Multiple sequence alignment - TraesCS7A01G390100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G390100 chr7A 100.000 3687 0 0 1 3687 566339476 566343162 0.000000e+00 6809
1 TraesCS7A01G390100 chr7A 97.502 1161 11 6 1 1143 566303603 566304763 0.000000e+00 1967
2 TraesCS7A01G390100 chr7A 97.502 1161 11 6 1 1143 566327206 566328366 0.000000e+00 1967
3 TraesCS7A01G390100 chr7A 97.330 1161 13 6 1 1143 566263140 566264300 0.000000e+00 1956
4 TraesCS7A01G390100 chr7A 97.330 1161 13 6 1 1143 566279804 566280964 0.000000e+00 1956
5 TraesCS7A01G390100 chr7A 97.246 1162 13 7 1 1143 566292100 566293261 0.000000e+00 1951
6 TraesCS7A01G390100 chr7A 99.590 976 3 1 1 975 566315428 566316403 0.000000e+00 1779
7 TraesCS7A01G390100 chr7A 99.120 568 4 1 1 567 566314724 566315291 0.000000e+00 1020
8 TraesCS7A01G390100 chr7A 92.716 659 25 8 2024 2669 566130580 566131228 0.000000e+00 929
9 TraesCS7A01G390100 chr7A 88.450 658 49 14 2024 2669 566265455 566266097 0.000000e+00 769
10 TraesCS7A01G390100 chr7A 88.450 658 49 14 2024 2669 566282210 566282852 0.000000e+00 769
11 TraesCS7A01G390100 chr7A 88.450 658 49 14 2024 2669 566294791 566295433 0.000000e+00 769
12 TraesCS7A01G390100 chr7A 88.450 658 49 14 2024 2669 566305919 566306561 0.000000e+00 769
13 TraesCS7A01G390100 chr7A 88.450 658 49 14 2024 2669 566317951 566318593 0.000000e+00 769
14 TraesCS7A01G390100 chr7A 88.450 658 49 14 2024 2669 566330587 566331229 0.000000e+00 769
15 TraesCS7A01G390100 chr7A 86.616 523 33 14 1189 1700 566129435 566129931 9.010000e-151 544
16 TraesCS7A01G390100 chr7A 86.448 487 26 14 1222 1698 566264461 566264917 7.110000e-137 497
17 TraesCS7A01G390100 chr7A 86.448 487 26 14 1222 1698 566281125 566281581 7.110000e-137 497
18 TraesCS7A01G390100 chr7A 86.448 487 26 14 1222 1698 566293422 566293878 7.110000e-137 497
19 TraesCS7A01G390100 chr7A 86.448 487 26 14 1222 1698 566304924 566305380 7.110000e-137 497
20 TraesCS7A01G390100 chr7A 86.448 487 26 14 1222 1698 566328527 566328983 7.110000e-137 497
21 TraesCS7A01G390100 chr7A 84.658 365 27 15 1340 1697 566130056 566130398 1.640000e-88 337
22 TraesCS7A01G390100 chr7A 84.132 334 23 9 1369 1700 566204463 566204768 2.780000e-76 296
23 TraesCS7A01G390100 chr7A 89.510 143 12 2 2528 2669 566208542 566208682 1.050000e-40 178
24 TraesCS7A01G390100 chr7A 77.222 360 34 25 2732 3044 566131311 566131669 2.280000e-37 167
25 TraesCS7A01G390100 chr7A 78.539 219 23 14 2732 2927 566295517 566295734 5.000000e-24 122
26 TraesCS7A01G390100 chr7A 78.539 219 23 14 2732 2927 566306645 566306862 5.000000e-24 122
27 TraesCS7A01G390100 chr7A 78.082 219 24 14 2732 2927 566266181 566266398 2.330000e-22 117
28 TraesCS7A01G390100 chr7D 93.580 810 20 15 328 1116 500251125 500251923 0.000000e+00 1179
29 TraesCS7A01G390100 chr7D 87.238 1050 74 26 23 1026 500614554 500615589 0.000000e+00 1142
30 TraesCS7A01G390100 chr7D 94.369 586 31 2 1445 2029 500251922 500252506 0.000000e+00 898
31 TraesCS7A01G390100 chr7D 91.364 660 32 9 2027 2669 500246310 500246961 0.000000e+00 880
32 TraesCS7A01G390100 chr7D 89.102 679 37 12 2667 3312 500253102 500253776 0.000000e+00 809
33 TraesCS7A01G390100 chr7D 85.741 526 39 16 1189 1700 500245281 500245784 1.170000e-144 523
34 TraesCS7A01G390100 chr7D 93.860 342 21 0 3344 3685 500254633 500254974 1.960000e-142 516
35 TraesCS7A01G390100 chr7D 78.774 669 63 42 2732 3338 500247044 500247695 3.480000e-100 375
36 TraesCS7A01G390100 chr7D 93.860 228 10 3 3 227 500250736 500250962 1.270000e-89 340
37 TraesCS7A01G390100 chr7D 92.381 210 14 2 2461 2668 500252852 500253061 7.740000e-77 298
38 TraesCS7A01G390100 chr7D 78.092 283 36 10 1751 2029 500246246 500246506 4.930000e-34 156
39 TraesCS7A01G390100 chr7B 92.109 659 32 9 2024 2669 528405832 528406483 0.000000e+00 911
40 TraesCS7A01G390100 chr7B 91.705 651 20 13 406 1026 528747433 528748079 0.000000e+00 872
41 TraesCS7A01G390100 chr7B 93.197 588 35 4 1445 2029 528727330 528727915 0.000000e+00 859
42 TraesCS7A01G390100 chr7B 83.729 842 70 32 299 1116 528726533 528727331 0.000000e+00 734
43 TraesCS7A01G390100 chr7B 86.100 518 32 18 1197 1700 528404793 528405284 4.220000e-144 521
44 TraesCS7A01G390100 chr7B 92.420 343 21 2 3343 3685 221832816 221833153 5.540000e-133 484
45 TraesCS7A01G390100 chr7B 77.841 704 70 45 2712 3345 528733926 528734613 1.260000e-94 357
46 TraesCS7A01G390100 chr7B 84.401 359 34 12 1340 1697 528405416 528405753 2.120000e-87 333
47 TraesCS7A01G390100 chr7B 79.029 515 45 30 2712 3174 528406559 528407062 1.000000e-75 294
48 TraesCS7A01G390100 chr7B 86.400 250 28 5 1 247 528746901 528747147 6.070000e-68 268
49 TraesCS7A01G390100 chr3B 93.860 342 21 0 3344 3685 612800930 612801271 1.960000e-142 516
