Multiple sequence alignment - TraesCS7A01G391800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G391800 chr7A 100.000 2909 0 0 1 2909 567592705 567589797 0.000000e+00 5373.0
1 TraesCS7A01G391800 chr7D 87.954 2341 141 60 232 2529 501109463 501107221 0.000000e+00 2630.0
2 TraesCS7A01G391800 chr7D 91.797 256 17 2 2654 2909 501107216 501106965 1.280000e-93 353.0
3 TraesCS7A01G391800 chr7D 100.000 28 0 0 95 122 522344925 522344898 5.000000e-03 52.8
4 TraesCS7A01G391800 chr7B 85.560 2313 178 66 92 2331 530436043 530433814 0.000000e+00 2278.0
5 TraesCS7A01G391800 chr7B 85.579 1692 115 64 370 2006 530591696 530590079 0.000000e+00 1653.0
6 TraesCS7A01G391800 chr7B 92.969 256 13 2 2656 2909 530386280 530386028 4.580000e-98 368.0
7 TraesCS7A01G391800 chr6D 94.595 37 2 0 98 134 85798353 85798389 1.130000e-04 58.4
8 TraesCS7A01G391800 chr2D 92.500 40 3 0 98 137 67220881 67220842 1.130000e-04 58.4
9 TraesCS7A01G391800 chr2B 100.000 28 0 0 95 122 666792214 666792187 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G391800 chr7A 567589797 567592705 2908 True 5373.0 5373 100.0000 1 2909 1 chr7A.!!$R1 2908
1 TraesCS7A01G391800 chr7D 501106965 501109463 2498 True 1491.5 2630 89.8755 232 2909 2 chr7D.!!$R2 2677
2 TraesCS7A01G391800 chr7B 530433814 530436043 2229 True 2278.0 2278 85.5600 92 2331 1 chr7B.!!$R2 2239
3 TraesCS7A01G391800 chr7B 530590079 530591696 1617 True 1653.0 1653 85.5790 370 2006 1 chr7B.!!$R3 1636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 476 0.253044 GCTGGTGTCCTGGCATCTAA 59.747 55.0 0.0 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2418 2556 0.179004 TGCCGTCCTTCCATTGTGTT 60.179 50.0 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.633361 GCCTTGTGTGCTACCTCTT 57.367 52.632 0.00 0.00 0.00 2.85
19 20 1.897560 GCCTTGTGTGCTACCTCTTT 58.102 50.000 0.00 0.00 0.00 2.52
20 21 3.053831 GCCTTGTGTGCTACCTCTTTA 57.946 47.619 0.00 0.00 0.00 1.85
21 22 2.742589 GCCTTGTGTGCTACCTCTTTAC 59.257 50.000 0.00 0.00 0.00 2.01
22 23 3.557264 GCCTTGTGTGCTACCTCTTTACT 60.557 47.826 0.00 0.00 0.00 2.24
23 24 4.246458 CCTTGTGTGCTACCTCTTTACTC 58.754 47.826 0.00 0.00 0.00 2.59
24 25 4.021016 CCTTGTGTGCTACCTCTTTACTCT 60.021 45.833 0.00 0.00 0.00 3.24
25 26 5.185249 CCTTGTGTGCTACCTCTTTACTCTA 59.815 44.000 0.00 0.00 0.00 2.43
26 27 6.295123 CCTTGTGTGCTACCTCTTTACTCTAA 60.295 42.308 0.00 0.00 0.00 2.10
27 28 6.268825 TGTGTGCTACCTCTTTACTCTAAG 57.731 41.667 0.00 0.00 0.00 2.18
28 29 6.008331 TGTGTGCTACCTCTTTACTCTAAGA 58.992 40.000 0.00 0.00 33.33 2.10
29 30 6.492429 TGTGTGCTACCTCTTTACTCTAAGAA 59.508 38.462 0.00 0.00 33.96 2.52
30 31 7.178628 TGTGTGCTACCTCTTTACTCTAAGAAT 59.821 37.037 0.00 0.00 33.96 2.40
31 32 8.035984 GTGTGCTACCTCTTTACTCTAAGAATT 58.964 37.037 0.00 0.00 33.96 2.17
32 33 8.594550 TGTGCTACCTCTTTACTCTAAGAATTT 58.405 33.333 0.00 0.00 33.96 1.82
33 34 8.874816 GTGCTACCTCTTTACTCTAAGAATTTG 58.125 37.037 0.00 0.00 33.96 2.32
34 35 8.812972 TGCTACCTCTTTACTCTAAGAATTTGA 58.187 33.333 0.00 0.00 33.96 2.69
35 36 9.089601 GCTACCTCTTTACTCTAAGAATTTGAC 57.910 37.037 0.00 0.00 33.96 3.18
38 39 8.871125 ACCTCTTTACTCTAAGAATTTGACTGA 58.129 33.333 0.00 0.00 33.96 3.41
39 40 9.145865 CCTCTTTACTCTAAGAATTTGACTGAC 57.854 37.037 0.00 0.00 33.96 3.51
40 41 9.145865 CTCTTTACTCTAAGAATTTGACTGACC 57.854 37.037 0.00 0.00 33.96 4.02
41 42 7.813148 TCTTTACTCTAAGAATTTGACTGACCG 59.187 37.037 0.00 0.00 31.45 4.79
42 43 5.723672 ACTCTAAGAATTTGACTGACCGA 57.276 39.130 0.00 0.00 0.00 4.69
43 44 6.287589 ACTCTAAGAATTTGACTGACCGAT 57.712 37.500 0.00 0.00 0.00 4.18
44 45 6.334202 ACTCTAAGAATTTGACTGACCGATC 58.666 40.000 0.00 0.00 0.00 3.69
45 46 5.661458 TCTAAGAATTTGACTGACCGATCC 58.339 41.667 0.00 0.00 0.00 3.36
46 47 4.559862 AAGAATTTGACTGACCGATCCT 57.440 40.909 0.00 0.00 0.00 3.24
47 48 5.677319 AAGAATTTGACTGACCGATCCTA 57.323 39.130 0.00 0.00 0.00 2.94
48 49 5.677319 AGAATTTGACTGACCGATCCTAA 57.323 39.130 0.00 0.00 0.00 2.69
49 50 6.049955 AGAATTTGACTGACCGATCCTAAA 57.950 37.500 0.00 0.00 0.00 1.85
50 51 6.472887 AGAATTTGACTGACCGATCCTAAAA 58.527 36.000 0.00 0.00 0.00 1.52
51 52 7.112779 AGAATTTGACTGACCGATCCTAAAAT 58.887 34.615 0.00 0.00 0.00 1.82
52 53 7.611855 AGAATTTGACTGACCGATCCTAAAATT 59.388 33.333 0.00 0.00 0.00 1.82
53 54 8.801882 AATTTGACTGACCGATCCTAAAATTA 57.198 30.769 0.00 0.00 0.00 1.40
54 55 7.843490 TTTGACTGACCGATCCTAAAATTAG 57.157 36.000 0.00 0.00 0.00 1.73
55 56 5.357257 TGACTGACCGATCCTAAAATTAGC 58.643 41.667 0.00 0.00 0.00 3.09
56 57 5.105106 TGACTGACCGATCCTAAAATTAGCA 60.105 40.000 0.00 0.00 0.00 3.49
57 58 5.741011 ACTGACCGATCCTAAAATTAGCAA 58.259 37.500 0.00 0.00 0.00 3.91
58 59 6.177610 ACTGACCGATCCTAAAATTAGCAAA 58.822 36.000 0.00 0.00 0.00 3.68
59 60 6.093633 ACTGACCGATCCTAAAATTAGCAAAC 59.906 38.462 0.00 0.00 0.00 2.93
60 61 5.064198 TGACCGATCCTAAAATTAGCAAACG 59.936 40.000 0.00 0.00 0.00 3.60
61 62 4.201881 ACCGATCCTAAAATTAGCAAACGC 60.202 41.667 0.00 0.00 0.00 4.84
62 63 3.960002 CGATCCTAAAATTAGCAAACGCG 59.040 43.478 3.53 3.53 0.00 6.01
63 64 3.125698 TCCTAAAATTAGCAAACGCGC 57.874 42.857 5.73 0.00 0.00 6.86
64 65 2.484651 TCCTAAAATTAGCAAACGCGCA 59.515 40.909 5.73 0.00 0.00 6.09
65 66 2.845967 CCTAAAATTAGCAAACGCGCAG 59.154 45.455 5.73 2.42 0.00 5.18
66 67 1.696988 AAAATTAGCAAACGCGCAGG 58.303 45.000 5.73 0.00 0.00 4.85
67 68 0.878416 AAATTAGCAAACGCGCAGGA 59.122 45.000 5.73 0.00 0.00 3.86
68 69 0.878416 AATTAGCAAACGCGCAGGAA 59.122 45.000 5.73 0.00 0.00 3.36
69 70 0.878416 ATTAGCAAACGCGCAGGAAA 59.122 45.000 5.73 0.00 0.00 3.13
70 71 0.878416 TTAGCAAACGCGCAGGAAAT 59.122 45.000 5.73 0.00 0.00 2.17
71 72 1.728068 TAGCAAACGCGCAGGAAATA 58.272 45.000 5.73 0.00 0.00 1.40
72 73 1.094785 AGCAAACGCGCAGGAAATAT 58.905 45.000 5.73 0.00 0.00 1.28
73 74 1.191096 GCAAACGCGCAGGAAATATG 58.809 50.000 5.73 0.00 0.00 1.78
74 75 1.467374 GCAAACGCGCAGGAAATATGT 60.467 47.619 5.73 0.00 0.00 2.29
75 76 2.176369 CAAACGCGCAGGAAATATGTG 58.824 47.619 5.73 0.00 0.00 3.21
80 81 1.762419 CGCAGGAAATATGTGCATGC 58.238 50.000 11.82 11.82 37.01 4.06
81 82 1.335810 CGCAGGAAATATGTGCATGCT 59.664 47.619 20.33 0.40 37.01 3.79
82 83 2.549329 CGCAGGAAATATGTGCATGCTA 59.451 45.455 20.33 8.52 37.01 3.49
83 84 3.607775 CGCAGGAAATATGTGCATGCTAC 60.608 47.826 20.33 15.34 37.01 3.58
84 85 3.567164 GCAGGAAATATGTGCATGCTACT 59.433 43.478 20.33 0.00 37.16 2.57
85 86 4.556104 GCAGGAAATATGTGCATGCTACTG 60.556 45.833 20.33 13.57 37.16 2.74
86 87 3.567164 AGGAAATATGTGCATGCTACTGC 59.433 43.478 20.33 4.69 42.62 4.40
