Multiple sequence alignment - TraesCS7A01G390800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G390800 chr7A 100.000 3658 0 0 1 3658 566909408 566913065 0.000000e+00 6756.0
1 TraesCS7A01G390800 chr7A 88.207 2103 173 39 741 2827 566989431 566991474 0.000000e+00 2440.0
2 TraesCS7A01G390800 chr7A 87.488 2062 177 27 1347 3358 566790817 566792847 0.000000e+00 2303.0
3 TraesCS7A01G390800 chr7A 87.891 1214 124 9 1372 2572 619305199 619306402 0.000000e+00 1406.0
4 TraesCS7A01G390800 chr7A 94.801 327 14 1 991 1317 566790499 566790822 1.170000e-139 507.0
5 TraesCS7A01G390800 chr7A 78.505 535 45 37 423 919 566789980 566790482 1.660000e-73 287.0
6 TraesCS7A01G390800 chr7A 91.282 195 15 1 42 234 566789300 566789494 7.790000e-67 265.0
7 TraesCS7A01G390800 chr7A 85.547 256 20 10 2517 2762 619306402 619306650 6.060000e-63 252.0
8 TraesCS7A01G390800 chr7A 84.082 245 23 7 430 662 566989086 566989326 4.750000e-54 222.0
9 TraesCS7A01G390800 chr7A 86.224 196 23 3 42 234 603552199 603552005 3.700000e-50 209.0
10 TraesCS7A01G390800 chr7A 89.831 118 9 2 247 363 566789726 566789841 8.180000e-32 148.0
11 TraesCS7A01G390800 chr7A 83.448 145 20 2 3070 3214 566789490 566789630 8.240000e-27 132.0
12 TraesCS7A01G390800 chrUn 84.409 2540 245 72 327 2827 86611511 86613938 0.000000e+00 2357.0
13 TraesCS7A01G390800 chr7D 84.475 2512 224 82 423 2863 500775636 500778052 0.000000e+00 2326.0
14 TraesCS7A01G390800 chr7D 87.782 1596 133 23 991 2572 113583065 113584612 0.000000e+00 1810.0
15 TraesCS7A01G390800 chr7D 88.048 251 20 5 2517 2762 113584612 113584857 4.620000e-74 289.0
16 TraesCS7A01G390800 chr7D 90.769 195 16 1 42 234 113582597 113582791 3.620000e-65 259.0
17 TraesCS7A01G390800 chr7D 86.154 195 23 3 42 233 523055963 523055770 1.330000e-49 207.0
18 TraesCS7A01G390800 chr7D 89.873 158 9 2 769 919 113582891 113583048 2.880000e-46 196.0
19 TraesCS7A01G390800 chr7D 82.759 145 21 2 3070 3214 500774994 500775134 3.830000e-25 126.0
20 TraesCS7A01G390800 chr7B 84.296 2477 251 68 423 2852 528873325 528875710 0.000000e+00 2292.0
21 TraesCS7A01G390800 chr7B 89.874 1669 131 17 956 2616 664398895 664397257 0.000000e+00 2111.0
22 TraesCS7A01G390800 chr7B 88.898 1207 112 9 1379 2572 73176988 73178185 0.000000e+00 1467.0
23 TraesCS7A01G390800 chr7B 88.694 1026 94 10 1597 2612 528876732 528877745 0.000000e+00 1232.0
24 TraesCS7A01G390800 chr7B 87.565 772 81 8 2142 2907 73139871 73140633 0.000000e+00 880.0
25 TraesCS7A01G390800 chr7B 84.034 357 30 12 322 662 664399547 664399202 5.890000e-83 318.0
26 TraesCS7A01G390800 chr7B 78.777 556 35 38 423 919 73175908 73176439 2.760000e-76 296.0
27 TraesCS7A01G390800 chr7B 91.795 195 14 1 42 234 528872699 528872893 1.670000e-68 270.0
28 TraesCS7A01G390800 chr7B 87.383 214 14 4 30 234 73175213 73175422 2.200000e-57 233.0
29 TraesCS7A01G390800 chr7B 87.755 196 20 3 42 234 557490546 557490352 3.680000e-55 226.0
30 TraesCS7A01G390800 chr7B 85.641 195 26 1 42 234 557256375 557256181 1.720000e-48 204.0
31 TraesCS7A01G390800 chr7B 84.615 143 16 4 3070 3211 528872889 528873026 1.770000e-28 137.0
32 TraesCS7A01G390800 chr7B 81.081 148 21 4 3070 3214 73175418 73175561 1.070000e-20 111.0
33 TraesCS7A01G390800 chr3A 87.067 2080 183 47 568 2612 732404961 732402933 0.000000e+00 2272.0
34 TraesCS7A01G390800 chr3A 96.990 299 9 0 3360 3658 647154030 647154328 1.520000e-138 503.0
35 TraesCS7A01G390800 chr3A 96.644 298 10 0 3361 3658 22234884 22234587 2.540000e-136 496.0
36 TraesCS7A01G390800 chr3A 95.960 297 12 0 3362 3658 9865822 9865526 1.980000e-132 483.0
37 TraesCS7A01G390800 chr3A 85.240 271 32 6 3095 3358 728985681 728985412 4.650000e-69 272.0
38 TraesCS7A01G390800 chr3A 100.000 29 0 0 789 817 728925310 728925282 2.000000e-03 54.7
39 TraesCS7A01G390800 chr3B 88.713 1639 155 18 986 2612 810194230 810192610 0.000000e+00 1975.0
40 TraesCS7A01G390800 chr3B 80.612 490 47 26 495 960 810195294 810194829 5.850000e-88 335.0
41 TraesCS7A01G390800 chr3B 86.957 299 33 3 3066 3358 806037918 806037620 7.570000e-87 331.0
42 TraesCS7A01G390800 chr3B 85.517 290 36 3 3075 3358 806049234 806048945 7.680000e-77 298.0
43 TraesCS7A01G390800 chr3B 87.387 222 24 1 3094 3315 806064575 806064358 6.060000e-63 252.0
44 TraesCS7A01G390800 chr3B 89.744 78 8 0 741 818 806058783 806058706 2.320000e-17 100.0
45 TraesCS7A01G390800 chr3B 100.000 30 0 0 789 818 806058810 806058781 5.100000e-04 56.5
46 TraesCS7A01G390800 chr3D 82.606 1788 178 75 430 2159 598726670 598724958 0.000000e+00 1456.0
47 TraesCS7A01G390800 chr3D 87.179 195 20 3 42 234 603683400 603683591 2.210000e-52 217.0
48 TraesCS7A01G390800 chr3D 81.609 174 21 7 3070 3243 603683587 603683749 2.290000e-27 134.0
49 TraesCS7A01G390800 chr1A 97.315 298 8 0 3361 3658 569442163 569441866 1.170000e-139 507.0
50 TraesCS7A01G390800 chr4A 96.700 303 10 0 3356 3658 624641541 624641843 4.220000e-139 505.0
51 TraesCS7A01G390800 chr4A 95.973 298 12 0 3361 3658 467282607 467282310 5.490000e-133 484.0
52 TraesCS7A01G390800 chr1D 95.932 295 12 0 3362 3656 473040619 473040913 2.560000e-131 479.0
53 TraesCS7A01G390800 chr4D 95.918 294 11 1 3363 3656 304737071 304736779 3.310000e-130 475.0
54 TraesCS7A01G390800 chr1B 95.270 296 14 0 3360 3655 38037324 38037619 1.540000e-128 470.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G390800 chr7A 566909408 566913065 3657 False 6756.00 6756 100.000000 1 3658 1 chr7A.!!$F1 3657
1 TraesCS7A01G390800 chr7A 566989086 566991474 2388 False 1331.00 2440 86.144500 430 2827 2 chr7A.!!$F3 2397
2 TraesCS7A01G390800 chr7A 619305199 619306650 1451 False 829.00 1406 86.719000 1372 2762 2 chr7A.!!$F4 1390
3 TraesCS7A01G390800 chr7A 566789300 566792847 3547 False 607.00 2303 87.559167 42 3358 6 chr7A.!!$F2 3316
4 TraesCS7A01G390800 chrUn 86611511 86613938 2427 False 2357.00 2357 84.409000 327 2827 1 chrUn.!!$F1 2500
5 TraesCS7A01G390800 chr7D 500774994 500778052 3058 False 1226.00 2326 83.617000 423 3214 2 chr7D.!!$F2 2791
6 TraesCS7A01G390800 chr7D 113582597 113584857 2260 False 638.50 1810 89.118000 42 2762 4 chr7D.!!$F1 2720
7 TraesCS7A01G390800 chr7B 664397257 664399547 2290 True 1214.50 2111 86.954000 322 2616 2 chr7B.!!$R3 2294
8 TraesCS7A01G390800 chr7B 528872699 528877745 5046 False 982.75 2292 87.350000 42 3211 4 chr7B.!!$F3 3169
9 TraesCS7A01G390800 chr7B 73139871 73140633 762 False 880.00 880 87.565000 2142 2907 1 chr7B.!!$F1 765
10 TraesCS7A01G390800 chr7B 73175213 73178185 2972 False 526.75 1467 84.034750 30 3214 4 chr7B.!!$F2 3184
11 TraesCS7A01G390800 chr3A 732402933 732404961 2028 True 2272.00 2272 87.067000 568 2612 1 chr3A.!!$R5 2044
12 TraesCS7A01G390800 chr3B 810192610 810195294 2684 True 1155.00 1975 84.662500 495 2612 2 chr3B.!!$R5 2117
13 TraesCS7A01G390800 chr3D 598724958 598726670 1712 True 1456.00 1456 82.606000 430 2159 1 chr3D.!!$R1 1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.030773 GAGAGCGTGCGGATGATGTA 59.969 55.0 0.0 0.0 0.00 2.29 F
470 953 0.240145 GCCCCTTTGCAACGTTACTC 59.760 55.0 0.0 0.0 0.00 2.59 F
883 1583 0.721718 GTACCAGCATCGCAGACAAC 59.278 55.0 0.0 0.0 42.51 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1033 2328 0.682855 AGAACGAGCAGGAGGAGGAG 60.683 60.0 0.00 0.0 0.00 3.69 R
1553 3055 0.904865 AAGGATGGAGACCTCGTGCA 60.905 55.0 0.00 0.0 36.67 4.57 R
2789 4410 0.175760 GACAAGGCGCCTGTCATCTA 59.824 55.0 34.55 0.0 33.20 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.074854 CCTCCCCCTTCTTCCTCC 57.925 66.667 0.00 0.00 0.00 4.30
18 19 2.066999 CCTCCCCCTTCTTCCTCCG 61.067 68.421 0.00 0.00 0.00 4.63
19 20 2.687566 TCCCCCTTCTTCCTCCGC 60.688 66.667 0.00 0.00 0.00 5.54
20 21 3.798511 CCCCCTTCTTCCTCCGCC 61.799 72.222 0.00 0.00 0.00 6.13
21 22 3.009115 CCCCTTCTTCCTCCGCCA 61.009 66.667 0.00 0.00 0.00 5.69
22 23 2.269241 CCCTTCTTCCTCCGCCAC 59.731 66.667 0.00 0.00 0.00 5.01
23 24 2.125512 CCTTCTTCCTCCGCCACG 60.126 66.667 0.00 0.00 0.00 4.94
33 34 2.202878 CCGCCACGGTACAGATGG 60.203 66.667 0.00 5.26 42.73 3.51
34 35 2.717044 CCGCCACGGTACAGATGGA 61.717 63.158 15.13 0.00 42.73 3.41
35 36 1.216977 CGCCACGGTACAGATGGAA 59.783 57.895 15.13 0.00 35.33 3.53
36 37 1.082117 CGCCACGGTACAGATGGAAC 61.082 60.000 15.13 2.39 35.33 3.62
37 38 0.249398 GCCACGGTACAGATGGAACT 59.751 55.000 15.13 0.00 35.33 3.01
38 39 1.739371 GCCACGGTACAGATGGAACTC 60.739 57.143 15.13 0.00 35.33 3.01
39 40 1.469251 CCACGGTACAGATGGAACTCG 60.469 57.143 0.00 0.00 35.33 4.18
40 41 1.471287 CACGGTACAGATGGAACTCGA 59.529 52.381 0.00 0.00 0.00 4.04
64 65 4.463879 CTGGAGTGCGCCCTGGAG 62.464 72.222 4.18 0.00 0.00 3.86
77 78 3.068064 TGGAGAGCGTGCGGATGA 61.068 61.111 0.00 0.00 0.00 2.92
81 82 0.030773 GAGAGCGTGCGGATGATGTA 59.969 55.000 0.00 0.00 0.00 2.29
82 83 0.459899 AGAGCGTGCGGATGATGTAA 59.540 50.000 0.00 0.00 0.00 2.41
115 118 0.321919 GACCAGCAGATCAACAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
120 123 1.072806 AGCAGATCAACAGCCACTTCA 59.927 47.619 0.00 0.00 0.00 3.02
