCGG 58.135 55.556 8.35 0.00 0.00 6.13
1594 4339 0.251165 CCACCCACCCAAACGAGAAT 60.251 55.000 0.00 0.00 0.00 2.40
1628 4373 1.153568 CCCAGCATGACGACGACAT 60.154 57.895 6.99 6.99 39.69 3.06
1629 4374 2.261361 CCCAGCATGACGACGACA 59.739 61.111 0.00 0.88 39.69 4.35
1761 5037 6.579666 ATGCTTATCACTTTGTGTCATTGT 57.420 33.333 0.00 0.00 34.79 2.71
1762 5038 7.216881 CGTAATGCTTATCACTTTGTGTCATTG 59.783 37.037 0.00 0.00 34.79 2.82
1763 5039 7.119116 TCGTAATGCTTATCACTTTGTGTCATT 59.881 33.333 0.00 0.00 34.79 2.57
1824 5103 1.293267 ACCGGCGGTGACAATTTACG 61.293 55.000 33.71 0.00 32.98 3.18
1830 5109 3.587933 GCAAACCGGCGGTGACAA 61.588 61.111 34.87 0.00 35.34 3.18
1845 5124 1.641140 CGAAAGTTCACTGTGCGCA 59.359 52.632 5.66 5.66 0.00 6.09
1846 5125 1.082756 CCGAAAGTTCACTGTGCGC 60.083 57.895 0.00 0.00 0.00 6.09
1847 5126 0.655733 AACCGAAAGTTCACTGTGCG 59.344 50.000 2.12 0.00 30.99 5.34
1912 5206 7.203910 AGTTGCTAGAATTATGACTTACGGAG 58.796 38.462 0.00 0.00 0.00 4.63
1913 5207 7.108841 AGTTGCTAGAATTATGACTTACGGA 57.891 36.000 0.00 0.00 0.00 4.69
1914 5208 9.477484 AATAGTTGCTAGAATTATGACTTACGG 57.523 33.333 0.00 0.00 0.00 4.02
1942 5236 7.380536 TGACGTTTAATTCACCTACTACATGT 58.619 34.615 2.69 2.69 0.00 3.21
1963 5420 1.906966 GCGAAATTGCTGTTCATGACG 59.093 47.619 0.00 0.00 0.00 4.35
1991 5448 3.886123 CCTAGGGAGGTATTGGTTGTTG 58.114 50.000 0.00 0.00 38.16 3.33
1992 5449 2.241430 GCCTAGGGAGGTATTGGTTGTT 59.759 50.000 11.72 0.00 45.78 2.83
2004 5464 1.799933 ACCATCAGAAGCCTAGGGAG 58.200 55.000 11.72 0.00 0.00 4.30
2059 5519 7.782049 TCTCCACAACGATAACAATAGATCTT 58.218 34.615 0.00 0.00 0.00 2.40
2060 5520 7.348080 TCTCCACAACGATAACAATAGATCT 57.652 36.000 0.00 0.00 0.00 2.75
2061 5521 7.042658 GGTTCTCCACAACGATAACAATAGATC 60.043 40.741 0.00 0.00 0.00 2.75
2062 5522 6.761714 GGTTCTCCACAACGATAACAATAGAT 59.238 38.462 0.00 0.00 0.00 1.98
2063 5523 6.103997 GGTTCTCCACAACGATAACAATAGA 58.896 40.000 0.00 0.00 0.00 1.98
2064 5524 5.872617 TGGTTCTCCACAACGATAACAATAG 59.127 40.000 0.00 0.00 39.03 1.73
2065 5525 5.795972 TGGTTCTCCACAACGATAACAATA 58.204 37.500 0.00 0.00 39.03 1.90
2066 5526 4.647611 TGGTTCTCCACAACGATAACAAT 58.352 39.130 0.00 0.00 39.03 2.71
2067 5527 4.062293 CTGGTTCTCCACAACGATAACAA 58.938 43.478 0.00 0.00 39.03 2.83
2068 5528 3.556213 CCTGGTTCTCCACAACGATAACA 60.556 47.826 0.00 0.00 39.03 2.41
2069 5529 3.000727 CCTGGTTCTCCACAACGATAAC 58.999 50.000 0.00 0.00 39.03 1.89
2070 5530 2.027561 CCCTGGTTCTCCACAACGATAA 60.028 50.000 0.00 0.00 39.03 1.75
2071 5531 1.553248 CCCTGGTTCTCCACAACGATA 59.447 52.381 0.00 0.00 39.03 2.92
2072 5532 0.324943 CCCTGGTTCTCCACAACGAT 59.675 55.000 0.00 0.00 39.03 3.73