50 TraesCS7A01G390100 chr2B 94.345 336 18 1 3351 3685 323087465 323087130 7.060000e-142 514
51 TraesCS7A01G390100 chr2B 84.472 161 20 5 213 369 751286747 751286906 1.770000e-33 154
52 TraesCS7A01G390100 chr2B 87.097 124 8 5 3167 3288 19340 19457 2.310000e-27 134
53 TraesCS7A01G390100 chr5D 92.711 343 25 0 3343 3685 484028962 484029304 2.560000e-136 496
54 TraesCS7A01G390100 chr4D 92.082 341 25 2 3343 3683 15777458 15777120 2.580000e-131 479
55 TraesCS7A01G390100 chr4D 85.586 111 11 5 3177 3286 505973448 505973554 1.080000e-20 111
56 TraesCS7A01G390100 chr1D 91.837 343 26 2 3343 3684 24194963 24195304 9.260000e-131 477
57 TraesCS7A01G390100 chr1D 91.691 337 26 2 3343 3678 233926645 233926980 2.010000e-127 466
58 TraesCS7A01G390100 chr2D 93.269 312 19 1 3343 3654 615052098 615051789 3.360000e-125 459
59 TraesCS7A01G390100 chr6D 88.298 188 16 4 1249 1434 313016185 313016002 1.720000e-53 220
60 TraesCS7A01G390100 chr1B 85.714 126 14 3 3173 3297 8087803 8087681 2.990000e-26 130
61 TraesCS7A01G390100 chr1A 86.607 112 12 2 3178 3287 241663844 241663954 1.800000e-23 121
62 TraesCS7A01G390100 chr1A 84.821 112 14 2 3178 3287 510361085 510360975 3.890000e-20 110
63 TraesCS7A01G390100 chr4A 83.459 133 16 6 3178 3308 83741250 83741378 6.470000e-23 119
64 TraesCS7A01G390100 chr5A 83.333 120 14 5 3170 3287 11529554 11529669 5.040000e-19 106
65 TraesCS7A01G390100 chr6B 81.746 126 19 3 3184 3307 93834779 93834656 6.510000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G390100 chr7A 566339476 566343162 3686 False 6809.000000 6809 100.000000 1 3687 1 chr7A.!!$F1 3686
1 TraesCS7A01G390100 chr7A 566314724 566318593 3869 False 1189.333333 1779 95.720000 1 2669 3 chr7A.!!$F8 2668
2 TraesCS7A01G390100 chr7A 566327206 566331229 4023 False 1077.666667 1967 90.800000 1 2669 3 chr7A.!!$F9 2668
3 TraesCS7A01G390100 chr7A 566279804 566282852 3048 False 1074.000000 1956 90.742667 1 2669 3 chr7A.!!$F5 2668
4 TraesCS7A01G390100 chr7A 566303603 566306862 3259 False 838.750000 1967 87.734750 1 2927 4 chr7A.!!$F7 2926
5 TraesCS7A01G390100 chr7A 566263140 566266398 3258 False 834.750000 1956 87.577500 1 2927 4 chr7A.!!$F4 2926
6 TraesCS7A01G390100 chr7A 566292100 566295734 3634 False 834.750000 1951 87.670750 1 2927 4 chr7A.!!$F6 2926
7 TraesCS7A01G390100 chr7A 566129435 566131669 2234 False 494.250000 929 85.303000 1189 3044 4 chr7A.!!$F2 1855
8 TraesCS7A01G390100 chr7A 566204463 566208682 4219 False 237.000000 296 86.821000 1369 2669 2 chr7A.!!$F3 1300
9 TraesCS7A01G390100 chr7D 500614554 500615589 1035 False 1142.000000 1142 87.238000 23 1026 1 chr7D.!!$F1 1003
10 TraesCS7A01G390100 chr7D 500245281 500254974 9693 False 597.400000 1179 89.112300 3 3685 10 chr7D.!!$F2 3682
11 TraesCS7A01G390100 chr7B 528726533 528727915 1382 False 796.500000 859 88.463000 299 2029 2 chr7B.!!$F4 1730
12 TraesCS7A01G390100 chr7B 528746901 528748079 1178 False 570.000000 872 89.052500 1 1026 2 chr7B.!!$F5 1025
13 TraesCS7A01G390100 chr7B 528404793 528407062 2269 False 514.750000 911 85.409750 1197 3174 4 chr7B.!!$F3 1977
14 TraesCS7A01G390100 chr7B 528733926 528734613 687 False 357.000000 357 77.841000 2712 3345 1 chr7B.!!$F2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 7633 1.790838 CGTTCGCTCCTTCTACGACAG 60.791 57.143 0.00 0.00 35.2 3.51 F
1382 10090 0.037326 TTTGGCTGGCTGACGTCTAG 60.037 55.000 17.92 13.15 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 10850 0.035317 AGCTGCGGAGTTCAACATGA 59.965 50.0 5.62 0.0 0.00 3.07 R
2760 14571 0.178975 AAGGATCAAACGGGGCAACA 60.179 50.0 0.00 0.0 39.74 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
992 7633 1.790838 CGTTCGCTCCTTCTACGACAG 60.791 57.143 0.00 0.00 35.20 3.51
1052 7711 2.523168 TCCGTGCTCCTCACCACA 60.523 61.111 0.00 0.00 42.69 4.17
1063 7722 2.664851 CACCACACGCCACGACAT 60.665 61.111 0.00 0.00 0.00 3.06
1094 7753 2.797278 CCTCCATACCGGCGAGCTT 61.797 63.158 9.30 0.00 33.14 3.74
1116 7775 1.106285 GGTAAGCCTTGATTGCCTGG 58.894 55.000 0.00 0.00 31.35 4.45
1143 7802 2.231478 CCACTCTCTTAGGCTCGTTTCA 59.769 50.000 0.00 0.00 0.00 2.69
1144 7803 3.246619 CACTCTCTTAGGCTCGTTTCAC 58.753 50.000 0.00 0.00 0.00 3.18
1145 7804 3.057174 CACTCTCTTAGGCTCGTTTCACT 60.057 47.826 0.00 0.00 0.00 3.41
1146 7805 3.574826 ACTCTCTTAGGCTCGTTTCACTT 59.425 43.478 0.00 0.00 0.00 3.16
1149 7858 4.220821 TCTCTTAGGCTCGTTTCACTTCAT 59.779 41.667 0.00 0.00 0.00 2.57
1163 7872 9.307121 CGTTTCACTTCATTATCTTATCTCAGT 57.693 33.333 0.00 0.00 0.00 3.41
1179 7888 5.677319 TCTCAGTTCAATTTAGACCGGAT 57.323 39.130 9.46 0.00 0.00 4.18
1180 7889 6.049955 TCTCAGTTCAATTTAGACCGGATT 57.950 37.500 9.46 0.00 0.00 3.01
