Multiple sequence alignment - TraesCS7A01G392300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G392300 chr7A 100.000 2390 0 0 1 2390 568696718 568694329 0.000000e+00 4414.0
1 TraesCS7A01G392300 chr7A 86.386 830 52 35 586 1364 569112994 569112175 0.000000e+00 850.0
2 TraesCS7A01G392300 chr7A 87.722 562 50 14 811 1364 568129640 568130190 2.590000e-179 638.0
3 TraesCS7A01G392300 chr7A 89.323 384 33 7 975 1358 568579791 568580166 2.150000e-130 475.0
4 TraesCS7A01G392300 chr7A 90.000 70 4 1 180 246 568578434 568578503 1.180000e-13 87.9
5 TraesCS7A01G392300 chr7A 91.667 60 4 1 586 645 568579241 568579299 5.480000e-12 82.4
6 TraesCS7A01G392300 chr7A 96.875 32 1 0 389 420 568129352 568129383 1.000000e-03 54.7
7 TraesCS7A01G392300 chr7A 88.889 45 4 1 361 404 568578690 568578734 1.000000e-03 54.7
8 TraesCS7A01G392300 chr7D 86.220 1045 64 32 650 1652 501610394 501609388 0.000000e+00 1059.0
9 TraesCS7A01G392300 chr7D 89.510 734 36 8 1668 2390 501609405 501608702 0.000000e+00 891.0
10 TraesCS7A01G392300 chr7D 86.340 754 58 19 626 1358 501778256 501777527 0.000000e+00 780.0
11 TraesCS7A01G392300 chr7D 87.069 696 40 24 690 1364 501599639 501600305 0.000000e+00 741.0
12 TraesCS7A01G392300 chr7D 79.070 258 24 16 175 404 501787551 501787296 1.480000e-32 150.0
13 TraesCS7A01G392300 chr7D 77.612 268 26 17 390 646 501611571 501611327 5.360000e-27 132.0
14 TraesCS7A01G392300 chr7D 82.635 167 8 10 1488 1652 501509380 501509527 6.930000e-26 128.0
15 TraesCS7A01G392300 chr7D 90.426 94 6 2 390 480 501508215 501508308 1.160000e-23 121.0
16 TraesCS7A01G392300 chr7D 84.466 103 4 3 182 278 501597480 501597576 9.100000e-15 91.6
17 TraesCS7A01G392300 chr7B 84.636 1126 75 33 581 1652 531222813 531221732 0.000000e+00 1031.0
18 TraesCS7A01G392300 chr7B 84.559 680 36 32 710 1364 531179848 531180483 5.650000e-171 610.0
19 TraesCS7A01G392300 chr7B 90.414 459 21 8 1939 2390 531221506 531221064 1.230000e-162 582.0
20 TraesCS7A01G392300 chr7B 77.129 1010 123 64 700 1652 530869581 530870539 9.930000e-134 486.0
21 TraesCS7A01G392300 chr7B 87.281 228 18 9 1668 1886 531221749 531221524 1.420000e-62 250.0
22 TraesCS7A01G392300 chr7B 82.906 234 23 8 175 404 531231422 531231202 6.740000e-46 195.0
23 TraesCS7A01G392300 chr7B 98.214 56 1 0 390 445 531179600 531179655 5.440000e-17 99.0
24 TraesCS7A01G392300 chr7B 100.000 38 0 0 609 646 530869502 530869539 1.190000e-08 71.3
25 TraesCS7A01G392300 chr3A 93.902 164 6 3 1 161 731029352 731029514 6.600000e-61 244.0
26 TraesCS7A01G392300 chrUn 93.293 164 7 3 1 161 212973183 212973021 3.070000e-59 239.0
27 TraesCS7A01G392300 chr6A 93.293 164 7 3 1 161 197578941 197579103 3.070000e-59 239.0
28 TraesCS7A01G392300 chr6A 93.293 164 7 3 1 161 428061070 428061232 3.070000e-59 239.0
29 TraesCS7A01G392300 chr6A 93.293 164 7 3 1 161 542792000 542791838 3.070000e-59 239.0
30 TraesCS7A01G392300 chr4A 93.293 164 7 3 1 161 99137844 99138006 3.070000e-59 239.0
31 TraesCS7A01G392300 chr4A 93.293 164 7 3 1 161 99449277 99449439 3.070000e-59 239.0
32 TraesCS7A01G392300 chr1A 93.293 164 7 3 1 161 119267989 119268151 3.070000e-59 239.0
33 TraesCS7A01G392300 chr1A 93.293 164 7 3 1 161 259436710 259436548 3.070000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G392300 chr7A 568694329 568696718 2389 True 4414.00 4414 100.000000 1 2390 1 chr7A.!!$R1 2389
1 TraesCS7A01G392300 chr7A 569112175 569112994 819 True 850.00 850 86.386000 586 1364 1 chr7A.!!$R2 778
2 TraesCS7A01G392300 chr7A 568129352 568130190 838 False 346.35 638 92.298500 389 1364 2 chr7A.!!$F1 975
3 TraesCS7A01G392300 chr7D 501777527 501778256 729 True 780.00 780 86.340000 626 1358 1 chr7D.!!$R1 732
4 TraesCS7A01G392300 chr7D 501608702 501611571 2869 True 694.00 1059 84.447333 390 2390 3 chr7D.!!$R3 2000
5 TraesCS7A01G392300 chr7D 501597480 501600305 2825 False 416.30 741 85.767500 182 1364 2 chr7D.!!$F2 1182
6 TraesCS7A01G392300 chr7B 531221064 531222813 1749 True 621.00 1031 87.443667 581 2390 3 chr7B.!!$R2 1809
7 TraesCS7A01G392300 chr7B 531179600 531180483 883 False 354.50 610 91.386500 390 1364 2 chr7B.!!$F2 974
8 TraesCS7A01G392300 chr7B 530869502 530870539 1037 False 278.65 486 88.564500 609 1652 2 chr7B.!!$F1 1043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 304 0.036875 CCTCTTCTCCCACCAACACC 59.963 60.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 4645 0.101399 CGGTCTCCCAGAATGACGAG 59.899 60.0 0.0 0.0 39.69 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.761689 ACATTATAGATTCATTTTGCTTTGGGT 58.238 29.630 0.00 0.00 0.00 4.51
33 34 9.252962 CATTATAGATTCATTTTGCTTTGGGTC 57.747 33.333 0.00 0.00 0.00 4.46
34 35 6.855763 ATAGATTCATTTTGCTTTGGGTCA 57.144 33.333 0.00 0.00 0.00 4.02
35 36 4.886579 AGATTCATTTTGCTTTGGGTCAC 58.113 39.130 0.00 0.00 0.00 3.67
36 37 2.791383 TCATTTTGCTTTGGGTCACG 57.209 45.000 0.00 0.00 0.00 4.35
37 38 2.028130 TCATTTTGCTTTGGGTCACGT 58.972 42.857 0.00 0.00 0.00 4.49
38 39 2.428890 TCATTTTGCTTTGGGTCACGTT 59.571 40.909 0.00 0.00 0.00 3.99
39 40 3.632604 TCATTTTGCTTTGGGTCACGTTA 59.367 39.130 0.00 0.00 0.00 3.18
40 41 4.279671 TCATTTTGCTTTGGGTCACGTTAT 59.720 37.500 0.00 0.00 0.00 1.89
41 42 3.634568 TTTGCTTTGGGTCACGTTATG 57.365 42.857 0.00 0.00 0.00 1.90
42 43 2.264005 TGCTTTGGGTCACGTTATGT 57.736 45.000 0.00 0.00 0.00 2.29
43 44 2.577700 TGCTTTGGGTCACGTTATGTT 58.422 42.857 0.00 0.00 0.00 2.71
44 45 3.741249 TGCTTTGGGTCACGTTATGTTA 58.259 40.909 0.00 0.00 0.00 2.41
45 46 4.328536 TGCTTTGGGTCACGTTATGTTAT 58.671 39.130 0.00 0.00 0.00 1.89
46 47 5.489249 TGCTTTGGGTCACGTTATGTTATA 58.511 37.500 0.00 0.00 0.00 0.98