87 88 3.548587 GAAATATGTGCATGCTACTGCG 58.451 45.455 20.33 0.00 45.30 5.18
99 100 3.578688 TGCTACTGCGCATGTCATATAG 58.421 45.455 12.24 6.46 43.34 1.31
109 110 4.702612 CGCATGTCATATAGTACTCCCTCT 59.297 45.833 0.00 0.00 0.00 3.69
112 113 6.379703 GCATGTCATATAGTACTCCCTCTGAT 59.620 42.308 0.00 0.00 0.00 2.90
116 117 6.948886 GTCATATAGTACTCCCTCTGATCCAA 59.051 42.308 0.00 0.00 0.00 3.53
119 120 8.820831 CATATAGTACTCCCTCTGATCCAAAAT 58.179 37.037 0.00 0.00 0.00 1.82
122 123 7.510675 AGTACTCCCTCTGATCCAAAATAAA 57.489 36.000 0.00 0.00 0.00 1.40
125 126 6.735556 ACTCCCTCTGATCCAAAATAAATGT 58.264 36.000 0.00 0.00 0.00 2.71
127 128 6.129179 TCCCTCTGATCCAAAATAAATGTCC 58.871 40.000 0.00 0.00 0.00 4.02
136 137 6.926313 TCCAAAATAAATGTCCCGGTTTAAG 58.074 36.000 0.00 0.00 0.00 1.85
140 141 2.525105 AATGTCCCGGTTTAAGCCAT 57.475 45.000 9.21 0.00 0.00 4.40
150 151 3.004315 CGGTTTAAGCCATGACACTTGTT 59.996 43.478 9.21 0.00 0.00 2.83
151 152 4.499019 CGGTTTAAGCCATGACACTTGTTT 60.499 41.667 9.21 0.00 0.00 2.83
152 153 5.356426 GGTTTAAGCCATGACACTTGTTTT 58.644 37.500 3.05 0.00 0.00 2.43
153 154 5.234116 GGTTTAAGCCATGACACTTGTTTTG 59.766 40.000 3.05 0.00 0.00 2.44
154 155 3.457610 AAGCCATGACACTTGTTTTGG 57.542 42.857 0.00 7.01 35.05 3.28
155 156 2.665165 AGCCATGACACTTGTTTTGGA 58.335 42.857 13.10 0.00 34.32 3.53
156 157 3.233507 AGCCATGACACTTGTTTTGGAT 58.766 40.909 13.10 6.21 34.32 3.41
157 158 3.256631 AGCCATGACACTTGTTTTGGATC 59.743 43.478 13.10 0.00 34.32 3.36
159 160 3.501828 CCATGACACTTGTTTTGGATCGA 59.498 43.478 0.00 0.00 34.32 3.59
160 161 4.023279 CCATGACACTTGTTTTGGATCGAA 60.023 41.667 0.00 0.00 34.32 3.71
162 163 5.168526 TGACACTTGTTTTGGATCGAAAG 57.831 39.130 3.03 0.00 0.00 2.62
163 164 4.036262 TGACACTTGTTTTGGATCGAAAGG 59.964 41.667 3.03 0.00 0.00 3.11
182 183 2.952978 AGGAGTAGTATCTTGCGAGTGG 59.047 50.000 0.00 0.00 0.00 4.00
187 188 0.527817 GTATCTTGCGAGTGGGACCG 60.528 60.000 0.00 0.00 0.00 4.79
191 192 3.220999 TTGCGAGTGGGACCGTCAG 62.221 63.158 0.00 0.00 0.00 3.51
193 194 4.436998 CGAGTGGGACCGTCAGCC 62.437 72.222 0.00 0.00 0.00 4.85
203 204 2.420129 GGACCGTCAGCCATCAGTTATT 60.420 50.000 0.00 0.00 0.00 1.40
204 205 3.181469 GGACCGTCAGCCATCAGTTATTA 60.181 47.826 0.00 0.00 0.00 0.98
205 206 4.503296 GGACCGTCAGCCATCAGTTATTAT 60.503 45.833 0.00 0.00 0.00 1.28
212 213 8.297426 CGTCAGCCATCAGTTATTATAGACTTA 58.703 37.037 0.00 0.00 0.00 2.24
308 309 7.448748 TTTTCTTGAGGTTGTAGATAAAGCC 57.551 36.000 0.00 0.00 0.00 4.35
309 310 5.755409 TCTTGAGGTTGTAGATAAAGCCA 57.245 39.130 0.00 0.00 0.00 4.75
354 356 4.070630 AGGCATTAGATCAAGAGCACTC 57.929 45.455 0.00 0.00 0.00 3.51
359 361 6.045318 GCATTAGATCAAGAGCACTCACTAA 58.955 40.000 0.00 0.00 0.00 2.24
360 362 6.019156 GCATTAGATCAAGAGCACTCACTAAC 60.019 42.308 0.00 0.00 0.00 2.34
361 363 6.590234 TTAGATCAAGAGCACTCACTAACA 57.410 37.500 0.00 0.00 0.00 2.41
362 364 5.474578 AGATCAAGAGCACTCACTAACAA 57.525 39.130 0.00 0.00 0.00 2.83
363 365 5.477510 AGATCAAGAGCACTCACTAACAAG 58.522 41.667 0.00 0.00 0.00 3.16
364 366 3.995199 TCAAGAGCACTCACTAACAAGG 58.005 45.455 0.00 0.00 0.00 3.61
365 367 3.388024 TCAAGAGCACTCACTAACAAGGT 59.612 43.478 0.00 0.00 0.00 3.50
366 368 3.669251 AGAGCACTCACTAACAAGGTC 57.331 47.619 0.00 0.00 0.00 3.85
380 382 1.133407 CAAGGTCTCTCTACACGAGGC 59.867 57.143 0.00 0.00 40.30 4.70
411 413 6.270463 TGACCAAACAGTACCATAAACCTCTA 59.730 38.462 0.00 0.00 0.00 2.43
416 418 4.465305 ACAGTACCATAAACCTCTAACGCT 59.535 41.667 0.00 0.00 0.00 5.07
423 425 1.726853 AACCTCTAACGCTGCATCAC 58.273 50.000 0.00 0.00 0.00 3.06
435 437 2.690778 GCATCACGCACCCAAGTCC 61.691 63.158 0.00 0.00 41.79 3.85
473 475 1.626356 GGCTGGTGTCCTGGCATCTA 61.626 60.000 12.66 0.00 44.90 1.98
474 476 0.253044 GCTGGTGTCCTGGCATCTAA 59.747 55.000 0.00 0.00 0.00 2.10
537 543 6.480320 GTGCTCTTATCGTTCCAATATCTTGT 59.520 38.462 0.00 0.00 0.00 3.16
539 545 8.367911 TGCTCTTATCGTTCCAATATCTTGTAT 58.632 33.333 0.00 0.00 0.00 2.29
540 546 8.651588 GCTCTTATCGTTCCAATATCTTGTATG 58.348 37.037 0.00 0.00 0.00 2.39
541 547 8.534333 TCTTATCGTTCCAATATCTTGTATGC 57.466 34.615 0.00 0.00 0.00 3.14
542 548 5.845985 ATCGTTCCAATATCTTGTATGCG 57.154 39.130 0.00 0.00 0.00 4.73
543 549 3.493129 TCGTTCCAATATCTTGTATGCGC 59.507 43.478 0.00 0.00 0.00 6.09
545 551 4.260579 CGTTCCAATATCTTGTATGCGCAA 60.261 41.667 17.11 0.11 0.00 4.85
546 552 5.577835 GTTCCAATATCTTGTATGCGCAAA 58.422 37.500 17.11 2.84 0.00 3.68
547 553 5.422666 TCCAATATCTTGTATGCGCAAAG 57.577 39.130 17.11 14.60 0.00 2.77
548 554 5.122519 TCCAATATCTTGTATGCGCAAAGA 58.877 37.500 21.63 21.63 0.00 2.52
549 555 5.588246 TCCAATATCTTGTATGCGCAAAGAA 59.412 36.000 22.80 14.23 0.00 2.52
550 556 6.094742 TCCAATATCTTGTATGCGCAAAGAAA 59.905 34.615 22.80 11.42 0.00 2.52
584 590 2.175811 GTTCCATCGCGTTGCCAC 59.824 61.111 11.68 6.45 0.00 5.01
585 591 2.031919 TTCCATCGCGTTGCCACT 59.968 55.556 11.68 0.00 0.00 4.00
586 592 1.599518 TTCCATCGCGTTGCCACTT 60.600 52.632 11.68 0.00 0.00 3.16
628 638 0.673956 GGCTGAAGACCCTCCGTTTC 60.674 60.000 0.00 0.00 0.00 2.78
636 646 1.966451 CCCTCCGTTTCTGCACACC 60.966 63.158 0.00 0.00 0.00 4.16
639 649 1.284982 CTCCGTTTCTGCACACCGAG 61.285 60.000 0.00 0.00 0.00 4.63
654 665 6.071560 TGCACACCGAGTATATTTATAGGAGG 60.072 42.308 0.00 0.00 0.00 4.30
655 666 6.152323 GCACACCGAGTATATTTATAGGAGGA 59.848 42.308 0.00 0.00 0.00 3.71
656 667 7.309621 GCACACCGAGTATATTTATAGGAGGAA 60.310 40.741 0.00 0.00 0.00 3.36
705 716 2.223377 CAGCCAACTCAGTAACGGAAAC 59.777 50.000 0.00 0.00 0.00 2.78
711 722 5.524646 CCAACTCAGTAACGGAAACTAACAA 59.475 40.000 0.00 0.00 0.00 2.83
712 723 6.204108 CCAACTCAGTAACGGAAACTAACAAT 59.796 38.462 0.00 0.00 0.00 2.71
734 745 2.341257 CAAGATGTTCAGACTCCACGG 58.659 52.381 0.00 0.00 0.00 4.94
743 754 3.499338 TCAGACTCCACGGTTTAACCTA 58.501 45.455 12.66 0.00 35.66 3.08
745 756 5.263599 TCAGACTCCACGGTTTAACCTATA 58.736 41.667 12.66 0.00 35.66 1.31
764 775 0.379316 ACAACCGCCAAGAAAACGAC 59.621 50.000 0.00 0.00 0.00 4.34
804 818 4.122046 TGGTGATCTACGATTCAATGCAG 58.878 43.478 0.00 0.00 0.00 4.41
808 831 2.554142 TCTACGATTCAATGCAGCCAG 58.446 47.619 0.00 0.00 0.00 4.85
809 832 1.003116 CTACGATTCAATGCAGCCAGC 60.003 52.381 0.00 0.00 45.96 4.85
810 833 1.065273 CGATTCAATGCAGCCAGCC 59.935 57.895 0.00 0.00 44.83 4.85
813 836 0.535335 ATTCAATGCAGCCAGCCTTG 59.465 50.000 9.50 9.50 46.36 3.61
814 837 1.537814 TTCAATGCAGCCAGCCTTGG 61.538 55.000 13.90 0.00 45.44 3.61
824 847 2.375173 CCAGCCTTGGCAAAATTCTC 57.625 50.000 14.54 0.00 37.73 2.87