132 135 4.015406 ACTTCATGGGCGCCGTGA 62.015 61.111 24.19 24.19 46.45 4.35
242 252 2.231716 GGGTGGCCCAAACTTATTCT 57.768 50.000 0.00 0.00 44.65 2.40
243 253 3.375647 GGGTGGCCCAAACTTATTCTA 57.624 47.619 0.00 0.00 44.65 2.10
244 254 3.288092 GGGTGGCCCAAACTTATTCTAG 58.712 50.000 0.00 0.00 44.65 2.43
245 255 2.688446 GGTGGCCCAAACTTATTCTAGC 59.312 50.000 0.00 0.00 0.00 3.42
246 256 3.352648 GTGGCCCAAACTTATTCTAGCA 58.647 45.455 0.00 0.00 0.00 3.49
249 259 4.263727 TGGCCCAAACTTATTCTAGCAAGA 60.264 41.667 0.00 0.00 0.00 3.02
250 260 4.336713 GGCCCAAACTTATTCTAGCAAGAG 59.663 45.833 0.00 0.00 31.96 2.85
253 263 6.180472 CCCAAACTTATTCTAGCAAGAGGAA 58.820 40.000 5.81 0.00 31.96 3.36
254 264 6.830838 CCCAAACTTATTCTAGCAAGAGGAAT 59.169 38.462 5.81 0.00 31.96 3.01
255 265 7.340487 CCCAAACTTATTCTAGCAAGAGGAATT 59.660 37.037 5.81 0.00 31.96 2.17
256 266 8.401709 CCAAACTTATTCTAGCAAGAGGAATTC 58.598 37.037 0.00 0.00 31.96 2.17
257 267 8.950210 CAAACTTATTCTAGCAAGAGGAATTCA 58.050 33.333 7.93 0.00 31.96 2.57
259 269 7.856415 ACTTATTCTAGCAAGAGGAATTCAGT 58.144 34.615 7.93 0.00 31.96 3.41
260 270 7.984617 ACTTATTCTAGCAAGAGGAATTCAGTC 59.015 37.037 7.93 3.39 31.96 3.51
261 271 6.558488 ATTCTAGCAAGAGGAATTCAGTCT 57.442 37.500 7.93 5.79 31.96 3.24
262 272 5.336150 TCTAGCAAGAGGAATTCAGTCTG 57.664 43.478 7.93 0.00 0.00 3.51
263 273 4.774726 TCTAGCAAGAGGAATTCAGTCTGT 59.225 41.667 7.93 1.08 0.00 3.41
264 274 4.363991 AGCAAGAGGAATTCAGTCTGTT 57.636 40.909 7.93 0.00 0.00 3.16
265 275 4.070716 AGCAAGAGGAATTCAGTCTGTTG 58.929 43.478 7.93 10.93 35.66 3.33
266 276 4.067896 GCAAGAGGAATTCAGTCTGTTGA 58.932 43.478 18.17 0.00 34.86 3.18
268 278 5.303971 CAAGAGGAATTCAGTCTGTTGAGT 58.696 41.667 7.93 0.00 34.86 3.41
269 279 5.559148 AGAGGAATTCAGTCTGTTGAGTT 57.441 39.130 7.93 0.00 30.77 3.01
271 281 5.070981 AGAGGAATTCAGTCTGTTGAGTTGA 59.929 40.000 7.93 0.00 28.61 3.18
272 282 5.059833 AGGAATTCAGTCTGTTGAGTTGAC 58.940 41.667 7.93 0.00 28.61 3.18
273 283 4.816385 GGAATTCAGTCTGTTGAGTTGACA 59.184 41.667 7.93 0.00 33.56 3.58
274 284 5.277538 GGAATTCAGTCTGTTGAGTTGACAC 60.278 44.000 7.93 0.00 33.56 3.67
275 285 3.179443 TCAGTCTGTTGAGTTGACACC 57.821 47.619 0.00 0.00 33.56 4.16
276 286 2.499693 TCAGTCTGTTGAGTTGACACCA 59.500 45.455 0.00 0.00 33.56 4.17
277 287 3.134623 TCAGTCTGTTGAGTTGACACCAT 59.865 43.478 0.00 0.00 33.56 3.55
278 288 3.879295 CAGTCTGTTGAGTTGACACCATT 59.121 43.478 0.00 0.00 33.56 3.16
281 291 4.335315 GTCTGTTGAGTTGACACCATTTCA 59.665 41.667 0.00 0.00 0.00 2.69
282 292 4.946772 TCTGTTGAGTTGACACCATTTCAA 59.053 37.500 0.00 0.00 0.00 2.69
283 293 5.066375 TCTGTTGAGTTGACACCATTTCAAG 59.934 40.000 0.00 0.00 33.63 3.02
285 295 2.622942 TGAGTTGACACCATTTCAAGGC 59.377 45.455 0.00 0.00 33.63 4.35
286 296 2.622942 GAGTTGACACCATTTCAAGGCA 59.377 45.455 0.00 0.00 33.63 4.75
287 297 3.030291 AGTTGACACCATTTCAAGGCAA 58.970 40.909 0.00 0.00 33.63 4.52
289 299 4.101430 AGTTGACACCATTTCAAGGCAATT 59.899 37.500 0.00 0.00 33.63 2.32
291 301 3.006752 TGACACCATTTCAAGGCAATTCC 59.993 43.478 0.00 0.00 0.00 3.01
292 302 2.302733 ACACCATTTCAAGGCAATTCCC 59.697 45.455 0.00 0.00 34.51 3.97
293 303 1.908619 ACCATTTCAAGGCAATTCCCC 59.091 47.619 0.00 0.00 34.51 4.81
294 304 1.907936 CCATTTCAAGGCAATTCCCCA 59.092 47.619 0.00 0.00 34.51 4.96
295 305 2.355007 CCATTTCAAGGCAATTCCCCAC 60.355 50.000 0.00 0.00 34.51 4.61
296 306 2.094100 TTTCAAGGCAATTCCCCACA 57.906 45.000 0.00 0.00 34.51 4.17
297 307 1.337118 TTCAAGGCAATTCCCCACAC 58.663 50.000 0.00 0.00 34.51 3.82
299 309 1.047002 CAAGGCAATTCCCCACACAA 58.953 50.000 0.00 0.00 34.51 3.33
300 310 1.624813 CAAGGCAATTCCCCACACAAT 59.375 47.619 0.00 0.00 34.51 2.71
301 311 2.028561 AGGCAATTCCCCACACAATT 57.971 45.000 0.00 0.00 34.51 2.32
302 312 3.182887 AGGCAATTCCCCACACAATTA 57.817 42.857 0.00 0.00 34.51 1.40
303 313 3.723325 AGGCAATTCCCCACACAATTAT 58.277 40.909 0.00 0.00 34.51 1.28
304 314 3.451902 AGGCAATTCCCCACACAATTATG 59.548 43.478 0.00 0.00 34.51 1.90
305 315 3.197549 GGCAATTCCCCACACAATTATGT 59.802 43.478 0.00 0.00 41.61 2.29
306 316 4.323409 GGCAATTCCCCACACAATTATGTT 60.323 41.667 0.00 0.00 37.82 2.71
307 317 4.869861 GCAATTCCCCACACAATTATGTTC 59.130 41.667 0.00 0.00 37.82 3.18
308 318 5.337491 GCAATTCCCCACACAATTATGTTCT 60.337 40.000 0.00 0.00 37.82 3.01
309 319 6.700352 CAATTCCCCACACAATTATGTTCTT 58.300 36.000 0.00 0.00 37.82 2.52
311 321 4.735369 TCCCCACACAATTATGTTCTTGT 58.265 39.130 0.00 0.00 37.82 3.16
321 331 9.599322 CACAATTATGTTCTTGTGTCTAAACTC 57.401 33.333 7.14 0.00 44.51 3.01
327 337 7.624360 TGTTCTTGTGTCTAAACTCAAATGT 57.376 32.000 0.00 0.00 38.14 2.71
328 338 8.725405 TGTTCTTGTGTCTAAACTCAAATGTA 57.275 30.769 0.00 0.00 38.14 2.29
330 340 7.724305 TCTTGTGTCTAAACTCAAATGTACC 57.276 36.000 0.00 0.00 38.14 3.34
331 341 7.276658 TCTTGTGTCTAAACTCAAATGTACCA 58.723 34.615 0.00 0.00 38.14 3.25
332 342 7.771361 TCTTGTGTCTAAACTCAAATGTACCAA 59.229 33.333 0.00 0.00 38.14 3.67
333 343 7.254227 TGTGTCTAAACTCAAATGTACCAAC 57.746 36.000 0.00 0.00 0.00 3.77
334 344 7.051623 TGTGTCTAAACTCAAATGTACCAACT 58.948 34.615 0.00 0.00 0.00 3.16
335 345 7.554835 TGTGTCTAAACTCAAATGTACCAACTT 59.445 33.333 0.00 0.00 0.00 2.66
337 347 8.962679 TGTCTAAACTCAAATGTACCAACTTTT 58.037 29.630 0.00 0.00 34.31 2.27
344 354 8.194769 ACTCAAATGTACCAACTTTTACTTTGG 58.805 33.333 0.00 0.00 46.72 3.28
353 363 5.627780 CCAACTTTTACTTTGGTAATCACGC 59.372 40.000 0.00 0.00 37.98 5.34
355 365 4.083696 ACTTTTACTTTGGTAATCACGCCG 60.084 41.667 0.00 0.00 37.69 6.46
356 366 2.747396 TACTTTGGTAATCACGCCGT 57.253 45.000 0.00 0.00 0.00 5.68
357 367 1.886886 ACTTTGGTAATCACGCCGTT 58.113 45.000 0.00 0.00 0.00 4.44
358 368 1.802365 ACTTTGGTAATCACGCCGTTC 59.198 47.619 0.00 0.00 0.00 3.95
359 369 2.073816 CTTTGGTAATCACGCCGTTCT 58.926 47.619 0.00 0.00 0.00 3.01
361 371 2.282701 TGGTAATCACGCCGTTCTAC 57.717 50.000 0.00 0.00 0.00 2.59
362 372 1.820519 TGGTAATCACGCCGTTCTACT 59.179 47.619 0.00 0.00 0.00 2.57
366 376 3.863142 AATCACGCCGTTCTACTACTT 57.137 42.857 0.00 0.00 0.00 2.24
367 377 3.863142 ATCACGCCGTTCTACTACTTT 57.137 42.857 0.00 0.00 0.00 2.66
368 378 2.937591 TCACGCCGTTCTACTACTTTG 58.062 47.619 0.00 0.00 0.00 2.77
369 379 2.294233 TCACGCCGTTCTACTACTTTGT 59.706 45.455 0.00 0.00 0.00 2.83
370 380 3.501828 TCACGCCGTTCTACTACTTTGTA 59.498 43.478 0.00 0.00 0.00 2.41
373 383 4.216257 ACGCCGTTCTACTACTTTGTAAGA 59.784 41.667 0.00 0.00 0.00 2.10
374 384 5.105997 ACGCCGTTCTACTACTTTGTAAGAT 60.106 40.000 0.00 0.00 0.00 2.40
375 385 6.094048 ACGCCGTTCTACTACTTTGTAAGATA 59.906 38.462 0.00 0.00 0.00 1.98
376 386 6.968904 CGCCGTTCTACTACTTTGTAAGATAA 59.031 38.462 0.00 0.00 0.00 1.75
377 387 7.165483 CGCCGTTCTACTACTTTGTAAGATAAG 59.835 40.741 0.00 0.00 0.00 1.73
378 388 8.186821 GCCGTTCTACTACTTTGTAAGATAAGA 58.813 37.037 0.00 0.00 0.00 2.10
379 389 9.719279 CCGTTCTACTACTTTGTAAGATAAGAG 57.281 37.037 0.00 0.00 0.00 2.85
380 390 9.719279 CGTTCTACTACTTTGTAAGATAAGAGG 57.281 37.037 0.00 0.00 0.00 3.69
397 407 9.620259 AGATAAGAGGAAAATTCAAGTATGACC 57.380 33.333 0.00 0.00 34.61 4.02
398 408 6.743575 AAGAGGAAAATTCAAGTATGACCG 57.256 37.500 0.00 0.00 34.61 4.79
399 409 5.186198 AGAGGAAAATTCAAGTATGACCGG 58.814 41.667 0.00 0.00 34.61 5.28
403 413 6.943718 AGGAAAATTCAAGTATGACCGGTTAA 59.056 34.615 9.42 0.00 34.61 2.01
404 414 7.120726 AGGAAAATTCAAGTATGACCGGTTAAG 59.879 37.037 9.42 0.00 34.61 1.85
407 417 7.838771 AATTCAAGTATGACCGGTTAAGTAC 57.161 36.000 9.42 5.18 34.61 2.73
408 418 4.985413 TCAAGTATGACCGGTTAAGTACG 58.015 43.478 9.42 0.00 0.00 3.67
409 419 4.458989 TCAAGTATGACCGGTTAAGTACGT 59.541 41.667 9.42 0.16 0.00 3.57
410 420 4.361451 AGTATGACCGGTTAAGTACGTG 57.639 45.455 9.42 0.00 0.00 4.49
411 421 3.758554 AGTATGACCGGTTAAGTACGTGT 59.241 43.478 9.42 0.00 0.00 4.49
412 422 4.941263 AGTATGACCGGTTAAGTACGTGTA 59.059 41.667 9.42 0.00 0.00 2.90
424 434 4.431661 AGTACGTGTACTTAGGTTCAGC 57.568 45.455 6.85 0.00 43.35 4.26
425 435 3.822735 AGTACGTGTACTTAGGTTCAGCA 59.177 43.478 6.85 0.00 43.35 4.41
426 436 3.955650 ACGTGTACTTAGGTTCAGCAT 57.044 42.857 0.00 0.00 0.00 3.79
427 437 5.649395 AGTACGTGTACTTAGGTTCAGCATA 59.351 40.000 6.85 0.00 43.35 3.14
442 920 7.281100 AGGTTCAGCATAAGTATAAGTTTCTGC 59.719 37.037 0.00 0.00 0.00 4.26
470 953 0.240145 GCCCCTTTGCAACGTTACTC 59.760 55.000 0.00 0.00 0.00 2.59
592 1116 2.273179 CCGGAGAGAACACCGTCCA 61.273 63.158 0.00 0.00 45.93 4.02
677 1268 2.123982 GGGGAAGAGGGCATGCAG 60.124 66.667 21.36 0.00 0.00 4.41
679 1270 1.452833 GGGAAGAGGGCATGCAGAC 60.453 63.158 21.36 9.13 0.00 3.51
680 1271 1.606531 GGAAGAGGGCATGCAGACT 59.393 57.895 21.36 14.17 0.00 3.24
681 1272 0.833287 GGAAGAGGGCATGCAGACTA 59.167 55.000 21.36 0.00 0.00 2.59
682 1273 1.474143 GGAAGAGGGCATGCAGACTAC 60.474 57.143 21.36 6.31 0.00 2.73
683 1274 1.208052 GAAGAGGGCATGCAGACTACA 59.792 52.381 21.36 0.00 0.00 2.74
684 1275 0.829333 AGAGGGCATGCAGACTACAG 59.171 55.000 21.36 0.00 0.00 2.74