47 48 5.583061 TGCTTTGGGTCACGTTATGTTATAG 59.417 40.000 0.00 0.00 0.00 1.31
48 49 5.583457 GCTTTGGGTCACGTTATGTTATAGT 59.417 40.000 0.00 0.00 0.00 2.12
49 50 6.757947 GCTTTGGGTCACGTTATGTTATAGTA 59.242 38.462 0.00 0.00 0.00 1.82
50 51 7.278424 GCTTTGGGTCACGTTATGTTATAGTAA 59.722 37.037 0.00 0.00 0.00 2.24
51 52 8.477984 TTTGGGTCACGTTATGTTATAGTAAC 57.522 34.615 0.00 0.00 0.00 2.50
52 53 7.167924 TGGGTCACGTTATGTTATAGTAACA 57.832 36.000 5.15 5.15 31.83 2.41
53 54 7.784037 TGGGTCACGTTATGTTATAGTAACAT 58.216 34.615 16.71 16.71 42.82 2.71
54 55 8.911965 TGGGTCACGTTATGTTATAGTAACATA 58.088 33.333 15.08 15.08 40.87 2.29
55 56 9.918630 GGGTCACGTTATGTTATAGTAACATAT 57.081 33.333 18.14 6.18 41.23 1.78
80 81 6.611613 ATGTTACTCCAAACATCTCTCTCA 57.388 37.500 0.00 0.00 44.79 3.27
81 82 6.611613 TGTTACTCCAAACATCTCTCTCAT 57.388 37.500 0.00 0.00 34.50 2.90
82 83 7.009179 TGTTACTCCAAACATCTCTCTCATT 57.991 36.000 0.00 0.00 34.50 2.57
83 84 8.134202 TGTTACTCCAAACATCTCTCTCATTA 57.866 34.615 0.00 0.00 34.50 1.90
84 85 8.593679 TGTTACTCCAAACATCTCTCTCATTAA 58.406 33.333 0.00 0.00 34.50 1.40
85 86 8.874816 GTTACTCCAAACATCTCTCTCATTAAC 58.125 37.037 0.00 0.00 0.00 2.01
86 87 7.251321 ACTCCAAACATCTCTCTCATTAACT 57.749 36.000 0.00 0.00 0.00 2.24
87 88 8.367660 ACTCCAAACATCTCTCTCATTAACTA 57.632 34.615 0.00 0.00 0.00 2.24
88 89 8.986991 ACTCCAAACATCTCTCTCATTAACTAT 58.013 33.333 0.00 0.00 0.00 2.12
93 94 9.717942 AAACATCTCTCTCATTAACTATATGCC 57.282 33.333 0.00 0.00 0.00 4.40
94 95 8.427902 ACATCTCTCTCATTAACTATATGCCA 57.572 34.615 0.00 0.00 0.00 4.92
95 96 8.310382 ACATCTCTCTCATTAACTATATGCCAC 58.690 37.037 0.00 0.00 0.00 5.01
96 97 7.839680 TCTCTCTCATTAACTATATGCCACA 57.160 36.000 0.00 0.00 0.00 4.17
97 98 8.427902 TCTCTCTCATTAACTATATGCCACAT 57.572 34.615 0.00 0.00 0.00 3.21
98 99 9.533831 TCTCTCTCATTAACTATATGCCACATA 57.466 33.333 0.00 0.00 0.00 2.29
110 111 9.801873 ACTATATGCCACATAAACAAATTTGTC 57.198 29.630 23.47 9.48 41.31 3.18
113 114 6.841443 TGCCACATAAACAAATTTGTCTTG 57.159 33.333 23.47 20.67 41.31 3.02
114 115 6.577103 TGCCACATAAACAAATTTGTCTTGA 58.423 32.000 23.47 10.00 41.31 3.02
115 116 7.215789 TGCCACATAAACAAATTTGTCTTGAT 58.784 30.769 23.47 11.68 41.31 2.57
116 117 8.363390 TGCCACATAAACAAATTTGTCTTGATA 58.637 29.630 23.47 12.16 41.31 2.15
117 118 9.369904 GCCACATAAACAAATTTGTCTTGATAT 57.630 29.630 23.47 13.60 41.31 1.63
120 121 9.075519 ACATAAACAAATTTGTCTTGATATGCG 57.924 29.630 23.47 9.31 41.31 4.73
121 122 6.393720 AAACAAATTTGTCTTGATATGCGC 57.606 33.333 23.47 0.00 41.31 6.09
122 123 5.314923 ACAAATTTGTCTTGATATGCGCT 57.685 34.783 18.13 0.00 36.50 5.92
123 124 6.435430 ACAAATTTGTCTTGATATGCGCTA 57.565 33.333 18.13 0.00 36.50 4.26
124 125 7.031226 ACAAATTTGTCTTGATATGCGCTAT 57.969 32.000 18.13 3.84 36.50 2.97
125 126 6.914215 ACAAATTTGTCTTGATATGCGCTATG 59.086 34.615 18.13 0.00 36.50 2.23
126 127 6.624352 AATTTGTCTTGATATGCGCTATGT 57.376 33.333 9.73 0.00 0.00 2.29
127 128 6.624352 ATTTGTCTTGATATGCGCTATGTT 57.376 33.333 9.73 0.00 0.00 2.71
128 129 7.728847 ATTTGTCTTGATATGCGCTATGTTA 57.271 32.000 9.73 0.00 0.00 2.41
129 130 6.525121 TTGTCTTGATATGCGCTATGTTAC 57.475 37.500 9.73 0.00 0.00 2.50
130 131 5.842907 TGTCTTGATATGCGCTATGTTACT 58.157 37.500 9.73 0.00 0.00 2.24
131 132 6.280643 TGTCTTGATATGCGCTATGTTACTT 58.719 36.000 9.73 0.00 0.00 2.24
132 133 6.200854 TGTCTTGATATGCGCTATGTTACTTG 59.799 38.462 9.73 0.00 0.00 3.16
133 134 4.990543 TGATATGCGCTATGTTACTTGC 57.009 40.909 9.73 0.00 0.00 4.01
134 135 4.631131 TGATATGCGCTATGTTACTTGCT 58.369 39.130 9.73 0.00 0.00 3.91
135 136 5.778862 TGATATGCGCTATGTTACTTGCTA 58.221 37.500 9.73 0.00 0.00 3.49
136 137 6.220201 TGATATGCGCTATGTTACTTGCTAA 58.780 36.000 9.73 0.00 0.00 3.09
137 138 6.366061 TGATATGCGCTATGTTACTTGCTAAG 59.634 38.462 9.73 0.00 0.00 2.18
138 139 3.857052 TGCGCTATGTTACTTGCTAAGT 58.143 40.909 9.73 6.74 45.40 2.24
139 140 4.250464 TGCGCTATGTTACTTGCTAAGTT 58.750 39.130 9.73 0.00 42.81 2.66
140 141 4.693566 TGCGCTATGTTACTTGCTAAGTTT 59.306 37.500 9.73 0.00 42.81 2.66
141 142 5.870433 TGCGCTATGTTACTTGCTAAGTTTA 59.130 36.000 9.73 0.00 42.81 2.01
142 143 6.183324 GCGCTATGTTACTTGCTAAGTTTAC 58.817 40.000 0.00 6.84 42.81 2.01
143 144 6.035758 GCGCTATGTTACTTGCTAAGTTTACT 59.964 38.462 0.00 0.00 42.81 2.24
144 145 7.610509 CGCTATGTTACTTGCTAAGTTTACTC 58.389 38.462 6.82 0.00 42.81 2.59
145 146 7.254017 CGCTATGTTACTTGCTAAGTTTACTCC 60.254 40.741 6.82 0.00 42.81 3.85
146 147 7.011202 GCTATGTTACTTGCTAAGTTTACTCCC 59.989 40.741 6.82 0.00 42.81 4.30
147 148 6.177310 TGTTACTTGCTAAGTTTACTCCCA 57.823 37.500 6.82 0.00 42.81 4.37
148 149 5.993441 TGTTACTTGCTAAGTTTACTCCCAC 59.007 40.000 6.82 0.00 42.81 4.61
149 150 4.976540 ACTTGCTAAGTTTACTCCCACT 57.023 40.909 0.00 0.00 39.04 4.00
150 151 7.015487 TGTTACTTGCTAAGTTTACTCCCACTA 59.985 37.037 6.82 0.00 42.81 2.74
151 152 6.622427 ACTTGCTAAGTTTACTCCCACTAT 57.378 37.500 0.00 0.00 39.04 2.12
152 153 6.407202 ACTTGCTAAGTTTACTCCCACTATG 58.593 40.000 0.00 0.00 39.04 2.23
153 154 6.212791 ACTTGCTAAGTTTACTCCCACTATGA 59.787 38.462 0.00 0.00 39.04 2.15
154 155 5.974108 TGCTAAGTTTACTCCCACTATGAC 58.026 41.667 0.00 0.00 0.00 3.06
155 156 5.105064 TGCTAAGTTTACTCCCACTATGACC 60.105 44.000 0.00 0.00 0.00 4.02
156 157 5.105064 GCTAAGTTTACTCCCACTATGACCA 60.105 44.000 0.00 0.00 0.00 4.02
157 158 5.422214 AAGTTTACTCCCACTATGACCAG 57.578 43.478 0.00 0.00 0.00 4.00
158 159 3.197983 AGTTTACTCCCACTATGACCAGC 59.802 47.826 0.00 0.00 0.00 4.85
159 160 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
160 161 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.00 0.00 0.00 4.58
161 162 0.467384 CTCCCACTATGACCAGCCTG 59.533 60.000 0.00 0.00 0.00 4.85