1181 7890 5.874810 TCTCAGTTCAATTTAGACCGGATTG 59.125 40.000 9.46 7.55 33.24 2.67
1245 8010 7.481798 CGTTTAAGTGCTGAATTTTACTGGATC 59.518 37.037 0.00 0.00 0.00 3.36
1246 8011 7.994425 TTAAGTGCTGAATTTTACTGGATCA 57.006 32.000 0.00 0.00 0.00 2.92
1247 8012 8.579850 TTAAGTGCTGAATTTTACTGGATCAT 57.420 30.769 0.00 0.00 0.00 2.45
1334 8099 4.329545 GGACAGGCTCCGTTGGCA 62.330 66.667 0.00 0.00 34.73 4.92
1380 10088 0.250901 AATTTGGCTGGCTGACGTCT 60.251 50.000 17.92 0.00 0.00 4.18
1381 10089 0.613260 ATTTGGCTGGCTGACGTCTA 59.387 50.000 17.92 2.26 0.00 2.59
1382 10090 0.037326 TTTGGCTGGCTGACGTCTAG 60.037 55.000 17.92 13.15 0.00 2.43
1432 10140 3.808728 TGTGAGAAACAGCAAAGCTAGT 58.191 40.909 0.00 0.00 36.40 2.57
1436 10146 5.467063 GTGAGAAACAGCAAAGCTAGTAAGT 59.533 40.000 0.00 0.00 36.40 2.24
1462 10172 1.078918 TGATTCACTCTGCTGGCCG 60.079 57.895 0.00 0.00 0.00 6.13
1490 10200 1.678635 CGCTGGGCCTGAAAATGGA 60.679 57.895 15.36 0.00 0.00 3.41
1532 10242 0.968405 AATTGGCGTGCCATCTTTGT 59.032 45.000 15.40 0.00 46.64 2.83
1533 10243 0.244450 ATTGGCGTGCCATCTTTGTG 59.756 50.000 15.40 0.00 46.64 3.33
1534 10244 0.821301 TTGGCGTGCCATCTTTGTGA 60.821 50.000 15.40 0.00 46.64 3.58
1541 10251 3.252215 CGTGCCATCTTTGTGAAAAGGTA 59.748 43.478 0.00 0.00 0.00 3.08
1566 10281 4.234550 AGTAGGGCCATGAATCAGTGATA 58.765 43.478 6.18 0.00 0.00 2.15
1569 10284 4.404640 AGGGCCATGAATCAGTGATATTG 58.595 43.478 6.18 4.66 0.00 1.90
1570 10285 3.057033 GGGCCATGAATCAGTGATATTGC 60.057 47.826 5.94 4.85 0.00 3.56
1571 10286 3.057033 GGCCATGAATCAGTGATATTGCC 60.057 47.826 12.76 12.76 0.00 4.52
1572 10287 3.825014 GCCATGAATCAGTGATATTGCCT 59.175 43.478 5.94 0.00 0.00 4.75
1573 10288 4.280174 GCCATGAATCAGTGATATTGCCTT 59.720 41.667 5.94 0.00 0.00 4.35
1574 10289 5.474532 GCCATGAATCAGTGATATTGCCTTA 59.525 40.000 5.94 0.00 0.00 2.69
1575 10290 6.152323 GCCATGAATCAGTGATATTGCCTTAT 59.848 38.462 5.94 0.00 0.00 1.73
1576 10291 7.309621 GCCATGAATCAGTGATATTGCCTTATT 60.310 37.037 5.94 0.00 0.00 1.40
1577 10292 8.027189 CCATGAATCAGTGATATTGCCTTATTG 58.973 37.037 5.94 0.00 0.00 1.90
1578 10293 8.789762 CATGAATCAGTGATATTGCCTTATTGA 58.210 33.333 5.94 0.00 0.00 2.57
1579 10294 8.750515 TGAATCAGTGATATTGCCTTATTGAA 57.249 30.769 5.94 0.00 0.00 2.69
1580 10295 9.187996 TGAATCAGTGATATTGCCTTATTGAAA 57.812 29.630 5.94 0.00 0.00 2.69
1628 10343 5.104652 GGGTGGAACAGTGTATATAAGGTGT 60.105 44.000 0.00 0.00 41.80 4.16
1655 10370 3.866651 TCCTGTAGCTTTCAGATCTTGC 58.133 45.455 16.70 0.00 35.20 4.01
1660 10375 5.744171 TGTAGCTTTCAGATCTTGCCATAA 58.256 37.500 0.00 0.00 0.00 1.90
1683 10403 2.618053 GCAAACAGCGACCTATACTGT 58.382 47.619 0.00 0.00 46.27 3.55
1684 10404 2.348666 GCAAACAGCGACCTATACTGTG 59.651 50.000 0.00 0.00 43.63 3.66
1688 10408 5.395682 AACAGCGACCTATACTGTGTTAA 57.604 39.130 0.00 0.00 43.63 2.01
1839 10692 3.634397 TTTATGCTAGGACAAGCTGCT 57.366 42.857 0.00 0.00 43.19 4.24
1840 10693 4.753516 TTTATGCTAGGACAAGCTGCTA 57.246 40.909 0.90 0.00 43.19 3.49
1841 10694 2.611225 ATGCTAGGACAAGCTGCTAC 57.389 50.000 0.90 0.00 43.19 3.58
1842 10695 1.561643 TGCTAGGACAAGCTGCTACT 58.438 50.000 0.90 1.95 43.19 2.57
1843 10696 1.902508 TGCTAGGACAAGCTGCTACTT 59.097 47.619 0.90 0.00 43.19 2.24
1849 10702 1.878775 CAAGCTGCTACTTGGGTGC 59.121 57.895 0.90 0.00 42.73 5.01
1850 10703 0.890542 CAAGCTGCTACTTGGGTGCA 60.891 55.000 0.90 0.00 42.73 4.57
1852 10705 3.583383 CTGCTACTTGGGTGCAGC 58.417 61.111 7.55 7.55 45.76 5.25
1853 10706 1.002868 CTGCTACTTGGGTGCAGCT 60.003 57.895 16.65 0.00 45.76 4.24
1854 10707 0.250234 CTGCTACTTGGGTGCAGCTA 59.750 55.000 16.65 6.91 45.76 3.32
1855 10708 0.690192 TGCTACTTGGGTGCAGCTAA 59.310 50.000 16.65 15.38 35.05 3.09
1856 10709 1.073125 TGCTACTTGGGTGCAGCTAAA 59.927 47.619 15.75 9.80 35.05 1.85
1857 10710 1.468914 GCTACTTGGGTGCAGCTAAAC 59.531 52.381 15.75 0.00 0.00 2.01
1858 10711 2.876079 GCTACTTGGGTGCAGCTAAACT 60.876 50.000 15.75 6.62 0.00 2.66
1859 10712 1.897560 ACTTGGGTGCAGCTAAACTC 58.102 50.000 15.75 0.00 0.00 3.01
1860 10713 1.142870 ACTTGGGTGCAGCTAAACTCA 59.857 47.619 15.75 1.13 0.00 3.41
1861 10714 2.229792 CTTGGGTGCAGCTAAACTCAA 58.770 47.619 15.75 11.61 34.42 3.02
1862 10715 2.356665 TGGGTGCAGCTAAACTCAAA 57.643 45.000 16.65 0.00 0.00 2.69
1863 10716 2.660572 TGGGTGCAGCTAAACTCAAAA 58.339 42.857 16.65 0.00 0.00 2.44
1864 10717 2.360801 TGGGTGCAGCTAAACTCAAAAC 59.639 45.455 16.65 0.00 0.00 2.43
1865 10718 2.360801 GGGTGCAGCTAAACTCAAAACA 59.639 45.455 16.65 0.00 0.00 2.83
1866 10719 3.550842 GGGTGCAGCTAAACTCAAAACAG 60.551 47.826 16.65 0.00 0.00 3.16
1867 10720 3.315191 GGTGCAGCTAAACTCAAAACAGA 59.685 43.478 9.07 0.00 0.00 3.41
1868 10721 4.022849 GGTGCAGCTAAACTCAAAACAGAT 60.023 41.667 9.07 0.00 0.00 2.90