2073 5533 1.752198 CCCTGGTTCTCCACAACGA 59.248 57.895 0.00 0.00 39.03 3.85
2074 5534 1.966451 GCCCTGGTTCTCCACAACG 60.966 63.158 0.00 0.00 39.03 4.10
2075 5535 1.150536 TGCCCTGGTTCTCCACAAC 59.849 57.895 0.00 0.00 39.03 3.32
2076 5536 1.150536 GTGCCCTGGTTCTCCACAA 59.849 57.895 0.00 0.00 39.03 3.33
2077 5537 0.472925 TAGTGCCCTGGTTCTCCACA 60.473 55.000 0.00 0.00 39.03 4.17
2078 5538 0.912486 ATAGTGCCCTGGTTCTCCAC 59.088 55.000 0.00 0.00 39.03 4.02
2079 5539 0.911769 CATAGTGCCCTGGTTCTCCA 59.088 55.000 0.00 0.00 42.05 3.86
2080 5540 0.464554 GCATAGTGCCCTGGTTCTCC 60.465 60.000 0.00 0.00 37.42 3.71
2081 5541 0.811616 CGCATAGTGCCCTGGTTCTC 60.812 60.000 0.00 0.00 41.12 2.87
2082 5542 1.221840 CGCATAGTGCCCTGGTTCT 59.778 57.895 0.00 0.00 41.12 3.01
2083 5543 1.819632 CCGCATAGTGCCCTGGTTC 60.820 63.158 0.00 0.00 41.12 3.62
2084 5544 2.137177 AACCGCATAGTGCCCTGGTT 62.137 55.000 6.83 6.83 41.12 3.67
2085 5545 2.602676 AACCGCATAGTGCCCTGGT 61.603 57.895 0.00 0.00 41.12 4.00
2086 5546 2.114670 CAACCGCATAGTGCCCTGG 61.115 63.158 0.00 0.00 41.12 4.45
2087 5547 2.114670 CCAACCGCATAGTGCCCTG 61.115 63.158 0.00 0.00 41.12 4.45
2088 5548 2.137177 AACCAACCGCATAGTGCCCT 62.137 55.000 0.00 0.00 41.12 5.19
2089 5549 1.677633 AACCAACCGCATAGTGCCC 60.678 57.895 0.00 0.00 41.12 5.36
2090 5550 1.241315 ACAACCAACCGCATAGTGCC 61.241 55.000 0.00 0.00 41.12 5.01
2091 5551 1.129811 GTACAACCAACCGCATAGTGC 59.870 52.381 0.00 0.00 40.69 4.40
2092 5552 1.392168 CGTACAACCAACCGCATAGTG 59.608 52.381 0.00 0.00 0.00 2.74
2093 5553 1.273048 TCGTACAACCAACCGCATAGT 59.727 47.619 0.00 0.00 0.00 2.12
2094 5554 1.657094 GTCGTACAACCAACCGCATAG 59.343 52.381 0.00 0.00 0.00 2.23
2095 5555 1.712401 GTCGTACAACCAACCGCATA 58.288 50.000 0.00 0.00 0.00 3.14
2096 5556 1.286354 CGTCGTACAACCAACCGCAT 61.286 55.000 0.00 0.00 0.00 4.73
2097 5557 1.950130 CGTCGTACAACCAACCGCA 60.950 57.895 0.00 0.00 0.00 5.69
2098 5558 2.660612 CCGTCGTACAACCAACCGC 61.661 63.158 0.00 0.00 0.00 5.68
2099 5559 1.005294 CTCCGTCGTACAACCAACCG 61.005 60.000 0.00 0.00 0.00 4.44
2100 5560 1.287041 GCTCCGTCGTACAACCAACC 61.287 60.000 0.00 0.00 0.00 3.77
2101 5561 0.319297 AGCTCCGTCGTACAACCAAC 60.319 55.000 0.00 0.00 0.00 3.77
2102 5562 0.390124 AAGCTCCGTCGTACAACCAA 59.610 50.000 0.00 0.00 0.00 3.67
2103 5563 0.390124 AAAGCTCCGTCGTACAACCA 59.610 50.000 0.00 0.00 0.00 3.67
2104 5564 0.788391 CAAAGCTCCGTCGTACAACC 59.212 55.000 0.00 0.00 0.00 3.77
2105 5565 1.191647 CACAAAGCTCCGTCGTACAAC 59.808 52.381 0.00 0.00 0.00 3.32
2106 5566 1.067364 TCACAAAGCTCCGTCGTACAA 59.933 47.619 0.00 0.00 0.00 2.41