162 163 0.042581 TCCCACTATGACCAGCCTGA 59.957 55.000 0.00 0.00 0.00 3.86
163 164 0.467384 CCCACTATGACCAGCCTGAG 59.533 60.000 0.00 0.00 0.00 3.35
164 165 1.489481 CCACTATGACCAGCCTGAGA 58.511 55.000 0.00 0.00 0.00 3.27
165 166 1.411977 CCACTATGACCAGCCTGAGAG 59.588 57.143 0.00 0.00 0.00 3.20
166 167 2.382882 CACTATGACCAGCCTGAGAGA 58.617 52.381 0.00 0.00 0.00 3.10
167 168 2.361757 CACTATGACCAGCCTGAGAGAG 59.638 54.545 0.00 0.00 0.00 3.20
168 169 2.243478 ACTATGACCAGCCTGAGAGAGA 59.757 50.000 0.00 0.00 0.00 3.10
169 170 1.484038 ATGACCAGCCTGAGAGAGAC 58.516 55.000 0.00 0.00 0.00 3.36
170 171 0.962855 TGACCAGCCTGAGAGAGACG 60.963 60.000 0.00 0.00 0.00 4.18
171 172 2.278182 GACCAGCCTGAGAGAGACGC 62.278 65.000 0.00 0.00 0.00 5.19
172 173 2.493973 CAGCCTGAGAGAGACGCC 59.506 66.667 0.00 0.00 0.00 5.68
173 174 2.051518 CAGCCTGAGAGAGACGCCT 61.052 63.158 0.00 0.00 0.00 5.52
174 175 2.051518 AGCCTGAGAGAGACGCCTG 61.052 63.158 0.00 0.00 0.00 4.85
175 176 2.049185 GCCTGAGAGAGACGCCTGA 61.049 63.158 0.00 0.00 0.00 3.86
176 177 2.003658 GCCTGAGAGAGACGCCTGAG 62.004 65.000 0.00 0.00 0.00 3.35
177 178 0.393673 CCTGAGAGAGACGCCTGAGA 60.394 60.000 0.00 0.00 0.00 3.27
178 179 1.016627 CTGAGAGAGACGCCTGAGAG 58.983 60.000 0.00 0.00 0.00 3.20
179 180 0.615850 TGAGAGAGACGCCTGAGAGA 59.384 55.000 0.00 0.00 0.00 3.10
180 181 1.299541 GAGAGAGACGCCTGAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
196 197 2.159099 AGAGAGACGCGCATTGGAATTA 60.159 45.455 5.73 0.00 0.00 1.40
204 205 1.474320 CGCATTGGAATTACCCGGAGA 60.474 52.381 0.73 0.00 38.00 3.71
210 211 4.950205 TGGAATTACCCGGAGAGTATTC 57.050 45.455 0.73 4.69 38.00 1.75
234 241 0.951040 CCAACGGTCAAGACAGCTCC 60.951 60.000 2.29 0.00 0.00 4.70
237 244 1.178276 ACGGTCAAGACAGCTCCTAG 58.822 55.000 2.29 0.00 0.00 3.02
238 245 1.178276 CGGTCAAGACAGCTCCTAGT 58.822 55.000 2.29 0.00 0.00 2.57
239 246 2.290768 ACGGTCAAGACAGCTCCTAGTA 60.291 50.000 2.29 0.00 0.00 1.82
240 247 2.097791 CGGTCAAGACAGCTCCTAGTAC 59.902 54.545 2.29 0.00 0.00 2.73
241 248 3.358118 GGTCAAGACAGCTCCTAGTACT 58.642 50.000 0.00 0.00 0.00 2.73
242 249 4.525024 GGTCAAGACAGCTCCTAGTACTA 58.475 47.826 1.89 1.89 0.00 1.82
243 250 4.577283 GGTCAAGACAGCTCCTAGTACTAG 59.423 50.000 21.11 21.11 0.00 2.57
283 290 3.491208 GCATCTGCATGGTCCTCTT 57.509 52.632 0.00 0.00 41.59 2.85
284 291 1.307097 GCATCTGCATGGTCCTCTTC 58.693 55.000 0.00 0.00 41.59 2.87
285 292 1.134159 GCATCTGCATGGTCCTCTTCT 60.134 52.381 0.00 0.00 41.59 2.85
286 293 2.836262 CATCTGCATGGTCCTCTTCTC 58.164 52.381 0.00 0.00 0.00 2.87
287 294 1.198713 TCTGCATGGTCCTCTTCTCC 58.801 55.000 0.00 0.00 0.00 3.71
288 295 0.179936 CTGCATGGTCCTCTTCTCCC 59.820 60.000 0.00 0.00 0.00 4.30
289 296 0.547471 TGCATGGTCCTCTTCTCCCA 60.547 55.000 0.00 0.00 0.00 4.37
290 297 0.107459 GCATGGTCCTCTTCTCCCAC 60.107 60.000 0.00 0.00 0.00 4.61
291 298 0.543749 CATGGTCCTCTTCTCCCACC 59.456 60.000 0.00 0.00 0.00 4.61
292 299 0.119155 ATGGTCCTCTTCTCCCACCA 59.881 55.000 0.00 0.00 41.36 4.17
293 300 0.104672 TGGTCCTCTTCTCCCACCAA 60.105 55.000 0.00 0.00 34.10 3.67
294 301 0.325272 GGTCCTCTTCTCCCACCAAC 59.675 60.000 0.00 0.00 0.00 3.77
295 302 1.056660 GTCCTCTTCTCCCACCAACA 58.943 55.000 0.00 0.00 0.00 3.33
296 303 1.056660 TCCTCTTCTCCCACCAACAC 58.943 55.000 0.00 0.00 0.00 3.32
297 304 0.036875 CCTCTTCTCCCACCAACACC 59.963 60.000 0.00 0.00 0.00 4.16
298 305 0.320771 CTCTTCTCCCACCAACACCG 60.321 60.000 0.00 0.00 0.00 4.94
299 306 0.761323 TCTTCTCCCACCAACACCGA 60.761 55.000 0.00 0.00 0.00 4.69
300 307 0.107831 CTTCTCCCACCAACACCGAA 59.892 55.000 0.00 0.00 0.00 4.30
301 308 0.547075 TTCTCCCACCAACACCGAAA 59.453 50.000 0.00 0.00 0.00 3.46
302 309 0.179040 TCTCCCACCAACACCGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
303 310 1.152922 TCCCACCAACACCGAAACC 60.153 57.895 0.00 0.00 0.00 3.27
304 311 2.197605 CCCACCAACACCGAAACCC 61.198 63.158 0.00 0.00 0.00 4.11
305 312 1.454111 CCACCAACACCGAAACCCA 60.454 57.895 0.00 0.00 0.00 4.51
306 313 1.452145 CCACCAACACCGAAACCCAG 61.452 60.000 0.00 0.00 0.00 4.45
307 314 1.826487 ACCAACACCGAAACCCAGC 60.826 57.895 0.00 0.00 0.00 4.85
308 315 1.826054 CCAACACCGAAACCCAGCA 60.826 57.895 0.00 0.00 0.00 4.41
309 316 1.654220 CAACACCGAAACCCAGCAG 59.346 57.895 0.00 0.00 0.00 4.24
310 317 1.528309 AACACCGAAACCCAGCAGG 60.528 57.895 0.00 0.00 43.78 4.85
311 318 3.365265 CACCGAAACCCAGCAGGC 61.365 66.667 0.00 0.00 40.58 4.85
312 319 3.884774 ACCGAAACCCAGCAGGCA 61.885 61.111 0.00 0.00 40.58 4.75
313 320 3.058160 CCGAAACCCAGCAGGCAG 61.058 66.667 0.00 0.00 40.58 4.85
317 324 0.610232 GAAACCCAGCAGGCAGATGT 60.610 55.000 0.00 0.00 40.58 3.06
347 354 1.113253 CGTCGATCGTTCATTCCGAG 58.887 55.000 15.94 0.00 37.81 4.63
348 355 0.847035 GTCGATCGTTCATTCCGAGC 59.153 55.000 15.94 0.00 37.81 5.03
349 356 0.248907 TCGATCGTTCATTCCGAGCC 60.249 55.000 15.94 0.00 37.44 4.70
351 358 1.869754 CGATCGTTCATTCCGAGCCAT 60.870 52.381 7.03 0.00 37.44 4.40
354 361 1.160329 CGTTCATTCCGAGCCATCCC 61.160 60.000 0.00 0.00 0.00 3.85
355 362 0.107214 GTTCATTCCGAGCCATCCCA 60.107 55.000 0.00 0.00 0.00 4.37
357 364 0.181114 TCATTCCGAGCCATCCCAAG 59.819 55.000 0.00 0.00 0.00 3.61
358 365 1.152881 ATTCCGAGCCATCCCAAGC 60.153 57.895 0.00 0.00 0.00 4.01
359 366 2.947938 ATTCCGAGCCATCCCAAGCG 62.948 60.000 0.00 0.00 0.00 4.68
445 875 1.135859 GTTCTGCATTGAACTCTGCCG 60.136 52.381 10.69 0.00 42.03 5.69
490 933 1.071567 CGTTCTCGAGCTTCCCGTTC 61.072 60.000 7.81 0.00 39.71 3.95
493 936 0.970937 TCTCGAGCTTCCCGTTCCAT 60.971 55.000 7.81 0.00 0.00 3.41
505 948 2.423538 CCCGTTCCATCCACAGATTTTC 59.576 50.000 0.00 0.00 0.00 2.29
516 959 4.338118 TCCACAGATTTTCGCAGAAAGTTT 59.662 37.500 0.00 0.00 45.90 2.66