825 848 1.066645 CCAGCCTTGGCAAAATTCTCC 60.067 52.381 14.54 0.00 37.73 3.71
826 849 1.066645 CAGCCTTGGCAAAATTCTCCC 60.067 52.381 14.54 0.00 0.00 4.30
827 850 0.975887 GCCTTGGCAAAATTCTCCCA 59.024 50.000 6.79 0.00 0.00 4.37
828 851 1.066645 GCCTTGGCAAAATTCTCCCAG 60.067 52.381 6.79 0.00 0.00 4.45
829 852 1.066645 CCTTGGCAAAATTCTCCCAGC 60.067 52.381 0.00 0.00 0.00 4.85
830 853 1.619827 CTTGGCAAAATTCTCCCAGCA 59.380 47.619 0.00 0.00 0.00 4.41
831 854 1.714541 TGGCAAAATTCTCCCAGCAA 58.285 45.000 0.00 0.00 0.00 3.91
832 855 2.045524 TGGCAAAATTCTCCCAGCAAA 58.954 42.857 0.00 0.00 0.00 3.68
833 856 2.437281 TGGCAAAATTCTCCCAGCAAAA 59.563 40.909 0.00 0.00 0.00 2.44
834 857 3.069289 GGCAAAATTCTCCCAGCAAAAG 58.931 45.455 0.00 0.00 0.00 2.27
835 858 3.244181 GGCAAAATTCTCCCAGCAAAAGA 60.244 43.478 0.00 0.00 0.00 2.52
844 867 1.154338 CAGCAAAAGAGGAAGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
876 899 4.351938 TCGACACCGCACGGGAAG 62.352 66.667 14.51 5.52 39.97 3.46
880 903 3.411351 CACCGCACGGGAAGAACG 61.411 66.667 14.51 0.00 39.97 3.95
881 904 3.920196 ACCGCACGGGAAGAACGT 61.920 61.111 14.51 0.00 46.82 3.99
932 957 1.520174 TGACGACGACGACGATCTATC 59.480 52.381 25.15 12.52 42.66 2.08
933 958 1.520174 GACGACGACGACGATCTATCA 59.480 52.381 25.15 0.00 42.66 2.15
934 959 2.133553 ACGACGACGACGATCTATCAT 58.866 47.619 25.15 0.00 42.66 2.45
935 960 2.155347 ACGACGACGACGATCTATCATC 59.845 50.000 25.15 0.00 42.66 2.92
947 975 5.163632 ACGATCTATCATCTCTATGCTGCTG 60.164 44.000 0.00 0.00 32.76 4.41
1000 1032 1.670811 CGGATCCCAGAAAAACCATCG 59.329 52.381 6.06 0.00 0.00 3.84
1167 1221 0.396556 TCCCTCCATCCATTCGACGA 60.397 55.000 0.00 0.00 0.00 4.20
1196 1252 0.972883 GTGAGAGAGTGGCCTTCTGT 59.027 55.000 14.04 10.54 0.00 3.41
1210 1276 4.202367 GGCCTTCTGTATACATAGCAACCT 60.202 45.833 5.91 0.00 0.00 3.50
1211 1277 4.991687 GCCTTCTGTATACATAGCAACCTC 59.008 45.833 5.91 0.00 0.00 3.85
1212 1278 5.542779 CCTTCTGTATACATAGCAACCTCC 58.457 45.833 5.91 0.00 0.00 4.30
1213 1279 4.848562 TCTGTATACATAGCAACCTCCG 57.151 45.455 5.91 0.00 0.00 4.63
1226 1299 2.202851 CTCCGTAGCAGCAGCAGG 60.203 66.667 3.17 3.87 45.49 4.85
1231 1304 2.105466 GTAGCAGCAGCAGGAGCAC 61.105 63.158 3.17 0.00 45.49 4.40
1773 1865 1.858458 CGTAGGATCCGACGTACGTAA 59.142 52.381 31.93 10.48 44.17 3.18
1774 1866 2.347661 CGTAGGATCCGACGTACGTAAC 60.348 54.545 31.93 9.08 44.17 2.50
1775 1867 1.737838 AGGATCCGACGTACGTAACA 58.262 50.000 22.87 8.03 40.78 2.41
1780 1872 0.636733 CCGACGTACGTAACACATGC 59.363 55.000 22.87 5.09 40.78 4.06
1782 1874 1.605500 GACGTACGTAACACATGCGA 58.394 50.000 22.87 0.00 39.78 5.10
1789 1881 0.044161 GTAACACATGCGATCGCGAC 60.044 55.000 32.64 17.68 45.51 5.19
1802 1899 0.937304 TCGCGACCGTAGTATACACC 59.063 55.000 3.71 0.00 43.24 4.16
1823 1920 4.962362 ACCAGGACGATGATATATGCCATA 59.038 41.667 0.00 0.00 0.00 2.74
1897 1998 1.111277 TTCATCGATCGGGCTCTTGA 58.889 50.000 16.41 6.50 0.00 3.02
1923 2024 2.411904 CTCACTCCTGCTTCAGTGAAC 58.588 52.381 0.08 0.16 46.55 3.18
1937 2038 4.847198 TCAGTGAACCACTACTCCGTATA 58.153 43.478 0.00 0.00 43.43 1.47
1964 2069 0.882484 TTCGTTGGCTGCAACATCGA 60.882 50.000 15.93 15.93 38.02 3.59
1969 2074 1.825090 TGGCTGCAACATCGATCTTT 58.175 45.000 0.50 0.00 0.00 2.52
1980 2087 4.169508 ACATCGATCTTTCTTGAGTGACG 58.830 43.478 0.00 0.00 0.00 4.35
1984 2091 2.440539 TCTTTCTTGAGTGACGCTCC 57.559 50.000 13.36 0.00 43.48 4.70
1987 2094 3.057456 TCTTTCTTGAGTGACGCTCCTAC 60.057 47.826 13.36 0.00 43.48 3.18
2106 2216 3.150767 ACTCGCCATAGACCATCTAGTC 58.849 50.000 0.00 0.00 31.67 2.59
2144 2276 3.071023 CAGGAAGAGTAACCAGTGTCCAA 59.929 47.826 0.00 0.00 0.00 3.53
2183 2315 2.574399 GCGTCAGACACCTCCTCC 59.426 66.667 0.41 0.00 0.00 4.30
2227 2359 2.136298 TGTCAAAGTGCCAACCTTCA 57.864 45.000 0.00 0.00 0.00 3.02
2316 2454 0.543277 ATCAGACCGGCATCATGTGT 59.457 50.000 0.00 0.00 0.00 3.72
2337 2475 5.064834 GTGTGCATAAGAGTTTAGGCCTTAC 59.935 44.000 12.58 10.39 43.89 2.34
2374 2512 0.036732 CTGTAGCCTGCCTGAACCAA 59.963 55.000 0.00 0.00 0.00 3.67
2378 2516 0.407139 AGCCTGCCTGAACCAAGAAT 59.593 50.000 0.00 0.00 0.00 2.40
2381 2519 1.815003 CCTGCCTGAACCAAGAATCAC 59.185 52.381 0.00 0.00 0.00 3.06
2389 2527 3.631686 TGAACCAAGAATCACAACACAGG 59.368 43.478 0.00 0.00 0.00 4.00
2399 2537 4.974645 TCACAACACAGGATAAAGGACT 57.025 40.909 0.00 0.00 0.00 3.85
2400 2538 4.641396 TCACAACACAGGATAAAGGACTG 58.359 43.478 0.00 0.00 38.19 3.51
2418 2556 4.022068 GGACTGAAACCTTGAAATGCATCA 60.022 41.667 0.00 0.00 0.00 3.07
2424 2562 4.669206 ACCTTGAAATGCATCAACACAA 57.331 36.364 0.00 2.11 35.55 3.33
2435 2573 1.890876 TCAACACAATGGAAGGACGG 58.109 50.000 0.00 0.00 0.00 4.79
2481 2619 0.177604 CAGGGCAACAAAAACTGGCA 59.822 50.000 0.00 0.00 39.76 4.92
2482 2620 0.465287 AGGGCAACAAAAACTGGCAG 59.535 50.000 14.16 14.16 39.76 4.85
2483 2621 0.177836 GGGCAACAAAAACTGGCAGT 59.822 50.000 15.88 15.88 39.76 4.40
2501 2639 3.125316 GCAGTATTTCTGAACCAGGAACG 59.875 47.826 0.00 0.00 46.27 3.95
2502 2640 3.684788 CAGTATTTCTGAACCAGGAACGG 59.315 47.826 0.00 0.00 46.27 4.44
2529 2667 1.387295 GCCATAAGCTGTTCCAGGCC 61.387 60.000 0.00 0.00 38.99 5.19
2530 2668 1.097547 CCATAAGCTGTTCCAGGCCG 61.098 60.000 0.00 0.00 31.21 6.13
2531 2669 0.107703 CATAAGCTGTTCCAGGCCGA 60.108 55.000 0.00 0.00 31.21 5.54
2533 2671 0.321298 TAAGCTGTTCCAGGCCGAAC 60.321 55.000 14.63 14.63 42.10 3.95
2534 2672 2.032681 GCTGTTCCAGGCCGAACT 59.967 61.111 20.09 0.00 42.22 3.01
2535 2673 1.600916 GCTGTTCCAGGCCGAACTT 60.601 57.895 20.09 0.00 42.22 2.66
2536 2674 1.856265 GCTGTTCCAGGCCGAACTTG 61.856 60.000 20.09 14.80 42.22 3.16
2537 2675 1.856265 CTGTTCCAGGCCGAACTTGC 61.856 60.000 20.09 1.43 42.22 4.01
2538 2676 1.896660 GTTCCAGGCCGAACTTGCA 60.897 57.895 14.32 0.00 39.27 4.08
2539 2677 1.600636 TTCCAGGCCGAACTTGCAG 60.601 57.895 0.00 0.00 0.00 4.41
2540 2678 3.741476 CCAGGCCGAACTTGCAGC 61.741 66.667 0.00 0.00 0.00 5.25
2541 2679 2.979676 CAGGCCGAACTTGCAGCA 60.980 61.111 0.00 0.00 0.00 4.41
2542 2680 2.670934 AGGCCGAACTTGCAGCAG 60.671 61.111 0.00 0.00 0.00 4.24
2543 2681 2.669569 GGCCGAACTTGCAGCAGA 60.670 61.111 0.00 0.00 0.00 4.26
2544 2682 2.558313 GCCGAACTTGCAGCAGAC 59.442 61.111 0.00 0.00 0.00 3.51
2545 2683 2.856032 CCGAACTTGCAGCAGACG 59.144 61.111 0.00 0.58 0.00 4.18
2546 2684 2.171940 CGAACTTGCAGCAGACGC 59.828 61.111 0.00 0.00 38.99 5.19
2547 2685 2.171940 GAACTTGCAGCAGACGCG 59.828 61.111 3.53 3.53 45.49 6.01
2548 2686 2.588877 AACTTGCAGCAGACGCGT 60.589 55.556 13.85 13.85 45.49 6.01