2107 5567 0.669619 TCACAAAGCTCCGTCGTACA 59.330 50.000 0.00 0.00 0.00 2.90
2108 5568 1.992170 ATCACAAAGCTCCGTCGTAC 58.008 50.000 0.00 0.00 0.00 3.67
2109 5569 4.380841 AATATCACAAAGCTCCGTCGTA 57.619 40.909 0.00 0.00 0.00 3.43
2110 5570 2.961526 ATATCACAAAGCTCCGTCGT 57.038 45.000 0.00 0.00 0.00 4.34
2111 5571 3.785505 GCAAATATCACAAAGCTCCGTCG 60.786 47.826 0.00 0.00 0.00 5.12
2112 5572 3.375299 AGCAAATATCACAAAGCTCCGTC 59.625 43.478 0.00 0.00 0.00 4.79
2113 5573 3.347216 AGCAAATATCACAAAGCTCCGT 58.653 40.909 0.00 0.00 0.00 4.69
2114 5574 4.100529 CAAGCAAATATCACAAAGCTCCG 58.899 43.478 0.00 0.00 0.00 4.63
2115 5575 5.124457 TCTCAAGCAAATATCACAAAGCTCC 59.876 40.000 0.00 0.00 0.00 4.70
2116 5576 6.026513 GTCTCAAGCAAATATCACAAAGCTC 58.973 40.000 0.00 0.00 0.00 4.09
2117 5577 5.105997 GGTCTCAAGCAAATATCACAAAGCT 60.106 40.000 0.00 0.00 0.00 3.74
2118 5578 5.098211 GGTCTCAAGCAAATATCACAAAGC 58.902 41.667 0.00 0.00 0.00 3.51
2119 5579 5.122239 TCGGTCTCAAGCAAATATCACAAAG 59.878 40.000 0.00 0.00 0.00 2.77
2120 5580 5.000591 TCGGTCTCAAGCAAATATCACAAA 58.999 37.500 0.00 0.00 0.00 2.83
2121 5581 4.574892 TCGGTCTCAAGCAAATATCACAA 58.425 39.130 0.00 0.00 0.00 3.33
2122 5582 4.200838 TCGGTCTCAAGCAAATATCACA 57.799 40.909 0.00 0.00 0.00 3.58
2123 5583 5.106712 TGTTTCGGTCTCAAGCAAATATCAC 60.107 40.000 0.00 0.00 0.00 3.06
2124 5584 5.000591 TGTTTCGGTCTCAAGCAAATATCA 58.999 37.500 0.00 0.00 0.00 2.15
2125 5585 5.545658 TGTTTCGGTCTCAAGCAAATATC 57.454 39.130 0.00 0.00 0.00 1.63
2126 5586 5.647658 TCATGTTTCGGTCTCAAGCAAATAT 59.352 36.000 0.00 0.00 0.00 1.28
2127 5587 5.000591 TCATGTTTCGGTCTCAAGCAAATA 58.999 37.500 0.00 0.00 0.00 1.40
2128 5588 3.820467 TCATGTTTCGGTCTCAAGCAAAT 59.180 39.130 0.00 0.00 0.00 2.32
2129 5589 3.210227 TCATGTTTCGGTCTCAAGCAAA 58.790 40.909 0.00 0.00 0.00 3.68
2130 5590 2.807967 CTCATGTTTCGGTCTCAAGCAA 59.192 45.455 0.00 0.00 0.00 3.91
2131 5591 2.416747 CTCATGTTTCGGTCTCAAGCA 58.583 47.619 0.00 0.00 0.00 3.91
2132 5592 1.734465 CCTCATGTTTCGGTCTCAAGC 59.266 52.381 0.00 0.00 0.00 4.01
2133 5593 3.319137 TCCTCATGTTTCGGTCTCAAG 57.681 47.619 0.00 0.00 0.00 3.02
2134 5594 3.762407 TTCCTCATGTTTCGGTCTCAA 57.238 42.857 0.00 0.00 0.00 3.02
2135 5595 3.071023 AGTTTCCTCATGTTTCGGTCTCA 59.929 43.478 0.00 0.00 0.00 3.27
2136 5596 3.665190 AGTTTCCTCATGTTTCGGTCTC 58.335 45.455 0.00 0.00 0.00 3.36
2137 5597 3.771577 AGTTTCCTCATGTTTCGGTCT 57.228 42.857 0.00 0.00 0.00 3.85
2138 5598 3.609409 GCAAGTTTCCTCATGTTTCGGTC 60.609 47.826 0.00 0.00 0.00 4.79
2139 5599 2.293399 GCAAGTTTCCTCATGTTTCGGT 59.707 45.455 0.00 0.00 0.00 4.69