527 970 4.510340 TCGCAGAAAGTTTCAGAACCTTAC 59.490 41.667 17.65 0.00 36.39 2.34
528 971 4.511826 CGCAGAAAGTTTCAGAACCTTACT 59.488 41.667 17.65 0.00 36.39 2.24
529 972 5.333416 CGCAGAAAGTTTCAGAACCTTACTC 60.333 44.000 17.65 0.00 36.39 2.59
533 976 7.067008 CAGAAAGTTTCAGAACCTTACTCCAAA 59.933 37.037 17.65 0.00 36.39 3.28
534 977 7.614192 AGAAAGTTTCAGAACCTTACTCCAAAA 59.386 33.333 17.65 0.00 36.39 2.44
535 978 7.898014 AAGTTTCAGAACCTTACTCCAAAAT 57.102 32.000 0.00 0.00 36.39 1.82
536 979 7.511959 AGTTTCAGAACCTTACTCCAAAATC 57.488 36.000 0.00 0.00 36.39 2.17
539 982 7.889873 TTCAGAACCTTACTCCAAAATCAAA 57.110 32.000 0.00 0.00 0.00 2.69
540 983 8.477419 TTCAGAACCTTACTCCAAAATCAAAT 57.523 30.769 0.00 0.00 0.00 2.32
541 984 9.581289 TTCAGAACCTTACTCCAAAATCAAATA 57.419 29.630 0.00 0.00 0.00 1.40
543 986 7.970614 CAGAACCTTACTCCAAAATCAAATAGC 59.029 37.037 0.00 0.00 0.00 2.97
544 987 7.669722 AGAACCTTACTCCAAAATCAAATAGCA 59.330 33.333 0.00 0.00 0.00 3.49
545 988 7.396540 ACCTTACTCCAAAATCAAATAGCAG 57.603 36.000 0.00 0.00 0.00 4.24
546 989 7.175104 ACCTTACTCCAAAATCAAATAGCAGA 58.825 34.615 0.00 0.00 0.00 4.26
548 991 8.522830 CCTTACTCCAAAATCAAATAGCAGAAA 58.477 33.333 0.00 0.00 0.00 2.52
583 2237 9.793252 AAATAGCAGAAATTAATTGCAGTACAG 57.207 29.630 8.91 0.00 40.22 2.74
646 2318 2.197324 AAGCGGCCAAAACCCAGA 59.803 55.556 2.24 0.00 0.00 3.86
647 2319 2.200337 AAGCGGCCAAAACCCAGAC 61.200 57.895 2.24 0.00 0.00 3.51
652 3253 0.594602 GGCCAAAACCCAGACGTTAC 59.405 55.000 0.00 0.00 0.00 2.50
687 3290 0.250727 AGCTACAGAAAAGCGGCCAA 60.251 50.000 2.24 0.00 44.87 4.52
688 3291 0.596082 GCTACAGAAAAGCGGCCAAA 59.404 50.000 2.24 0.00 0.00 3.28
689 3292 1.666023 GCTACAGAAAAGCGGCCAAAC 60.666 52.381 2.24 0.00 0.00 2.93
690 3293 0.955905 TACAGAAAAGCGGCCAAACC 59.044 50.000 2.24 0.00 0.00 3.27
691 3294 1.006220 CAGAAAAGCGGCCAAACCC 60.006 57.895 2.24 0.00 33.26 4.11
748 3454 4.527583 GGGAGGCAGAGCAGAGCG 62.528 72.222 0.00 0.00 0.00 5.03
771 3484 0.881600 CTGGCAAGCAAACCAAAGCC 60.882 55.000 0.00 0.00 42.32 4.35
772 3485 1.336632 TGGCAAGCAAACCAAAGCCT 61.337 50.000 0.00 0.00 42.46 4.58
817 3594 2.258748 CTTTTCCCCGCTCTCTCCCC 62.259 65.000 0.00 0.00 0.00 4.81
890 3683 1.064060 GTCACAGCCACACAGAACAAC 59.936 52.381 0.00 0.00 0.00 3.32
928 3733 1.214062 CACGCCCACAGAGAGAGAC 59.786 63.158 0.00 0.00 0.00 3.36
929 3734 2.336478 ACGCCCACAGAGAGAGACG 61.336 63.158 0.00 0.00 0.00 4.18
930 3735 2.041115 CGCCCACAGAGAGAGACGA 61.041 63.158 0.00 0.00 0.00 4.20
931 3736 1.587043 CGCCCACAGAGAGAGACGAA 61.587 60.000 0.00 0.00 0.00 3.85
953 3758 6.515862 CGAAGAGGAAGAAACAGAGAAAGAGA 60.516 42.308 0.00 0.00 0.00 3.10
954 3759 6.933514 AGAGGAAGAAACAGAGAAAGAGAT 57.066 37.500 0.00 0.00 0.00 2.75
955 3760 6.935167 AGAGGAAGAAACAGAGAAAGAGATC 58.065 40.000 0.00 0.00 0.00 2.75
958 3776 6.154363 AGGAAGAAACAGAGAAAGAGATCGAT 59.846 38.462 0.00 0.00 0.00 3.59
980 3812 0.538516 AGGGAGAGGGATCGACATCG 60.539 60.000 0.00 0.00 41.45 3.84
982 3814 1.287503 GAGAGGGATCGACATCGGC 59.712 63.158 0.73 0.00 40.29 5.54
988 3820 1.423395 GGATCGACATCGGCTTGATC 58.577 55.000 0.73 0.00 40.29 2.92
1020 3852 0.324738 TGAGGCCGATCAGAGAAGGT 60.325 55.000 0.00 0.00 0.00 3.50
1023 3855 0.537188 GGCCGATCAGAGAAGGTGAA 59.463 55.000 0.00 0.00 0.00 3.18
1026 3858 1.472376 CCGATCAGAGAAGGTGAAGCC 60.472 57.143 0.00 0.00 37.58 4.35
1032 3864 0.035915 GAGAAGGTGAAGCCCTGGTC 60.036 60.000 0.00 0.00 38.26 4.02
1036 3868 2.670148 GGTGAAGCCCTGGTCGGAT 61.670 63.158 0.00 0.00 33.16 4.18
1449 4320 2.105806 CTCTAGGATTCCCCCTGCGC 62.106 65.000 0.00 0.00 37.10 6.09
1457 4328 3.536917 CCCCCTGCGCGATCTGTA 61.537 66.667 12.10 0.00 0.00 2.74
1470 4344 5.016359 CGCGATCTGTATGTAGAATCTACG 58.984 45.833 14.86 1.54 0.00 3.51
1472 4346 5.325494 CGATCTGTATGTAGAATCTACGCC 58.675 45.833 14.86 6.43 0.00 5.68
1473 4347 5.122554 CGATCTGTATGTAGAATCTACGCCT 59.877 44.000 14.86 5.75 0.00 5.52
1474 4348 6.313164 CGATCTGTATGTAGAATCTACGCCTA 59.687 42.308 14.86 4.88 0.00 3.93
1475 4349 6.798315 TCTGTATGTAGAATCTACGCCTAC 57.202 41.667 14.86 14.95 34.81 3.18
1476 4350 6.531923 TCTGTATGTAGAATCTACGCCTACT 58.468 40.000 14.86 0.00 35.17 2.57
1477 4351 6.649973 TCTGTATGTAGAATCTACGCCTACTC 59.350 42.308 14.86 3.27 35.17 2.59
1478 4352 6.293698 TGTATGTAGAATCTACGCCTACTCA 58.706 40.000 14.86 5.41 35.17 3.41
1479 4353 6.769341 TGTATGTAGAATCTACGCCTACTCAA 59.231 38.462 14.86 0.00 35.17 3.02
1480 4354 6.902771 ATGTAGAATCTACGCCTACTCAAT 57.097 37.500 14.86 0.00 35.17 2.57
1481 4355 6.315091 TGTAGAATCTACGCCTACTCAATC 57.685 41.667 14.86 0.00 35.17 2.67
1482 4356 4.857509 AGAATCTACGCCTACTCAATCC 57.142 45.455 0.00 0.00 0.00 3.01
1483 4357 3.253677 AGAATCTACGCCTACTCAATCCG 59.746 47.826 0.00 0.00 0.00 4.18
1484 4358 2.048444 TCTACGCCTACTCAATCCGT 57.952 50.000 0.00 0.00 36.07 4.69
1485 4359 3.198409 TCTACGCCTACTCAATCCGTA 57.802 47.619 0.00 0.00 33.79 4.02
1486 4360 3.539431 CTACGCCTACTCAATCCGTAG 57.461 52.381 4.45 4.45 43.25 3.51
1506 4380 5.120208 CGTAGTAGCAGAGAAGATAGAGCTC 59.880 48.000 5.27 5.27 33.83 4.09
1507 4381 5.310409 AGTAGCAGAGAAGATAGAGCTCT 57.690 43.478 22.17 22.17 39.46 4.09
1586 4460 3.334751 CGGCGTGCGTTGAGTTGA 61.335 61.111 0.00 0.00 0.00 3.18
1588 4462 1.954146 GGCGTGCGTTGAGTTGAGA 60.954 57.895 0.00 0.00 0.00 3.27
1589 4463 1.291877 GGCGTGCGTTGAGTTGAGAT 61.292 55.000 0.00 0.00 0.00 2.75
1590 4464 0.093705 GCGTGCGTTGAGTTGAGATC 59.906 55.000 0.00 0.00 0.00 2.75
1591 4465 1.702886 CGTGCGTTGAGTTGAGATCT 58.297 50.000 0.00 0.00 0.00 2.75
1592 4466 1.388093 CGTGCGTTGAGTTGAGATCTG 59.612 52.381 0.00 0.00 0.00 2.90
1634 4508 5.918426 TGGCTTGCATCTTCATTCAATAA 57.082 34.783 0.00 0.00 0.00 1.40