685 1276 0.826715 GAGGGCATGCAGACTACAGA 59.173 55.000 21.36 0.00 0.00 3.41
686 1277 0.829333 AGGGCATGCAGACTACAGAG 59.171 55.000 21.36 0.00 0.00 3.35
718 1309 4.810661 GCGCGAGAGGAGCAGCTT 62.811 66.667 12.10 0.00 41.59 3.74
720 1311 2.511145 GCGAGAGGAGCAGCTTGG 60.511 66.667 0.00 0.00 34.19 3.61
723 1314 2.610233 AGAGGAGCAGCTTGGCCT 60.610 61.111 3.32 0.00 0.00 5.19
728 1319 3.557903 GAGCAGCTTGGCCTGGTGA 62.558 63.158 25.05 0.00 43.04 4.02
729 1320 2.362120 GCAGCTTGGCCTGGTGAT 60.362 61.111 25.05 1.90 35.20 3.06
730 1359 1.980772 GCAGCTTGGCCTGGTGATT 60.981 57.895 25.05 0.00 35.20 2.57
765 1429 1.591594 CGTGTCCGACTGTGCTGTT 60.592 57.895 0.00 0.00 35.63 3.16
883 1583 0.721718 GTACCAGCATCGCAGACAAC 59.278 55.000 0.00 0.00 42.51 3.32
973 2268 1.945394 GTAGTAGAACGATCCGCCTCA 59.055 52.381 0.00 0.00 0.00 3.86
974 2269 1.693627 AGTAGAACGATCCGCCTCAT 58.306 50.000 0.00 0.00 0.00 2.90
1320 2809 7.041780 TCGGATTTCATCGGTAAGTACTAGTAC 60.042 40.741 23.03 23.03 36.35 2.73
1322 2811 9.277783 GGATTTCATCGGTAAGTACTAGTACTA 57.722 37.037 30.89 18.10 44.96 1.82
1325 2814 9.618890 TTTCATCGGTAAGTACTAGTACTATGT 57.381 33.333 30.89 20.05 44.96 2.29
1354 2846 5.554070 TGTTACCCTAAAAAGGTACTCTGC 58.446 41.667 0.00 0.00 39.60 4.26
1553 3055 1.071699 AGGCGTGTTGGACAGTACATT 59.928 47.619 0.00 0.00 0.00 2.71
1564 3066 1.618837 ACAGTACATTGCACGAGGTCT 59.381 47.619 0.00 0.00 0.00 3.85
1649 3151 2.505405 TCAACTGAGTCGCTCTGTAGT 58.495 47.619 15.67 6.29 40.75 2.73
1707 3234 2.311124 GCGTCATTGGCCTAAGTAGT 57.689 50.000 3.32 0.00 0.00 2.73
1726 3253 3.861840 AGTCCCAACAATGTGAGTATCG 58.138 45.455 0.00 0.00 38.61 2.92
1992 3526 6.201806 CGATATTTTTGAAAACTTGGGTGCAA 59.798 34.615 0.00 0.00 0.00 4.08
2016 3550 8.620416 CAACCATCCATAACGATAATCTGAAAA 58.380 33.333 0.00 0.00 0.00 2.29
2105 3642 5.365314 TCATGTGGCAGGTATGTATCTACAA 59.635 40.000 0.00 0.00 39.99 2.41
2106 3643 5.887214 TGTGGCAGGTATGTATCTACAAT 57.113 39.130 0.00 0.00 39.99 2.71
2107 3644 6.247229 TGTGGCAGGTATGTATCTACAATT 57.753 37.500 0.00 0.00 39.99 2.32
2108 3645 6.288294 TGTGGCAGGTATGTATCTACAATTC 58.712 40.000 0.00 0.00 39.99 2.17
2109 3646 6.099701 TGTGGCAGGTATGTATCTACAATTCT 59.900 38.462 0.00 0.00 39.99 2.40
2110 3647 6.425114 GTGGCAGGTATGTATCTACAATTCTG 59.575 42.308 0.00 4.17 39.99 3.02
2111 3648 5.409826 GGCAGGTATGTATCTACAATTCTGC 59.590 44.000 21.02 21.02 45.00 4.26
2112 3649 5.991606 GCAGGTATGTATCTACAATTCTGCA 59.008 40.000 22.57 0.00 45.04 4.41
2185 3723 3.435671 GGGGTTTGATCGTGTACTTGAAG 59.564 47.826 0.00 0.00 0.00 3.02
2329 3868 2.170187 GGACAGCAAGATGAGTCATCCT 59.830 50.000 26.14 13.58 41.36 3.24
2332 3871 2.100418 CAGCAAGATGAGTCATCCTCGA 59.900 50.000 26.14 0.00 43.64 4.04
2408 3947 1.479205 GCATCCAACCCATGCAGGATA 60.479 52.381 0.00 0.00 45.19 2.59
2439 3978 5.521735 TGTCATGAAACAATTGGAAAAACCG 59.478 36.000 10.83 0.00 42.61 4.44
2521 4061 3.386078 TGTATCCAGATGACAGCCTTCTC 59.614 47.826 0.00 0.00 0.00 2.87
2564 4161 8.869109 TCATGTATTTCAAAGACTGGGATTTTT 58.131 29.630 0.00 0.00 0.00 1.94
2734 4351 8.746530 CAATATATAAGCTCAAGGCAATTCCAT 58.253 33.333 0.00 0.00 44.79 3.41
2777 4398 1.277273 GGCTTTGTAGTCTACCGGGTT 59.723 52.381 4.31 0.00 0.00 4.11
2782 4403 2.713967 TAGTCTACCGGGTTGGCGC 61.714 63.158 4.31 0.00 43.94 6.53
2789 4410 2.189521 CGGGTTGGCGCCTTCTAT 59.810 61.111 29.70 0.00 0.00 1.98
2790 4411 1.444250 CGGGTTGGCGCCTTCTATA 59.556 57.895 29.70 1.94 0.00 1.31
2800 4421 2.928731 GCGCCTTCTATAGATGACAGGC 60.929 54.545 24.56 24.56 42.96 4.85
2841 4462 4.325109 GGGACTAAGGAGGGTAAATTTGCT 60.325 45.833 6.23 0.00 0.00 3.91
2909 6134 1.148273 TGCTCAAACCCGCTCAACT 59.852 52.632 0.00 0.00 0.00 3.16
2911 6136 1.079503 GCTCAAACCCGCTCAACTAG 58.920 55.000 0.00 0.00 0.00 2.57
2914 6139 1.068474 CAAACCCGCTCAACTAGTCG 58.932 55.000 0.00 0.00 0.00 4.18
2917 6142 1.153823 CCCGCTCAACTAGTCGTGG 60.154 63.158 0.00 4.19 0.00 4.94
2918 6143 1.153823 CCGCTCAACTAGTCGTGGG 60.154 63.158 0.00 0.00 0.00 4.61
2919 6144 1.585006 CGCTCAACTAGTCGTGGGT 59.415 57.895 0.00 0.00 0.00 4.51
2921 6146 1.404391 CGCTCAACTAGTCGTGGGTAT 59.596 52.381 0.00 0.00 0.00 2.73
2926 6151 5.870978 GCTCAACTAGTCGTGGGTATAAAAA 59.129 40.000 0.00 0.00 0.00 1.94
2929 6154 7.388437 TCAACTAGTCGTGGGTATAAAAACAT 58.612 34.615 0.00 0.00 0.00 2.71
2969 6194 1.442769 CAACCAGATCCAACAGTCCG 58.557 55.000 0.00 0.00 0.00 4.79
2970 6195 1.001974 CAACCAGATCCAACAGTCCGA 59.998 52.381 0.00 0.00 0.00 4.55
2974 6199 2.093500 CCAGATCCAACAGTCCGATTGA 60.093 50.000 0.00 0.00 0.00 2.57
2975 6200 3.432749 CCAGATCCAACAGTCCGATTGAT 60.433 47.826 0.00 0.00 0.00 2.57
2980 6206 2.436417 CAACAGTCCGATTGATGGGTT 58.564 47.619 0.00 0.00 0.00 4.11
2981 6207 2.113860 ACAGTCCGATTGATGGGTTG 57.886 50.000 0.00 0.00 0.00 3.77
2995 6221 6.515272 TGATGGGTTGATAGCTTTTTCTTC 57.485 37.500 0.00 0.00 0.00 2.87
3041 6269 2.038295 CCTATTGCCATCTCAGAGTCCC 59.962 54.545 0.00 0.00 0.00 4.46
3047 6275 3.013219 GCCATCTCAGAGTCCCTTTTTC 58.987 50.000 0.00 0.00 0.00 2.29
3104 6338 2.580815 CGCTGAGGCTGGATGTCA 59.419 61.111 0.00 0.00 36.09 3.58
3111 6345 3.717294 GCTGGATGTCACCGGGGT 61.717 66.667 2.12 0.00 36.85 4.95
3127 6361 2.124695 GTGGGGCCTTCGTCATCC 60.125 66.667 0.84 0.00 0.00 3.51
3178 6413 1.221293 GCTCAGCAGCATCTGGTCT 59.779 57.895 0.00 0.00 46.06 3.85
3187 6422 3.001414 CAGCATCTGGTCTTGTCTGAAG 58.999 50.000 0.00 0.00 0.00 3.02
3190 6425 0.687354 TCTGGTCTTGTCTGAAGCCC 59.313 55.000 0.00 0.00 0.00 5.19
3192 6427 0.843309 TGGTCTTGTCTGAAGCCCAA 59.157 50.000 0.00 0.00 0.00 4.12
3266 6501 9.421806 TGTAAAATAATGGCAATTCTTGAGTTG 57.578 29.630 0.00 2.15 0.00 3.16
3269 6504 4.942761 AATGGCAATTCTTGAGTTGTGT 57.057 36.364 0.00 0.00 0.00 3.72
3274 6509 3.550842 GCAATTCTTGAGTTGTGTGGACC 60.551 47.826 7.50 0.00 0.00 4.46
3315 6550 0.652592 AACTATGCAGCGCGATCAAC 59.347 50.000 12.10 0.00 0.00 3.18
3330 6571 4.478699 CGATCAACATGCAATTCACTTGT 58.521 39.130 0.00 0.00 37.18 3.16
3387 6754 6.391227 TTTTTGAGAAATCTCGCCTTCTTT 57.609 33.333 5.99 0.00 45.72 2.52
3388 6755 7.504924 TTTTTGAGAAATCTCGCCTTCTTTA 57.495 32.000 5.99 0.00 45.72 1.85
3389 6756 6.481954 TTTGAGAAATCTCGCCTTCTTTAC 57.518 37.500 5.99 0.00 45.72 2.01
3390 6757 5.407407 TGAGAAATCTCGCCTTCTTTACT 57.593 39.130 5.99 0.00 45.72 2.24
3391 6758 5.171476 TGAGAAATCTCGCCTTCTTTACTG 58.829 41.667 5.99 0.00 45.72 2.74
3392 6759 3.935828 AGAAATCTCGCCTTCTTTACTGC 59.064 43.478 0.00 0.00 0.00 4.40
3393 6760 3.618690 AATCTCGCCTTCTTTACTGCT 57.381 42.857 0.00 0.00 0.00 4.24
3394 6761 2.656560 TCTCGCCTTCTTTACTGCTC 57.343 50.000 0.00 0.00 0.00 4.26
3395 6762 1.893137 TCTCGCCTTCTTTACTGCTCA 59.107 47.619 0.00 0.00 0.00 4.26
3396 6763 2.299013 TCTCGCCTTCTTTACTGCTCAA 59.701 45.455 0.00 0.00 0.00 3.02
3397 6764 3.055819 TCTCGCCTTCTTTACTGCTCAAT 60.056 43.478 0.00 0.00 0.00 2.57
3398 6765 4.159693 TCTCGCCTTCTTTACTGCTCAATA 59.840 41.667 0.00 0.00 0.00 1.90
3399 6766 4.827692 TCGCCTTCTTTACTGCTCAATAA 58.172 39.130 0.00 0.00 0.00 1.40
3400 6767 5.428253 TCGCCTTCTTTACTGCTCAATAAT 58.572 37.500 0.00 0.00 0.00 1.28
3401 6768 5.880332 TCGCCTTCTTTACTGCTCAATAATT 59.120 36.000 0.00 0.00 0.00 1.40
3402 6769 7.045416 TCGCCTTCTTTACTGCTCAATAATTA 58.955 34.615 0.00 0.00 0.00 1.40
3403 6770 7.551262 TCGCCTTCTTTACTGCTCAATAATTAA 59.449 33.333 0.00 0.00 0.00 1.40
3404 6771 8.181573 CGCCTTCTTTACTGCTCAATAATTAAA 58.818 33.333 0.00 0.00 0.00 1.52
3405 6772 9.508567 GCCTTCTTTACTGCTCAATAATTAAAG 57.491 33.333 0.00 0.00 0.00 1.85
3427 6794 6.764308 AGATACAATGTTTTGGTCATGAGG 57.236 37.500 0.00 0.00 37.15 3.86
3428 6795 6.484288 AGATACAATGTTTTGGTCATGAGGA 58.516 36.000 0.00 0.00 37.15 3.71
3429 6796 6.600822 AGATACAATGTTTTGGTCATGAGGAG 59.399 38.462 0.00 0.00 37.15 3.69
3430 6797 4.728772 ACAATGTTTTGGTCATGAGGAGA 58.271 39.130 0.00 0.00 37.15 3.71
3431 6798 4.520492 ACAATGTTTTGGTCATGAGGAGAC 59.480 41.667 0.00 0.00 37.15 3.36
3437 6804 3.863407 GTCATGAGGAGACCCCAAC 57.137 57.895 0.00 0.00 37.41 3.77
3438 6805 1.280457 GTCATGAGGAGACCCCAACT 58.720 55.000 0.00 0.00 37.41 3.16
3439 6806 2.467880 GTCATGAGGAGACCCCAACTA 58.532 52.381 0.00 0.00 37.41 2.24
3440 6807 2.838202 GTCATGAGGAGACCCCAACTAA 59.162 50.000 0.00 0.00 37.41 2.24
3441 6808 3.263425 GTCATGAGGAGACCCCAACTAAA 59.737 47.826 0.00 0.00 37.41 1.85
3442 6809 3.263425 TCATGAGGAGACCCCAACTAAAC 59.737 47.826 0.00 0.00 37.41 2.01
3443 6810 2.696775 TGAGGAGACCCCAACTAAACA 58.303 47.619 0.00 0.00 37.41 2.83
3444 6811 3.256704 TGAGGAGACCCCAACTAAACAT 58.743 45.455 0.00 0.00 37.41 2.71
3445 6812 3.009033 TGAGGAGACCCCAACTAAACATG 59.991 47.826 0.00 0.00 37.41 3.21
3446 6813 3.256704 AGGAGACCCCAACTAAACATGA 58.743 45.455 0.00 0.00 37.41 3.07
3447 6814 3.009143 AGGAGACCCCAACTAAACATGAC 59.991 47.826 0.00 0.00 37.41 3.06
3448 6815 3.000727 GAGACCCCAACTAAACATGACG 58.999 50.000 0.00 0.00 0.00 4.35
3449 6816 2.635915 AGACCCCAACTAAACATGACGA 59.364 45.455 0.00 0.00 0.00 4.20
3450 6817 2.740447 GACCCCAACTAAACATGACGAC 59.260 50.000 0.00 0.00 0.00 4.34
3451 6818 2.081462 CCCCAACTAAACATGACGACC 58.919 52.381 0.00 0.00 0.00 4.79