2140 5600 2.351738 GGCAAGTTTCCTCATGTTTCGG 60.352 50.000 0.00 0.00 0.00 4.30
2141 5601 2.351738 GGGCAAGTTTCCTCATGTTTCG 60.352 50.000 0.00 0.00 0.00 3.46
2142 5602 2.029020 GGGGCAAGTTTCCTCATGTTTC 60.029 50.000 0.00 0.00 0.00 2.78
2143 5603 1.970640 GGGGCAAGTTTCCTCATGTTT 59.029 47.619 0.00 0.00 0.00 2.83
2144 5604 1.632589 GGGGCAAGTTTCCTCATGTT 58.367 50.000 0.00 0.00 0.00 2.71
2145 5605 0.251787 GGGGGCAAGTTTCCTCATGT 60.252 55.000 0.00 0.00 0.00 3.21
2146 5606 0.040204 AGGGGGCAAGTTTCCTCATG 59.960 55.000 0.00 0.00 0.00 3.07
2147 5607 0.786435 AAGGGGGCAAGTTTCCTCAT 59.214 50.000 0.00 0.00 0.00 2.90
2148 5608 0.560688 AAAGGGGGCAAGTTTCCTCA 59.439 50.000 0.00 0.00 0.00 3.86
2149 5609 1.344438 CAAAAGGGGGCAAGTTTCCTC 59.656 52.381 0.00 0.00 0.00 3.71
2150 5610 1.343985 ACAAAAGGGGGCAAGTTTCCT 60.344 47.619 0.00 0.00 0.00 3.36
2151 5611 1.070134 GACAAAAGGGGGCAAGTTTCC 59.930 52.381 0.00 0.00 0.00 3.13
2152 5612 1.760029 TGACAAAAGGGGGCAAGTTTC 59.240 47.619 0.00 0.00 0.00 2.78
2153 5613 1.762370 CTGACAAAAGGGGGCAAGTTT 59.238 47.619 0.00 0.00 0.00 2.66
2154 5614 1.413118 CTGACAAAAGGGGGCAAGTT 58.587 50.000 0.00 0.00 0.00 2.66
2155 5615 1.115326 GCTGACAAAAGGGGGCAAGT 61.115 55.000 0.00 0.00 0.00 3.16
2156 5616 0.829182 AGCTGACAAAAGGGGGCAAG 60.829 55.000 0.00 0.00 0.00 4.01
2157 5617 0.827507 GAGCTGACAAAAGGGGGCAA 60.828 55.000 0.00 0.00 0.00 4.52
2158 5618 1.228552 GAGCTGACAAAAGGGGGCA 60.229 57.895 0.00 0.00 0.00 5.36
2159 5619 1.979155 GGAGCTGACAAAAGGGGGC 60.979 63.158 0.00 0.00 0.00 5.80
2160 5620 0.991920 TAGGAGCTGACAAAAGGGGG 59.008 55.000 0.00 0.00 0.00 5.40
2161 5621 2.716217 CTTAGGAGCTGACAAAAGGGG 58.284 52.381 0.00 0.00 0.00 4.79
2162 5622 2.087646 GCTTAGGAGCTGACAAAAGGG 58.912 52.381 0.00 0.00 45.65 3.95
2174 5634 3.425162 AGTTCACCAAAGGCTTAGGAG 57.575 47.619 0.00 0.00 0.00 3.69
2175 5635 3.876309 AAGTTCACCAAAGGCTTAGGA 57.124 42.857 0.00 0.00 0.00 2.94
2176 5636 4.937201 AAAAGTTCACCAAAGGCTTAGG 57.063 40.909 0.00 0.00 0.00 2.69
2177 5637 6.015434 ACCATAAAAGTTCACCAAAGGCTTAG 60.015 38.462 0.00 0.00 0.00 2.18
2178 5638 5.836358 ACCATAAAAGTTCACCAAAGGCTTA 59.164 36.000 0.00 0.00 0.00 3.09
2179 5639 4.653801 ACCATAAAAGTTCACCAAAGGCTT 59.346 37.500 0.00 0.00 0.00 4.35
2180 5640 4.039124 CACCATAAAAGTTCACCAAAGGCT 59.961 41.667 0.00 0.00 0.00 4.58
2181 5641 4.202212 ACACCATAAAAGTTCACCAAAGGC 60.202 41.667 0.00 0.00 0.00 4.35
2182 5642 5.529581 ACACCATAAAAGTTCACCAAAGG 57.470 39.130 0.00 0.00 0.00 3.11
2183 5643 7.594758 CACATACACCATAAAAGTTCACCAAAG 59.405 37.037 0.00 0.00 0.00 2.77
2184 5644 7.285629 TCACATACACCATAAAAGTTCACCAAA 59.714 33.333 0.00 0.00 0.00 3.28