1869 10722 5.181245 GGTGCAGCTAAACTCAAAACAGATA 59.819 40.000 9.07 0.00 0.00 1.98
1870 10723 6.127897 GGTGCAGCTAAACTCAAAACAGATAT 60.128 38.462 9.07 0.00 0.00 1.63
1871 10724 7.065803 GGTGCAGCTAAACTCAAAACAGATATA 59.934 37.037 9.07 0.00 0.00 0.86
1872 10725 8.616076 GTGCAGCTAAACTCAAAACAGATATAT 58.384 33.333 0.00 0.00 0.00 0.86
1873 10726 8.615211 TGCAGCTAAACTCAAAACAGATATATG 58.385 33.333 0.00 0.00 0.00 1.78
1874 10727 7.589221 GCAGCTAAACTCAAAACAGATATATGC 59.411 37.037 0.00 0.00 0.00 3.14
1875 10728 7.795734 CAGCTAAACTCAAAACAGATATATGCG 59.204 37.037 0.00 0.00 0.00 4.73
1876 10729 7.041780 AGCTAAACTCAAAACAGATATATGCGG 60.042 37.037 0.00 0.00 0.00 5.69
1877 10730 7.254795 GCTAAACTCAAAACAGATATATGCGGT 60.255 37.037 0.00 0.00 0.00 5.68
1878 10731 9.256477 CTAAACTCAAAACAGATATATGCGGTA 57.744 33.333 0.00 0.00 0.00 4.02
1879 10732 7.715265 AACTCAAAACAGATATATGCGGTAG 57.285 36.000 0.00 0.00 0.00 3.18
1880 10733 7.050970 ACTCAAAACAGATATATGCGGTAGA 57.949 36.000 0.00 0.00 0.00 2.59
1881 10734 7.671302 ACTCAAAACAGATATATGCGGTAGAT 58.329 34.615 0.00 0.00 0.00 1.98
1882 10735 8.150945 ACTCAAAACAGATATATGCGGTAGATT 58.849 33.333 0.00 0.00 0.00 2.40
1883 10736 8.902540 TCAAAACAGATATATGCGGTAGATTT 57.097 30.769 0.00 0.00 0.00 2.17
1884 10737 9.990360 TCAAAACAGATATATGCGGTAGATTTA 57.010 29.630 0.00 0.00 0.00 1.40
1887 10740 8.948631 AACAGATATATGCGGTAGATTTATGG 57.051 34.615 0.00 0.00 0.00 2.74
1888 10741 6.986817 ACAGATATATGCGGTAGATTTATGGC 59.013 38.462 0.00 0.00 0.00 4.40
1889 10742 6.144563 CAGATATATGCGGTAGATTTATGGCG 59.855 42.308 0.00 0.00 0.00 5.69
1890 10743 2.543777 ATGCGGTAGATTTATGGCGT 57.456 45.000 0.00 0.00 0.00 5.68
1891 10744 2.319136 TGCGGTAGATTTATGGCGTT 57.681 45.000 0.00 0.00 0.00 4.84
1892 10745 2.634600 TGCGGTAGATTTATGGCGTTT 58.365 42.857 0.00 0.00 0.00 3.60
1893 10746 3.011119 TGCGGTAGATTTATGGCGTTTT 58.989 40.909 0.00 0.00 0.00 2.43
1894 10747 3.181505 TGCGGTAGATTTATGGCGTTTTG 60.182 43.478 0.00 0.00 0.00 2.44
1895 10748 3.064271 GCGGTAGATTTATGGCGTTTTGA 59.936 43.478 0.00 0.00 0.00 2.69
1896 10749 4.437659 GCGGTAGATTTATGGCGTTTTGAA 60.438 41.667 0.00 0.00 0.00 2.69
1897 10750 5.025826 CGGTAGATTTATGGCGTTTTGAAC 58.974 41.667 0.00 0.00 0.00 3.18
1898 10751 5.163794 CGGTAGATTTATGGCGTTTTGAACT 60.164 40.000 0.00 0.00 0.00 3.01
1899 10752 6.027749 GGTAGATTTATGGCGTTTTGAACTG 58.972 40.000 0.00 0.00 0.00 3.16
1900 10753 5.957842 AGATTTATGGCGTTTTGAACTGA 57.042 34.783 0.00 0.00 0.00 3.41
1901 10754 6.325919 AGATTTATGGCGTTTTGAACTGAA 57.674 33.333 0.00 0.00 0.00 3.02
1902 10755 6.744112 AGATTTATGGCGTTTTGAACTGAAA 58.256 32.000 0.00 0.00 0.00 2.69
1903 10756 7.206687 AGATTTATGGCGTTTTGAACTGAAAA 58.793 30.769 0.00 0.00 0.00 2.29
1904 10757 6.820470 TTTATGGCGTTTTGAACTGAAAAG 57.180 33.333 0.00 0.00 0.00 2.27
1905 10758 3.157932 TGGCGTTTTGAACTGAAAAGG 57.842 42.857 0.00 0.00 35.01 3.11
1906 10759 2.159170 TGGCGTTTTGAACTGAAAAGGG 60.159 45.455 0.00 0.00 33.35 3.95
1907 10760 2.469826 GCGTTTTGAACTGAAAAGGGG 58.530 47.619 0.00 0.00 33.35 4.79
1908 10761 2.469826 CGTTTTGAACTGAAAAGGGGC 58.530 47.619 0.00 0.00 30.53 5.80
1909 10762 2.801699 CGTTTTGAACTGAAAAGGGGCC 60.802 50.000 0.00 0.00 30.53 5.80
1910 10763 2.166907 TTTGAACTGAAAAGGGGCCA 57.833 45.000 4.39 0.00 0.00 5.36
1911 10764 2.166907 TTGAACTGAAAAGGGGCCAA 57.833 45.000 4.39 0.00 0.00 4.52
1912 10765 2.166907 TGAACTGAAAAGGGGCCAAA 57.833 45.000 4.39 0.00 0.00 3.28
1913 10766 2.688477 TGAACTGAAAAGGGGCCAAAT 58.312 42.857 4.39 0.00 0.00 2.32
1914 10767 3.850752 TGAACTGAAAAGGGGCCAAATA 58.149 40.909 4.39 0.00 0.00 1.40
1915 10768 4.227197 TGAACTGAAAAGGGGCCAAATAA 58.773 39.130 4.39 0.00 0.00 1.40
1916 10769 4.843516 TGAACTGAAAAGGGGCCAAATAAT 59.156 37.500 4.39 0.00 0.00 1.28
1917 10770 5.309282 TGAACTGAAAAGGGGCCAAATAATT 59.691 36.000 4.39 0.00 0.00 1.40
1918 10771 6.498651 TGAACTGAAAAGGGGCCAAATAATTA 59.501 34.615 4.39 0.00 0.00 1.40
1919 10772 6.943899 ACTGAAAAGGGGCCAAATAATTAA 57.056 33.333 4.39 0.00 0.00 1.40
1920 10773 6.946340 ACTGAAAAGGGGCCAAATAATTAAG 58.054 36.000 4.39 0.00 0.00 1.85
1921 10774 6.728632 ACTGAAAAGGGGCCAAATAATTAAGA 59.271 34.615 4.39 0.00 0.00 2.10
1922 10775 7.093333 ACTGAAAAGGGGCCAAATAATTAAGAG 60.093 37.037 4.39 0.00 0.00 2.85
1923 10776 6.728632 TGAAAAGGGGCCAAATAATTAAGAGT 59.271 34.615 4.39 0.00 0.00 3.24
1924 10777 7.236640 TGAAAAGGGGCCAAATAATTAAGAGTT 59.763 33.333 4.39 0.00 0.00 3.01
1925 10778 7.568128 AAAGGGGCCAAATAATTAAGAGTTT 57.432 32.000 4.39 0.00 0.00 2.66
1926 10779 7.568128 AAGGGGCCAAATAATTAAGAGTTTT 57.432 32.000 4.39 0.00 0.00 2.43
1927 10780 7.568128 AGGGGCCAAATAATTAAGAGTTTTT 57.432 32.000 4.39 0.00 0.00 1.94
1928 10781 7.394016 AGGGGCCAAATAATTAAGAGTTTTTG 58.606 34.615 4.39 0.00 0.00 2.44