3452 6819 2.290071 CCCCAACTAAACATGACGACCT 60.290 50.000 0.00 0.00 0.00 3.85
3453 6820 3.055675 CCCCAACTAAACATGACGACCTA 60.056 47.826 0.00 0.00 0.00 3.08
3454 6821 4.383770 CCCCAACTAAACATGACGACCTAT 60.384 45.833 0.00 0.00 0.00 2.57
3455 6822 5.163385 CCCCAACTAAACATGACGACCTATA 60.163 44.000 0.00 0.00 0.00 1.31
3456 6823 5.751990 CCCAACTAAACATGACGACCTATAC 59.248 44.000 0.00 0.00 0.00 1.47
3457 6824 5.751990 CCAACTAAACATGACGACCTATACC 59.248 44.000 0.00 0.00 0.00 2.73
3458 6825 6.406624 CCAACTAAACATGACGACCTATACCT 60.407 42.308 0.00 0.00 0.00 3.08
3459 6826 7.201848 CCAACTAAACATGACGACCTATACCTA 60.202 40.741 0.00 0.00 0.00 3.08
3460 6827 7.886629 ACTAAACATGACGACCTATACCTAA 57.113 36.000 0.00 0.00 0.00 2.69
3461 6828 8.297470 ACTAAACATGACGACCTATACCTAAA 57.703 34.615 0.00 0.00 0.00 1.85
3462 6829 8.921205 ACTAAACATGACGACCTATACCTAAAT 58.079 33.333 0.00 0.00 0.00 1.40
3463 6830 9.760077 CTAAACATGACGACCTATACCTAAATT 57.240 33.333 0.00 0.00 0.00 1.82
3465 6832 9.538508 AAACATGACGACCTATACCTAAATTAC 57.461 33.333 0.00 0.00 0.00 1.89
3466 6833 8.241497 ACATGACGACCTATACCTAAATTACA 57.759 34.615 0.00 0.00 0.00 2.41
3467 6834 8.698210 ACATGACGACCTATACCTAAATTACAA 58.302 33.333 0.00 0.00 0.00 2.41
3468 6835 8.975439 CATGACGACCTATACCTAAATTACAAC 58.025 37.037 0.00 0.00 0.00 3.32
3469 6836 7.491682 TGACGACCTATACCTAAATTACAACC 58.508 38.462 0.00 0.00 0.00 3.77
3470 6837 7.123997 TGACGACCTATACCTAAATTACAACCA 59.876 37.037 0.00 0.00 0.00 3.67
3471 6838 7.850193 ACGACCTATACCTAAATTACAACCAA 58.150 34.615 0.00 0.00 0.00 3.67
3472 6839 8.320617 ACGACCTATACCTAAATTACAACCAAA 58.679 33.333 0.00 0.00 0.00 3.28
3473 6840 8.606602 CGACCTATACCTAAATTACAACCAAAC 58.393 37.037 0.00 0.00 0.00 2.93
3474 6841 9.676861 GACCTATACCTAAATTACAACCAAACT 57.323 33.333 0.00 0.00 0.00 2.66
3479 6846 6.731164 ACCTAAATTACAACCAAACTTGACG 58.269 36.000 0.00 0.00 0.00 4.35
3480 6847 6.543100 ACCTAAATTACAACCAAACTTGACGA 59.457 34.615 0.00 0.00 0.00 4.20
3481 6848 7.075741 CCTAAATTACAACCAAACTTGACGAG 58.924 38.462 0.00 0.00 0.00 4.18
3482 6849 6.687081 AAATTACAACCAAACTTGACGAGA 57.313 33.333 0.00 0.00 0.00 4.04
3483 6850 6.877611 AATTACAACCAAACTTGACGAGAT 57.122 33.333 0.00 0.00 0.00 2.75
3484 6851 6.877611 ATTACAACCAAACTTGACGAGATT 57.122 33.333 0.00 0.00 0.00 2.40
3485 6852 7.972832 ATTACAACCAAACTTGACGAGATTA 57.027 32.000 0.00 0.00 0.00 1.75
3486 6853 7.972832 TTACAACCAAACTTGACGAGATTAT 57.027 32.000 0.00 0.00 0.00 1.28
3487 6854 6.241207 ACAACCAAACTTGACGAGATTATG 57.759 37.500 0.00 0.00 0.00 1.90
3488 6855 4.946784 ACCAAACTTGACGAGATTATGC 57.053 40.909 0.00 0.00 0.00 3.14
3489 6856 3.370978 ACCAAACTTGACGAGATTATGCG 59.629 43.478 0.00 0.00 0.00 4.73
3490 6857 3.345714 CAAACTTGACGAGATTATGCGC 58.654 45.455 0.00 0.00 0.00 6.09
3491 6858 2.586258 ACTTGACGAGATTATGCGCT 57.414 45.000 9.73 0.00 0.00 5.92
3492 6859 2.893637 ACTTGACGAGATTATGCGCTT 58.106 42.857 9.73 4.59 0.00 4.68
3493 6860 2.860735 ACTTGACGAGATTATGCGCTTC 59.139 45.455 9.73 0.13 0.00 3.86
3494 6861 1.477105 TGACGAGATTATGCGCTTCG 58.523 50.000 9.73 10.74 0.00 3.79
3495 6862 1.064952 TGACGAGATTATGCGCTTCGA 59.935 47.619 9.73 0.00 0.00 3.71
3496 6863 2.117137 GACGAGATTATGCGCTTCGAA 58.883 47.619 9.73 0.00 0.00 3.71
3497 6864 2.534349 GACGAGATTATGCGCTTCGAAA 59.466 45.455 9.73 0.00 0.00 3.46
3498 6865 3.123804 ACGAGATTATGCGCTTCGAAAT 58.876 40.909 9.73 0.00 0.00 2.17
3499 6866 3.555956 ACGAGATTATGCGCTTCGAAATT 59.444 39.130 9.73 0.00 0.00 1.82
3500 6867 4.743151 ACGAGATTATGCGCTTCGAAATTA 59.257 37.500 9.73 0.00 0.00 1.40
3501 6868 5.233476 ACGAGATTATGCGCTTCGAAATTAA 59.767 36.000 9.73 0.00 0.00 1.40
3502 6869 6.126741 CGAGATTATGCGCTTCGAAATTAAA 58.873 36.000 9.73 0.00 0.00 1.52
3503 6870 6.627276 CGAGATTATGCGCTTCGAAATTAAAA 59.373 34.615 9.73 0.00 0.00 1.52
3504 6871 7.163520 CGAGATTATGCGCTTCGAAATTAAAAA 59.836 33.333 9.73 0.00 0.00 1.94
3505 6872 8.327832 AGATTATGCGCTTCGAAATTAAAAAG 57.672 30.769 9.73 0.00 0.00 2.27
3506 6873 7.968405 AGATTATGCGCTTCGAAATTAAAAAGT 59.032 29.630 9.73 0.00 0.00 2.66
3507 6874 5.992489 ATGCGCTTCGAAATTAAAAAGTC 57.008 34.783 9.73 0.00 0.00 3.01
3508 6875 5.103290 TGCGCTTCGAAATTAAAAAGTCT 57.897 34.783 9.73 0.00 0.00 3.24
3509 6876 6.230849 TGCGCTTCGAAATTAAAAAGTCTA 57.769 33.333 9.73 0.00 0.00 2.59
3510 6877 6.075280 TGCGCTTCGAAATTAAAAAGTCTAC 58.925 36.000 9.73 0.00 0.00 2.59
3511 6878 5.222488 GCGCTTCGAAATTAAAAAGTCTACG 59.778 40.000 0.00 0.00 0.00 3.51
3512 6879 6.294363 CGCTTCGAAATTAAAAAGTCTACGT 58.706 36.000 0.00 0.00 0.00 3.57
3513 6880 6.788930 CGCTTCGAAATTAAAAAGTCTACGTT 59.211 34.615 0.00 0.00 0.00 3.99
3514 6881 7.005067 CGCTTCGAAATTAAAAAGTCTACGTTC 59.995 37.037 0.00 0.00 0.00 3.95
3515 6882 7.795272 GCTTCGAAATTAAAAAGTCTACGTTCA 59.205 33.333 0.00 0.00 0.00 3.18
3516 6883 9.807386 CTTCGAAATTAAAAAGTCTACGTTCAT 57.193 29.630 0.00 0.00 0.00 2.57
3517 6884 9.588774 TTCGAAATTAAAAAGTCTACGTTCATG 57.411 29.630 0.00 0.00 0.00 3.07
3518 6885 8.980610 TCGAAATTAAAAAGTCTACGTTCATGA 58.019 29.630 0.00 0.00 0.00 3.07
3519 6886 9.250986 CGAAATTAAAAAGTCTACGTTCATGAG 57.749 33.333 0.00 0.00 0.00 2.90
3521 6888 9.878599 AAATTAAAAAGTCTACGTTCATGAGTG 57.121 29.630 0.00 0.00 0.00 3.51
3522 6889 8.827177 ATTAAAAAGTCTACGTTCATGAGTGA 57.173 30.769 0.00 0.00 0.00 3.41
3523 6890 8.651391 TTAAAAAGTCTACGTTCATGAGTGAA 57.349 30.769 0.00 0.00 41.89 3.18
3524 6891 7.548196 AAAAAGTCTACGTTCATGAGTGAAA 57.452 32.000 0.00 0.00 45.38 2.69
3525 6892 6.771188 AAAGTCTACGTTCATGAGTGAAAG 57.229 37.500 0.00 3.20 45.38 2.62
3538 6905 8.797350 TCATGAGTGAAAGTACATGAAATCAT 57.203 30.769 0.00 0.00 43.56 2.45
3539 6906 9.889128 TCATGAGTGAAAGTACATGAAATCATA 57.111 29.630 0.00 0.00 43.56 2.15
3542 6909 9.889128 TGAGTGAAAGTACATGAAATCATATCA 57.111 29.630 0.00 3.38 34.26 2.15
3570 6937 8.821686 TTTTCTAGCAATTATTTCCTGGATGA 57.178 30.769 0.00 0.00 0.00 2.92
3571 6938 9.425248 TTTTCTAGCAATTATTTCCTGGATGAT 57.575 29.630 0.00 0.00 0.00 2.45
3572 6939 7.991084 TCTAGCAATTATTTCCTGGATGATG 57.009 36.000 0.00 0.00 0.00 3.07
3573 6940 6.944290 TCTAGCAATTATTTCCTGGATGATGG 59.056 38.462 0.00 0.00 0.00 3.51
3574 6941 4.282703 AGCAATTATTTCCTGGATGATGGC 59.717 41.667 0.00 0.00 0.00 4.40
3575 6942 4.039488 GCAATTATTTCCTGGATGATGGCA 59.961 41.667 0.00 0.00 0.00 4.92
3576 6943 5.535333 CAATTATTTCCTGGATGATGGCAC 58.465 41.667 0.00 0.00 0.00 5.01
3577 6944 2.077687 ATTTCCTGGATGATGGCACC 57.922 50.000 0.00 0.00 0.00 5.01
3578 6945 0.703488 TTTCCTGGATGATGGCACCA 59.297 50.000 0.00 0.00 0.00 4.17
3579 6946 0.928505 TTCCTGGATGATGGCACCAT 59.071 50.000 0.66 0.66 39.69 3.55
3580 6947 0.184211 TCCTGGATGATGGCACCATG 59.816 55.000 6.96 0.00 36.70 3.66
3581 6948 0.184211 CCTGGATGATGGCACCATGA 59.816 55.000 6.96 0.00 36.70 3.07
3582 6949 1.203013 CCTGGATGATGGCACCATGAT 60.203 52.381 6.96 3.75 36.70 2.45
3583 6950 2.040679 CCTGGATGATGGCACCATGATA 59.959 50.000 6.96 0.00 36.70 2.15
3584 6951 3.308904 CCTGGATGATGGCACCATGATAT 60.309 47.826 6.96 0.00 36.70 1.63
3585 6952 3.945921 CTGGATGATGGCACCATGATATC 59.054 47.826 6.96 8.00 36.70 1.63
3586 6953 3.285484 GGATGATGGCACCATGATATCC 58.715 50.000 6.96 12.79 36.70 2.59
3587 6954 3.053842 GGATGATGGCACCATGATATCCT 60.054 47.826 19.97 0.00 36.35 3.24
3588 6955 3.708403 TGATGGCACCATGATATCCTC 57.292 47.619 6.96 0.00 36.70 3.71
3589 6956 2.306805 TGATGGCACCATGATATCCTCC 59.693 50.000 6.96 0.00 36.70 4.30
3590 6957 1.067295 TGGCACCATGATATCCTCCC 58.933 55.000 0.00 0.00 0.00 4.30
3591 6958 0.036010 GGCACCATGATATCCTCCCG 60.036 60.000 0.00 0.00 0.00 5.14
3592 6959 0.976641 GCACCATGATATCCTCCCGA 59.023 55.000 0.00 0.00 0.00 5.14
3593 6960 1.338200 GCACCATGATATCCTCCCGAC 60.338 57.143 0.00 0.00 0.00 4.79
3594 6961 1.276421 CACCATGATATCCTCCCGACC 59.724 57.143 0.00 0.00 0.00 4.79
3595 6962 0.905357 CCATGATATCCTCCCGACCC 59.095 60.000 0.00 0.00 0.00 4.46
3596 6963 1.553417 CCATGATATCCTCCCGACCCT 60.553 57.143 0.00 0.00 0.00 4.34
3597 6964 2.260822 CATGATATCCTCCCGACCCTT 58.739 52.381 0.00 0.00 0.00 3.95
3598 6965 1.717032 TGATATCCTCCCGACCCTTG 58.283 55.000 0.00 0.00 0.00 3.61
3599 6966 0.321996 GATATCCTCCCGACCCTTGC 59.678 60.000 0.00 0.00 0.00 4.01
3600 6967 0.104934 ATATCCTCCCGACCCTTGCT 60.105 55.000 0.00 0.00 0.00 3.91
3601 6968 0.326238 TATCCTCCCGACCCTTGCTT 60.326 55.000 0.00 0.00 0.00 3.91
3602 6969 0.326238 ATCCTCCCGACCCTTGCTTA 60.326 55.000 0.00 0.00 0.00 3.09
3603 6970 0.545787 TCCTCCCGACCCTTGCTTAA 60.546 55.000 0.00 0.00 0.00 1.85
3604 6971 0.546598 CCTCCCGACCCTTGCTTAAT 59.453 55.000 0.00 0.00 0.00 1.40
3605 6972 1.668419 CTCCCGACCCTTGCTTAATG 58.332 55.000 0.00 0.00 0.00 1.90
3606 6973 0.988832 TCCCGACCCTTGCTTAATGT 59.011 50.000 0.00 0.00 0.00 2.71
3607 6974 1.353022 TCCCGACCCTTGCTTAATGTT 59.647 47.619 0.00 0.00 0.00 2.71
3608 6975 1.743394 CCCGACCCTTGCTTAATGTTC 59.257 52.381 0.00 0.00 0.00 3.18
3609 6976 2.618045 CCCGACCCTTGCTTAATGTTCT 60.618 50.000 0.00 0.00 0.00 3.01
3610 6977 3.081804 CCGACCCTTGCTTAATGTTCTT 58.918 45.455 0.00 0.00 0.00 2.52