2185 5645 6.773200 TCACATACACCATAAAAGTTCACCAA 59.227 34.615 0.00 0.00 0.00 3.67
2186 5646 6.299922 TCACATACACCATAAAAGTTCACCA 58.700 36.000 0.00 0.00 0.00 4.17
2187 5647 6.811253 TCACATACACCATAAAAGTTCACC 57.189 37.500 0.00 0.00 0.00 4.02
2188 5648 8.039603 TCATCACATACACCATAAAAGTTCAC 57.960 34.615 0.00 0.00 0.00 3.18
2189 5649 8.628630 TTCATCACATACACCATAAAAGTTCA 57.371 30.769 0.00 0.00 0.00 3.18
2190 5650 9.906660 TTTTCATCACATACACCATAAAAGTTC 57.093 29.630 0.00 0.00 0.00 3.01
2192 5652 9.691362 GTTTTTCATCACATACACCATAAAAGT 57.309 29.630 0.00 0.00 0.00 2.66
2193 5653 9.912634 AGTTTTTCATCACATACACCATAAAAG 57.087 29.630 0.00 0.00 0.00 2.27
2198 5658 9.023962 ACATAAGTTTTTCATCACATACACCAT 57.976 29.630 0.00 0.00 0.00 3.55
2199 5659 8.402798 ACATAAGTTTTTCATCACATACACCA 57.597 30.769 0.00 0.00 0.00 4.17
2200 5660 9.341899 GAACATAAGTTTTTCATCACATACACC 57.658 33.333 0.00 0.00 38.30 4.16
2206 5666 9.734620 CTCAAAGAACATAAGTTTTTCATCACA 57.265 29.630 0.00 0.00 38.30 3.58
2207 5667 9.950680 TCTCAAAGAACATAAGTTTTTCATCAC 57.049 29.630 0.00 0.00 38.30 3.06
2208 5668 9.950680 GTCTCAAAGAACATAAGTTTTTCATCA 57.049 29.630 0.00 0.00 38.30 3.07
2209 5669 9.950680 TGTCTCAAAGAACATAAGTTTTTCATC 57.049 29.630 0.00 0.00 38.30 2.92
2210 5670 9.736023 GTGTCTCAAAGAACATAAGTTTTTCAT 57.264 29.630 0.00 0.00 38.30 2.57
2211 5671 8.188139 GGTGTCTCAAAGAACATAAGTTTTTCA 58.812 33.333 0.00 0.00 38.30 2.69
2212 5672 8.188139 TGGTGTCTCAAAGAACATAAGTTTTTC 58.812 33.333 0.00 0.00 38.30 2.29
2213 5673 8.062065 TGGTGTCTCAAAGAACATAAGTTTTT 57.938 30.769 0.00 0.00 38.30 1.94
2214 5674 7.639113 TGGTGTCTCAAAGAACATAAGTTTT 57.361 32.000 0.00 0.00 38.30 2.43
2215 5675 7.480810 GTTGGTGTCTCAAAGAACATAAGTTT 58.519 34.615 0.00 0.00 38.30 2.66
2216 5676 6.238374 CGTTGGTGTCTCAAAGAACATAAGTT 60.238 38.462 0.00 0.00 41.64 2.66
2217 5677 5.236478 CGTTGGTGTCTCAAAGAACATAAGT 59.764 40.000 0.00 0.00 0.00 2.24
2218 5678 5.465390 TCGTTGGTGTCTCAAAGAACATAAG 59.535 40.000 0.00 0.00 33.54 1.73
2219 5679 5.361427 TCGTTGGTGTCTCAAAGAACATAA 58.639 37.500 0.00 0.00 33.54 1.90
2220 5680 4.951254 TCGTTGGTGTCTCAAAGAACATA 58.049 39.130 0.00 0.00 33.54 2.29
2221 5681 3.804036 TCGTTGGTGTCTCAAAGAACAT 58.196 40.909 0.00 0.00 33.54 2.71
2222 5682 3.254470 TCGTTGGTGTCTCAAAGAACA 57.746 42.857 0.00 0.00 33.54 3.18
2223 5683 3.807622 TCATCGTTGGTGTCTCAAAGAAC 59.192 43.478 0.00 0.00 38.28 3.01
2224 5684 4.058124 CTCATCGTTGGTGTCTCAAAGAA 58.942 43.478 0.00 0.00 38.28 2.52
2225 5685 3.320826 TCTCATCGTTGGTGTCTCAAAGA 59.679 43.478 0.00 0.00 38.89 2.52
2226 5686 3.653344 TCTCATCGTTGGTGTCTCAAAG 58.347 45.455 0.00 0.00 0.00 2.77