1635 4509 6.283544 TGGCTTGCATCTTCATTCAATAAA 57.716 33.333 0.00 0.00 0.00 1.40
1636 4510 6.880484 TGGCTTGCATCTTCATTCAATAAAT 58.120 32.000 0.00 0.00 0.00 1.40
1637 4511 6.759356 TGGCTTGCATCTTCATTCAATAAATG 59.241 34.615 0.00 0.00 45.22 2.32
1638 4512 6.292703 GGCTTGCATCTTCATTCAATAAATGC 60.293 38.462 0.00 0.00 43.80 3.56
1639 4513 6.256975 GCTTGCATCTTCATTCAATAAATGCA 59.743 34.615 3.21 3.21 43.80 3.96
1640 4514 7.042051 GCTTGCATCTTCATTCAATAAATGCAT 60.042 33.333 7.82 0.00 45.06 3.96
1641 4515 7.707774 TGCATCTTCATTCAATAAATGCATG 57.292 32.000 0.00 0.00 43.80 4.06
1642 4516 7.493367 TGCATCTTCATTCAATAAATGCATGA 58.507 30.769 0.00 0.00 43.80 3.07
1643 4517 8.147704 TGCATCTTCATTCAATAAATGCATGAT 58.852 29.630 0.00 0.00 40.60 2.45
1644 4518 8.435430 GCATCTTCATTCAATAAATGCATGATG 58.565 33.333 0.00 5.25 40.60 3.07
1645 4519 7.940178 TCTTCATTCAATAAATGCATGATGC 57.060 32.000 11.12 11.12 40.60 3.91
1646 4520 7.722363 TCTTCATTCAATAAATGCATGATGCT 58.278 30.769 19.19 0.51 45.31 3.79
1647 4521 8.201464 TCTTCATTCAATAAATGCATGATGCTT 58.799 29.630 19.19 9.64 45.31 3.91
1648 4522 7.707774 TCATTCAATAAATGCATGATGCTTG 57.292 32.000 19.19 13.63 45.31 4.01
1649 4523 5.977171 TTCAATAAATGCATGATGCTTGC 57.023 34.783 19.19 1.10 45.31 4.01
1650 4524 5.270893 TCAATAAATGCATGATGCTTGCT 57.729 34.783 19.19 6.23 45.31 3.91
1651 4525 5.666462 TCAATAAATGCATGATGCTTGCTT 58.334 33.333 19.19 7.16 45.31 3.91
1652 4526 6.110033 TCAATAAATGCATGATGCTTGCTTT 58.890 32.000 19.19 13.98 45.31 3.51
1653 4527 6.596106 TCAATAAATGCATGATGCTTGCTTTT 59.404 30.769 19.19 17.04 45.31 2.27
1654 4528 6.995511 ATAAATGCATGATGCTTGCTTTTT 57.004 29.167 19.19 10.48 45.31 1.94
1725 4604 0.732538 CCACTTGAAATTTCGGCGCC 60.733 55.000 19.07 19.07 0.00 6.53
1728 4607 1.068541 ACTTGAAATTTCGGCGCCTTC 60.069 47.619 26.68 20.70 0.00 3.46
1760 4643 2.863704 GCGGTATAAAATACTCGCCCGT 60.864 50.000 15.74 0.00 37.62 5.28
1762 4645 3.320626 GGTATAAAATACTCGCCCGTCC 58.679 50.000 0.00 0.00 0.00 4.79
1824 4707 2.213499 GAGTCATCCAGCATTAACCGG 58.787 52.381 0.00 0.00 0.00 5.28
1916 4802 0.883153 CCCCGGGGAAACTTTTAACG 59.117 55.000 38.41 0.83 37.50 3.18
1936 4825 3.990469 ACGTGATTGTTCTAGACTGCAAG 59.010 43.478 0.00 0.00 42.29 4.01
2006 4895 3.532542 TGTCCATGTTGAAACGTACACA 58.467 40.909 0.00 0.00 0.00 3.72
2026 4915 2.097396 CAGTACACAGTGAAAACGAGCG 60.097 50.000 7.81 0.00 0.00 5.03
2076 4965 1.965935 TACATGGGGTGCATTGATCG 58.034 50.000 0.00 0.00 0.00 3.69
2214 5104 4.003788 CAAGGTCCCGTCGCCTGT 62.004 66.667 0.00 0.00 34.90 4.00
2323 5220 5.404946 CAGAATCTGCTTGTTAACAATGGG 58.595 41.667 20.83 11.05 35.02 4.00
2331 5228 4.982295 GCTTGTTAACAATGGGTTTCTGTC 59.018 41.667 20.83 0.71 40.96 3.51
2337 5234 4.051661 ACAATGGGTTTCTGTCATCCAT 57.948 40.909 0.00 0.00 39.63 3.41
2346 5243 5.385617 GTTTCTGTCATCCATTTCGTGAAG 58.614 41.667 0.00 0.00 0.00 3.02
2365 5262 6.183359 CGTGAAGGTACGAATTTTCTCACTAC 60.183 42.308 0.00 0.00 46.46 2.73
2367 5264 7.331193 GTGAAGGTACGAATTTTCTCACTACAT 59.669 37.037 0.00 0.00 0.00 2.29
2385 5282 6.042552 CACTACATTCATATTCCTGGTCTCCT 59.957 42.308 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.761689 ACCCAAAGCAAAATGAATCTATAATGT 58.238 29.630 0.00 0.00 0.00 2.71
7 8 9.252962 GACCCAAAGCAAAATGAATCTATAATG 57.747 33.333 0.00 0.00 0.00 1.90
8 9 8.980596 TGACCCAAAGCAAAATGAATCTATAAT 58.019 29.630 0.00 0.00 0.00 1.28
9 10 8.250332 GTGACCCAAAGCAAAATGAATCTATAA 58.750 33.333 0.00 0.00 0.00 0.98
10 11 7.415095 CGTGACCCAAAGCAAAATGAATCTATA 60.415 37.037 0.00 0.00 0.00 1.31
11 12 6.625740 CGTGACCCAAAGCAAAATGAATCTAT 60.626 38.462 0.00 0.00 0.00 1.98
12 13 5.335583 CGTGACCCAAAGCAAAATGAATCTA 60.336 40.000 0.00 0.00 0.00 1.98
13 14 4.559300 CGTGACCCAAAGCAAAATGAATCT 60.559 41.667 0.00 0.00 0.00 2.40
14 15 3.674753 CGTGACCCAAAGCAAAATGAATC 59.325 43.478 0.00 0.00 0.00 2.52
15 16 3.069443 ACGTGACCCAAAGCAAAATGAAT 59.931 39.130 0.00 0.00 0.00 2.57
16 17 2.428890 ACGTGACCCAAAGCAAAATGAA 59.571 40.909 0.00 0.00 0.00 2.57
17 18 2.028130 ACGTGACCCAAAGCAAAATGA 58.972 42.857 0.00 0.00 0.00 2.57
18 19 2.507339 ACGTGACCCAAAGCAAAATG 57.493 45.000 0.00 0.00 0.00 2.32
19 20 4.038642 ACATAACGTGACCCAAAGCAAAAT 59.961 37.500 0.00 0.00 0.00 1.82
20 21 3.381908 ACATAACGTGACCCAAAGCAAAA 59.618 39.130 0.00 0.00 0.00 2.44
21 22 2.952978 ACATAACGTGACCCAAAGCAAA 59.047 40.909 0.00 0.00 0.00 3.68
22 23 2.577700 ACATAACGTGACCCAAAGCAA 58.422 42.857 0.00 0.00 0.00 3.91
23 24 2.264005 ACATAACGTGACCCAAAGCA 57.736 45.000 0.00 0.00 0.00 3.91
24 25 4.957759 ATAACATAACGTGACCCAAAGC 57.042 40.909 0.00 0.00 0.00 3.51
25 26 8.598075 GTTACTATAACATAACGTGACCCAAAG 58.402 37.037 0.00 0.00 0.00 2.77
26 27 8.093307 TGTTACTATAACATAACGTGACCCAAA 58.907 33.333 0.00 0.00 34.60 3.28
27 28 7.609960 TGTTACTATAACATAACGTGACCCAA 58.390 34.615 0.00 0.00 34.60 4.12
28 29 7.167924 TGTTACTATAACATAACGTGACCCA 57.832 36.000 0.00 0.00 34.60 4.51
29 30 9.918630 ATATGTTACTATAACATAACGTGACCC 57.081 33.333 19.87 0.00 43.71 4.46
54 55 8.762645 TGAGAGAGATGTTTGGAGTAACATAAT 58.237 33.333 2.29 0.00 45.98 1.28
55 56 8.134202 TGAGAGAGATGTTTGGAGTAACATAA 57.866 34.615 2.29 0.00 45.98 1.90
56 57 7.718334 TGAGAGAGATGTTTGGAGTAACATA 57.282 36.000 2.29 0.00 45.98 2.29
58 59 6.611613 ATGAGAGAGATGTTTGGAGTAACA 57.388 37.500 0.00 0.00 41.81 2.41
59 60 8.874816 GTTAATGAGAGAGATGTTTGGAGTAAC 58.125 37.037 0.00 0.00 0.00 2.50
60 61 8.816894 AGTTAATGAGAGAGATGTTTGGAGTAA 58.183 33.333 0.00 0.00 0.00 2.24
61 62 8.367660 AGTTAATGAGAGAGATGTTTGGAGTA 57.632 34.615 0.00 0.00 0.00 2.59
62 63 7.251321 AGTTAATGAGAGAGATGTTTGGAGT 57.749 36.000 0.00 0.00 0.00 3.85
67 68 9.717942 GGCATATAGTTAATGAGAGAGATGTTT 57.282 33.333 0.00 0.00 0.00 2.83