2549 2687 2.754805 GAACTTGCAGCAGACGCGTG 62.755 60.000 20.70 3.81 45.49 5.34
2550 2688 3.341043 CTTGCAGCAGACGCGTGT 61.341 61.111 20.70 11.10 45.49 4.49
2551 2689 2.885676 CTTGCAGCAGACGCGTGTT 61.886 57.895 20.70 0.37 45.49 3.32
2552 2690 1.556591 CTTGCAGCAGACGCGTGTTA 61.557 55.000 20.70 0.00 45.49 2.41
2553 2691 1.556591 TTGCAGCAGACGCGTGTTAG 61.557 55.000 20.70 2.05 45.49 2.34
2554 2692 2.772189 CAGCAGACGCGTGTTAGC 59.228 61.111 20.70 14.33 45.49 3.09
2555 2693 2.432628 AGCAGACGCGTGTTAGCC 60.433 61.111 20.70 0.00 45.49 3.93
2556 2694 3.838795 GCAGACGCGTGTTAGCCG 61.839 66.667 20.70 0.20 0.00 5.52
2557 2695 2.430244 CAGACGCGTGTTAGCCGT 60.430 61.111 20.70 0.00 0.00 5.68
2558 2696 2.430244 AGACGCGTGTTAGCCGTG 60.430 61.111 20.70 0.00 41.34 4.94
2560 2698 2.279650 ACGCGTGTTAGCCGTGTT 60.280 55.556 12.93 0.00 45.80 3.32
2561 2699 2.305127 ACGCGTGTTAGCCGTGTTC 61.305 57.895 12.93 0.00 45.80 3.18
2562 2700 2.304401 CGCGTGTTAGCCGTGTTCA 61.304 57.895 0.00 0.00 0.00 3.18
2563 2701 1.491563 GCGTGTTAGCCGTGTTCAG 59.508 57.895 0.00 0.00 0.00 3.02
2564 2702 1.491563 CGTGTTAGCCGTGTTCAGC 59.508 57.895 0.00 0.00 0.00 4.26
2565 2703 1.218875 CGTGTTAGCCGTGTTCAGCA 61.219 55.000 0.00 0.00 0.00 4.41
2566 2704 0.512952 GTGTTAGCCGTGTTCAGCAG 59.487 55.000 0.00 0.00 0.00 4.24
2567 2705 0.391228 TGTTAGCCGTGTTCAGCAGA 59.609 50.000 0.00 0.00 0.00 4.26
2568 2706 1.071605 GTTAGCCGTGTTCAGCAGAG 58.928 55.000 0.00 0.00 0.00 3.35
2569 2707 0.966179 TTAGCCGTGTTCAGCAGAGA 59.034 50.000 0.00 0.00 0.00 3.10
2570 2708 0.243907 TAGCCGTGTTCAGCAGAGAC 59.756 55.000 0.00 0.00 0.00 3.36
2571 2709 2.029844 GCCGTGTTCAGCAGAGACC 61.030 63.158 0.00 0.00 0.00 3.85
2572 2710 1.367471 CCGTGTTCAGCAGAGACCA 59.633 57.895 0.00 0.00 0.00 4.02
2573 2711 0.946221 CCGTGTTCAGCAGAGACCAC 60.946 60.000 0.00 0.00 0.00 4.16
2574 2712 1.278172 CGTGTTCAGCAGAGACCACG 61.278 60.000 8.85 8.85 36.55 4.94
2575 2713 0.946221 GTGTTCAGCAGAGACCACGG 60.946 60.000 0.00 0.00 0.00 4.94
2576 2714 1.112916 TGTTCAGCAGAGACCACGGA 61.113 55.000 0.00 0.00 0.00 4.69
2577 2715 0.247736 GTTCAGCAGAGACCACGGAT 59.752 55.000 0.00 0.00 0.00 4.18
2578 2716 0.532573 TTCAGCAGAGACCACGGATC 59.467 55.000 0.00 0.00 0.00 3.36
2579 2717 1.226802 CAGCAGAGACCACGGATCG 60.227 63.158 0.00 0.00 0.00 3.69
2580 2718 2.583593 GCAGAGACCACGGATCGC 60.584 66.667 0.00 0.00 0.00 4.58
2581 2719 2.885113 CAGAGACCACGGATCGCA 59.115 61.111 0.00 0.00 0.00 5.10
2582 2720 1.215382 CAGAGACCACGGATCGCAA 59.785 57.895 0.00 0.00 0.00 4.85
2583 2721 0.803768 CAGAGACCACGGATCGCAAG 60.804 60.000 0.00 0.00 0.00 4.01
2584 2722 1.519455 GAGACCACGGATCGCAAGG 60.519 63.158 0.00 0.00 38.47 3.61
2585 2723 3.195698 GACCACGGATCGCAAGGC 61.196 66.667 0.00 0.00 38.47 4.35
2597 2735 3.784845 GCAAGGCGATTTCGGAAAA 57.215 47.368 7.33 0.00 40.23 2.29
2598 2736 2.278026 GCAAGGCGATTTCGGAAAAT 57.722 45.000 7.33 0.00 40.23 1.82
2599 2737 3.414549 GCAAGGCGATTTCGGAAAATA 57.585 42.857 7.33 0.00 40.23 1.40
2600 2738 3.964909 GCAAGGCGATTTCGGAAAATAT 58.035 40.909 7.33 0.00 40.23 1.28
2601 2739 3.975035 GCAAGGCGATTTCGGAAAATATC 59.025 43.478 7.33 0.09 40.23 1.63
2602 2740 4.211389 CAAGGCGATTTCGGAAAATATCG 58.789 43.478 16.51 16.51 40.23 2.92
2603 2741 3.463944 AGGCGATTTCGGAAAATATCGT 58.536 40.909 19.88 5.13 40.23 3.73
2604 2742 3.493503 AGGCGATTTCGGAAAATATCGTC 59.506 43.478 17.21 17.21 40.23 4.20
2605 2743 3.246699 GGCGATTTCGGAAAATATCGTCA 59.753 43.478 19.03 0.00 33.72 4.35
2606 2744 4.446234 GCGATTTCGGAAAATATCGTCAG 58.554 43.478 19.88 6.80 40.23 3.51
2607 2745 4.446234 CGATTTCGGAAAATATCGTCAGC 58.554 43.478 7.33 0.00 35.21 4.26
2608 2746 4.608445 CGATTTCGGAAAATATCGTCAGCC 60.608 45.833 7.33 0.00 35.21 4.85
2609 2747 2.234300 TCGGAAAATATCGTCAGCCC 57.766 50.000 0.00 0.00 0.00 5.19
2610 2748 1.483004 TCGGAAAATATCGTCAGCCCA 59.517 47.619 0.00 0.00 0.00 5.36
2611 2749 2.093394 TCGGAAAATATCGTCAGCCCAA 60.093 45.455 0.00 0.00 0.00 4.12
2612 2750 2.878406 CGGAAAATATCGTCAGCCCAAT 59.122 45.455 0.00 0.00 0.00 3.16
2613 2751 4.062293 CGGAAAATATCGTCAGCCCAATA 58.938 43.478 0.00 0.00 0.00 1.90
2614 2752 4.695455 CGGAAAATATCGTCAGCCCAATAT 59.305 41.667 0.00 0.00 0.00 1.28
2615 2753 5.390885 CGGAAAATATCGTCAGCCCAATATG 60.391 44.000 0.00 0.00 0.00 1.78
2616 2754 5.106157 GGAAAATATCGTCAGCCCAATATGG 60.106 44.000 0.00 0.00 37.25 2.74
2623 2761 4.282881 GCCCAATATGGCCAGCTT 57.717 55.556 13.05 3.85 46.11 3.74
2624 2762 2.044452 GCCCAATATGGCCAGCTTC 58.956 57.895 13.05 0.00 46.11 3.86
2625 2763 1.799258 GCCCAATATGGCCAGCTTCG 61.799 60.000 13.05 0.00 46.11 3.79
2626 2764 1.174712 CCCAATATGGCCAGCTTCGG 61.175 60.000 13.05 7.83 35.79 4.30
2627 2765 0.179020 CCAATATGGCCAGCTTCGGA 60.179 55.000 13.05 0.00 0.00 4.55
2628 2766 1.546323 CCAATATGGCCAGCTTCGGAT 60.546 52.381 13.05 0.00 0.00 4.18
2629 2767 2.233271 CAATATGGCCAGCTTCGGATT 58.767 47.619 13.05 0.00 0.00 3.01
2630 2768 2.624838 CAATATGGCCAGCTTCGGATTT 59.375 45.455 13.05 0.00 0.00 2.17
2631 2769 2.435372 TATGGCCAGCTTCGGATTTT 57.565 45.000 13.05 0.00 0.00 1.82
2632 2770 2.435372 ATGGCCAGCTTCGGATTTTA 57.565 45.000 13.05 0.00 0.00 1.52
2633 2771 1.750193 TGGCCAGCTTCGGATTTTAG 58.250 50.000 0.00 0.00 0.00 1.85
2634 2772 0.382158 GGCCAGCTTCGGATTTTAGC 59.618 55.000 0.00 0.00 35.16 3.09
2635 2773 1.383523 GCCAGCTTCGGATTTTAGCT 58.616 50.000 0.00 0.00 45.64 3.32
2636 2774 1.332065 GCCAGCTTCGGATTTTAGCTC 59.668 52.381 0.00 0.00 43.04 4.09
2637 2775 2.632377 CCAGCTTCGGATTTTAGCTCA 58.368 47.619 0.00 0.00 43.04 4.26
2638 2776 3.009723 CCAGCTTCGGATTTTAGCTCAA 58.990 45.455 0.00 0.00 43.04 3.02
2639 2777 3.064545 CCAGCTTCGGATTTTAGCTCAAG 59.935 47.826 0.00 0.00 43.04 3.02
2640 2778 3.935203 CAGCTTCGGATTTTAGCTCAAGA 59.065 43.478 0.00 0.00 43.04 3.02
2641 2779 4.033817 CAGCTTCGGATTTTAGCTCAAGAG 59.966 45.833 0.00 0.00 43.04 2.85
2642 2780 4.081420 AGCTTCGGATTTTAGCTCAAGAGA 60.081 41.667 0.32 0.00 41.15 3.10
2643 2781 4.631813 GCTTCGGATTTTAGCTCAAGAGAA 59.368 41.667 0.32 0.00 32.26 2.87
2644 2782 5.446607 GCTTCGGATTTTAGCTCAAGAGAAC 60.447 44.000 0.32 0.00 32.26 3.01
2645 2783 5.147330 TCGGATTTTAGCTCAAGAGAACA 57.853 39.130 0.32 0.00 0.00 3.18
2646 2784 5.547465 TCGGATTTTAGCTCAAGAGAACAA 58.453 37.500 0.32 0.00 0.00 2.83
2647 2785 5.639506 TCGGATTTTAGCTCAAGAGAACAAG 59.360 40.000 0.32 0.00 0.00 3.16
2648 2786 5.639506 CGGATTTTAGCTCAAGAGAACAAGA 59.360 40.000 0.32 0.00 0.00 3.02
2649 2787 6.401581 CGGATTTTAGCTCAAGAGAACAAGAC 60.402 42.308 0.32 0.00 0.00 3.01
2650 2788 6.652900 GGATTTTAGCTCAAGAGAACAAGACT 59.347 38.462 0.32 0.00 0.00 3.24