2227 5687 3.744238 TCTCATCGTTGGTGTCTCAAA 57.256 42.857 0.00 0.00 0.00 2.69
2228 5688 3.511540 AGATCTCATCGTTGGTGTCTCAA 59.488 43.478 0.00 0.00 0.00 3.02
2229 5689 3.092301 AGATCTCATCGTTGGTGTCTCA 58.908 45.455 0.00 0.00 0.00 3.27
2230 5690 3.791973 AGATCTCATCGTTGGTGTCTC 57.208 47.619 0.00 0.00 0.00 3.36
2231 5691 3.259374 ACAAGATCTCATCGTTGGTGTCT 59.741 43.478 0.00 0.00 0.00 3.41
2232 5692 3.589988 ACAAGATCTCATCGTTGGTGTC 58.410 45.455 0.00 0.00 0.00 3.67
2233 5693 3.685139 ACAAGATCTCATCGTTGGTGT 57.315 42.857 0.00 0.00 0.00 4.16
2234 5694 4.800993 GTCTACAAGATCTCATCGTTGGTG 59.199 45.833 0.00 0.00 0.00 4.17
2235 5695 4.142138 GGTCTACAAGATCTCATCGTTGGT 60.142 45.833 0.00 0.00 0.00 3.67
2236 5696 4.142160 TGGTCTACAAGATCTCATCGTTGG 60.142 45.833 0.00 0.00 0.00 3.77
2237 5697 4.998788 TGGTCTACAAGATCTCATCGTTG 58.001 43.478 0.00 0.00 0.00 4.10
2238 5698 5.452496 CCATGGTCTACAAGATCTCATCGTT 60.452 44.000 2.57 0.00 0.00 3.85
2239 5699 4.038522 CCATGGTCTACAAGATCTCATCGT 59.961 45.833 2.57 0.00 0.00 3.73
2240 5700 4.554292 CCATGGTCTACAAGATCTCATCG 58.446 47.826 2.57 0.00 0.00 3.84
2241 5701 4.040217 AGCCATGGTCTACAAGATCTCATC 59.960 45.833 14.67 0.00 0.00 2.92
2242 5702 3.972638 AGCCATGGTCTACAAGATCTCAT 59.027 43.478 14.67 0.00 0.00 2.90
2243 5703 3.133542 CAGCCATGGTCTACAAGATCTCA 59.866 47.826 14.67 0.00 0.00 3.27
2244 5704 3.494048 CCAGCCATGGTCTACAAGATCTC 60.494 52.174 14.67 0.00 42.17 2.75
2245 5705 2.437281 CCAGCCATGGTCTACAAGATCT 59.563 50.000 14.67 0.00 42.17 2.75
2246 5706 2.843701 CCAGCCATGGTCTACAAGATC 58.156 52.381 14.67 0.00 42.17 2.75
2258 5718 2.877168 GTTCTAGCATTCTCCAGCCATG 59.123 50.000 0.00 0.00 0.00 3.66
2259 5719 2.158696 GGTTCTAGCATTCTCCAGCCAT 60.159 50.000 0.00 0.00 0.00 4.40
2260 5720 1.210478 GGTTCTAGCATTCTCCAGCCA 59.790 52.381 0.00 0.00 0.00 4.75
2261 5721 1.808133 CGGTTCTAGCATTCTCCAGCC 60.808 57.143 0.00 0.00 0.00 4.85
2262 5722 1.137086 TCGGTTCTAGCATTCTCCAGC 59.863 52.381 0.00 0.00 0.00 4.85
2263 5723 2.166459 TGTCGGTTCTAGCATTCTCCAG 59.834 50.000 0.00 0.00 0.00 3.86
2264 5724 2.176045 TGTCGGTTCTAGCATTCTCCA 58.824 47.619 0.00 0.00 0.00 3.86
2265 5725 2.961526 TGTCGGTTCTAGCATTCTCC 57.038 50.000 0.00 0.00 0.00 3.71
2266 5726 4.046938 TGATGTCGGTTCTAGCATTCTC 57.953 45.455 0.00 0.00 0.00 2.87
2267 5727 4.679373 ATGATGTCGGTTCTAGCATTCT 57.321 40.909 0.00 0.00 0.00 2.40
2268 5728 4.084849 CGAATGATGTCGGTTCTAGCATTC 60.085 45.833 0.00 0.00 37.37 2.67
2269 5729 3.804325 CGAATGATGTCGGTTCTAGCATT 59.196 43.478 0.00 0.00 37.37 3.56
2270 5730 3.068165 TCGAATGATGTCGGTTCTAGCAT 59.932 43.478 0.00 0.00 41.43 3.79