68 69 8.874156 TGGCATATAGTTAATGAGAGAGATGTT 58.126 33.333 0.00 0.00 0.00 2.71
69 70 8.310382 GTGGCATATAGTTAATGAGAGAGATGT 58.690 37.037 0.00 0.00 0.00 3.06
70 71 8.309656 TGTGGCATATAGTTAATGAGAGAGATG 58.690 37.037 0.00 0.00 0.00 2.90
71 72 8.427902 TGTGGCATATAGTTAATGAGAGAGAT 57.572 34.615 0.00 0.00 0.00 2.75
72 73 7.839680 TGTGGCATATAGTTAATGAGAGAGA 57.160 36.000 0.00 0.00 0.00 3.10
84 85 9.801873 GACAAATTTGTTTATGTGGCATATAGT 57.198 29.630 24.02 0.00 42.43 2.12
87 88 9.153721 CAAGACAAATTTGTTTATGTGGCATAT 57.846 29.630 24.02 1.41 42.43 1.78
88 89 8.363390 TCAAGACAAATTTGTTTATGTGGCATA 58.637 29.630 24.02 5.33 42.43 3.14
89 90 7.215789 TCAAGACAAATTTGTTTATGTGGCAT 58.784 30.769 24.02 0.24 42.43 4.40
90 91 6.577103 TCAAGACAAATTTGTTTATGTGGCA 58.423 32.000 24.02 6.23 42.43 4.92
91 92 7.656707 ATCAAGACAAATTTGTTTATGTGGC 57.343 32.000 24.02 9.41 42.43 5.01
94 95 9.075519 CGCATATCAAGACAAATTTGTTTATGT 57.924 29.630 24.02 13.23 42.43 2.29
95 96 8.051909 GCGCATATCAAGACAAATTTGTTTATG 58.948 33.333 24.02 21.74 42.43 1.90
96 97 7.975616 AGCGCATATCAAGACAAATTTGTTTAT 59.024 29.630 24.02 16.26 42.43 1.40
97 98 7.312154 AGCGCATATCAAGACAAATTTGTTTA 58.688 30.769 24.02 10.92 42.43 2.01
98 99 6.158598 AGCGCATATCAAGACAAATTTGTTT 58.841 32.000 24.02 16.40 42.43 2.83
99 100 5.713025 AGCGCATATCAAGACAAATTTGTT 58.287 33.333 24.02 11.02 42.43 2.83
100 101 5.314923 AGCGCATATCAAGACAAATTTGT 57.685 34.783 23.49 23.49 45.65 2.83
101 102 6.914215 ACATAGCGCATATCAAGACAAATTTG 59.086 34.615 16.67 16.67 0.00 2.32
102 103 7.031226 ACATAGCGCATATCAAGACAAATTT 57.969 32.000 11.47 0.00 0.00 1.82
103 104 6.624352 ACATAGCGCATATCAAGACAAATT 57.376 33.333 11.47 0.00 0.00 1.82
104 105 6.624352 AACATAGCGCATATCAAGACAAAT 57.376 33.333 11.47 0.00 0.00 2.32
105 106 6.761242 AGTAACATAGCGCATATCAAGACAAA 59.239 34.615 11.47 0.00 0.00 2.83
106 107 6.280643 AGTAACATAGCGCATATCAAGACAA 58.719 36.000 11.47 0.00 0.00 3.18
107 108 5.842907 AGTAACATAGCGCATATCAAGACA 58.157 37.500 11.47 0.00 0.00 3.41
108 109 6.584954 CAAGTAACATAGCGCATATCAAGAC 58.415 40.000 11.47 0.00 0.00 3.01
109 110 5.177511 GCAAGTAACATAGCGCATATCAAGA 59.822 40.000 11.47 0.00 0.00 3.02
110 111 5.178252 AGCAAGTAACATAGCGCATATCAAG 59.822 40.000 11.47 0.00 0.00 3.02
111 112 5.056480 AGCAAGTAACATAGCGCATATCAA 58.944 37.500 11.47 0.00 0.00 2.57
112 113 4.631131 AGCAAGTAACATAGCGCATATCA 58.369 39.130 11.47 0.00 0.00 2.15
113 114 6.366332 ACTTAGCAAGTAACATAGCGCATATC 59.634 38.462 11.47 0.00 40.69 1.63
114 115 6.223852 ACTTAGCAAGTAACATAGCGCATAT 58.776 36.000 11.47 1.45 40.69 1.78
115 116 5.597806 ACTTAGCAAGTAACATAGCGCATA 58.402 37.500 11.47 0.00 40.69 3.14
116 117 4.442706 ACTTAGCAAGTAACATAGCGCAT 58.557 39.130 11.47 0.00 40.69 4.73
117 118 3.857052 ACTTAGCAAGTAACATAGCGCA 58.143 40.909 11.47 0.00 40.69 6.09
118 119 4.859629 AACTTAGCAAGTAACATAGCGC 57.140 40.909 0.00 0.00 41.91 5.92
119 120 7.254017 GGAGTAAACTTAGCAAGTAACATAGCG 60.254 40.741 2.60 0.00 41.91 4.26
120 121 7.011202 GGGAGTAAACTTAGCAAGTAACATAGC 59.989 40.741 2.60 0.00 41.91 2.97
121 122 8.038944 TGGGAGTAAACTTAGCAAGTAACATAG 58.961 37.037 2.60 0.00 41.91 2.23
122 123 7.820872 GTGGGAGTAAACTTAGCAAGTAACATA 59.179 37.037 2.60 0.00 41.91 2.29
123 124 6.653740 GTGGGAGTAAACTTAGCAAGTAACAT 59.346 38.462 2.60 0.00 41.91 2.71
124 125 5.993441 GTGGGAGTAAACTTAGCAAGTAACA 59.007 40.000 2.60 0.00 41.91 2.41
125 126 6.228995 AGTGGGAGTAAACTTAGCAAGTAAC 58.771 40.000 2.60 4.86 41.91 2.50
126 127 6.429521 AGTGGGAGTAAACTTAGCAAGTAA 57.570 37.500 2.60 0.00 41.91 2.24
127 128 7.398047 TCATAGTGGGAGTAAACTTAGCAAGTA 59.602 37.037 2.60 0.00 41.91 2.24
128 129 4.976540 AGTGGGAGTAAACTTAGCAAGT 57.023 40.909 0.00 0.00 45.46 3.16
129 130 6.535508 GTCATAGTGGGAGTAAACTTAGCAAG 59.464 42.308 0.00 0.00 0.00 4.01
130 131 6.403878 GTCATAGTGGGAGTAAACTTAGCAA 58.596 40.000 0.00 0.00 0.00 3.91
131 132 5.105064 GGTCATAGTGGGAGTAAACTTAGCA 60.105 44.000 0.00 0.00 0.00 3.49
132 133 5.105064 TGGTCATAGTGGGAGTAAACTTAGC 60.105 44.000 0.00 0.00 0.00 3.09
133 134 6.540438 TGGTCATAGTGGGAGTAAACTTAG 57.460 41.667 0.00 0.00 0.00 2.18
134 135 5.105064 GCTGGTCATAGTGGGAGTAAACTTA 60.105 44.000 0.00 0.00 0.00 2.24
135 136 4.323562 GCTGGTCATAGTGGGAGTAAACTT 60.324 45.833 0.00 0.00 0.00 2.66
136 137 3.197983 GCTGGTCATAGTGGGAGTAAACT 59.802 47.826 0.00 0.00 0.00 2.66
137 138 3.532542 GCTGGTCATAGTGGGAGTAAAC 58.467 50.000 0.00 0.00 0.00 2.01
138 139 2.504175 GGCTGGTCATAGTGGGAGTAAA 59.496 50.000 0.00 0.00 0.00 2.01
139 140 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
140 141 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
141 142 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
142 143 0.467384 CAGGCTGGTCATAGTGGGAG 59.533 60.000 6.61 0.00 0.00 4.30
143 144 0.042581 TCAGGCTGGTCATAGTGGGA 59.957 55.000 15.73 0.00 0.00 4.37
144 145 0.467384 CTCAGGCTGGTCATAGTGGG 59.533 60.000 15.73 0.00 0.00 4.61
145 146 1.411977 CTCTCAGGCTGGTCATAGTGG 59.588 57.143 15.73 0.00 0.00 4.00
146 147 2.361757 CTCTCTCAGGCTGGTCATAGTG 59.638 54.545 15.73 5.34 0.00 2.74
147 148 2.243478 TCTCTCTCAGGCTGGTCATAGT 59.757 50.000 15.73 0.00 0.00 2.12
148 149 2.622942 GTCTCTCTCAGGCTGGTCATAG 59.377 54.545 15.73 4.10 0.00 2.23
149 150 2.660572 GTCTCTCTCAGGCTGGTCATA 58.339 52.381 15.73 0.00 0.00 2.15
150 151 1.484038 GTCTCTCTCAGGCTGGTCAT 58.516 55.000 15.73 0.00 0.00 3.06
151 152 0.962855 CGTCTCTCTCAGGCTGGTCA 60.963 60.000 15.73 0.00 0.00 4.02
152 153 1.806568 CGTCTCTCTCAGGCTGGTC 59.193 63.158 15.73 0.00 0.00 4.02
153 154 2.347322 GCGTCTCTCTCAGGCTGGT 61.347 63.158 15.73 0.00 0.00 4.00
154 155 2.493973 GCGTCTCTCTCAGGCTGG 59.506 66.667 15.73 5.63 0.00 4.85
155 156 2.051518 AGGCGTCTCTCTCAGGCTG 61.052 63.158 8.58 8.58 38.11 4.85