2651 2789 6.851222 TTTTAGCTCAAGAGAACAAGACTG 57.149 37.500 0.32 0.00 0.00 3.51
2652 2790 3.399440 AGCTCAAGAGAACAAGACTGG 57.601 47.619 0.32 0.00 0.00 4.00
2674 2812 3.304057 GGAACAAGAGCAAGTGCAGTAAC 60.304 47.826 6.00 0.00 45.16 2.50
2700 2838 9.632969 CACTTATTAGAAACAATTCGATAACCG 57.367 33.333 0.00 0.00 40.63 4.44
2708 2846 4.773013 ACAATTCGATAACCGGTTATGGT 58.227 39.130 38.01 20.63 46.67 3.55
2714 2852 5.350633 TCGATAACCGGTTATGGTAACAAG 58.649 41.667 38.01 19.71 45.46 3.16
2744 2882 4.408596 ACAACCAGTCAAACCATGGAAATT 59.591 37.500 21.47 7.57 37.54 1.82
2764 2902 1.485124 ATGGAGTGCCGTCTACATCA 58.515 50.000 0.00 0.00 34.22 3.07
2793 2931 8.992287 AATCTTGCAAAACGAATTGAAAAATC 57.008 26.923 0.00 0.00 27.52 2.17
2794 2932 6.942891 TCTTGCAAAACGAATTGAAAAATCC 58.057 32.000 0.00 0.00 27.52 3.01
2799 2937 6.524490 CAAAACGAATTGAAAAATCCGATGG 58.476 36.000 0.00 0.00 31.84 3.51
2825 2963 3.008049 ACTGTGATTGGTCAGGTAACCTC 59.992 47.826 0.00 0.00 40.20 3.85
2826 2964 2.304761 TGTGATTGGTCAGGTAACCTCC 59.695 50.000 0.00 0.00 40.20 4.30
2836 2974 2.375509 CAGGTAACCTCCCCTTTCAGTT 59.624 50.000 0.00 0.00 37.17 3.16
2858 2996 4.530710 TTCCACTTAAGACGCACACTAT 57.469 40.909 10.09 0.00 0.00 2.12
2871 3009 1.460743 CACACTATGAACACCGCACAG 59.539 52.381 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.897560 AAAGAGGTAGCACACAAGGC 58.102 50.000 0.00 0.00 0.00 4.35
1 2 4.021016 AGAGTAAAGAGGTAGCACACAAGG 60.021 45.833 0.00 0.00 0.00 3.61
2 3 5.140747 AGAGTAAAGAGGTAGCACACAAG 57.859 43.478 0.00 0.00 0.00 3.16
3 4 6.492429 TCTTAGAGTAAAGAGGTAGCACACAA 59.508 38.462 0.00 0.00 31.85 3.33
4 5 6.008331 TCTTAGAGTAAAGAGGTAGCACACA 58.992 40.000 0.00 0.00 31.85 3.72
5 6 6.512342 TCTTAGAGTAAAGAGGTAGCACAC 57.488 41.667 0.00 0.00 31.85 3.82
6 7 7.719871 ATTCTTAGAGTAAAGAGGTAGCACA 57.280 36.000 0.00 0.00 36.85 4.57
7 8 8.874816 CAAATTCTTAGAGTAAAGAGGTAGCAC 58.125 37.037 0.00 0.00 36.85 4.40
8 9 8.812972 TCAAATTCTTAGAGTAAAGAGGTAGCA 58.187 33.333 0.00 0.00 36.85 3.49
9 10 9.089601 GTCAAATTCTTAGAGTAAAGAGGTAGC 57.910 37.037 0.00 0.00 36.85 3.58
12 13 8.871125 TCAGTCAAATTCTTAGAGTAAAGAGGT 58.129 33.333 0.00 0.00 36.85 3.85
13 14 9.145865 GTCAGTCAAATTCTTAGAGTAAAGAGG 57.854 37.037 0.00 0.00 36.85 3.69
14 15 9.145865 GGTCAGTCAAATTCTTAGAGTAAAGAG 57.854 37.037 0.00 0.00 36.85 2.85
15 16 7.813148 CGGTCAGTCAAATTCTTAGAGTAAAGA 59.187 37.037 0.00 0.00 33.69 2.52
16 17 7.813148 TCGGTCAGTCAAATTCTTAGAGTAAAG 59.187 37.037 0.00 0.00 0.00 1.85
17 18 7.663827 TCGGTCAGTCAAATTCTTAGAGTAAA 58.336 34.615 0.00 0.00 0.00 2.01
18 19 7.223260 TCGGTCAGTCAAATTCTTAGAGTAA 57.777 36.000 0.00 0.00 0.00 2.24
19 20 6.829229 TCGGTCAGTCAAATTCTTAGAGTA 57.171 37.500 0.00 0.00 0.00 2.59
20 21 5.723672 TCGGTCAGTCAAATTCTTAGAGT 57.276 39.130 0.00 0.00 0.00 3.24
21 22 5.751028 GGATCGGTCAGTCAAATTCTTAGAG 59.249 44.000 0.00 0.00 0.00 2.43
22 23 5.422331 AGGATCGGTCAGTCAAATTCTTAGA 59.578 40.000 0.00 0.00 0.00 2.10
23 24 5.665459 AGGATCGGTCAGTCAAATTCTTAG 58.335 41.667 0.00 0.00 0.00 2.18
24 25 5.677319 AGGATCGGTCAGTCAAATTCTTA 57.323 39.130 0.00 0.00 0.00 2.10
25 26 4.559862 AGGATCGGTCAGTCAAATTCTT 57.440 40.909 0.00 0.00 0.00 2.52
26 27 5.677319 TTAGGATCGGTCAGTCAAATTCT 57.323 39.130 0.00 0.00 0.00 2.40
27 28 6.737254 TTTTAGGATCGGTCAGTCAAATTC 57.263 37.500 0.00 0.00 0.00 2.17
28 29 7.703058 AATTTTAGGATCGGTCAGTCAAATT 57.297 32.000 0.00 0.03 0.00 1.82
29 30 7.012421 GCTAATTTTAGGATCGGTCAGTCAAAT 59.988 37.037 0.00 0.00 0.00 2.32
30 31 6.315393 GCTAATTTTAGGATCGGTCAGTCAAA 59.685 38.462 0.00 0.00 0.00 2.69
31 32 5.815740 GCTAATTTTAGGATCGGTCAGTCAA 59.184 40.000 0.00 0.00 0.00 3.18
32 33 5.105106 TGCTAATTTTAGGATCGGTCAGTCA 60.105 40.000 0.00 0.00 0.00 3.41
33 34 5.357257 TGCTAATTTTAGGATCGGTCAGTC 58.643 41.667 0.00 0.00 0.00 3.51
34 35 5.353394 TGCTAATTTTAGGATCGGTCAGT 57.647 39.130 0.00 0.00 0.00 3.41
35 36 6.487103 GTTTGCTAATTTTAGGATCGGTCAG 58.513 40.000 0.00 0.00 31.02 3.51
36 37 5.064198 CGTTTGCTAATTTTAGGATCGGTCA 59.936 40.000 0.00 0.00 31.02 4.02
37 38 5.499047 CGTTTGCTAATTTTAGGATCGGTC 58.501 41.667 0.00 0.00 31.02 4.79
38 39 4.201881 GCGTTTGCTAATTTTAGGATCGGT 60.202 41.667 13.77 0.00 38.39 4.69
39 40 4.279659 GCGTTTGCTAATTTTAGGATCGG 58.720 43.478 13.77 1.75 38.39 4.18
40 41 3.960002 CGCGTTTGCTAATTTTAGGATCG 59.040 43.478 0.00 10.24 39.65 3.69
41 42 3.724257 GCGCGTTTGCTAATTTTAGGATC 59.276 43.478 8.43 0.00 39.65 3.36
42 43 3.127895 TGCGCGTTTGCTAATTTTAGGAT 59.872 39.130 8.43 0.00 39.65 3.24
43 44 2.484651 TGCGCGTTTGCTAATTTTAGGA 59.515 40.909 8.43 0.00 39.65 2.94
44 45 2.845967 CTGCGCGTTTGCTAATTTTAGG 59.154 45.455 8.43 0.00 39.65 2.69
45 46 2.845967 CCTGCGCGTTTGCTAATTTTAG 59.154 45.455 8.43 0.00 39.65 1.85
46 47 2.484651 TCCTGCGCGTTTGCTAATTTTA 59.515 40.909 8.43 0.00 39.65 1.52
47 48 1.268352 TCCTGCGCGTTTGCTAATTTT 59.732 42.857 8.43 0.00 39.65 1.82
48 49 0.878416 TCCTGCGCGTTTGCTAATTT 59.122 45.000 8.43 0.00 39.65 1.82
49 50 0.878416 TTCCTGCGCGTTTGCTAATT 59.122 45.000 8.43 0.00 39.65 1.40
50 51 0.878416 TTTCCTGCGCGTTTGCTAAT 59.122 45.000 8.43 0.00 39.65 1.73
51 52 0.878416 ATTTCCTGCGCGTTTGCTAA 59.122 45.000 8.43 0.00 39.65 3.09
52 53 1.728068 TATTTCCTGCGCGTTTGCTA 58.272 45.000 8.43 0.00 39.65 3.49
53 54 1.094785 ATATTTCCTGCGCGTTTGCT 58.905 45.000 8.43 0.00 39.65 3.91
54 55 1.191096 CATATTTCCTGCGCGTTTGC 58.809 50.000 8.43 0.00 37.91 3.68
55 56 2.176369 CACATATTTCCTGCGCGTTTG 58.824 47.619 8.43 0.00 0.00 2.93
56 57 1.467374 GCACATATTTCCTGCGCGTTT 60.467 47.619 8.43 0.00 0.00 3.60
57 58 0.098728 GCACATATTTCCTGCGCGTT 59.901 50.000 8.43 0.00 0.00 4.84
58 59 1.024046 TGCACATATTTCCTGCGCGT 61.024 50.000 8.43 0.00 33.35 6.01
59 60 0.308684 ATGCACATATTTCCTGCGCG 59.691 50.000 0.00 0.00 33.35 6.86
60 61 1.762419 CATGCACATATTTCCTGCGC 58.238 50.000 0.00 0.00 33.35 6.09
61 62 1.335810 AGCATGCACATATTTCCTGCG 59.664 47.619 21.98 0.00 33.35 5.18
62 63 3.567164 AGTAGCATGCACATATTTCCTGC 59.433 43.478 21.98 0.00 0.00 4.85
63 64 4.556104 GCAGTAGCATGCACATATTTCCTG 60.556 45.833 21.98 11.70 45.77 3.86
64 65 3.567164 GCAGTAGCATGCACATATTTCCT 59.433 43.478 21.98 0.00 45.77 3.36
65 66 3.607775 CGCAGTAGCATGCACATATTTCC 60.608 47.826 21.98 0.00 46.87 3.13
66 67 3.548587 CGCAGTAGCATGCACATATTTC 58.451 45.455 21.98 0.00 46.87 2.17
67 68 2.287188 GCGCAGTAGCATGCACATATTT 60.287 45.455 21.98 0.00 46.87 1.40
68 69 1.265095 GCGCAGTAGCATGCACATATT 59.735 47.619 21.98 0.00 46.87 1.28
69 70 0.870393 GCGCAGTAGCATGCACATAT 59.130 50.000 21.98 0.16 46.87 1.78