3611 6978 3.127030 CCGACCCTTGCTTAATGTTCTTC 59.873 47.826 0.00 0.00 0.00 2.87
3612 6979 3.751175 CGACCCTTGCTTAATGTTCTTCA 59.249 43.478 0.00 0.00 0.00 3.02
3613 6980 4.378459 CGACCCTTGCTTAATGTTCTTCAC 60.378 45.833 0.00 0.00 0.00 3.18
3614 6981 3.826729 ACCCTTGCTTAATGTTCTTCACC 59.173 43.478 0.00 0.00 0.00 4.02
3615 6982 3.826157 CCCTTGCTTAATGTTCTTCACCA 59.174 43.478 0.00 0.00 0.00 4.17
3616 6983 4.321230 CCCTTGCTTAATGTTCTTCACCAC 60.321 45.833 0.00 0.00 0.00 4.16
3617 6984 4.520492 CCTTGCTTAATGTTCTTCACCACT 59.480 41.667 0.00 0.00 0.00 4.00
3618 6985 5.010012 CCTTGCTTAATGTTCTTCACCACTT 59.990 40.000 0.00 0.00 0.00 3.16
3619 6986 5.689383 TGCTTAATGTTCTTCACCACTTC 57.311 39.130 0.00 0.00 0.00 3.01
3620 6987 4.518970 TGCTTAATGTTCTTCACCACTTCC 59.481 41.667 0.00 0.00 0.00 3.46
3621 6988 4.762251 GCTTAATGTTCTTCACCACTTCCT 59.238 41.667 0.00 0.00 0.00 3.36
3622 6989 5.106515 GCTTAATGTTCTTCACCACTTCCTC 60.107 44.000 0.00 0.00 0.00 3.71
3623 6990 4.437682 AATGTTCTTCACCACTTCCTCA 57.562 40.909 0.00 0.00 0.00 3.86
3624 6991 3.194005 TGTTCTTCACCACTTCCTCAC 57.806 47.619 0.00 0.00 0.00 3.51
3625 6992 2.503765 TGTTCTTCACCACTTCCTCACA 59.496 45.455 0.00 0.00 0.00 3.58
3626 6993 3.054728 TGTTCTTCACCACTTCCTCACAA 60.055 43.478 0.00 0.00 0.00 3.33
3627 6994 4.137543 GTTCTTCACCACTTCCTCACAAT 58.862 43.478 0.00 0.00 0.00 2.71
3628 6995 4.008074 TCTTCACCACTTCCTCACAATC 57.992 45.455 0.00 0.00 0.00 2.67
3629 6996 3.648067 TCTTCACCACTTCCTCACAATCT 59.352 43.478 0.00 0.00 0.00 2.40
3630 6997 3.407424 TCACCACTTCCTCACAATCTG 57.593 47.619 0.00 0.00 0.00 2.90
3631 6998 2.972021 TCACCACTTCCTCACAATCTGA 59.028 45.455 0.00 0.00 0.00 3.27
3632 6999 3.390967 TCACCACTTCCTCACAATCTGAA 59.609 43.478 0.00 0.00 0.00 3.02
3633 7000 3.750130 CACCACTTCCTCACAATCTGAAG 59.250 47.826 0.00 0.00 39.99 3.02
3634 7001 2.746362 CCACTTCCTCACAATCTGAAGC 59.254 50.000 0.00 0.00 38.17 3.86
3635 7002 3.405831 CACTTCCTCACAATCTGAAGCA 58.594 45.455 0.00 0.00 38.17 3.91
3636 7003 3.817084 CACTTCCTCACAATCTGAAGCAA 59.183 43.478 0.00 0.00 38.17 3.91
3637 7004 3.817647 ACTTCCTCACAATCTGAAGCAAC 59.182 43.478 0.00 0.00 38.17 4.17
3638 7005 2.416747 TCCTCACAATCTGAAGCAACG 58.583 47.619 0.00 0.00 0.00 4.10
3639 7006 2.146342 CCTCACAATCTGAAGCAACGT 58.854 47.619 0.00 0.00 0.00 3.99
3640 7007 2.096069 CCTCACAATCTGAAGCAACGTG 60.096 50.000 0.00 0.00 0.00 4.49
3641 7008 1.264020 TCACAATCTGAAGCAACGTGC 59.736 47.619 0.00 0.00 45.46 5.34
3648 7015 1.812235 TGAAGCAACGTGCATCATCT 58.188 45.000 11.86 0.00 44.77 2.90
3649 7016 1.465777 TGAAGCAACGTGCATCATCTG 59.534 47.619 11.86 0.00 44.77 2.90
3650 7017 2.871236 TGAAGCAACGTGCATCATCTGA 60.871 45.455 11.86 0.00 44.77 3.27
3651 7018 4.359118 TGAAGCAACGTGCATCATCTGAA 61.359 43.478 11.86 0.00 44.77 3.02
3652 7019 2.838386 GCAACGTGCATCATCTGAAT 57.162 45.000 0.00 0.00 44.26 2.57
3653 7020 3.141002 GCAACGTGCATCATCTGAATT 57.859 42.857 0.00 0.00 44.26 2.17
3654 7021 3.103738 GCAACGTGCATCATCTGAATTC 58.896 45.455 0.00 0.00 44.26 2.17
3655 7022 3.688272 CAACGTGCATCATCTGAATTCC 58.312 45.455 2.27 0.00 0.00 3.01
3656 7023 2.292267 ACGTGCATCATCTGAATTCCC 58.708 47.619 2.27 0.00 0.00 3.97
3657 7024 2.291365 CGTGCATCATCTGAATTCCCA 58.709 47.619 2.27 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.736826 GCGGAGGAAGAAGGGGGAG 61.737 68.421 0.00 0.00 0.00 4.30
5 6 2.269241 GTGGCGGAGGAAGAAGGG 59.731 66.667 0.00 0.00 0.00 3.95
6 7 2.125512 CGTGGCGGAGGAAGAAGG 60.126 66.667 0.00 0.00 0.00 3.46
17 18 1.082117 GTTCCATCTGTACCGTGGCG 61.082 60.000 3.99 0.00 33.01 5.69
18 19 0.249398 AGTTCCATCTGTACCGTGGC 59.751 55.000 3.99 0.00 33.01 5.01
19 20 1.469251 CGAGTTCCATCTGTACCGTGG 60.469 57.143 0.00 0.00 0.00 4.94
20 21 1.471287 TCGAGTTCCATCTGTACCGTG 59.529 52.381 0.00 0.00 0.00 4.94
21 22 1.830279 TCGAGTTCCATCTGTACCGT 58.170 50.000 0.00 0.00 0.00 4.83
22 23 2.602456 CGATCGAGTTCCATCTGTACCG 60.602 54.545 10.26 0.00 0.00 4.02
23 24 2.617308 TCGATCGAGTTCCATCTGTACC 59.383 50.000 15.15 0.00 0.00 3.34
24 25 3.619729 GTCGATCGAGTTCCATCTGTAC 58.380 50.000 20.09 0.00 0.00 2.90
25 26 2.287103 CGTCGATCGAGTTCCATCTGTA 59.713 50.000 20.09 0.00 42.86 2.74
26 27 1.064208 CGTCGATCGAGTTCCATCTGT 59.936 52.381 20.09 0.00 42.86 3.41
27 28 1.747956 CGTCGATCGAGTTCCATCTG 58.252 55.000 20.09 0.00 42.86 2.90
28 29 0.029567 GCGTCGATCGAGTTCCATCT 59.970 55.000 20.09 0.00 42.86 2.90
29 30 0.029567 AGCGTCGATCGAGTTCCATC 59.970 55.000 20.09 3.65 42.86 3.51
30 31 0.248661 CAGCGTCGATCGAGTTCCAT 60.249 55.000 20.09 0.00 42.86 3.41
31 32 1.136774 CAGCGTCGATCGAGTTCCA 59.863 57.895 20.09 0.00 42.86 3.53
32 33 1.586564 CCAGCGTCGATCGAGTTCC 60.587 63.158 20.09 5.66 42.86 3.62
33 34 0.590230 CTCCAGCGTCGATCGAGTTC 60.590 60.000 20.09 10.42 42.86 3.01
34 35 1.306642 ACTCCAGCGTCGATCGAGTT 61.307 55.000 20.09 8.03 42.86 3.01
35 36 1.745864 ACTCCAGCGTCGATCGAGT 60.746 57.895 20.09 4.88 42.86 4.18
36 37 1.297967 CACTCCAGCGTCGATCGAG 60.298 63.158 20.09 13.60 42.86 4.04
37 38 2.791927 CACTCCAGCGTCGATCGA 59.208 61.111 15.15 15.15 42.86 3.59
38 39 2.951745 GCACTCCAGCGTCGATCG 60.952 66.667 9.36 9.36 43.12 3.69
59 60 2.360949 ATCATCCGCACGCTCTCCAG 62.361 60.000 0.00 0.00 0.00 3.86
64 65 0.855349 CTTACATCATCCGCACGCTC 59.145 55.000 0.00 0.00 0.00 5.03
65 66 1.154205 GCTTACATCATCCGCACGCT 61.154 55.000 0.00 0.00 0.00 5.07
72 73 4.384940 GAGAAGAAGGGCTTACATCATCC 58.615 47.826 0.00 0.00 36.83 3.51
77 78 2.168728 GTCGGAGAAGAAGGGCTTACAT 59.831 50.000 0.00 0.00 39.69 2.29
81 82 0.836400 TGGTCGGAGAAGAAGGGCTT 60.836 55.000 0.00 0.00 39.69 4.35
82 83 1.229209 TGGTCGGAGAAGAAGGGCT 60.229 57.895 0.00 0.00 39.69 5.19
115 118 3.958147 CTCACGGCGCCCATGAAGT 62.958 63.158 23.46 9.00 0.00 3.01
179 182 1.755008 CTCCCTCACCGTCCTCTCC 60.755 68.421 0.00 0.00 0.00 3.71
234 244 7.856415 ACTGAATTCCTCTTGCTAGAATAAGT 58.144 34.615 2.27 0.00 30.21 2.24
237 247 7.124901 ACAGACTGAATTCCTCTTGCTAGAATA 59.875 37.037 10.08 0.00 30.21 1.75
238 248 6.070309 ACAGACTGAATTCCTCTTGCTAGAAT 60.070 38.462 10.08 0.00 0.00 2.40
239 249 5.247110 ACAGACTGAATTCCTCTTGCTAGAA 59.753 40.000 10.08 0.00 0.00 2.10
240 250 4.774726 ACAGACTGAATTCCTCTTGCTAGA 59.225 41.667 10.08 0.00 0.00 2.43
242 252 5.012046 TCAACAGACTGAATTCCTCTTGCTA 59.988 40.000 10.08 0.00 0.00 3.49
243 253 4.070716 CAACAGACTGAATTCCTCTTGCT 58.929 43.478 10.08 0.00 0.00 3.91
244 254 4.067896 TCAACAGACTGAATTCCTCTTGC 58.932 43.478 10.08 0.00 0.00 4.01
245 255 5.303971 ACTCAACAGACTGAATTCCTCTTG 58.696 41.667 10.08 0.66 0.00 3.02
246 256 5.559148 ACTCAACAGACTGAATTCCTCTT 57.441 39.130 10.08 0.00 0.00 2.85
249 259 5.059833 GTCAACTCAACAGACTGAATTCCT 58.940 41.667 10.08 0.00 0.00 3.36
250 260 4.816385 TGTCAACTCAACAGACTGAATTCC 59.184 41.667 10.08 0.00 33.56 3.01
253 263 4.130118 GGTGTCAACTCAACAGACTGAAT 58.870 43.478 10.08 0.00 33.56 2.57
254 264 3.055458 TGGTGTCAACTCAACAGACTGAA 60.055 43.478 10.08 0.00 33.56 3.02
255 265 2.499693 TGGTGTCAACTCAACAGACTGA 59.500 45.455 10.08 0.00 33.56 3.41
256 266 2.905075 TGGTGTCAACTCAACAGACTG 58.095 47.619 0.00 0.00 33.56 3.51
257 267 3.845781 ATGGTGTCAACTCAACAGACT 57.154 42.857 0.00 0.00 38.46 3.24
259 269 4.522114 TGAAATGGTGTCAACTCAACAGA 58.478 39.130 0.00 0.00 38.46 3.41
260 270 4.898829 TGAAATGGTGTCAACTCAACAG 57.101 40.909 0.00 0.00 38.46 3.16
261 271 4.097741 CCTTGAAATGGTGTCAACTCAACA 59.902 41.667 0.00 0.00 39.42 3.33
262 272 4.610945 CCTTGAAATGGTGTCAACTCAAC 58.389 43.478 0.00 0.00 31.78 3.18
263 273 3.068024 GCCTTGAAATGGTGTCAACTCAA 59.932 43.478 0.00 0.00 32.80 3.02
264 274 2.622942 GCCTTGAAATGGTGTCAACTCA 59.377 45.455 0.00 0.00 32.80 3.41
265 275 2.622942 TGCCTTGAAATGGTGTCAACTC 59.377 45.455 0.00 0.00 32.80 3.01
266 276 2.665165 TGCCTTGAAATGGTGTCAACT 58.335 42.857 0.00 0.00 32.80 3.16
268 278 4.502950 GGAATTGCCTTGAAATGGTGTCAA 60.503 41.667 0.00 0.00 32.80 3.18
269 279 3.006752 GGAATTGCCTTGAAATGGTGTCA 59.993 43.478 0.00 0.00 32.80 3.58
271 281 2.302733 GGGAATTGCCTTGAAATGGTGT 59.697 45.455 9.06 0.00 36.66 4.16
272 282 2.355007 GGGGAATTGCCTTGAAATGGTG 60.355 50.000 16.31 0.00 36.66 4.17
273 283 1.908619 GGGGAATTGCCTTGAAATGGT 59.091 47.619 16.31 0.00 36.66 3.55
274 284 1.907936 TGGGGAATTGCCTTGAAATGG 59.092 47.619 16.31 0.00 36.66 3.16
275 285 2.302445 TGTGGGGAATTGCCTTGAAATG 59.698 45.455 16.31 0.00 36.66 2.32
276 286 2.302733 GTGTGGGGAATTGCCTTGAAAT 59.697 45.455 16.31 0.00 36.66 2.17
277 287 1.691434 GTGTGGGGAATTGCCTTGAAA 59.309 47.619 16.31 0.00 36.66 2.69
278 288 1.337118 GTGTGGGGAATTGCCTTGAA 58.663 50.000 16.31 0.00 36.66 2.69
281 291 2.028561 ATTGTGTGGGGAATTGCCTT 57.971 45.000 16.31 0.00 36.66 4.35
282 292 2.028561 AATTGTGTGGGGAATTGCCT 57.971 45.000 16.31 0.00 36.66 4.75
283 293 3.197549 ACATAATTGTGTGGGGAATTGCC 59.802 43.478 7.61 7.61 33.85 4.52
285 295 6.284891 AGAACATAATTGTGTGGGGAATTG 57.715 37.500 8.74 0.00 35.83 2.32
286 296 6.269769 ACAAGAACATAATTGTGTGGGGAATT 59.730 34.615 8.74 0.00 38.19 2.17
287 297 5.779771 ACAAGAACATAATTGTGTGGGGAAT 59.220 36.000 8.74 0.00 38.19 3.01