2271 5731 2.425668 TCGAATGATGTCGGTTCTAGCA 59.574 45.455 0.00 0.00 41.43 3.49
2272 5732 3.046390 CTCGAATGATGTCGGTTCTAGC 58.954 50.000 0.00 0.00 41.43 3.42
2273 5733 4.038361 CACTCGAATGATGTCGGTTCTAG 58.962 47.826 0.00 0.00 41.43 2.43
2274 5734 3.692593 TCACTCGAATGATGTCGGTTCTA 59.307 43.478 0.00 0.00 41.43 2.10
2275 5735 2.492088 TCACTCGAATGATGTCGGTTCT 59.508 45.455 0.00 0.00 41.43 3.01
2276 5736 2.599082 GTCACTCGAATGATGTCGGTTC 59.401 50.000 0.00 0.00 41.43 3.62
2277 5737 2.231478 AGTCACTCGAATGATGTCGGTT 59.769 45.455 0.00 0.00 41.43 4.44
2278 5738 1.819288 AGTCACTCGAATGATGTCGGT 59.181 47.619 0.00 0.00 41.43 4.69
2279 5739 2.568696 AGTCACTCGAATGATGTCGG 57.431 50.000 0.00 0.00 41.43 4.79
2280 5740 4.038361 CCTTAGTCACTCGAATGATGTCG 58.962 47.826 0.00 0.00 42.48 4.35
2281 5741 4.363999 CCCTTAGTCACTCGAATGATGTC 58.636 47.826 0.00 0.00 0.00 3.06
2282 5742 3.430929 GCCCTTAGTCACTCGAATGATGT 60.431 47.826 0.00 0.00 0.00 3.06
2283 5743 3.126831 GCCCTTAGTCACTCGAATGATG 58.873 50.000 0.00 0.00 0.00 3.07
2284 5744 3.034635 AGCCCTTAGTCACTCGAATGAT 58.965 45.455 0.00 0.00 0.00 2.45
2285 5745 2.427453 GAGCCCTTAGTCACTCGAATGA 59.573 50.000 0.00 0.00 0.00 2.57
2286 5746 2.428890 AGAGCCCTTAGTCACTCGAATG 59.571 50.000 0.00 0.00 34.31 2.67
2287 5747 2.691011 GAGAGCCCTTAGTCACTCGAAT 59.309 50.000 0.00 0.00 34.31 3.34
2288 5748 2.093106 GAGAGCCCTTAGTCACTCGAA 58.907 52.381 0.00 0.00 34.31 3.71
2289 5749 1.282447 AGAGAGCCCTTAGTCACTCGA 59.718 52.381 0.00 0.00 34.31 4.04
2290 5750 1.757682 AGAGAGCCCTTAGTCACTCG 58.242 55.000 0.00 0.00 34.31 4.18
2291 5751 3.428316 CGAAAGAGAGCCCTTAGTCACTC 60.428 52.174 0.00 0.00 0.00 3.51
2292 5752 2.494073 CGAAAGAGAGCCCTTAGTCACT 59.506 50.000 0.00 0.00 0.00 3.41
2293 5753 2.417515 CCGAAAGAGAGCCCTTAGTCAC 60.418 54.545 0.00 0.00 0.00 3.67
2294 5754 1.825474 CCGAAAGAGAGCCCTTAGTCA 59.175 52.381 0.00 0.00 0.00 3.41
2295 5755 2.100087 CTCCGAAAGAGAGCCCTTAGTC 59.900 54.545 0.00 0.00 46.50 2.59
2296 5756 2.104170 CTCCGAAAGAGAGCCCTTAGT 58.896 52.381 0.00 0.00 46.50 2.24
2297 5757 1.410882 CCTCCGAAAGAGAGCCCTTAG 59.589 57.143 0.00 0.00 46.50 2.18
2298 5758 1.006758 TCCTCCGAAAGAGAGCCCTTA 59.993 52.381 0.00 0.00 46.50 2.69
2299 5759 0.252284 TCCTCCGAAAGAGAGCCCTT 60.252 55.000 0.00 0.00 46.50 3.95
2300 5760 0.973496 GTCCTCCGAAAGAGAGCCCT 60.973 60.000 0.00 0.00 46.50 5.19
2301 5761 1.518302 GTCCTCCGAAAGAGAGCCC 59.482 63.158 0.00 0.00 46.50 5.19
2302 5762 1.258445 TGGTCCTCCGAAAGAGAGCC 61.258 60.000 0.00 0.00 46.50 4.70
2303 5763 0.608640 TTGGTCCTCCGAAAGAGAGC 59.391 55.000 0.00 0.00 46.50 4.09
2304 5764 1.896465 ACTTGGTCCTCCGAAAGAGAG 59.104 52.381 0.00 0.00 46.50 3.20