70 71 0.461693 TGCGCAGTAGCATGCACATA 60.462 50.000 21.98 0.00 46.87 2.29
71 72 1.746239 TGCGCAGTAGCATGCACAT 60.746 52.632 21.98 1.04 46.87 3.21
72 73 2.358492 TGCGCAGTAGCATGCACA 60.358 55.556 21.98 3.86 46.87 4.57
79 80 3.579709 ACTATATGACATGCGCAGTAGC 58.420 45.455 18.32 5.78 37.71 3.58
80 81 5.944013 AGTACTATATGACATGCGCAGTAG 58.056 41.667 18.32 11.14 0.00 2.57
81 82 5.106277 GGAGTACTATATGACATGCGCAGTA 60.106 44.000 18.32 6.23 0.00 2.74
82 83 4.321304 GGAGTACTATATGACATGCGCAGT 60.321 45.833 18.32 14.33 0.00 4.40
83 84 4.169508 GGAGTACTATATGACATGCGCAG 58.830 47.826 18.32 10.85 0.00 5.18
84 85 3.056821 GGGAGTACTATATGACATGCGCA 60.057 47.826 14.96 14.96 0.00 6.09
85 86 3.193691 AGGGAGTACTATATGACATGCGC 59.806 47.826 0.00 0.00 0.00 6.09
86 87 4.702612 AGAGGGAGTACTATATGACATGCG 59.297 45.833 0.00 0.00 0.00 4.73
87 88 5.712446 TCAGAGGGAGTACTATATGACATGC 59.288 44.000 0.00 0.00 0.00 4.06
88 89 7.068103 GGATCAGAGGGAGTACTATATGACATG 59.932 44.444 0.00 0.00 0.00 3.21
89 90 7.122715 GGATCAGAGGGAGTACTATATGACAT 58.877 42.308 0.00 0.00 0.00 3.06
90 91 6.045577 TGGATCAGAGGGAGTACTATATGACA 59.954 42.308 0.00 0.00 0.00 3.58
99 100 7.775561 ACATTTATTTTGGATCAGAGGGAGTAC 59.224 37.037 0.00 0.00 0.00 2.73
109 110 4.605183 ACCGGGACATTTATTTTGGATCA 58.395 39.130 6.32 0.00 0.00 2.92
112 113 6.572703 GCTTAAACCGGGACATTTATTTTGGA 60.573 38.462 6.32 0.00 0.00 3.53
116 117 4.773149 TGGCTTAAACCGGGACATTTATTT 59.227 37.500 6.32 0.00 0.00 1.40
119 120 3.436577 TGGCTTAAACCGGGACATTTA 57.563 42.857 6.32 0.00 0.00 1.40
122 123 1.283613 TCATGGCTTAAACCGGGACAT 59.716 47.619 6.32 0.00 0.00 3.06
125 126 0.693622 TGTCATGGCTTAAACCGGGA 59.306 50.000 6.32 0.00 0.00 5.14
127 128 1.821216 AGTGTCATGGCTTAAACCGG 58.179 50.000 0.00 0.00 0.00 5.28
136 137 3.578688 GATCCAAAACAAGTGTCATGGC 58.421 45.455 9.50 0.00 35.13 4.40
140 141 4.036262 CCTTTCGATCCAAAACAAGTGTCA 59.964 41.667 0.00 0.00 0.00 3.58
150 151 7.265673 CAAGATACTACTCCTTTCGATCCAAA 58.734 38.462 0.00 0.00 0.00 3.28
151 152 6.683110 GCAAGATACTACTCCTTTCGATCCAA 60.683 42.308 0.00 0.00 0.00 3.53
152 153 5.221263 GCAAGATACTACTCCTTTCGATCCA 60.221 44.000 0.00 0.00 0.00 3.41
153 154 5.224135 GCAAGATACTACTCCTTTCGATCC 58.776 45.833 0.00 0.00 0.00 3.36
154 155 4.912766 CGCAAGATACTACTCCTTTCGATC 59.087 45.833 0.00 0.00 43.02 3.69
155 156 4.579340 TCGCAAGATACTACTCCTTTCGAT 59.421 41.667 0.00 0.00 45.01 3.59
156 157 3.943381 TCGCAAGATACTACTCCTTTCGA 59.057 43.478 0.00 0.00 45.01 3.71
157 158 4.288670 TCGCAAGATACTACTCCTTTCG 57.711 45.455 0.00 0.00 45.01 3.46
182 183 0.535335 TAACTGATGGCTGACGGTCC 59.465 55.000 5.55 0.00 0.00 4.46
226 227 7.541122 AATACAAATCTTAGCTTCGACCTTC 57.459 36.000 0.00 0.00 0.00 3.46
227 228 9.099454 CTTAATACAAATCTTAGCTTCGACCTT 57.901 33.333 0.00 0.00 0.00 3.50
228 229 8.475639 TCTTAATACAAATCTTAGCTTCGACCT 58.524 33.333 0.00 0.00 0.00 3.85
229 230 8.644318 TCTTAATACAAATCTTAGCTTCGACC 57.356 34.615 0.00 0.00 0.00 4.79
266 267 3.726291 AAATATGGTGCCGGTTTATGC 57.274 42.857 1.90 0.00 0.00 3.14
308 309 3.243569 CGGTTAGGTCCATAGAGAGCTTG 60.244 52.174 0.00 0.00 41.75 4.01
309 310 2.959707 CGGTTAGGTCCATAGAGAGCTT 59.040 50.000 0.00 0.00 41.75 3.74
339 340 6.350528 CCTTGTTAGTGAGTGCTCTTGATCTA 60.351 42.308 0.00 0.00 0.00 1.98
354 356 4.454847 TCGTGTAGAGAGACCTTGTTAGTG 59.545 45.833 0.00 0.00 0.00 2.74
380 382 1.607251 GGTACTGTTTGGTCAGTCCCG 60.607 57.143 2.59 0.00 45.79 5.14
423 425 0.606401 ATCACTTGGACTTGGGTGCG 60.606 55.000 0.00 0.00 36.55 5.34
435 437 0.387622 CGCTGTTTGGCCATCACTTG 60.388 55.000 6.09 5.62 0.00 3.16
460 462 1.985159 ACAAGGTTAGATGCCAGGACA 59.015 47.619 0.00 0.00 0.00 4.02
473 475 8.092687 CCACACAGTACTAGTATAAACAAGGTT 58.907 37.037 5.75 0.00 0.00 3.50
474 476 7.609056 CCACACAGTACTAGTATAAACAAGGT 58.391 38.462 5.75 0.00 0.00 3.50
522 528 3.247411 TGCGCATACAAGATATTGGAACG 59.753 43.478 5.66 5.92 0.00 3.95
562 568 2.746277 AACGCGATGGAACTGCCC 60.746 61.111 15.93 0.00 34.97 5.36
584 590 0.934496 TTTCTGTTGTCGTGGCGAAG 59.066 50.000 0.00 0.00 37.72 3.79
585 591 1.329292 CTTTTCTGTTGTCGTGGCGAA 59.671 47.619 0.00 0.00 37.72 4.70
586 592 0.934496 CTTTTCTGTTGTCGTGGCGA 59.066 50.000 0.00 0.00 0.00 5.54
628 638 6.920817 TCCTATAAATATACTCGGTGTGCAG 58.079 40.000 0.00 0.00 0.00 4.41
662 673 4.106502 TGGCTGTGGAGTATAGACTAGGAT 59.893 45.833 0.00 0.00 35.45 3.24
678 689 0.035317 TACTGAGTTGGCTGGCTGTG 59.965 55.000 2.00 0.00 0.00 3.66
680 691 1.160137 GTTACTGAGTTGGCTGGCTG 58.840 55.000 2.00 0.00 0.00 4.85
705 716 6.402983 GGAGTCTGAACATCTTGCATTGTTAG 60.403 42.308 9.39 8.13 36.25 2.34
711 722 3.341823 GTGGAGTCTGAACATCTTGCAT 58.658 45.455 0.00 0.00 0.00 3.96
712 723 2.771089 GTGGAGTCTGAACATCTTGCA 58.229 47.619 0.00 0.00 0.00 4.08
734 745 4.937015 TCTTGGCGGTTGTATAGGTTAAAC 59.063 41.667 0.00 0.00 0.00 2.01
743 754 2.224784 GTCGTTTTCTTGGCGGTTGTAT 59.775 45.455 0.00 0.00 0.00 2.29
745 756 0.379316 GTCGTTTTCTTGGCGGTTGT 59.621 50.000 0.00 0.00 0.00 3.32
764 775 0.933097 CAATTCACCATCGAGAGGCG 59.067 55.000 6.60 0.00 42.69 5.52
808 831 0.975887 TGGGAGAATTTTGCCAAGGC 59.024 50.000 6.76 3.61 35.45 4.35
809 832 1.066645 GCTGGGAGAATTTTGCCAAGG 60.067 52.381 10.50 1.49 38.16 3.61
810 833 1.619827 TGCTGGGAGAATTTTGCCAAG 59.380 47.619 10.50 6.23 38.16 3.61
813 836 2.837532 TTTGCTGGGAGAATTTTGCC 57.162 45.000 0.00 0.00 0.00 4.52
814 837 3.992427 CTCTTTTGCTGGGAGAATTTTGC 59.008 43.478 0.00 0.00 0.00 3.68
816 839 4.482990 TCCTCTTTTGCTGGGAGAATTTT 58.517 39.130 0.00 0.00 0.00 1.82
817 840 4.118168 TCCTCTTTTGCTGGGAGAATTT 57.882 40.909 0.00 0.00 0.00 1.82
818 841 3.814504 TCCTCTTTTGCTGGGAGAATT 57.185 42.857 0.00 0.00 0.00 2.17
819 842 3.694926 CTTCCTCTTTTGCTGGGAGAAT 58.305 45.455 0.00 0.00 0.00 2.40
820 843 2.815589 GCTTCCTCTTTTGCTGGGAGAA 60.816 50.000 0.00 0.00 0.00 2.87
821 844 1.271597 GCTTCCTCTTTTGCTGGGAGA 60.272 52.381 0.00 0.00 0.00 3.71
822 845 1.172175 GCTTCCTCTTTTGCTGGGAG 58.828 55.000 0.00 0.00 0.00 4.30
823 846 0.606401 CGCTTCCTCTTTTGCTGGGA 60.606 55.000 0.00 0.00 0.00 4.37
824 847 1.878775 CGCTTCCTCTTTTGCTGGG 59.121 57.895 0.00 0.00 0.00 4.45
825 848 1.211190 GCGCTTCCTCTTTTGCTGG 59.789 57.895 0.00 0.00 0.00 4.85
826 849 1.154338 CGCGCTTCCTCTTTTGCTG 60.154 57.895 5.56 0.00 0.00 4.41
827 850 2.328099 CCGCGCTTCCTCTTTTGCT 61.328 57.895 5.56 0.00 0.00 3.91
828 851 2.176792 CCGCGCTTCCTCTTTTGC 59.823 61.111 5.56 0.00 0.00 3.68
829 852 2.176792 GCCGCGCTTCCTCTTTTG 59.823 61.111 5.56 0.00 0.00 2.44
830 853 3.423154 CGCCGCGCTTCCTCTTTT 61.423 61.111 5.56 0.00 0.00 2.27