289 299 4.735369 ACAAGAACATAATTGTGTGGGGA 58.265 39.130 8.74 0.00 38.19 4.81
296 306 9.337396 TGAGTTTAGACACAAGAACATAATTGT 57.663 29.630 0.00 0.00 40.18 2.71
301 311 9.337396 ACATTTGAGTTTAGACACAAGAACATA 57.663 29.630 0.00 0.00 37.59 2.29
302 312 8.225603 ACATTTGAGTTTAGACACAAGAACAT 57.774 30.769 0.00 0.00 37.59 2.71
303 313 7.624360 ACATTTGAGTTTAGACACAAGAACA 57.376 32.000 0.00 0.00 37.59 3.18
304 314 8.068380 GGTACATTTGAGTTTAGACACAAGAAC 58.932 37.037 0.00 0.00 37.59 3.01
305 315 7.771361 TGGTACATTTGAGTTTAGACACAAGAA 59.229 33.333 0.00 0.00 37.59 2.52
306 316 7.276658 TGGTACATTTGAGTTTAGACACAAGA 58.723 34.615 0.00 0.00 37.59 3.02
307 317 7.490962 TGGTACATTTGAGTTTAGACACAAG 57.509 36.000 0.00 0.00 37.59 3.16
308 318 7.554835 AGTTGGTACATTTGAGTTTAGACACAA 59.445 33.333 0.00 0.00 39.30 3.33
309 319 7.051623 AGTTGGTACATTTGAGTTTAGACACA 58.948 34.615 0.00 0.00 39.30 3.72
311 321 8.514330 AAAGTTGGTACATTTGAGTTTAGACA 57.486 30.769 0.00 0.00 39.30 3.41
317 327 9.581099 CAAAGTAAAAGTTGGTACATTTGAGTT 57.419 29.630 0.00 0.00 39.30 3.01
319 329 8.574196 CCAAAGTAAAAGTTGGTACATTTGAG 57.426 34.615 0.00 8.09 39.61 3.02
330 340 5.627780 GGCGTGATTACCAAAGTAAAAGTTG 59.372 40.000 0.00 0.00 41.68 3.16
331 341 5.561339 CGGCGTGATTACCAAAGTAAAAGTT 60.561 40.000 0.00 0.00 41.68 2.66
332 342 4.083696 CGGCGTGATTACCAAAGTAAAAGT 60.084 41.667 0.00 0.00 41.68 2.66
333 343 4.083696 ACGGCGTGATTACCAAAGTAAAAG 60.084 41.667 13.76 0.00 41.68 2.27
334 344 3.814283 ACGGCGTGATTACCAAAGTAAAA 59.186 39.130 13.76 0.00 41.68 1.52
335 345 3.401182 ACGGCGTGATTACCAAAGTAAA 58.599 40.909 13.76 0.00 41.68 2.01
337 347 2.747396 ACGGCGTGATTACCAAAGTA 57.253 45.000 13.76 0.00 0.00 2.24
338 348 1.802365 GAACGGCGTGATTACCAAAGT 59.198 47.619 15.70 0.00 0.00 2.66
339 349 2.073816 AGAACGGCGTGATTACCAAAG 58.926 47.619 15.70 0.00 0.00 2.77
344 354 4.284378 AGTAGTAGAACGGCGTGATTAC 57.716 45.455 15.70 16.10 0.00 1.89
345 355 4.970662 AAGTAGTAGAACGGCGTGATTA 57.029 40.909 15.70 3.59 0.00 1.75
346 356 3.863142 AAGTAGTAGAACGGCGTGATT 57.137 42.857 15.70 4.71 0.00 2.57
347 357 3.057033 ACAAAGTAGTAGAACGGCGTGAT 60.057 43.478 15.70 8.04 0.00 3.06
348 358 2.294233 ACAAAGTAGTAGAACGGCGTGA 59.706 45.455 15.70 0.00 0.00 4.35
351 361 4.726416 TCTTACAAAGTAGTAGAACGGCG 58.274 43.478 4.80 4.80 0.00 6.46
352 362 8.186821 TCTTATCTTACAAAGTAGTAGAACGGC 58.813 37.037 0.00 0.00 0.00 5.68
353 363 9.719279 CTCTTATCTTACAAAGTAGTAGAACGG 57.281 37.037 0.00 0.00 0.00 4.44
373 383 7.499232 CCGGTCATACTTGAATTTTCCTCTTAT 59.501 37.037 0.00 0.00 32.48 1.73
374 384 6.821665 CCGGTCATACTTGAATTTTCCTCTTA 59.178 38.462 0.00 0.00 32.48 2.10
375 385 5.648092 CCGGTCATACTTGAATTTTCCTCTT 59.352 40.000 0.00 0.00 32.48 2.85
376 386 5.186198 CCGGTCATACTTGAATTTTCCTCT 58.814 41.667 0.00 0.00 32.48 3.69
377 387 4.941873 ACCGGTCATACTTGAATTTTCCTC 59.058 41.667 0.00 0.00 32.48 3.71
378 388 4.918588 ACCGGTCATACTTGAATTTTCCT 58.081 39.130 0.00 0.00 32.48 3.36
379 389 5.638596 AACCGGTCATACTTGAATTTTCC 57.361 39.130 8.04 0.00 32.48 3.13
380 390 7.813645 ACTTAACCGGTCATACTTGAATTTTC 58.186 34.615 8.04 0.00 32.48 2.29
381 391 7.754851 ACTTAACCGGTCATACTTGAATTTT 57.245 32.000 8.04 0.00 32.48 1.82
382 392 7.063780 CGTACTTAACCGGTCATACTTGAATTT 59.936 37.037 8.04 0.00 32.48 1.82
384 394 6.038356 CGTACTTAACCGGTCATACTTGAAT 58.962 40.000 8.04 0.00 32.48 2.57
386 396 4.458989 ACGTACTTAACCGGTCATACTTGA 59.541 41.667 8.04 0.00 0.00 3.02
389 399 3.758554 ACACGTACTTAACCGGTCATACT 59.241 43.478 8.04 0.00 0.00 2.12
392 402 3.758554 AGTACACGTACTTAACCGGTCAT 59.241 43.478 8.04 0.00 43.35 3.06
393 403 3.146066 AGTACACGTACTTAACCGGTCA 58.854 45.455 8.04 0.00 43.35 4.02
394 404 3.831715 AGTACACGTACTTAACCGGTC 57.168 47.619 8.04 0.00 43.35 4.79
404 414 4.164822 TGCTGAACCTAAGTACACGTAC 57.835 45.455 0.00 0.00 36.35 3.67
407 417 5.408356 ACTTATGCTGAACCTAAGTACACG 58.592 41.667 0.00 0.00 34.73 4.49
415 425 9.817809 CAGAAACTTATACTTATGCTGAACCTA 57.182 33.333 0.00 0.00 0.00 3.08
418 428 8.202745 AGCAGAAACTTATACTTATGCTGAAC 57.797 34.615 8.83 0.00 45.65 3.18
419 429 8.792830 AAGCAGAAACTTATACTTATGCTGAA 57.207 30.769 9.91 0.00 46.42 3.02
420 430 8.668353 CAAAGCAGAAACTTATACTTATGCTGA 58.332 33.333 9.91 0.00 46.42 4.26
421 431 8.668353 TCAAAGCAGAAACTTATACTTATGCTG 58.332 33.333 9.91 0.00 46.42 4.41
423 433 9.495754 CTTCAAAGCAGAAACTTATACTTATGC 57.504 33.333 0.00 0.00 39.48 3.14
426 436 8.936864 GCTCTTCAAAGCAGAAACTTATACTTA 58.063 33.333 0.00 0.00 42.05 2.24
427 437 7.094592 GGCTCTTCAAAGCAGAAACTTATACTT 60.095 37.037 0.00 0.00 44.35 2.24
442 920 1.331214 TGCAAAGGGGCTCTTCAAAG 58.669 50.000 0.00 0.00 33.94 2.77
470 953 2.738846 CGATCTTGGTTGTCACCTTCTG 59.261 50.000 0.00 0.00 44.61 3.02
529 1021 1.850640 CGCGTTACGTTGTTCTGCT 59.149 52.632 6.63 0.00 36.87 4.24
530 1022 1.787056 GCGCGTTACGTTGTTCTGC 60.787 57.895 8.43 0.00 46.11 4.26
531 1023 1.154727 GGCGCGTTACGTTGTTCTG 60.155 57.895 8.43 0.00 46.11 3.02
532 1024 2.651137 CGGCGCGTTACGTTGTTCT 61.651 57.895 8.43 0.00 46.11 3.01
533 1025 2.201959 CGGCGCGTTACGTTGTTC 60.202 61.111 8.43 0.00 46.11 3.18
534 1026 2.657944 TCGGCGCGTTACGTTGTT 60.658 55.556 8.43 0.00 46.11 2.83
563 1066 1.741770 CTCTCCGGTTTTGCTCCCG 60.742 63.158 0.00 0.00 43.82 5.14
677 1268 0.249238 CCTGCGCATCCTCTGTAGTC 60.249 60.000 12.24 0.00 0.00 2.59
679 1270 1.593750 GCCTGCGCATCCTCTGTAG 60.594 63.158 12.24 0.00 34.03 2.74
680 1271 2.501128 GCCTGCGCATCCTCTGTA 59.499 61.111 12.24 0.00 34.03 2.74
681 1272 4.479993 GGCCTGCGCATCCTCTGT 62.480 66.667 12.24 0.00 36.38 3.41
682 1273 4.172512 AGGCCTGCGCATCCTCTG 62.173 66.667 21.46 5.39 36.38 3.35
683 1274 3.859414 GAGGCCTGCGCATCCTCT 61.859 66.667 33.82 21.04 39.93 3.69
718 1309 2.264480 CGTCGAATCACCAGGCCA 59.736 61.111 5.01 0.00 0.00 5.36
720 1311 1.810030 GGACGTCGAATCACCAGGC 60.810 63.158 9.92 0.00 0.00 4.85
743 1407 2.094659 GCACAGTCGGACACGGATG 61.095 63.158 11.27 1.85 41.39 3.51
928 1633 1.008424 CCCGAGGATCACGATCACG 60.008 63.158 9.17 12.31 45.75 4.35
1031 2326 2.156496 AACGAGCAGGAGGAGGAGGA 62.156 60.000 0.00 0.00 0.00 3.71
1032 2327 1.671901 GAACGAGCAGGAGGAGGAGG 61.672 65.000 0.00 0.00 0.00 4.30
1033 2328 0.682855 AGAACGAGCAGGAGGAGGAG 60.683 60.000 0.00 0.00 0.00 3.69
1322 2811 8.715190 ACCTTTTTAGGGTAACATTACAACAT 57.285 30.769 4.27 0.00 35.00 2.71
1324 2813 9.288576 AGTACCTTTTTAGGGTAACATTACAAC 57.711 33.333 4.27 0.00 40.47 3.32
1325 2814 9.506018 GAGTACCTTTTTAGGGTAACATTACAA 57.494 33.333 4.27 0.00 40.47 2.41
1553 3055 0.904865 AAGGATGGAGACCTCGTGCA 60.905 55.000 0.00 0.00 36.67 4.57
1564 3066 1.000521 CCTGCTTGGCAAGGATGGA 60.001 57.895 27.25 3.81 38.41 3.41
1649 3151 2.048222 CGAAGAAGGCCACGAGCA 60.048 61.111 5.01 0.00 46.50 4.26
1707 3234 3.973206 ACGATACTCACATTGTTGGGA 57.027 42.857 0.00 0.00 33.16 4.37
1726 3253 7.738345 TGCATATATACATTGTGCGTTGATAC 58.262 34.615 0.00 0.00 38.58 2.24
1992 3526 8.746052 TTTTTCAGATTATCGTTATGGATGGT 57.254 30.769 0.00 0.00 0.00 3.55
2105 3642 6.170506 AGACATTTTTGAATGCATGCAGAAT 58.829 32.000 26.69 14.60 33.57 2.40
2106 3643 5.543714 AGACATTTTTGAATGCATGCAGAA 58.456 33.333 26.69 15.17 33.57 3.02
2107 3644 5.142061 AGACATTTTTGAATGCATGCAGA 57.858 34.783 26.69 9.63 33.57 4.26
2108 3645 4.926832 TGAGACATTTTTGAATGCATGCAG 59.073 37.500 26.69 11.22 33.57 4.41
2109 3646 4.884247 TGAGACATTTTTGAATGCATGCA 58.116 34.783 25.04 25.04 33.57 3.96
2110 3647 6.417191 AATGAGACATTTTTGAATGCATGC 57.583 33.333 11.82 11.82 33.57 4.06
2217 3755 7.290248 AGCTCTGAGCCTTTACCTACATTAATA 59.710 37.037 25.09 0.00 43.77 0.98
2298 3837 3.466881 TGCTGTCCGCAGTAACCT 58.533 55.556 0.00 0.00 45.47 3.50
2329 3868 2.882761 ACACAGTGTACAGTAGCTTCGA 59.117 45.455 3.69 0.00 0.00 3.71
2332 3871 2.755650 GCACACAGTGTACAGTAGCTT 58.244 47.619 5.69 0.00 35.75 3.74
2408 3947 2.957402 TTGTTTCATGACAGCCTCCT 57.043 45.000 0.00 0.00 0.00 3.69
2439 3978 5.461526 GCTTGATTTACAAACTCCCTCAAC 58.538 41.667 0.00 0.00 38.08 3.18
2663 4272 8.967918 ACTCAGTTTGTATAGCTAGAACACATA 58.032 33.333 10.42 0.56 0.00 2.29
2707 4323 7.177216 TGGAATTGCCTTGAGCTTATATATTGG 59.823 37.037 0.00 0.00 44.23 3.16
2710 4326 9.401058 GTATGGAATTGCCTTGAGCTTATATAT 57.599 33.333 0.00 0.00 44.23 0.86
2711 4327 7.829211 GGTATGGAATTGCCTTGAGCTTATATA 59.171 37.037 0.00 0.00 44.23 0.86
2712 4328 6.660949 GGTATGGAATTGCCTTGAGCTTATAT 59.339 38.462 0.00 0.00 44.23 0.86
2713 4329 6.003950 GGTATGGAATTGCCTTGAGCTTATA 58.996 40.000 0.00 0.00 44.23 0.98
2762 4383 1.597797 CGCCAACCCGGTAGACTACA 61.598 60.000 14.48 0.00 36.97 2.74
2777 4398 2.297315 CTGTCATCTATAGAAGGCGCCA 59.703 50.000 31.54 8.23 0.00 5.69
2782 4403 2.353208 GGCGCCTGTCATCTATAGAAGG 60.353 54.545 22.15 9.97 0.00 3.46
2789 4410 0.175760 GACAAGGCGCCTGTCATCTA 59.824 55.000 34.55 0.00 33.20 1.98
2790 4411 1.078848 GACAAGGCGCCTGTCATCT 60.079 57.895 34.55 19.11 33.20 2.90
2800 4421 0.512952 CCGAGTTCAAAGACAAGGCG 59.487 55.000 0.00 0.00 0.00 5.52
2841 4462 9.747898 GATACCCACAAATACCCATATTCATAA 57.252 33.333 0.00 0.00 30.27 1.90