1929 10782 6.597672 GGGGCCAAATAATTAAGAGTTTTTGG 59.402 38.462 16.57 16.57 43.69 3.28
1930 10783 7.390823 GGGCCAAATAATTAAGAGTTTTTGGA 58.609 34.615 21.90 0.00 43.59 3.53
1931 10784 7.333423 GGGCCAAATAATTAAGAGTTTTTGGAC 59.667 37.037 21.90 19.98 46.73 4.02
1932 10785 7.875554 GGCCAAATAATTAAGAGTTTTTGGACA 59.124 33.333 21.90 0.00 46.70 4.02
1933 10786 8.925700 GCCAAATAATTAAGAGTTTTTGGACAG 58.074 33.333 21.90 4.44 43.59 3.51
1934 10787 9.981114 CCAAATAATTAAGAGTTTTTGGACAGT 57.019 29.630 16.13 0.00 43.59 3.55
1940 10793 9.797556 AATTAAGAGTTTTTGGACAGTTGTTAC 57.202 29.630 0.00 0.00 0.00 2.50
1941 10794 6.827586 AAGAGTTTTTGGACAGTTGTTACA 57.172 33.333 0.00 0.00 0.00 2.41
1942 10795 7.404671 AAGAGTTTTTGGACAGTTGTTACAT 57.595 32.000 0.00 0.00 0.00 2.29
1943 10796 7.404671 AGAGTTTTTGGACAGTTGTTACATT 57.595 32.000 0.00 0.00 0.00 2.71
1944 10797 7.257722 AGAGTTTTTGGACAGTTGTTACATTG 58.742 34.615 0.00 0.00 0.00 2.82
1945 10798 6.930731 AGTTTTTGGACAGTTGTTACATTGT 58.069 32.000 3.28 3.28 0.00 2.71
1946 10799 6.811170 AGTTTTTGGACAGTTGTTACATTGTG 59.189 34.615 7.56 0.00 0.00 3.33
1947 10800 5.906113 TTTGGACAGTTGTTACATTGTGT 57.094 34.783 7.56 1.88 0.00 3.72
1948 10801 5.493133 TTGGACAGTTGTTACATTGTGTC 57.507 39.130 7.56 9.71 34.77 3.67
1949 10802 4.518249 TGGACAGTTGTTACATTGTGTCA 58.482 39.130 17.83 9.85 36.79 3.58
1950 10803 4.574421 TGGACAGTTGTTACATTGTGTCAG 59.426 41.667 17.83 0.00 36.79 3.51
1951 10804 4.527564 GACAGTTGTTACATTGTGTCAGC 58.472 43.478 13.74 1.28 35.45 4.26
1952 10805 3.315191 ACAGTTGTTACATTGTGTCAGCC 59.685 43.478 0.00 0.00 0.00 4.85
1953 10806 2.548057 AGTTGTTACATTGTGTCAGCCG 59.452 45.455 0.00 0.00 0.00 5.52
1954 10807 2.248280 TGTTACATTGTGTCAGCCGT 57.752 45.000 0.00 0.00 0.00 5.68
1955 10808 1.870402 TGTTACATTGTGTCAGCCGTG 59.130 47.619 0.00 0.00 0.00 4.94
1956 10809 0.871722 TTACATTGTGTCAGCCGTGC 59.128 50.000 0.00 0.00 0.00 5.34
1957 10810 0.250081 TACATTGTGTCAGCCGTGCA 60.250 50.000 0.00 0.00 0.00 4.57
1958 10811 1.208358 CATTGTGTCAGCCGTGCAG 59.792 57.895 0.00 0.00 0.00 4.41
1959 10812 1.071299 ATTGTGTCAGCCGTGCAGA 59.929 52.632 0.00 0.00 0.00 4.26
1960 10813 1.230635 ATTGTGTCAGCCGTGCAGAC 61.231 55.000 12.33 12.33 43.67 3.51
1961 10814 2.029666 GTGTCAGCCGTGCAGACT 59.970 61.111 17.51 0.00 43.73 3.24
1962 10815 2.024319 GTGTCAGCCGTGCAGACTC 61.024 63.158 17.51 12.50 43.73 3.36
1963 10816 2.340078 GTCAGCCGTGCAGACTCA 59.660 61.111 12.07 0.00 40.93 3.41
1964 10817 1.735920 GTCAGCCGTGCAGACTCAG 60.736 63.158 12.07 0.00 40.93 3.35
1965 10818 3.117171 CAGCCGTGCAGACTCAGC 61.117 66.667 0.00 0.00 0.00 4.26
1966 10819 3.619767 AGCCGTGCAGACTCAGCA 61.620 61.111 0.00 0.00 40.19 4.41
1967 10820 2.666190 GCCGTGCAGACTCAGCAA 60.666 61.111 0.00 0.00 44.64 3.91
1968 10821 2.037136 GCCGTGCAGACTCAGCAAT 61.037 57.895 0.00 0.00 44.64 3.56
1969 10822 0.740868 GCCGTGCAGACTCAGCAATA 60.741 55.000 0.00 0.00 44.64 1.90
1970 10823 1.945387 CCGTGCAGACTCAGCAATAT 58.055 50.000 0.00 0.00 44.64 1.28
1971 10824 2.283298 CCGTGCAGACTCAGCAATATT 58.717 47.619 0.00 0.00 44.64 1.28
1972 10825 2.679837 CCGTGCAGACTCAGCAATATTT 59.320 45.455 0.00 0.00 44.64 1.40
1973 10826 3.127548 CCGTGCAGACTCAGCAATATTTT 59.872 43.478 0.00 0.00 44.64 1.82
1974 10827 4.337763 CGTGCAGACTCAGCAATATTTTC 58.662 43.478 0.00 0.00 44.64 2.29
1975 10828 4.142838 CGTGCAGACTCAGCAATATTTTCA 60.143 41.667 0.00 0.00 44.64 2.69
1976 10829 5.330295 GTGCAGACTCAGCAATATTTTCAG 58.670 41.667 0.00 0.00 44.64 3.02
1977 10830 5.122869 GTGCAGACTCAGCAATATTTTCAGA 59.877 40.000 0.00 0.00 44.64 3.27
1978 10831 5.884232 TGCAGACTCAGCAATATTTTCAGAT 59.116 36.000 0.00 0.00 39.39 2.90
1979 10832 7.011763 GTGCAGACTCAGCAATATTTTCAGATA 59.988 37.037 0.00 0.00 44.64 1.98
1980 10833 7.011763 TGCAGACTCAGCAATATTTTCAGATAC 59.988 37.037 0.00 0.00 39.39 2.24
1981 10834 7.226325 GCAGACTCAGCAATATTTTCAGATACT 59.774 37.037 0.00 0.00 0.00 2.12
1982 10835 8.549548 CAGACTCAGCAATATTTTCAGATACTG 58.450 37.037 0.00 0.00 0.00 2.74
1983 10836 8.481314 AGACTCAGCAATATTTTCAGATACTGA 58.519 33.333 0.00 0.00 38.87 3.41
1984 10837 9.270640 GACTCAGCAATATTTTCAGATACTGAT 57.729 33.333 2.30 0.00 40.39 2.90
1985 10838 9.270640 ACTCAGCAATATTTTCAGATACTGATC 57.729 33.333 2.30 0.00 40.39 2.92
1986 10839 8.613060 TCAGCAATATTTTCAGATACTGATCC 57.387 34.615 2.30 0.00 40.39 3.36
1987 10840 8.435187 TCAGCAATATTTTCAGATACTGATCCT 58.565 33.333 2.30 0.00 40.39 3.24
1988 10841 9.716531 CAGCAATATTTTCAGATACTGATCCTA 57.283 33.333 2.30 0.00 40.39 2.94
1999 10852 9.813826 TCAGATACTGATCCTAATGTATCTTCA 57.186 33.333 10.59 0.99 45.10 3.02
2004 10857 8.899427 ACTGATCCTAATGTATCTTCATGTTG 57.101 34.615 0.00 0.00 0.00 3.33
2005 10858 8.708378 ACTGATCCTAATGTATCTTCATGTTGA 58.292 33.333 0.00 0.00 0.00 3.18