831 854 4.373116 TCGCCGCGCTTCCTCTTT 62.373 61.111 8.21 0.00 0.00 2.52
858 881 4.651008 TTCCCGTGCGGTGTCGAC 62.651 66.667 9.11 9.11 39.00 4.20
880 903 4.895224 AGTTTCTCCTTGTTTCGGAAAC 57.105 40.909 23.27 23.27 43.18 2.78
881 904 5.008316 GCTTAGTTTCTCCTTGTTTCGGAAA 59.992 40.000 0.00 0.00 0.00 3.13
947 975 0.241481 TTCGGTTGCGGTAATTTGCC 59.759 50.000 0.00 0.00 0.00 4.52
1000 1032 4.575885 TGCGCTTTGATATTACCTATCCC 58.424 43.478 9.73 0.00 36.20 3.85
1034 1074 2.193248 CCCTTTCGGAGCCCCATC 59.807 66.667 0.00 0.00 0.00 3.51
1127 1181 1.376553 GAGGAAAAGGCTGCGAGCT 60.377 57.895 7.85 0.00 41.99 4.09
1167 1221 1.747367 CTCTCTCACTCTCCGGCGT 60.747 63.158 6.01 0.00 0.00 5.68
1196 1252 4.146564 TGCTACGGAGGTTGCTATGTATA 58.853 43.478 0.00 0.00 43.88 1.47
1210 1276 2.679996 TCCTGCTGCTGCTACGGA 60.680 61.111 17.00 15.46 40.48 4.69
1211 1277 2.202851 CTCCTGCTGCTGCTACGG 60.203 66.667 17.00 13.57 40.48 4.02
1212 1278 2.889503 GCTCCTGCTGCTGCTACG 60.890 66.667 17.00 5.29 40.48 3.51
1213 1279 2.105466 GTGCTCCTGCTGCTGCTAC 61.105 63.158 17.00 2.56 40.48 3.58
1226 1299 0.108898 ACTCGCAGATCACAGTGCTC 60.109 55.000 0.00 0.00 37.55 4.26
1773 1865 2.885644 GGTCGCGATCGCATGTGT 60.886 61.111 36.45 0.00 42.06 3.72
1774 1866 3.976375 CGGTCGCGATCGCATGTG 61.976 66.667 36.45 21.79 42.06 3.21
1775 1867 2.983761 CTACGGTCGCGATCGCATGT 62.984 60.000 38.99 28.04 38.78 3.21
1780 1872 1.456923 TGTATACTACGGTCGCGATCG 59.543 52.381 37.67 37.67 41.46 3.69
1782 1874 1.532868 GGTGTATACTACGGTCGCGAT 59.467 52.381 14.06 0.00 0.00 4.58
1789 1881 2.564771 TCGTCCTGGTGTATACTACGG 58.435 52.381 4.17 2.19 0.00 4.02
1802 1899 5.755375 GGTTATGGCATATATCATCGTCCTG 59.245 44.000 8.24 0.00 0.00 3.86
1823 1920 5.456186 CCCGGTAATTAATCTCCTCATGGTT 60.456 44.000 0.00 0.00 34.23 3.67
1897 1998 2.818432 CTGAAGCAGGAGTGAGCAATTT 59.182 45.455 0.00 0.00 0.00 1.82
1923 2024 6.909357 CGAAGTTAACTTATACGGAGTAGTGG 59.091 42.308 20.58 0.00 40.91 4.00
2071 2181 3.357079 GAGTTGGCTGCCGGTGTG 61.357 66.667 14.98 0.00 0.00 3.82
2106 2216 1.811266 CTGTTGACCGGATGGAGCG 60.811 63.158 9.46 0.00 39.21 5.03
2144 2276 4.431809 CGCAACATCTTCTGAATCTCTCT 58.568 43.478 0.00 0.00 0.00 3.10
2183 2315 1.361668 CCGCCATCTTGTCCTGAACG 61.362 60.000 0.00 0.00 0.00 3.95
2227 2359 0.698238 TGCTGATGCCCCTAACAACT 59.302 50.000 0.00 0.00 38.71 3.16
2316 2454 4.777463 GGTAAGGCCTAAACTCTTATGCA 58.223 43.478 5.16 0.00 32.10 3.96
2357 2495 0.324943 TCTTGGTTCAGGCAGGCTAC 59.675 55.000 0.00 0.00 0.00 3.58
2374 2512 5.940470 GTCCTTTATCCTGTGTTGTGATTCT 59.060 40.000 0.00 0.00 0.00 2.40
2378 2516 4.346709 TCAGTCCTTTATCCTGTGTTGTGA 59.653 41.667 0.00 0.00 0.00 3.58
2381 2519 5.048713 GGTTTCAGTCCTTTATCCTGTGTTG 60.049 44.000 0.00 0.00 0.00 3.33
2389 2527 6.808704 GCATTTCAAGGTTTCAGTCCTTTATC 59.191 38.462 0.00 0.00 42.57 1.75
2399 2537 5.049167 GTGTTGATGCATTTCAAGGTTTCA 58.951 37.500 0.00 0.00 36.34 2.69
2400 2538 5.049167 TGTGTTGATGCATTTCAAGGTTTC 58.951 37.500 0.00 0.00 36.34 2.78
2418 2556 0.179004 TGCCGTCCTTCCATTGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
2424 2562 1.247567 CAAACTTGCCGTCCTTCCAT 58.752 50.000 0.00 0.00 0.00 3.41
2447 2585 1.679977 CCTGTTCAGGGTGGCATGG 60.680 63.158 10.71 0.00 0.00 3.66
2469 2607 6.273071 GTTCAGAAATACTGCCAGTTTTTGT 58.727 36.000 16.39 10.62 45.38 2.83
2481 2619 3.581332 TCCGTTCCTGGTTCAGAAATACT 59.419 43.478 0.00 0.00 32.44 2.12
2482 2620 3.934068 TCCGTTCCTGGTTCAGAAATAC 58.066 45.455 0.00 0.00 32.44 1.89
2483 2621 4.627284 TTCCGTTCCTGGTTCAGAAATA 57.373 40.909 0.00 0.00 32.44 1.40
2501 2639 3.893326 ACAGCTTATGGCCAATTTTCC 57.107 42.857 10.96 0.00 43.05 3.13
2502 2640 4.183865 GGAACAGCTTATGGCCAATTTTC 58.816 43.478 10.96 5.81 43.05 2.29
2529 2667 2.171940 GCGTCTGCTGCAAGTTCG 59.828 61.111 3.02 7.35 38.39 3.95
2530 2668 2.171940 CGCGTCTGCTGCAAGTTC 59.828 61.111 3.02 0.00 39.65 3.01
2531 2669 2.588877 ACGCGTCTGCTGCAAGTT 60.589 55.556 5.58 0.00 39.65 2.66
2533 2671 1.556591 TAACACGCGTCTGCTGCAAG 61.557 55.000 9.86 0.00 39.65 4.01
2534 2672 1.556591 CTAACACGCGTCTGCTGCAA 61.557 55.000 9.86 0.00 39.65 4.08
2535 2673 2.021584 CTAACACGCGTCTGCTGCA 61.022 57.895 9.86 0.88 39.65 4.41
2536 2674 2.772189 CTAACACGCGTCTGCTGC 59.228 61.111 9.86 0.00 39.65 5.25
2537 2675 2.730672 GGCTAACACGCGTCTGCTG 61.731 63.158 9.86 0.00 39.65 4.41
2538 2676 2.432628 GGCTAACACGCGTCTGCT 60.433 61.111 9.86 0.00 39.65 4.24
2539 2677 3.838795 CGGCTAACACGCGTCTGC 61.839 66.667 9.86 11.30 37.91 4.26
2540 2678 2.430244 ACGGCTAACACGCGTCTG 60.430 61.111 9.86 5.30 34.00 3.51
2541 2679 2.430244 CACGGCTAACACGCGTCT 60.430 61.111 9.86 1.22 34.00 4.18
2542 2680 2.206825 GAACACGGCTAACACGCGTC 62.207 60.000 9.86 0.00 34.00 5.19
2543 2681 2.279650 AACACGGCTAACACGCGT 60.280 55.556 5.58 5.58 34.00 6.01
2544 2682 2.210524 CTGAACACGGCTAACACGCG 62.211 60.000 3.53 3.53 34.00 6.01
2545 2683 1.491563 CTGAACACGGCTAACACGC 59.508 57.895 0.00 0.00 34.00 5.34
2546 2684 1.218875 TGCTGAACACGGCTAACACG 61.219 55.000 0.00 0.00 36.91 4.49
2547 2685 0.512952 CTGCTGAACACGGCTAACAC 59.487 55.000 0.00 0.00 36.91 3.32
2548 2686 0.391228 TCTGCTGAACACGGCTAACA 59.609 50.000 0.00 0.00 36.91 2.41
2549 2687 1.071605 CTCTGCTGAACACGGCTAAC 58.928 55.000 0.00 0.00 36.91 2.34
2550 2688 0.966179 TCTCTGCTGAACACGGCTAA 59.034 50.000 0.00 0.00 36.91 3.09
2551 2689 0.243907 GTCTCTGCTGAACACGGCTA 59.756 55.000 0.00 0.00 36.91 3.93
2552 2690 1.005630 GTCTCTGCTGAACACGGCT 60.006 57.895 0.00 0.00 36.91 5.52
2553 2691 2.029844 GGTCTCTGCTGAACACGGC 61.030 63.158 0.00 0.00 36.56 5.68
2554 2692 0.946221 GTGGTCTCTGCTGAACACGG 60.946 60.000 7.20 0.00 43.48 4.94
2555 2693 2.522060 GTGGTCTCTGCTGAACACG 58.478 57.895 7.20 0.00 43.48 4.49
2557 2695 1.112916 TCCGTGGTCTCTGCTGAACA 61.113 55.000 0.00 0.00 0.00 3.18
2558 2696 0.247736 ATCCGTGGTCTCTGCTGAAC 59.752 55.000 0.00 0.00 0.00 3.18
2559 2697 0.532573 GATCCGTGGTCTCTGCTGAA 59.467 55.000 0.00 0.00 0.00 3.02
2560 2698 1.657751 CGATCCGTGGTCTCTGCTGA 61.658 60.000 0.00 0.00 0.00 4.26
2561 2699 1.226802 CGATCCGTGGTCTCTGCTG 60.227 63.158 0.00 0.00 0.00 4.41
2562 2700 3.069980 GCGATCCGTGGTCTCTGCT 62.070 63.158 0.00 0.00 0.00 4.24
2563 2701 2.583593 GCGATCCGTGGTCTCTGC 60.584 66.667 0.00 0.00 0.00 4.26
2564 2702 0.803768 CTTGCGATCCGTGGTCTCTG 60.804 60.000 0.00 0.00 0.00 3.35
2565 2703 1.513158 CTTGCGATCCGTGGTCTCT 59.487 57.895 0.00 0.00 0.00 3.10
2566 2704 1.519455 CCTTGCGATCCGTGGTCTC 60.519 63.158 0.00 0.00 0.00 3.36
2567 2705 2.579201 CCTTGCGATCCGTGGTCT 59.421 61.111 0.00 0.00 0.00 3.85