2877 5204 0.532640 TGAGCACTGCACACGAACAT 60.533 50.000 3.30 0.00 0.00 2.71
2909 6134 4.877251 GCCATGTTTTTATACCCACGACTA 59.123 41.667 0.00 0.00 0.00 2.59
2911 6136 3.440872 TGCCATGTTTTTATACCCACGAC 59.559 43.478 0.00 0.00 0.00 4.34
2914 6139 7.068226 AGAGTTATGCCATGTTTTTATACCCAC 59.932 37.037 0.00 0.00 0.00 4.61
2921 6146 7.442969 CGGGTATAGAGTTATGCCATGTTTTTA 59.557 37.037 4.47 0.00 42.12 1.52
2926 6151 3.901844 ACGGGTATAGAGTTATGCCATGT 59.098 43.478 4.47 0.35 42.12 3.21
2929 6154 2.036733 GCACGGGTATAGAGTTATGCCA 59.963 50.000 4.47 0.00 42.12 4.92
2969 6194 7.105241 AGAAAAAGCTATCAACCCATCAATC 57.895 36.000 0.00 0.00 0.00 2.67
2970 6195 7.486407 AAGAAAAAGCTATCAACCCATCAAT 57.514 32.000 0.00 0.00 0.00 2.57
2974 6199 5.253330 TCGAAGAAAAAGCTATCAACCCAT 58.747 37.500 0.00 0.00 0.00 4.00
2975 6200 4.647611 TCGAAGAAAAAGCTATCAACCCA 58.352 39.130 0.00 0.00 0.00 4.51
2980 6206 6.402118 CGGATTGTTCGAAGAAAAAGCTATCA 60.402 38.462 12.11 0.00 45.90 2.15
2981 6207 5.960105 CGGATTGTTCGAAGAAAAAGCTATC 59.040 40.000 12.11 3.18 45.90 2.08
3041 6269 6.818142 AGTGAACTTTGGATGTTTGGAAAAAG 59.182 34.615 0.00 0.00 0.00 2.27
3047 6275 5.508994 GGGTTAGTGAACTTTGGATGTTTGG 60.509 44.000 0.00 0.00 35.74 3.28
3087 6321 1.812922 GTGACATCCAGCCTCAGCG 60.813 63.158 0.00 0.00 46.67 5.18
3089 6323 1.153489 CGGTGACATCCAGCCTCAG 60.153 63.158 0.00 0.00 40.02 3.35
3120 6354 1.350193 CTGTTCCAACTCGGATGACG 58.650 55.000 0.00 0.00 45.80 4.35
3124 6358 0.108615 CGAGCTGTTCCAACTCGGAT 60.109 55.000 8.70 0.00 45.80 4.18
3145 6380 1.227497 GAGCTCCCTGATGAAGCGG 60.227 63.158 0.87 0.00 0.00 5.52
3178 6413 2.441750 AGTAACCTTGGGCTTCAGACAA 59.558 45.455 0.00 0.00 0.00 3.18
3187 6422 2.861147 AGTCTTCAGTAACCTTGGGC 57.139 50.000 0.00 0.00 0.00 5.36
3190 6425 4.883083 TGTGCTAGTCTTCAGTAACCTTG 58.117 43.478 0.00 0.00 0.00 3.61
3192 6427 3.511934 CCTGTGCTAGTCTTCAGTAACCT 59.488 47.826 0.00 0.00 0.00 3.50
3266 6501 3.502211 AGAAAAACATGATCGGTCCACAC 59.498 43.478 0.00 0.00 0.00 3.82
3269 6504 4.002982 CTGAGAAAAACATGATCGGTCCA 58.997 43.478 0.00 0.00 0.00 4.02
3298 6533 0.863799 ATGTTGATCGCGCTGCATAG 59.136 50.000 5.56 0.00 0.00 2.23
3315 6550 4.421058 CATCTCCACAAGTGAATTGCATG 58.579 43.478 0.94 0.00 43.15 4.06
3330 6571 4.564782 ACTCTTTGATGAAGCATCTCCA 57.435 40.909 8.66 0.00 41.06 3.86
3364 6731 6.391227 AAAGAAGGCGAGATTTCTCAAAAA 57.609 33.333 8.23 0.00 43.00 1.94
3370 6737 3.935828 GCAGTAAAGAAGGCGAGATTTCT 59.064 43.478 0.00 0.00 35.25 2.52
3374 6741 2.497675 TGAGCAGTAAAGAAGGCGAGAT 59.502 45.455 0.00 0.00 0.00 2.75
3375 6742 1.893137 TGAGCAGTAAAGAAGGCGAGA 59.107 47.619 0.00 0.00 0.00 4.04
3376 6743 2.370281 TGAGCAGTAAAGAAGGCGAG 57.630 50.000 0.00 0.00 0.00 5.03
3377 6744 2.831685 TTGAGCAGTAAAGAAGGCGA 57.168 45.000 0.00 0.00 0.00 5.54
3378 6745 5.741388 ATTATTGAGCAGTAAAGAAGGCG 57.259 39.130 0.00 0.00 0.00 5.52
3379 6746 9.508567 CTTTAATTATTGAGCAGTAAAGAAGGC 57.491 33.333 0.00 0.00 32.70 4.35
3401 6768 8.739039 CCTCATGACCAAAACATTGTATCTTTA 58.261 33.333 0.00 0.00 0.00 1.85
3402 6769 7.451255 TCCTCATGACCAAAACATTGTATCTTT 59.549 33.333 0.00 0.00 0.00 2.52
3403 6770 6.947733 TCCTCATGACCAAAACATTGTATCTT 59.052 34.615 0.00 0.00 0.00 2.40
3404 6771 6.484288 TCCTCATGACCAAAACATTGTATCT 58.516 36.000 0.00 0.00 0.00 1.98
3405 6772 6.599244 TCTCCTCATGACCAAAACATTGTATC 59.401 38.462 0.00 0.00 0.00 2.24
3406 6773 6.375455 GTCTCCTCATGACCAAAACATTGTAT 59.625 38.462 0.00 0.00 0.00 2.29
3407 6774 5.705441 GTCTCCTCATGACCAAAACATTGTA 59.295 40.000 0.00 0.00 0.00 2.41
3408 6775 4.520492 GTCTCCTCATGACCAAAACATTGT 59.480 41.667 0.00 0.00 0.00 2.71
3409 6776 5.051891 GTCTCCTCATGACCAAAACATTG 57.948 43.478 0.00 0.00 0.00 2.82
3419 6786 1.280457 AGTTGGGGTCTCCTCATGAC 58.720 55.000 0.00 0.00 36.20 3.06
3420 6787 2.940514 TAGTTGGGGTCTCCTCATGA 57.059 50.000 0.00 0.00 36.20 3.07
3421 6788 3.009033 TGTTTAGTTGGGGTCTCCTCATG 59.991 47.826 0.00 0.00 36.20 3.07
3422 6789 3.256704 TGTTTAGTTGGGGTCTCCTCAT 58.743 45.455 0.00 0.00 36.20 2.90
3423 6790 2.696775 TGTTTAGTTGGGGTCTCCTCA 58.303 47.619 0.00 0.00 36.20 3.86
3424 6791 3.263425 TCATGTTTAGTTGGGGTCTCCTC 59.737 47.826 0.00 0.00 36.20 3.71
3425 6792 3.009143 GTCATGTTTAGTTGGGGTCTCCT 59.991 47.826 0.00 0.00 36.20 3.69
3426 6793 3.344515 GTCATGTTTAGTTGGGGTCTCC 58.655 50.000 0.00 0.00 0.00 3.71
3427 6794 3.000727 CGTCATGTTTAGTTGGGGTCTC 58.999 50.000 0.00 0.00 0.00 3.36
3428 6795 2.635915 TCGTCATGTTTAGTTGGGGTCT 59.364 45.455 0.00 0.00 0.00 3.85
3429 6796 2.740447 GTCGTCATGTTTAGTTGGGGTC 59.260 50.000 0.00 0.00 0.00 4.46
3430 6797 2.551504 GGTCGTCATGTTTAGTTGGGGT 60.552 50.000 0.00 0.00 0.00 4.95
3431 6798 2.081462 GGTCGTCATGTTTAGTTGGGG 58.919 52.381 0.00 0.00 0.00 4.96
3432 6799 3.053831 AGGTCGTCATGTTTAGTTGGG 57.946 47.619 0.00 0.00 0.00 4.12
3433 6800 5.751990 GGTATAGGTCGTCATGTTTAGTTGG 59.248 44.000 0.00 0.00 0.00 3.77
3434 6801 6.570692 AGGTATAGGTCGTCATGTTTAGTTG 58.429 40.000 0.00 0.00 0.00 3.16
3435 6802 6.786967 AGGTATAGGTCGTCATGTTTAGTT 57.213 37.500 0.00 0.00 0.00 2.24
3436 6803 7.886629 TTAGGTATAGGTCGTCATGTTTAGT 57.113 36.000 0.00 0.00 0.00 2.24
3437 6804 9.760077 AATTTAGGTATAGGTCGTCATGTTTAG 57.240 33.333 0.00 0.00 0.00 1.85
3439 6806 9.538508 GTAATTTAGGTATAGGTCGTCATGTTT 57.461 33.333 0.00 0.00 0.00 2.83
3440 6807 8.698210 TGTAATTTAGGTATAGGTCGTCATGTT 58.302 33.333 0.00 0.00 0.00 2.71
3441 6808 8.241497 TGTAATTTAGGTATAGGTCGTCATGT 57.759 34.615 0.00 0.00 0.00 3.21
3442 6809 8.975439 GTTGTAATTTAGGTATAGGTCGTCATG 58.025 37.037 0.00 0.00 0.00 3.07
3443 6810 8.146412 GGTTGTAATTTAGGTATAGGTCGTCAT 58.854 37.037 0.00 0.00 0.00 3.06
3444 6811 7.123997 TGGTTGTAATTTAGGTATAGGTCGTCA 59.876 37.037 0.00 0.00 0.00 4.35
3445 6812 7.491682 TGGTTGTAATTTAGGTATAGGTCGTC 58.508 38.462 0.00 0.00 0.00 4.20
3446 6813 7.422465 TGGTTGTAATTTAGGTATAGGTCGT 57.578 36.000 0.00 0.00 0.00 4.34
3447 6814 8.606602 GTTTGGTTGTAATTTAGGTATAGGTCG 58.393 37.037 0.00 0.00 0.00 4.79
3448 6815 9.676861 AGTTTGGTTGTAATTTAGGTATAGGTC 57.323 33.333 0.00 0.00 0.00 3.85
3453 6820 8.508875 CGTCAAGTTTGGTTGTAATTTAGGTAT 58.491 33.333 0.00 0.00 0.00 2.73
3454 6821 7.714377 TCGTCAAGTTTGGTTGTAATTTAGGTA 59.286 33.333 0.00 0.00 0.00 3.08
3455 6822 6.543100 TCGTCAAGTTTGGTTGTAATTTAGGT 59.457 34.615 0.00 0.00 0.00 3.08
3456 6823 6.961576 TCGTCAAGTTTGGTTGTAATTTAGG 58.038 36.000 0.00 0.00 0.00 2.69
3457 6824 7.857569 TCTCGTCAAGTTTGGTTGTAATTTAG 58.142 34.615 0.00 0.00 0.00 1.85
3458 6825 7.789273 TCTCGTCAAGTTTGGTTGTAATTTA 57.211 32.000 0.00 0.00 0.00 1.40
3459 6826 6.687081 TCTCGTCAAGTTTGGTTGTAATTT 57.313 33.333 0.00 0.00 0.00 1.82
3460 6827 6.877611 ATCTCGTCAAGTTTGGTTGTAATT 57.122 33.333 0.00 0.00 0.00 1.40
3461 6828 6.877611 AATCTCGTCAAGTTTGGTTGTAAT 57.122 33.333 0.00 0.00 0.00 1.89
3462 6829 7.572353 GCATAATCTCGTCAAGTTTGGTTGTAA 60.572 37.037 0.00 0.00 0.00 2.41
3463 6830 6.128391 GCATAATCTCGTCAAGTTTGGTTGTA 60.128 38.462 0.00 0.00 0.00 2.41
3464 6831 5.334879 GCATAATCTCGTCAAGTTTGGTTGT 60.335 40.000 0.00 0.00 0.00 3.32
3465 6832 5.088739 GCATAATCTCGTCAAGTTTGGTTG 58.911 41.667 0.00 0.00 0.00 3.77
3466 6833 4.142902 CGCATAATCTCGTCAAGTTTGGTT 60.143 41.667 0.00 0.00 0.00 3.67
3467 6834 3.370978 CGCATAATCTCGTCAAGTTTGGT 59.629 43.478 0.00 0.00 0.00 3.67
3468 6835 3.785505 GCGCATAATCTCGTCAAGTTTGG 60.786 47.826 0.30 0.00 0.00 3.28
3469 6836 3.062639 AGCGCATAATCTCGTCAAGTTTG 59.937 43.478 11.47 0.00 0.00 2.93
3470 6837 3.262420 AGCGCATAATCTCGTCAAGTTT 58.738 40.909 11.47 0.00 0.00 2.66
3471 6838 2.893637 AGCGCATAATCTCGTCAAGTT 58.106 42.857 11.47 0.00 0.00 2.66
3472 6839 2.586258 AGCGCATAATCTCGTCAAGT 57.414 45.000 11.47 0.00 0.00 3.16
3473 6840 2.097685 CGAAGCGCATAATCTCGTCAAG 60.098 50.000 11.47 0.00 0.00 3.02
3474 6841 1.852280 CGAAGCGCATAATCTCGTCAA 59.148 47.619 11.47 0.00 0.00 3.18
3475 6842 1.064952 TCGAAGCGCATAATCTCGTCA 59.935 47.619 11.47 0.00 0.00 4.35
3476 6843 1.755161 TCGAAGCGCATAATCTCGTC 58.245 50.000 11.47 0.00 0.00 4.20
3477 6844 2.203800 TTCGAAGCGCATAATCTCGT 57.796 45.000 11.47 0.00 0.00 4.18
3478 6845 3.777807 ATTTCGAAGCGCATAATCTCG 57.222 42.857 11.47 7.89 0.00 4.04
3479 6846 7.892445 TTTTAATTTCGAAGCGCATAATCTC 57.108 32.000 11.47 0.00 0.00 2.75
3480 6847 7.968405 ACTTTTTAATTTCGAAGCGCATAATCT 59.032 29.630 11.47 0.00 0.00 2.40
3481 6848 8.104222 ACTTTTTAATTTCGAAGCGCATAATC 57.896 30.769 11.47 0.82 0.00 1.75
3482 6849 7.968405 AGACTTTTTAATTTCGAAGCGCATAAT 59.032 29.630 11.47 0.00 0.00 1.28
3483 6850 7.302524 AGACTTTTTAATTTCGAAGCGCATAA 58.697 30.769 11.47 0.00 0.00 1.90
3484 6851 6.837992 AGACTTTTTAATTTCGAAGCGCATA 58.162 32.000 11.47 0.00 0.00 3.14
3485 6852 5.699839 AGACTTTTTAATTTCGAAGCGCAT 58.300 33.333 11.47 0.00 0.00 4.73
3486 6853 5.103290 AGACTTTTTAATTTCGAAGCGCA 57.897 34.783 11.47 0.00 0.00 6.09
3487 6854 5.222488 CGTAGACTTTTTAATTTCGAAGCGC 59.778 40.000 0.00 0.00 0.00 5.92
3488 6855 6.294363 ACGTAGACTTTTTAATTTCGAAGCG 58.706 36.000 0.00 0.00 0.00 4.68
3489 6856 7.795272 TGAACGTAGACTTTTTAATTTCGAAGC 59.205 33.333 0.00 0.00 0.00 3.86