156 157 2.051518 CAGGCGTCTCTCTCAGGCT 61.052 63.158 0.00 0.00 40.22 4.58
157 158 2.003658 CTCAGGCGTCTCTCTCAGGC 62.004 65.000 0.00 0.00 0.00 4.85
158 159 0.393673 TCTCAGGCGTCTCTCTCAGG 60.394 60.000 0.00 0.00 0.00 3.86
159 160 1.016627 CTCTCAGGCGTCTCTCTCAG 58.983 60.000 0.00 0.00 0.00 3.35
160 161 0.615850 TCTCTCAGGCGTCTCTCTCA 59.384 55.000 0.00 0.00 0.00 3.27
161 162 1.134521 TCTCTCTCAGGCGTCTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
162 163 0.908910 TCTCTCTCAGGCGTCTCTCT 59.091 55.000 0.00 0.00 0.00 3.10
163 164 1.014352 GTCTCTCTCAGGCGTCTCTC 58.986 60.000 0.00 0.00 0.00 3.20
164 165 0.742990 CGTCTCTCTCAGGCGTCTCT 60.743 60.000 0.00 0.00 45.76 3.10
165 166 1.719117 CGTCTCTCTCAGGCGTCTC 59.281 63.158 0.00 0.00 45.76 3.36
166 167 3.897936 CGTCTCTCTCAGGCGTCT 58.102 61.111 0.00 0.00 45.76 4.18
170 171 2.897641 AATGCGCGTCTCTCTCAGGC 62.898 60.000 8.43 0.00 0.00 4.85
171 172 1.140589 AATGCGCGTCTCTCTCAGG 59.859 57.895 8.43 0.00 0.00 3.86
172 173 1.144565 CCAATGCGCGTCTCTCTCAG 61.145 60.000 8.43 0.00 0.00 3.35
173 174 1.153765 CCAATGCGCGTCTCTCTCA 60.154 57.895 8.43 0.00 0.00 3.27
174 175 0.458543 TTCCAATGCGCGTCTCTCTC 60.459 55.000 8.43 0.00 0.00 3.20
175 176 0.176680 ATTCCAATGCGCGTCTCTCT 59.823 50.000 8.43 0.00 0.00 3.10
176 177 1.009829 AATTCCAATGCGCGTCTCTC 58.990 50.000 8.43 0.00 0.00 3.20
177 178 1.933853 GTAATTCCAATGCGCGTCTCT 59.066 47.619 8.43 0.00 0.00 3.10
178 179 1.003866 GGTAATTCCAATGCGCGTCTC 60.004 52.381 8.43 0.00 35.97 3.36
179 180 1.014352 GGTAATTCCAATGCGCGTCT 58.986 50.000 8.43 0.00 35.97 4.18
180 181 0.028902 GGGTAATTCCAATGCGCGTC 59.971 55.000 8.43 0.00 38.11 5.19
185 186 2.222027 CTCTCCGGGTAATTCCAATGC 58.778 52.381 0.00 0.00 38.11 3.56
196 197 3.649843 TGGTAATGAATACTCTCCGGGT 58.350 45.455 0.00 0.00 34.74 5.28
204 205 5.873164 GTCTTGACCGTTGGTAATGAATACT 59.127 40.000 0.00 0.00 35.25 2.12
210 211 2.159627 GCTGTCTTGACCGTTGGTAATG 59.840 50.000 0.00 0.00 35.25 1.90
278 285 0.036875 GGTGTTGGTGGGAGAAGAGG 59.963 60.000 0.00 0.00 0.00 3.69
280 287 0.761323 TCGGTGTTGGTGGGAGAAGA 60.761 55.000 0.00 0.00 0.00 2.87
281 288 0.107831 TTCGGTGTTGGTGGGAGAAG 59.892 55.000 0.00 0.00 0.00 2.85
282 289 0.547075 TTTCGGTGTTGGTGGGAGAA 59.453 50.000 0.00 0.00 0.00 2.87
283 290 0.179040 GTTTCGGTGTTGGTGGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
284 291 1.170290 GGTTTCGGTGTTGGTGGGAG 61.170 60.000 0.00 0.00 0.00 4.30
285 292 1.152922 GGTTTCGGTGTTGGTGGGA 60.153 57.895 0.00 0.00 0.00 4.37
286 293 2.197605 GGGTTTCGGTGTTGGTGGG 61.198 63.158 0.00 0.00 0.00 4.61
287 294 1.452145 CTGGGTTTCGGTGTTGGTGG 61.452 60.000 0.00 0.00 0.00 4.61
288 295 2.029743 CTGGGTTTCGGTGTTGGTG 58.970 57.895 0.00 0.00 0.00 4.17
289 296 1.826487 GCTGGGTTTCGGTGTTGGT 60.826 57.895 0.00 0.00 0.00 3.67
290 297 1.795170 CTGCTGGGTTTCGGTGTTGG 61.795 60.000 0.00 0.00 0.00 3.77
291 298 1.654220 CTGCTGGGTTTCGGTGTTG 59.346 57.895 0.00 0.00 0.00 3.33
292 299 1.528309 CCTGCTGGGTTTCGGTGTT 60.528 57.895 0.71 0.00 0.00 3.32
293 300 2.113139 CCTGCTGGGTTTCGGTGT 59.887 61.111 0.71 0.00 0.00 4.16
294 301 3.365265 GCCTGCTGGGTTTCGGTG 61.365 66.667 12.06 0.00 37.43 4.94
295 302 3.850098 CTGCCTGCTGGGTTTCGGT 62.850 63.158 12.06 0.00 37.43 4.69
296 303 2.826777 ATCTGCCTGCTGGGTTTCGG 62.827 60.000 12.06 0.00 37.43 4.30
297 304 1.377725 ATCTGCCTGCTGGGTTTCG 60.378 57.895 12.06 0.00 37.43 3.46
298 305 0.610232 ACATCTGCCTGCTGGGTTTC 60.610 55.000 12.06 0.00 37.43 2.78
299 306 0.610232 GACATCTGCCTGCTGGGTTT 60.610 55.000 12.06 0.00 37.43 3.27
300 307 1.001641 GACATCTGCCTGCTGGGTT 60.002 57.895 12.06 0.00 37.43 4.11
301 308 1.908340 GAGACATCTGCCTGCTGGGT 61.908 60.000 12.06 0.00 37.43 4.51
302 309 1.153208 GAGACATCTGCCTGCTGGG 60.153 63.158 12.06 1.66 38.36 4.45
303 310 1.521010 CGAGACATCTGCCTGCTGG 60.521 63.158 5.03 5.03 0.00 4.85
304 311 2.172372 GCGAGACATCTGCCTGCTG 61.172 63.158 0.00 0.00 0.00 4.41
305 312 2.186384 GCGAGACATCTGCCTGCT 59.814 61.111 0.00 0.00 0.00 4.24
306 313 2.894387 GGCGAGACATCTGCCTGC 60.894 66.667 12.43 1.06 40.07 4.85
307 314 2.584418 CGGCGAGACATCTGCCTG 60.584 66.667 0.00 8.89 40.64 4.85
308 315 4.521062 GCGGCGAGACATCTGCCT 62.521 66.667 12.98 0.00 40.64 4.75
310 317 4.819761 TGGCGGCGAGACATCTGC 62.820 66.667 12.98 0.00 28.76 4.26
311 318 2.887568 GTGGCGGCGAGACATCTG 60.888 66.667 12.98 0.00 41.88 2.90
312 319 4.498520 CGTGGCGGCGAGACATCT 62.499 66.667 12.98 0.00 41.88 2.90
313 320 4.796231 ACGTGGCGGCGAGACATC 62.796 66.667 12.98 0.00 41.88 3.06
336 343 0.107214 TGGGATGGCTCGGAATGAAC 60.107 55.000 0.00 0.00 0.00 3.18
342 349 4.161295 CGCTTGGGATGGCTCGGA 62.161 66.667 0.00 0.00 0.00 4.55
347 354 4.503314 GCTTGCGCTTGGGATGGC 62.503 66.667 9.73 0.00 0.00 4.40
348 355 4.183686 CGCTTGCGCTTGGGATGG 62.184 66.667 9.73 0.00 0.00 3.51
349 356 4.183686 CCGCTTGCGCTTGGGATG 62.184 66.667 9.73 0.00 0.00 3.51
359 366 4.868900 CGTGTATGCGCCGCTTGC 62.869 66.667 11.67 8.55 0.00 4.01
375 389 0.452987 CATGTGCTTGGGATGGTTCG 59.547 55.000 0.00 0.00 0.00 3.95
445 875 4.534797 AGGAGTATGACTGTACTGGTACC 58.465 47.826 4.43 4.43 35.14 3.34
490 933 2.358957 TCTGCGAAAATCTGTGGATGG 58.641 47.619 0.00 0.00 31.75 3.51
493 936 3.476552 ACTTTCTGCGAAAATCTGTGGA 58.523 40.909 5.49 0.00 0.00 4.02
505 948 3.971032 AAGGTTCTGAAACTTTCTGCG 57.029 42.857 14.72 0.00 29.41 5.18
516 959 9.231297 CTATTTGATTTTGGAGTAAGGTTCTGA 57.769 33.333 0.00 0.00 0.00 3.27
561 2215 6.430925 TCACTGTACTGCAATTAATTTCTGCT 59.569 34.615 10.98 0.00 37.00 4.24
605 2277 1.219213 TGGTGGGACCTGGTTTTTGAT 59.781 47.619 0.00 0.00 39.58 2.57
606 2278 0.631753 TGGTGGGACCTGGTTTTTGA 59.368 50.000 0.00 0.00 39.58 2.69