2006 10859 9.551734 CTGATCCTAATGTATCTTCATGTTGAA 57.448 33.333 0.00 0.00 34.79 2.69
2007 10860 9.330063 TGATCCTAATGTATCTTCATGTTGAAC 57.670 33.333 0.00 0.00 32.21 3.18
2008 10861 9.553064 GATCCTAATGTATCTTCATGTTGAACT 57.447 33.333 0.00 0.00 32.21 3.01
2009 10862 8.948631 TCCTAATGTATCTTCATGTTGAACTC 57.051 34.615 0.00 0.00 32.21 3.01
2010 10863 7.987458 TCCTAATGTATCTTCATGTTGAACTCC 59.013 37.037 0.00 0.00 32.21 3.85
2011 10864 6.668541 AATGTATCTTCATGTTGAACTCCG 57.331 37.500 0.00 0.00 32.21 4.63
2012 10865 3.932710 TGTATCTTCATGTTGAACTCCGC 59.067 43.478 0.00 0.00 32.21 5.54
2013 10866 2.542020 TCTTCATGTTGAACTCCGCA 57.458 45.000 0.00 0.00 32.21 5.69
2014 10867 2.416747 TCTTCATGTTGAACTCCGCAG 58.583 47.619 0.00 0.00 32.21 5.18
2015 10868 0.874390 TTCATGTTGAACTCCGCAGC 59.126 50.000 0.00 0.00 30.26 5.25
2016 10869 0.035317 TCATGTTGAACTCCGCAGCT 59.965 50.000 0.00 0.00 0.00 4.24
2017 10870 1.275010 TCATGTTGAACTCCGCAGCTA 59.725 47.619 0.00 0.00 0.00 3.32
2018 10871 2.093500 TCATGTTGAACTCCGCAGCTAT 60.093 45.455 0.00 0.00 0.00 2.97
2019 10872 1.725641 TGTTGAACTCCGCAGCTATG 58.274 50.000 0.00 0.00 0.00 2.23
2020 10873 1.001974 TGTTGAACTCCGCAGCTATGT 59.998 47.619 0.00 0.00 0.00 2.29
2021 10874 2.076863 GTTGAACTCCGCAGCTATGTT 58.923 47.619 0.00 0.00 0.00 2.71
2022 10875 2.010145 TGAACTCCGCAGCTATGTTC 57.990 50.000 11.80 11.80 37.92 3.18
2023 10876 1.275010 TGAACTCCGCAGCTATGTTCA 59.725 47.619 15.39 15.39 42.81 3.18
2024 10877 1.929836 GAACTCCGCAGCTATGTTCAG 59.070 52.381 13.09 0.00 37.52 3.02
2025 10878 0.898320 ACTCCGCAGCTATGTTCAGT 59.102 50.000 0.00 0.00 0.00 3.41
2026 10879 1.276421 ACTCCGCAGCTATGTTCAGTT 59.724 47.619 0.00 0.00 0.00 3.16
2027 10880 1.662629 CTCCGCAGCTATGTTCAGTTG 59.337 52.381 0.00 0.00 0.00 3.16
2028 10881 1.001974 TCCGCAGCTATGTTCAGTTGT 59.998 47.619 0.00 0.00 0.00 3.32
2259 11125 0.755079 TCATAATCCTGAGCAGCGCT 59.245 50.000 2.64 2.64 43.88 5.92
2280 11146 1.089920 CCAAGATTTCTCACCAGGCG 58.910 55.000 0.00 0.00 0.00 5.52
2281 11147 1.089920 CAAGATTTCTCACCAGGCGG 58.910 55.000 0.00 0.00 38.77 6.13
2282 11148 0.678048 AAGATTTCTCACCAGGCGGC 60.678 55.000 0.00 0.00 34.57 6.53
2283 11149 1.377202 GATTTCTCACCAGGCGGCA 60.377 57.895 13.08 0.00 34.57 5.69
2284 11150 1.372087 GATTTCTCACCAGGCGGCAG 61.372 60.000 13.08 2.03 34.57 4.85
2285 11151 2.826777 ATTTCTCACCAGGCGGCAGG 62.827 60.000 19.31 19.31 34.57 4.85
2385 11258 2.187958 TGGATCCAACCAGTACTCCAG 58.812 52.381 13.46 0.00 34.77 3.86
2401 11274 0.618968 CCAGGCTGGAAGAGTACCCT 60.619 60.000 29.96 0.00 40.96 4.34
2430 11309 4.406173 CGACTGCGAGTCCAGCGT 62.406 66.667 9.71 0.00 42.12 5.07
2526 14261 4.090090 AGGCAGGCACTAGGTATGTATAG 58.910 47.826 0.00 0.00 36.02 1.31
2533 14276 5.415077 GGCACTAGGTATGTATAGTCATCGT 59.585 44.000 0.00 0.00 29.77 3.73
2545 14288 8.692110 TGTATAGTCATCGTGTAAATTTCGTT 57.308 30.769 0.00 0.00 0.00 3.85
2548 14291 6.153212 AGTCATCGTGTAAATTTCGTTGAG 57.847 37.500 10.19 0.00 35.19 3.02
2554 14297 5.293814 TCGTGTAAATTTCGTTGAGTTTCCA 59.706 36.000 0.00 0.00 0.00 3.53
2581 14339 3.091545 TGATCTTGGGGCTGATGAAAAC 58.908 45.455 0.00 0.00 0.00 2.43
2583 14341 0.109132 CTTGGGGCTGATGAAAACGC 60.109 55.000 0.00 0.00 0.00 4.84
2588 14347 1.541588 GGGCTGATGAAAACGCTCTTT 59.458 47.619 0.00 0.00 0.00 2.52
2619 14378 0.250295 CTGGAGAACAACAAGGCCGA 60.250 55.000 0.00 0.00 0.00 5.54
2676 14477 1.548719 CCTCCACACCATAACAGTCGA 59.451 52.381 0.00 0.00 0.00 4.20
2709 14510 4.021229 AGACGAGGGAATGTGTGTATGTA 58.979 43.478 0.00 0.00 0.00 2.29
2754 14565 4.201920 GGTTCTATTCCGTTCCATGCTTTC 60.202 45.833 0.00 0.00 0.00 2.62
2757 14568 5.253330 TCTATTCCGTTCCATGCTTTCTTT 58.747 37.500 0.00 0.00 0.00 2.52
2758 14569 3.641437 TTCCGTTCCATGCTTTCTTTG 57.359 42.857 0.00 0.00 0.00 2.77
2759 14570 1.269448 TCCGTTCCATGCTTTCTTTGC 59.731 47.619 0.00 0.00 0.00 3.68
2760 14571 1.270550 CCGTTCCATGCTTTCTTTGCT 59.729 47.619 0.00 0.00 0.00 3.91
2761 14572 2.322161 CGTTCCATGCTTTCTTTGCTG 58.678 47.619 0.00 0.00 0.00 4.41
2805 14628 4.351054 CAGGGGGAGTGGGTGTGC 62.351 72.222 0.00 0.00 0.00 4.57
2850 14685 2.548067 GGTGTGCACTTGTACTAGCAGT 60.548 50.000 19.41 0.00 37.72 4.40
2851 14686 2.476619 GTGTGCACTTGTACTAGCAGTG 59.523 50.000 19.41 7.33 37.72 3.66
2852 14687 2.102420 TGTGCACTTGTACTAGCAGTGT 59.898 45.455 19.41 0.00 37.72 3.55
2886 14726 8.194104 TGTGATGGTTGTGTAAATTATTATGGC 58.806 33.333 0.00 0.00 0.00 4.40
2958 14821 4.147322 CGTGCGTGCCGATTGGTC 62.147 66.667 0.00 0.00 37.67 4.02
2974 14837 6.485313 CCGATTGGTCTTGCAGGTTTATAATA 59.515 38.462 0.00 0.00 0.00 0.98
2990 14860 7.229106 GGTTTATAATATCGGGTTGTAAGCCAA 59.771 37.037 12.75 0.00 46.75 4.52
3114 15007 6.823689 GGTGTATGAGTTGGTATTTCATCTGT 59.176 38.462 0.00 0.00 33.81 3.41
3194 15092 1.226156 GTTTGTGTGTGCGCGTTGA 60.226 52.632 8.43 0.00 0.00 3.18