3490 6857 9.807386 ATGAACGTAGACTTTTTAATTTCGAAG 57.193 29.630 0.00 0.00 0.00 3.79
3491 6858 9.588774 CATGAACGTAGACTTTTTAATTTCGAA 57.411 29.630 0.00 0.00 0.00 3.71
3492 6859 8.980610 TCATGAACGTAGACTTTTTAATTTCGA 58.019 29.630 0.00 0.00 0.00 3.71
3493 6860 9.250986 CTCATGAACGTAGACTTTTTAATTTCG 57.749 33.333 0.00 0.00 0.00 3.46
3495 6862 9.878599 CACTCATGAACGTAGACTTTTTAATTT 57.121 29.630 0.00 0.00 0.00 1.82
3496 6863 9.268268 TCACTCATGAACGTAGACTTTTTAATT 57.732 29.630 0.00 0.00 0.00 1.40
3497 6864 8.827177 TCACTCATGAACGTAGACTTTTTAAT 57.173 30.769 0.00 0.00 0.00 1.40
3498 6865 8.651391 TTCACTCATGAACGTAGACTTTTTAA 57.349 30.769 0.00 0.00 40.01 1.52
3499 6866 8.651391 TTTCACTCATGAACGTAGACTTTTTA 57.349 30.769 0.00 0.00 44.66 1.52
3500 6867 7.280205 ACTTTCACTCATGAACGTAGACTTTTT 59.720 33.333 0.00 0.00 43.45 1.94
3501 6868 6.761714 ACTTTCACTCATGAACGTAGACTTTT 59.238 34.615 0.00 0.00 43.45 2.27
3502 6869 6.281405 ACTTTCACTCATGAACGTAGACTTT 58.719 36.000 0.00 0.00 43.45 2.66
3503 6870 5.844004 ACTTTCACTCATGAACGTAGACTT 58.156 37.500 0.00 0.00 43.45 3.01
3504 6871 5.455056 ACTTTCACTCATGAACGTAGACT 57.545 39.130 0.00 0.00 43.45 3.24
3505 6872 6.147581 TGTACTTTCACTCATGAACGTAGAC 58.852 40.000 6.62 1.35 45.23 2.59
3506 6873 6.321848 TGTACTTTCACTCATGAACGTAGA 57.678 37.500 6.62 3.81 45.23 2.59
3507 6874 6.806739 TCATGTACTTTCACTCATGAACGTAG 59.193 38.462 6.62 0.00 45.23 3.51
3508 6875 6.683715 TCATGTACTTTCACTCATGAACGTA 58.316 36.000 0.00 3.13 43.45 3.57
3509 6876 5.538118 TCATGTACTTTCACTCATGAACGT 58.462 37.500 0.00 4.81 46.08 3.99
3510 6877 6.466308 TTCATGTACTTTCACTCATGAACG 57.534 37.500 13.10 0.00 45.79 3.95
3513 6880 8.797350 ATGATTTCATGTACTTTCACTCATGA 57.203 30.769 0.00 0.00 42.83 3.07
3516 6883 9.889128 TGATATGATTTCATGTACTTTCACTCA 57.111 29.630 3.30 0.00 37.15 3.41
3544 6911 9.253832 TCATCCAGGAAATAATTGCTAGAAAAA 57.746 29.630 0.00 0.00 34.65 1.94
3545 6912 8.821686 TCATCCAGGAAATAATTGCTAGAAAA 57.178 30.769 0.00 0.00 34.65 2.29
3546 6913 8.853126 CATCATCCAGGAAATAATTGCTAGAAA 58.147 33.333 0.00 0.00 34.65 2.52
3547 6914 7.449395 CCATCATCCAGGAAATAATTGCTAGAA 59.551 37.037 0.00 0.00 34.65 2.10
3548 6915 6.944290 CCATCATCCAGGAAATAATTGCTAGA 59.056 38.462 0.00 0.00 34.65 2.43
3549 6916 6.349944 GCCATCATCCAGGAAATAATTGCTAG 60.350 42.308 0.00 0.00 34.65 3.42
3550 6917 5.477984 GCCATCATCCAGGAAATAATTGCTA 59.522 40.000 0.00 0.00 34.65 3.49
3551 6918 4.282703 GCCATCATCCAGGAAATAATTGCT 59.717 41.667 0.00 0.00 37.77 3.91
3552 6919 4.039488 TGCCATCATCCAGGAAATAATTGC 59.961 41.667 0.00 0.00 0.00 3.56
3553 6920 5.510179 GGTGCCATCATCCAGGAAATAATTG 60.510 44.000 0.00 0.00 0.00 2.32
3554 6921 4.590222 GGTGCCATCATCCAGGAAATAATT 59.410 41.667 0.00 0.00 0.00 1.40
3555 6922 4.154942 GGTGCCATCATCCAGGAAATAAT 58.845 43.478 0.00 0.00 0.00 1.28
3556 6923 3.053019 TGGTGCCATCATCCAGGAAATAA 60.053 43.478 0.00 0.00 0.00 1.40
3557 6924 2.513317 TGGTGCCATCATCCAGGAAATA 59.487 45.455 0.00 0.00 0.00 1.40
3558 6925 1.288633 TGGTGCCATCATCCAGGAAAT 59.711 47.619 0.00 0.00 0.00 2.17
3559 6926 0.703488 TGGTGCCATCATCCAGGAAA 59.297 50.000 0.00 0.00 0.00 3.13
3560 6927 0.928505 ATGGTGCCATCATCCAGGAA 59.071 50.000 0.00 0.00 34.62 3.36
3561 6928 0.184211 CATGGTGCCATCATCCAGGA 59.816 55.000 0.00 0.00 35.42 3.86
3562 6929 0.184211 TCATGGTGCCATCATCCAGG 59.816 55.000 0.00 0.00 33.90 4.45
3563 6930 2.287977 ATCATGGTGCCATCATCCAG 57.712 50.000 0.00 0.00 33.90 3.86
3564 6931 3.308617 GGATATCATGGTGCCATCATCCA 60.309 47.826 20.36 0.00 36.87 3.41
3565 6932 3.053842 AGGATATCATGGTGCCATCATCC 60.054 47.826 18.92 18.92 37.00 3.51
3566 6933 4.197750 GAGGATATCATGGTGCCATCATC 58.802 47.826 4.83 4.94 33.90 2.92
3567 6934 3.053842 GGAGGATATCATGGTGCCATCAT 60.054 47.826 4.83 0.00 33.90 2.45
3568 6935 2.306805 GGAGGATATCATGGTGCCATCA 59.693 50.000 4.83 0.00 33.90 3.07
3569 6936 2.356535 GGGAGGATATCATGGTGCCATC 60.357 54.545 4.83 0.00 33.90 3.51
3570 6937 1.637553 GGGAGGATATCATGGTGCCAT 59.362 52.381 4.83 0.00 37.08 4.40
3571 6938 1.067295 GGGAGGATATCATGGTGCCA 58.933 55.000 4.83 0.00 0.00 4.92
3572 6939 0.036010 CGGGAGGATATCATGGTGCC 60.036 60.000 4.83 0.03 0.00 5.01
3573 6940 0.976641 TCGGGAGGATATCATGGTGC 59.023 55.000 4.83 0.00 0.00 5.01
3574 6941 1.276421 GGTCGGGAGGATATCATGGTG 59.724 57.143 4.83 0.00 0.00 4.17
3575 6942 1.645710 GGTCGGGAGGATATCATGGT 58.354 55.000 4.83 0.00 0.00 3.55
3576 6943 0.905357 GGGTCGGGAGGATATCATGG 59.095 60.000 4.83 0.00 0.00 3.66
3577 6944 1.944177 AGGGTCGGGAGGATATCATG 58.056 55.000 4.83 0.00 0.00 3.07
3578 6945 2.260822 CAAGGGTCGGGAGGATATCAT 58.739 52.381 4.83 0.00 0.00 2.45
3579 6946 1.717032 CAAGGGTCGGGAGGATATCA 58.283 55.000 4.83 0.00 0.00 2.15
3580 6947 0.321996 GCAAGGGTCGGGAGGATATC 59.678 60.000 0.00 0.00 0.00 1.63
3581 6948 0.104934 AGCAAGGGTCGGGAGGATAT 60.105 55.000 0.00 0.00 0.00 1.63
3582 6949 0.326238 AAGCAAGGGTCGGGAGGATA 60.326 55.000 0.00 0.00 0.00 2.59
3583 6950 0.326238 TAAGCAAGGGTCGGGAGGAT 60.326 55.000 0.00 0.00 0.00 3.24
3584 6951 0.545787 TTAAGCAAGGGTCGGGAGGA 60.546 55.000 0.00 0.00 0.00 3.71
3585 6952 0.546598 ATTAAGCAAGGGTCGGGAGG 59.453 55.000 0.00 0.00 0.00 4.30
3586 6953 1.065418 ACATTAAGCAAGGGTCGGGAG 60.065 52.381 0.00 0.00 0.00 4.30
3587 6954 0.988832 ACATTAAGCAAGGGTCGGGA 59.011 50.000 0.00 0.00 0.00 5.14
3588 6955 1.743394 GAACATTAAGCAAGGGTCGGG 59.257 52.381 0.00 0.00 0.00 5.14
3589 6956 2.711542 AGAACATTAAGCAAGGGTCGG 58.288 47.619 0.00 0.00 37.24 4.79
3590 6957 3.751175 TGAAGAACATTAAGCAAGGGTCG 59.249 43.478 0.00 0.00 37.24 4.79
3591 6958 4.082733 GGTGAAGAACATTAAGCAAGGGTC 60.083 45.833 0.00 0.00 32.24 4.46
3592 6959 3.826729 GGTGAAGAACATTAAGCAAGGGT 59.173 43.478 0.00 0.00 0.00 4.34
3593 6960 3.826157 TGGTGAAGAACATTAAGCAAGGG 59.174 43.478 0.00 0.00 0.00 3.95
3594 6961 4.520492 AGTGGTGAAGAACATTAAGCAAGG 59.480 41.667 0.00 0.00 0.00 3.61
3595 6962 5.695851 AGTGGTGAAGAACATTAAGCAAG 57.304 39.130 0.00 0.00 0.00 4.01
3596 6963 5.009610 GGAAGTGGTGAAGAACATTAAGCAA 59.990 40.000 0.00 0.00 0.00 3.91
3597 6964 4.518970 GGAAGTGGTGAAGAACATTAAGCA 59.481 41.667 0.00 0.00 0.00 3.91
3598 6965 4.762251 AGGAAGTGGTGAAGAACATTAAGC 59.238 41.667 0.00 0.00 0.00 3.09
3599 6966 5.997746 TGAGGAAGTGGTGAAGAACATTAAG 59.002 40.000 0.00 0.00 0.00 1.85
3600 6967 5.763204 GTGAGGAAGTGGTGAAGAACATTAA 59.237 40.000 0.00 0.00 0.00 1.40
3601 6968 5.163248 TGTGAGGAAGTGGTGAAGAACATTA 60.163 40.000 0.00 0.00 0.00 1.90
3602 6969 4.137543 GTGAGGAAGTGGTGAAGAACATT 58.862 43.478 0.00 0.00 0.00 2.71
3603 6970 3.136443 TGTGAGGAAGTGGTGAAGAACAT 59.864 43.478 0.00 0.00 0.00 2.71
3604 6971 2.503765 TGTGAGGAAGTGGTGAAGAACA 59.496 45.455 0.00 0.00 0.00 3.18
3605 6972 3.194005 TGTGAGGAAGTGGTGAAGAAC 57.806 47.619 0.00 0.00 0.00 3.01
3606 6973 3.924114 TTGTGAGGAAGTGGTGAAGAA 57.076 42.857 0.00 0.00 0.00 2.52
3607 6974 3.648067 AGATTGTGAGGAAGTGGTGAAGA 59.352 43.478 0.00 0.00 0.00 2.87
3608 6975 3.750130 CAGATTGTGAGGAAGTGGTGAAG 59.250 47.826 0.00 0.00 0.00 3.02
3609 6976 3.390967 TCAGATTGTGAGGAAGTGGTGAA 59.609 43.478 0.00 0.00 0.00 3.18
3610 6977 2.972021 TCAGATTGTGAGGAAGTGGTGA 59.028 45.455 0.00 0.00 0.00 4.02
3611 6978 3.407424 TCAGATTGTGAGGAAGTGGTG 57.593 47.619 0.00 0.00 0.00 4.17
3612 6979 3.808618 GCTTCAGATTGTGAGGAAGTGGT 60.809 47.826 0.00 0.00 39.10 4.16
3613 6980 2.746362 GCTTCAGATTGTGAGGAAGTGG 59.254 50.000 0.00 0.00 39.10 4.00
3614 6981 3.405831 TGCTTCAGATTGTGAGGAAGTG 58.594 45.455 0.00 0.00 39.10 3.16
3615 6982 3.777106 TGCTTCAGATTGTGAGGAAGT 57.223 42.857 0.00 0.00 39.10 3.01
3616 6983 3.120408 CGTTGCTTCAGATTGTGAGGAAG 60.120 47.826 0.00 0.00 39.70 3.46
3617 6984 2.807967 CGTTGCTTCAGATTGTGAGGAA 59.192 45.455 0.00 0.00 36.21 3.36
3618 6985 2.224281 ACGTTGCTTCAGATTGTGAGGA 60.224 45.455 0.00 0.00 36.21 3.71
3619 6986 2.096069 CACGTTGCTTCAGATTGTGAGG 60.096 50.000 0.00 0.00 36.21 3.86
3620 6987 2.663879 GCACGTTGCTTCAGATTGTGAG 60.664 50.000 0.00 0.00 40.96 3.51
3621 6988 1.264020 GCACGTTGCTTCAGATTGTGA 59.736 47.619 0.00 0.00 40.96 3.58
3622 6989 1.002576 TGCACGTTGCTTCAGATTGTG 60.003 47.619 10.54 0.00 45.31 3.33
3623 6990 1.308047 TGCACGTTGCTTCAGATTGT 58.692 45.000 10.54 0.00 45.31 2.71
3624 6991 2.512885 GATGCACGTTGCTTCAGATTG 58.487 47.619 15.74 0.00 45.31 2.67
3625 6992 2.907910 GATGCACGTTGCTTCAGATT 57.092 45.000 15.74 0.00 45.31 2.40
3630 6997 1.733912 TCAGATGATGCACGTTGCTTC 59.266 47.619 14.54 14.54 45.31 3.86
3631 6998 1.812235 TCAGATGATGCACGTTGCTT 58.188 45.000 10.54 5.14 45.31 3.91
3632 6999 1.812235 TTCAGATGATGCACGTTGCT 58.188 45.000 10.54 0.00 45.31 3.91
3633 7000 2.838386 ATTCAGATGATGCACGTTGC 57.162 45.000 0.00 3.44 45.29 4.17
3634 7001 3.488047 GGGAATTCAGATGATGCACGTTG 60.488 47.826 7.93 0.00 0.00 4.10
3635 7002 2.684881 GGGAATTCAGATGATGCACGTT 59.315 45.455 7.93 0.00 0.00 3.99
3636 7003 2.292267 GGGAATTCAGATGATGCACGT 58.708 47.619 7.93 0.00 0.00 4.49
3637 7004 2.291365 TGGGAATTCAGATGATGCACG 58.709 47.619 7.93 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.