2305 5765 2.011122 ACTTGGTCCTCCGAAAGAGA 57.989 50.000 0.00 0.00 46.50 3.10
2306 5766 2.841442 AACTTGGTCCTCCGAAAGAG 57.159 50.000 0.00 0.00 42.83 2.85
2307 5767 4.530946 AGAATAACTTGGTCCTCCGAAAGA 59.469 41.667 0.00 0.00 36.30 2.52
2308 5768 4.631813 CAGAATAACTTGGTCCTCCGAAAG 59.368 45.833 0.00 0.00 36.30 2.62
2309 5769 4.575885 CAGAATAACTTGGTCCTCCGAAA 58.424 43.478 0.00 0.00 36.30 3.46
2310 5770 3.618997 GCAGAATAACTTGGTCCTCCGAA 60.619 47.826 0.00 0.00 36.30 4.30
2311 5771 2.093658 GCAGAATAACTTGGTCCTCCGA 60.094 50.000 0.00 0.00 36.30 4.55
2312 5772 2.280628 GCAGAATAACTTGGTCCTCCG 58.719 52.381 0.00 0.00 36.30 4.63
2313 5773 3.350219 TGCAGAATAACTTGGTCCTCC 57.650 47.619 0.00 0.00 0.00 4.30
2314 5774 4.327680 AGTTGCAGAATAACTTGGTCCTC 58.672 43.478 0.00 0.00 34.91 3.71
2315 5775 4.373156 AGTTGCAGAATAACTTGGTCCT 57.627 40.909 0.00 0.00 34.91 3.85
2316 5776 6.430000 TCTTAAGTTGCAGAATAACTTGGTCC 59.570 38.462 10.33 0.00 45.22 4.46
2317 5777 7.387948 TCTCTTAAGTTGCAGAATAACTTGGTC 59.612 37.037 10.33 0.00 45.22 4.02
2318 5778 7.224297 TCTCTTAAGTTGCAGAATAACTTGGT 58.776 34.615 10.33 0.00 45.22 3.67
2319 5779 7.672983 TCTCTTAAGTTGCAGAATAACTTGG 57.327 36.000 10.33 4.51 45.22 3.61
2320 5780 9.552114 CAATCTCTTAAGTTGCAGAATAACTTG 57.448 33.333 10.33 0.00 45.22 3.16
2321 5781 8.734386 CCAATCTCTTAAGTTGCAGAATAACTT 58.266 33.333 1.63 6.04 46.69 2.66
2322 5782 7.885399 ACCAATCTCTTAAGTTGCAGAATAACT 59.115 33.333 1.63 0.00 39.92 2.24
2323 5783 8.045176 ACCAATCTCTTAAGTTGCAGAATAAC 57.955 34.615 1.63 0.00 0.00 1.89
2324 5784 8.103305 AGACCAATCTCTTAAGTTGCAGAATAA 58.897 33.333 1.63 0.00 0.00 1.40
2325 5785 7.624549 AGACCAATCTCTTAAGTTGCAGAATA 58.375 34.615 1.63 0.00 0.00 1.75
2326 5786 6.479884 AGACCAATCTCTTAAGTTGCAGAAT 58.520 36.000 1.63 0.00 0.00 2.40
2327 5787 5.869579 AGACCAATCTCTTAAGTTGCAGAA 58.130 37.500 1.63 0.00 0.00 3.02
2328 5788 5.482908 GAGACCAATCTCTTAAGTTGCAGA 58.517 41.667 1.63 0.00 46.93 4.26
2329 5789 5.793026 GAGACCAATCTCTTAAGTTGCAG 57.207 43.478 1.63 0.00 46.93 4.41
2341 5801 5.483583 ACTGAAAAGAGCTAGAGACCAATCT 59.516 40.000 0.00 0.00 38.15 2.40
2342 5802 5.580297 CACTGAAAAGAGCTAGAGACCAATC 59.420 44.000 0.00 0.00 0.00 2.67
2343 5803 5.486526 CACTGAAAAGAGCTAGAGACCAAT 58.513 41.667 0.00 0.00 0.00 3.16
2344 5804 4.262635 CCACTGAAAAGAGCTAGAGACCAA 60.263 45.833 0.00 0.00 0.00 3.67
2345 5805 3.259374 CCACTGAAAAGAGCTAGAGACCA 59.741 47.826 0.00 0.00 0.00 4.02
2346 5806 3.368948 CCCACTGAAAAGAGCTAGAGACC 60.369 52.174 0.00 0.00 0.00 3.85
2347 5807 3.855858 CCCACTGAAAAGAGCTAGAGAC 58.144 50.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.