3235 15133 0.821517 CTATGCACAGACCGGGTGTA 59.178 55.000 3.30 4.24 38.51 2.90
3256 15169 7.416664 GGTGTATGCTCATTGTTTTGTATCCAT 60.417 37.037 0.00 0.00 0.00 3.41
3335 15653 1.353694 AGCTCCCTCAAAGTGATGCTT 59.646 47.619 0.00 0.00 39.52 3.91
3336 15654 1.471684 GCTCCCTCAAAGTGATGCTTG 59.528 52.381 0.00 0.00 37.52 4.01
3341 15659 3.553508 CCCTCAAAGTGATGCTTGGTTTG 60.554 47.826 0.00 0.00 37.52 2.93
3347 16086 0.178967 TGATGCTTGGTTTGGCCTCA 60.179 50.000 3.32 0.00 38.35 3.86
3349 16088 1.551883 GATGCTTGGTTTGGCCTCATT 59.448 47.619 3.32 0.00 38.35 2.57
3355 16094 3.959535 TGGTTTGGCCTCATTCAAATC 57.040 42.857 3.32 0.00 35.66 2.17
3362 16101 3.448301 TGGCCTCATTCAAATCCATCAAC 59.552 43.478 3.32 0.00 0.00 3.18
3395 16134 1.759445 GATTCACTCTGCTCTGGCCTA 59.241 52.381 3.32 0.00 37.74 3.93
3419 16158 2.514824 GGAGCAGCCAACCGGATC 60.515 66.667 9.46 0.00 36.34 3.36
3424 16163 0.107654 GCAGCCAACCGGATCTAGTT 60.108 55.000 9.46 0.00 0.00 2.24
3430 16169 4.224370 AGCCAACCGGATCTAGTTAGAAAA 59.776 41.667 9.46 0.00 35.69 2.29
3439 16178 7.484959 CCGGATCTAGTTAGAAAATTTTGTTGC 59.515 37.037 8.47 1.18 35.69 4.17
3473 16212 7.637709 AAATTGTTTGATTTCTTTCGTAGCC 57.362 32.000 0.00 0.00 0.00 3.93
3478 16217 3.609853 TGATTTCTTTCGTAGCCTGCAT 58.390 40.909 0.00 0.00 0.00 3.96
3541 16280 5.189145 GGAGAACAACTATACCAGAGGGAAA 59.811 44.000 0.00 0.00 38.05 3.13
3602 16341 4.404185 AAAATAAAGTTCCAGGCTCCCT 57.596 40.909 0.00 0.00 0.00 4.20
3610 16349 0.105453 TCCAGGCTCCCTAGATCCAC 60.105 60.000 0.00 0.00 30.10 4.02
3611 16350 1.467678 CCAGGCTCCCTAGATCCACG 61.468 65.000 0.00 0.00 30.10 4.94
3612 16351 1.152440 AGGCTCCCTAGATCCACGG 60.152 63.158 0.00 0.00 30.10 4.94
3660 16399 9.330063 GATTGATCTGGTATTACACATTTGAGA 57.670 33.333 0.00 0.00 0.00 3.27
3685 16424 7.590279 AGTGTTTACCAGACCAAATATTTTCG 58.410 34.615 0.00 0.00 0.00 3.46
3686 16425 6.307077 GTGTTTACCAGACCAAATATTTTCGC 59.693 38.462 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1063 7722 0.106669 ATGGAGGAGGTCGTCGATGA 60.107 55.000 2.39 2.39 30.13 2.92
1094 7753 1.312371 GGCAATCAAGGCTTACCGCA 61.312 55.000 0.00 0.00 42.76 5.69
1116 7775 3.428316 CGAGCCTAAGAGAGTGGAGAAAC 60.428 52.174 0.00 0.00 0.00 2.78
1163 7872 5.800296 TCAGTCAATCCGGTCTAAATTGAA 58.200 37.500 14.99 0.64 40.14 2.69
1173 7882 4.395625 TCGTATAGATCAGTCAATCCGGT 58.604 43.478 0.00 0.00 0.00 5.28
1179 7888 4.448720 TCCCCTCGTATAGATCAGTCAA 57.551 45.455 0.00 0.00 0.00 3.18
1180 7889 4.659529 ATCCCCTCGTATAGATCAGTCA 57.340 45.455 0.00 0.00 0.00 3.41
1181 7890 6.885376 TCTTAATCCCCTCGTATAGATCAGTC 59.115 42.308 0.00 0.00 0.00 3.51
1357 8131 3.616219 ACGTCAGCCAGCCAAATTATTA 58.384 40.909 0.00 0.00 0.00 0.98
1365 8139 0.323087 TACTAGACGTCAGCCAGCCA 60.323 55.000 19.50 0.00 0.00 4.75
1532 10242 2.712087 TGGCCCTACTTGTACCTTTTCA 59.288 45.455 0.00 0.00 0.00 2.69
1533 10243 3.428413 TGGCCCTACTTGTACCTTTTC 57.572 47.619 0.00 0.00 0.00 2.29
1534 10244 3.332485 TCATGGCCCTACTTGTACCTTTT 59.668 43.478 0.00 0.00 0.00 2.27
1541 10251 2.578021 ACTGATTCATGGCCCTACTTGT 59.422 45.455 0.00 0.00 0.00 3.16
1576 10291 8.881743 CCTTCAGTTTGTGATTTCAAATTTTCA 58.118 29.630 0.00 0.00 39.09 2.69
1577 10292 8.337532 CCCTTCAGTTTGTGATTTCAAATTTTC 58.662 33.333 0.00 0.00 39.09 2.29
1578 10293 7.282901 CCCCTTCAGTTTGTGATTTCAAATTTT 59.717 33.333 0.00 0.00 39.09 1.82
1579 10294 6.767423 CCCCTTCAGTTTGTGATTTCAAATTT 59.233 34.615 0.00 0.00 39.09 1.82
1580 10295 6.290605 CCCCTTCAGTTTGTGATTTCAAATT 58.709 36.000 0.00 0.00 39.09 1.82
1581 10296 5.221702 CCCCCTTCAGTTTGTGATTTCAAAT 60.222 40.000 0.00 0.00 39.09 2.32
1582 10297 4.100808 CCCCCTTCAGTTTGTGATTTCAAA 59.899 41.667 0.00 0.00 34.17 2.69
1606 10321 8.004087 TCTACACCTTATATACACTGTTCCAC 57.996 38.462 0.00 0.00 0.00 4.02
1642 10357 4.274214 TGCGATTATGGCAAGATCTGAAAG 59.726 41.667 0.00 0.00 37.49 2.62
1698 10418 9.226606 AGTTCCATTTTCATTGAAATCTACGTA 57.773 29.630 12.39 0.00 31.34 3.57
1699 10419 8.023128 CAGTTCCATTTTCATTGAAATCTACGT 58.977 33.333 12.39 0.00 31.34 3.57
1700 10420 7.485913 CCAGTTCCATTTTCATTGAAATCTACG 59.514 37.037 12.39 1.03 31.34 3.51
1775 10497 6.451393 AGCTGAAGTAACACTGAAACTAGAG 58.549 40.000 0.00 0.00 0.00 2.43
1839 10692 2.370519 TGAGTTTAGCTGCACCCAAGTA 59.629 45.455 1.02 0.00 0.00 2.24
1840 10693 1.142870 TGAGTTTAGCTGCACCCAAGT 59.857 47.619 1.02 0.00 0.00 3.16
1841 10694 1.896220 TGAGTTTAGCTGCACCCAAG 58.104 50.000 1.02 0.00 0.00 3.61
1842 10695 2.356665 TTGAGTTTAGCTGCACCCAA 57.643 45.000 1.02 0.00 0.00 4.12
1843 10696 2.356665 TTTGAGTTTAGCTGCACCCA 57.643 45.000 1.02 0.00 0.00 4.51
1844 10697 2.360801 TGTTTTGAGTTTAGCTGCACCC 59.639 45.455 1.02 0.00 0.00 4.61
1845 10698 3.315191 TCTGTTTTGAGTTTAGCTGCACC 59.685 43.478 1.02 0.00 0.00 5.01