646 2318 1.577328 GGCTGCATGCACAGTAACGT 61.577 55.000 18.46 0.00 45.15 3.99
647 2319 1.135315 GGCTGCATGCACAGTAACG 59.865 57.895 18.46 6.37 45.15 3.18
677 3278 2.802724 GGTTGGGTTTGGCCGCTTT 61.803 57.895 0.00 0.00 38.44 3.51
687 3290 0.983905 GGGTTTGGTTGGGTTGGGTT 60.984 55.000 0.00 0.00 0.00 4.11
688 3291 1.383386 GGGTTTGGTTGGGTTGGGT 60.383 57.895 0.00 0.00 0.00 4.51
689 3292 1.383248 TGGGTTTGGTTGGGTTGGG 60.383 57.895 0.00 0.00 0.00 4.12
690 3293 2.038814 GCTGGGTTTGGTTGGGTTGG 62.039 60.000 0.00 0.00 0.00 3.77
691 3294 1.333636 TGCTGGGTTTGGTTGGGTTG 61.334 55.000 0.00 0.00 0.00 3.77
788 3529 0.605589 CGGGGAAAAGAAACCGCTCT 60.606 55.000 0.00 0.00 39.85 4.09
817 3594 1.435577 GGTATTTATAGGTGGCGCGG 58.564 55.000 8.83 0.00 0.00 6.46
890 3683 1.284982 CGTGCAGAGTGGTTTCTCGG 61.285 60.000 0.00 0.00 39.21 4.63
928 3733 5.533482 TCTTTCTCTGTTTCTTCCTCTTCG 58.467 41.667 0.00 0.00 0.00 3.79
929 3734 6.754193 TCTCTTTCTCTGTTTCTTCCTCTTC 58.246 40.000 0.00 0.00 0.00 2.87
930 3735 6.739331 TCTCTTTCTCTGTTTCTTCCTCTT 57.261 37.500 0.00 0.00 0.00 2.85
931 3736 6.350110 CGATCTCTTTCTCTGTTTCTTCCTCT 60.350 42.308 0.00 0.00 0.00 3.69
953 3758 2.092646 CGATCCCTCTCCCTCTATCGAT 60.093 54.545 2.16 2.16 38.72 3.59
954 3759 1.279558 CGATCCCTCTCCCTCTATCGA 59.720 57.143 0.00 0.00 38.72 3.59
955 3760 1.279558 TCGATCCCTCTCCCTCTATCG 59.720 57.143 0.00 0.00 38.00 2.92
958 3776 1.519498 TGTCGATCCCTCTCCCTCTA 58.481 55.000 0.00 0.00 0.00 2.43
980 3812 0.815615 GATGGACGGTGGATCAAGCC 60.816 60.000 0.00 0.00 0.00 4.35
982 3814 2.158914 TCATGATGGACGGTGGATCAAG 60.159 50.000 0.00 0.58 30.14 3.02
988 3820 1.524621 GCCTCATGATGGACGGTGG 60.525 63.158 13.48 2.74 0.00 4.61
1020 3852 1.602237 GAATCCGACCAGGGCTTCA 59.398 57.895 0.00 0.00 41.52 3.02
1023 3855 4.162690 GCGAATCCGACCAGGGCT 62.163 66.667 0.00 0.00 41.52 5.19
1107 3939 0.382515 CGAAGCCGAGGAAGAGGTAG 59.617 60.000 0.00 0.00 38.22 3.18
1449 4320 5.122554 AGGCGTAGATTCTACATACAGATCG 59.877 44.000 20.80 7.25 0.00 3.69
1457 4328 6.071840 GGATTGAGTAGGCGTAGATTCTACAT 60.072 42.308 20.80 10.35 36.69 2.29
1470 4344 2.621998 TGCTACTACGGATTGAGTAGGC 59.378 50.000 10.25 3.79 43.58 3.93
1472 4346 5.057819 TCTCTGCTACTACGGATTGAGTAG 58.942 45.833 4.97 4.97 45.33 2.57
1473 4347 5.032327 TCTCTGCTACTACGGATTGAGTA 57.968 43.478 0.00 0.00 0.00 2.59
1474 4348 3.887352 TCTCTGCTACTACGGATTGAGT 58.113 45.455 0.00 0.00 0.00 3.41
1475 4349 4.576873 TCTTCTCTGCTACTACGGATTGAG 59.423 45.833 0.00 0.00 0.00 3.02
1476 4350 4.524053 TCTTCTCTGCTACTACGGATTGA 58.476 43.478 0.00 0.00 0.00 2.57
1477 4351 4.902443 TCTTCTCTGCTACTACGGATTG 57.098 45.455 0.00 0.00 0.00 2.67
1478 4352 6.535540 TCTATCTTCTCTGCTACTACGGATT 58.464 40.000 0.00 0.00 0.00 3.01
1479 4353 6.116711 TCTATCTTCTCTGCTACTACGGAT 57.883 41.667 0.00 0.00 0.00 4.18
1480 4354 5.543714 CTCTATCTTCTCTGCTACTACGGA 58.456 45.833 0.00 0.00 0.00 4.69
1481 4355 4.153475 GCTCTATCTTCTCTGCTACTACGG 59.847 50.000 0.00 0.00 0.00 4.02
1482 4356 4.994852 AGCTCTATCTTCTCTGCTACTACG 59.005 45.833 0.00 0.00 0.00 3.51
1483 4357 6.147821 CAGAGCTCTATCTTCTCTGCTACTAC 59.852 46.154 17.75 0.00 44.71 2.73
1484 4358 6.230472 CAGAGCTCTATCTTCTCTGCTACTA 58.770 44.000 17.75 0.00 44.71 1.82
1485 4359 5.065914 CAGAGCTCTATCTTCTCTGCTACT 58.934 45.833 17.75 0.00 44.71 2.57
1486 4360 5.362556 CAGAGCTCTATCTTCTCTGCTAC 57.637 47.826 17.75 0.00 44.71 3.58
1506 4380 4.510340 ACCAAGAAACGCAAACTACTACAG 59.490 41.667 0.00 0.00 0.00 2.74
1507 4381 4.271533 CACCAAGAAACGCAAACTACTACA 59.728 41.667 0.00 0.00 0.00 2.74
1513 4387 1.676006 CCTCACCAAGAAACGCAAACT 59.324 47.619 0.00 0.00 0.00 2.66
1575 4449 0.723981 GCCAGATCTCAACTCAACGC 59.276 55.000 0.00 0.00 0.00 4.84
1583 4457 0.246360 TCGCTTTCGCCAGATCTCAA 59.754 50.000 0.00 0.00 35.26 3.02
1585 4459 1.260033 CATTCGCTTTCGCCAGATCTC 59.740 52.381 0.00 0.00 35.26 2.75
1586 4460 1.293924 CATTCGCTTTCGCCAGATCT 58.706 50.000 0.00 0.00 35.26 2.75
1588 4462 0.107703 TCCATTCGCTTTCGCCAGAT 60.108 50.000 0.00 0.00 35.26 2.90
1589 4463 0.321210 TTCCATTCGCTTTCGCCAGA 60.321 50.000 0.00 0.00 35.26 3.86
1590 4464 0.734889 ATTCCATTCGCTTTCGCCAG 59.265 50.000 0.00 0.00 35.26 4.85
1591 4465 1.173043 AATTCCATTCGCTTTCGCCA 58.827 45.000 0.00 0.00 35.26 5.69
1592 4466 2.278026 AAATTCCATTCGCTTTCGCC 57.722 45.000 0.00 0.00 35.26 5.54
1652 4526 8.497554 GCATCATGCATTAACTCAAAAGAAAAA 58.502 29.630 4.20 0.00 44.26 1.94
1653 4527 8.020861 GCATCATGCATTAACTCAAAAGAAAA 57.979 30.769 4.20 0.00 44.26 2.29
1654 4528 7.585286 GCATCATGCATTAACTCAAAAGAAA 57.415 32.000 4.20 0.00 44.26 2.52
1738 4618 2.608752 CGGGCGAGTATTTTATACCGCT 60.609 50.000 20.86 0.00 41.96 5.52
1760 4643 1.475403 GTCTCCCAGAATGACGAGGA 58.525 55.000 0.00 0.00 39.69 3.71
1762 4645 0.101399 CGGTCTCCCAGAATGACGAG 59.899 60.000 0.00 0.00 39.69 4.18
1824 4707 1.698506 ACTCGATCAGGATGGGAGAC 58.301 55.000 11.69 0.00 36.16 3.36
1904 4790 9.366513 GTCTAGAACAATCACGTTAAAAGTTTC 57.633 33.333 0.00 0.00 0.00 2.78
1916 4802 4.377841 GCACTTGCAGTCTAGAACAATCAC 60.378 45.833 0.00 0.00 41.59 3.06
1936 4825 2.293122 TCAACATGCACTTAACCAGCAC 59.707 45.455 0.00 0.00 41.60 4.40
2006 4895 2.124903 CGCTCGTTTTCACTGTGTACT 58.875 47.619 7.79 0.00 0.00 2.73
2026 4915 6.103222 ACTCGTTTTCACTGTGTACTTTTC 57.897 37.500 7.79 0.00 0.00 2.29
2076 4965 2.650608 GCGTTTGAAGACCACACAATC 58.349 47.619 0.00 0.00 0.00 2.67
2323 5220 5.356882 TTCACGAAATGGATGACAGAAAC 57.643 39.130 0.00 0.00 0.00 2.78
2331 5228 3.925688 CGTACCTTCACGAAATGGATG 57.074 47.619 0.00 0.00 44.69 3.51
2346 5243 7.591006 TGAATGTAGTGAGAAAATTCGTACC 57.409 36.000 0.00 0.00 31.33 3.34
2365 5262 7.035840 CAAAAGGAGACCAGGAATATGAATG 57.964 40.000 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.