2568 2706 3.195698 GCCTTGCGATCCGTGGTC 61.196 66.667 0.00 0.00 0.00 4.02
2579 2717 2.278026 ATTTTCCGAAATCGCCTTGC 57.722 45.000 0.00 0.00 38.18 4.01
2580 2718 4.211389 CGATATTTTCCGAAATCGCCTTG 58.789 43.478 3.19 0.00 36.82 3.61
2581 2719 3.875134 ACGATATTTTCCGAAATCGCCTT 59.125 39.130 12.92 0.00 36.82 4.35
2582 2720 3.463944 ACGATATTTTCCGAAATCGCCT 58.536 40.909 12.92 0.00 36.82 5.52
2583 2721 3.246699 TGACGATATTTTCCGAAATCGCC 59.753 43.478 12.92 5.38 36.82 5.54
2584 2722 4.446234 CTGACGATATTTTCCGAAATCGC 58.554 43.478 12.92 8.22 36.82 4.58
2585 2723 4.446234 GCTGACGATATTTTCCGAAATCG 58.554 43.478 11.86 11.86 36.82 3.34
2586 2724 4.319549 GGGCTGACGATATTTTCCGAAATC 60.320 45.833 0.00 0.00 36.82 2.17
2587 2725 3.564225 GGGCTGACGATATTTTCCGAAAT 59.436 43.478 0.00 0.00 38.88 2.17
2588 2726 2.940410 GGGCTGACGATATTTTCCGAAA 59.060 45.455 0.00 0.00 0.00 3.46
2589 2727 2.093394 TGGGCTGACGATATTTTCCGAA 60.093 45.455 0.00 0.00 0.00 4.30
2590 2728 1.483004 TGGGCTGACGATATTTTCCGA 59.517 47.619 0.00 0.00 0.00 4.55
2591 2729 1.948104 TGGGCTGACGATATTTTCCG 58.052 50.000 0.00 0.00 0.00 4.30
2592 2730 5.106157 CCATATTGGGCTGACGATATTTTCC 60.106 44.000 0.00 0.00 32.67 3.13
2593 2731 5.942872 CCATATTGGGCTGACGATATTTTC 58.057 41.667 0.00 0.00 32.67 2.29
2594 2732 5.964958 CCATATTGGGCTGACGATATTTT 57.035 39.130 0.00 0.00 32.67 1.82
2607 2745 1.174712 CCGAAGCTGGCCATATTGGG 61.175 60.000 5.51 11.34 38.19 4.12
2608 2746 0.179020 TCCGAAGCTGGCCATATTGG 60.179 55.000 5.51 9.24 41.55 3.16
2609 2747 1.901591 ATCCGAAGCTGGCCATATTG 58.098 50.000 5.51 0.00 0.00 1.90
2610 2748 2.664402 AATCCGAAGCTGGCCATATT 57.336 45.000 5.51 3.58 0.00 1.28
2611 2749 2.664402 AAATCCGAAGCTGGCCATAT 57.336 45.000 5.51 0.00 0.00 1.78
2612 2750 2.435372 AAAATCCGAAGCTGGCCATA 57.565 45.000 5.51 0.00 0.00 2.74
2613 2751 2.301346 CTAAAATCCGAAGCTGGCCAT 58.699 47.619 5.51 0.00 0.00 4.40
2614 2752 1.750193 CTAAAATCCGAAGCTGGCCA 58.250 50.000 4.71 4.71 0.00 5.36
2615 2753 0.382158 GCTAAAATCCGAAGCTGGCC 59.618 55.000 0.00 0.00 33.40 5.36
2616 2754 1.332065 GAGCTAAAATCCGAAGCTGGC 59.668 52.381 0.00 0.00 46.29 4.85
2617 2755 2.632377 TGAGCTAAAATCCGAAGCTGG 58.368 47.619 0.00 0.00 46.29 4.85
2618 2756 3.935203 TCTTGAGCTAAAATCCGAAGCTG 59.065 43.478 0.00 0.00 46.29 4.24
2620 2758 4.184629 TCTCTTGAGCTAAAATCCGAAGC 58.815 43.478 0.00 0.00 36.48 3.86
2621 2759 5.639506 TGTTCTCTTGAGCTAAAATCCGAAG 59.360 40.000 0.00 0.00 0.00 3.79
2622 2760 5.547465 TGTTCTCTTGAGCTAAAATCCGAA 58.453 37.500 0.00 0.00 0.00 4.30
2623 2761 5.147330 TGTTCTCTTGAGCTAAAATCCGA 57.853 39.130 0.00 0.00 0.00 4.55
2624 2762 5.639506 TCTTGTTCTCTTGAGCTAAAATCCG 59.360 40.000 0.00 0.00 0.00 4.18
2625 2763 6.652900 AGTCTTGTTCTCTTGAGCTAAAATCC 59.347 38.462 0.00 0.00 0.00 3.01
2626 2764 7.360776 CCAGTCTTGTTCTCTTGAGCTAAAATC 60.361 40.741 0.00 0.00 0.00 2.17
2627 2765 6.429385 CCAGTCTTGTTCTCTTGAGCTAAAAT 59.571 38.462 0.00 0.00 0.00 1.82
2628 2766 5.760253 CCAGTCTTGTTCTCTTGAGCTAAAA 59.240 40.000 0.00 0.00 0.00 1.52
2629 2767 5.300752 CCAGTCTTGTTCTCTTGAGCTAAA 58.699 41.667 0.00 0.00 0.00 1.85
2630 2768 4.262635 CCCAGTCTTGTTCTCTTGAGCTAA 60.263 45.833 0.00 0.00 0.00 3.09
2631 2769 3.259374 CCCAGTCTTGTTCTCTTGAGCTA 59.741 47.826 0.00 0.00 0.00 3.32
2632 2770 2.038295 CCCAGTCTTGTTCTCTTGAGCT 59.962 50.000 0.00 0.00 0.00 4.09
2633 2771 2.037772 TCCCAGTCTTGTTCTCTTGAGC 59.962 50.000 0.00 0.00 0.00 4.26
2634 2772 4.061596 GTTCCCAGTCTTGTTCTCTTGAG 58.938 47.826 0.00 0.00 0.00 3.02
2635 2773 3.454447 TGTTCCCAGTCTTGTTCTCTTGA 59.546 43.478 0.00 0.00 0.00 3.02
2636 2774 3.808728 TGTTCCCAGTCTTGTTCTCTTG 58.191 45.455 0.00 0.00 0.00 3.02
2637 2775 4.164221 TCTTGTTCCCAGTCTTGTTCTCTT 59.836 41.667 0.00 0.00 0.00 2.85
2638 2776 3.711704 TCTTGTTCCCAGTCTTGTTCTCT 59.288 43.478 0.00 0.00 0.00 3.10
2639 2777 4.061596 CTCTTGTTCCCAGTCTTGTTCTC 58.938 47.826 0.00 0.00 0.00 2.87
2640 2778 3.745797 GCTCTTGTTCCCAGTCTTGTTCT 60.746 47.826 0.00 0.00 0.00 3.01
2641 2779 2.550180 GCTCTTGTTCCCAGTCTTGTTC 59.450 50.000 0.00 0.00 0.00 3.18
2642 2780 2.092429 TGCTCTTGTTCCCAGTCTTGTT 60.092 45.455 0.00 0.00 0.00 2.83
2643 2781 1.490490 TGCTCTTGTTCCCAGTCTTGT 59.510 47.619 0.00 0.00 0.00 3.16
2644 2782 2.260844 TGCTCTTGTTCCCAGTCTTG 57.739 50.000 0.00 0.00 0.00 3.02
2645 2783 2.173569 ACTTGCTCTTGTTCCCAGTCTT 59.826 45.455 0.00 0.00 0.00 3.01
2646 2784 1.771255 ACTTGCTCTTGTTCCCAGTCT 59.229 47.619 0.00 0.00 0.00 3.24
2647 2785 1.876156 CACTTGCTCTTGTTCCCAGTC 59.124 52.381 0.00 0.00 0.00 3.51
2648 2786 1.972872 CACTTGCTCTTGTTCCCAGT 58.027 50.000 0.00 0.00 0.00 4.00
2649 2787 0.595095 GCACTTGCTCTTGTTCCCAG 59.405 55.000 0.00 0.00 38.21 4.45
2650 2788 0.106769 TGCACTTGCTCTTGTTCCCA 60.107 50.000 2.33 0.00 42.66 4.37
2651 2789 0.595095 CTGCACTTGCTCTTGTTCCC 59.405 55.000 2.33 0.00 42.66 3.97
2652 2790 1.312815 ACTGCACTTGCTCTTGTTCC 58.687 50.000 2.33 0.00 42.66 3.62
2674 2812 9.632969 CGGTTATCGAATTGTTTCTAATAAGTG 57.367 33.333 0.00 0.00 42.43 3.16
2680 2818 8.605746 CATAACCGGTTATCGAATTGTTTCTAA 58.394 33.333 32.34 6.90 42.43 2.10
2681 2819 7.225145 CCATAACCGGTTATCGAATTGTTTCTA 59.775 37.037 32.34 7.29 42.43 2.10
2682 2820 6.037830 CCATAACCGGTTATCGAATTGTTTCT 59.962 38.462 32.34 9.41 42.43 2.52
2700 2838 6.827586 TGTCCAATTCTTGTTACCATAACC 57.172 37.500 0.00 0.00 0.00 2.85
2708 2846 5.441500 TGACTGGTTGTCCAATTCTTGTTA 58.558 37.500 0.00 0.00 44.75 2.41
2714 2852 3.383185 TGGTTTGACTGGTTGTCCAATTC 59.617 43.478 0.00 0.00 44.75 2.17
2720 2858 2.582052 TCCATGGTTTGACTGGTTGTC 58.418 47.619 12.58 0.00 45.54 3.18
2730 2868 5.111293 GCACTCCATAATTTCCATGGTTTG 58.889 41.667 12.58 0.00 43.03 2.93
2734 2872 2.294233 CGGCACTCCATAATTTCCATGG 59.706 50.000 4.97 4.97 43.74 3.66
2744 2882 2.661718 TGATGTAGACGGCACTCCATA 58.338 47.619 0.00 0.00 0.00 2.74
2780 2918 5.286082 GTGAACCATCGGATTTTTCAATTCG 59.714 40.000 10.97 0.00 42.14 3.34
2793 2931 1.739466 CCAATCACAGTGAACCATCGG 59.261 52.381 7.50 0.00 0.00 4.18
2794 2932 2.416547 GACCAATCACAGTGAACCATCG 59.583 50.000 7.50 0.00 0.00 3.84
2799 2937 2.851195 ACCTGACCAATCACAGTGAAC 58.149 47.619 7.50 0.00 32.93 3.18
2825 2963 5.009710 GTCTTAAGTGGAAAACTGAAAGGGG 59.990 44.000 1.63 0.00 39.81 4.79
2826 2964 5.277828 CGTCTTAAGTGGAAAACTGAAAGGG 60.278 44.000 1.63 0.00 39.81 3.95
2836 2974 3.188159 AGTGTGCGTCTTAAGTGGAAA 57.812 42.857 1.63 0.00 0.00 3.13
2858 2996 1.301401 GGCTACTGTGCGGTGTTCA 60.301 57.895 0.00 0.00 0.00 3.18
2871 3009 4.261363 GCCATGCTATTTTCTTCAGGCTAC 60.261 45.833 0.00 0.00 36.72 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.