1846 10699 4.552166 TCTGTTTTGAGTTTAGCTGCAC 57.448 40.909 1.02 0.00 0.00 4.57
1847 10700 8.615211 CATATATCTGTTTTGAGTTTAGCTGCA 58.385 33.333 1.02 0.00 0.00 4.41
1848 10701 7.589221 GCATATATCTGTTTTGAGTTTAGCTGC 59.411 37.037 0.00 0.00 0.00 5.25
1849 10702 7.795734 CGCATATATCTGTTTTGAGTTTAGCTG 59.204 37.037 0.00 0.00 0.00 4.24
1850 10703 7.041780 CCGCATATATCTGTTTTGAGTTTAGCT 60.042 37.037 0.00 0.00 0.00 3.32
1851 10704 7.072030 CCGCATATATCTGTTTTGAGTTTAGC 58.928 38.462 0.00 0.00 0.00 3.09
1852 10705 8.142994 ACCGCATATATCTGTTTTGAGTTTAG 57.857 34.615 0.00 0.00 0.00 1.85
1853 10706 9.256477 CTACCGCATATATCTGTTTTGAGTTTA 57.744 33.333 0.00 0.00 0.00 2.01
1854 10707 7.985184 TCTACCGCATATATCTGTTTTGAGTTT 59.015 33.333 0.00 0.00 0.00 2.66
1855 10708 7.497595 TCTACCGCATATATCTGTTTTGAGTT 58.502 34.615 0.00 0.00 0.00 3.01
1856 10709 7.050970 TCTACCGCATATATCTGTTTTGAGT 57.949 36.000 0.00 0.00 0.00 3.41
1857 10710 8.539770 AATCTACCGCATATATCTGTTTTGAG 57.460 34.615 0.00 0.00 0.00 3.02
1858 10711 8.902540 AAATCTACCGCATATATCTGTTTTGA 57.097 30.769 0.00 0.00 0.00 2.69
1861 10714 9.383519 CCATAAATCTACCGCATATATCTGTTT 57.616 33.333 0.00 0.00 0.00 2.83
1862 10715 7.495934 GCCATAAATCTACCGCATATATCTGTT 59.504 37.037 0.00 0.00 0.00 3.16
1863 10716 6.986817 GCCATAAATCTACCGCATATATCTGT 59.013 38.462 0.00 0.00 0.00 3.41
1864 10717 6.144563 CGCCATAAATCTACCGCATATATCTG 59.855 42.308 0.00 0.00 0.00 2.90
1865 10718 6.183360 ACGCCATAAATCTACCGCATATATCT 60.183 38.462 0.00 0.00 0.00 1.98
1866 10719 5.983720 ACGCCATAAATCTACCGCATATATC 59.016 40.000 0.00 0.00 0.00 1.63
1867 10720 5.914033 ACGCCATAAATCTACCGCATATAT 58.086 37.500 0.00 0.00 0.00 0.86
1868 10721 5.333299 ACGCCATAAATCTACCGCATATA 57.667 39.130 0.00 0.00 0.00 0.86
1869 10722 4.202245 ACGCCATAAATCTACCGCATAT 57.798 40.909 0.00 0.00 0.00 1.78
1870 10723 3.671008 ACGCCATAAATCTACCGCATA 57.329 42.857 0.00 0.00 0.00 3.14
1871 10724 2.543777 ACGCCATAAATCTACCGCAT 57.456 45.000 0.00 0.00 0.00 4.73
1872 10725 2.319136 AACGCCATAAATCTACCGCA 57.681 45.000 0.00 0.00 0.00 5.69
1873 10726 3.064271 TCAAAACGCCATAAATCTACCGC 59.936 43.478 0.00 0.00 0.00 5.68
1874 10727 4.868450 TCAAAACGCCATAAATCTACCG 57.132 40.909 0.00 0.00 0.00 4.02
1875 10728 6.027749 CAGTTCAAAACGCCATAAATCTACC 58.972 40.000 0.00 0.00 36.23 3.18
1876 10729 6.837992 TCAGTTCAAAACGCCATAAATCTAC 58.162 36.000 0.00 0.00 36.23 2.59
1877 10730 7.441890 TTCAGTTCAAAACGCCATAAATCTA 57.558 32.000 0.00 0.00 36.23 1.98
1878 10731 5.957842 TCAGTTCAAAACGCCATAAATCT 57.042 34.783 0.00 0.00 36.23 2.40
1879 10732 7.359181 CCTTTTCAGTTCAAAACGCCATAAATC 60.359 37.037 0.00 0.00 36.23 2.17
1880 10733 6.423604 CCTTTTCAGTTCAAAACGCCATAAAT 59.576 34.615 0.00 0.00 36.23 1.40
1881 10734 5.751028 CCTTTTCAGTTCAAAACGCCATAAA 59.249 36.000 0.00 0.00 36.23 1.40
1882 10735 5.285651 CCTTTTCAGTTCAAAACGCCATAA 58.714 37.500 0.00 0.00 36.23 1.90
1883 10736 4.261825 CCCTTTTCAGTTCAAAACGCCATA 60.262 41.667 0.00 0.00 36.23 2.74
1884 10737 3.492482 CCCTTTTCAGTTCAAAACGCCAT 60.492 43.478 0.00 0.00 36.23 4.40
1885 10738 2.159170 CCCTTTTCAGTTCAAAACGCCA 60.159 45.455 0.00 0.00 36.23 5.69
1886 10739 2.469826 CCCTTTTCAGTTCAAAACGCC 58.530 47.619 0.00 0.00 36.23 5.68
1887 10740 2.469826 CCCCTTTTCAGTTCAAAACGC 58.530 47.619 0.00 0.00 36.23 4.84
1888 10741 2.469826 GCCCCTTTTCAGTTCAAAACG 58.530 47.619 0.00 0.00 36.23 3.60
1889 10742 2.169561 TGGCCCCTTTTCAGTTCAAAAC 59.830 45.455 0.00 0.00 0.00 2.43
1890 10743 2.472029 TGGCCCCTTTTCAGTTCAAAA 58.528 42.857 0.00 0.00 0.00 2.44
1891 10744 2.166907 TGGCCCCTTTTCAGTTCAAA 57.833 45.000 0.00 0.00 0.00 2.69
1892 10745 2.166907 TTGGCCCCTTTTCAGTTCAA 57.833 45.000 0.00 0.00 0.00 2.69
1893 10746 2.166907 TTTGGCCCCTTTTCAGTTCA 57.833 45.000 0.00 0.00 0.00 3.18
1894 10747 4.882842 TTATTTGGCCCCTTTTCAGTTC 57.117 40.909 0.00 0.00 0.00 3.01
1895 10748 5.841267 AATTATTTGGCCCCTTTTCAGTT 57.159 34.783 0.00 0.00 0.00 3.16
1896 10749 6.728632 TCTTAATTATTTGGCCCCTTTTCAGT 59.271 34.615 0.00 0.00 0.00 3.41
1897 10750 7.093333 ACTCTTAATTATTTGGCCCCTTTTCAG 60.093 37.037 0.00 0.00 0.00 3.02
1898 10751 6.728632 ACTCTTAATTATTTGGCCCCTTTTCA 59.271 34.615 0.00 0.00 0.00 2.69
1899 10752 7.182817 ACTCTTAATTATTTGGCCCCTTTTC 57.817 36.000 0.00 0.00 0.00 2.29
1900 10753 7.568128 AACTCTTAATTATTTGGCCCCTTTT 57.432 32.000 0.00 0.00 0.00 2.27
1901 10754 7.568128 AAACTCTTAATTATTTGGCCCCTTT 57.432 32.000 0.00 0.00 0.00 3.11
1902 10755 7.568128 AAAACTCTTAATTATTTGGCCCCTT 57.432 32.000 0.00 0.00 0.00 3.95
1903 10756 7.394016 CAAAAACTCTTAATTATTTGGCCCCT 58.606 34.615 0.00 0.00 0.00 4.79
1904 10757 6.597672 CCAAAAACTCTTAATTATTTGGCCCC 59.402 38.462 11.25 0.00 40.00 5.80
1905 10758 7.333423 GTCCAAAAACTCTTAATTATTTGGCCC 59.667 37.037 16.26 9.02 43.97 5.80
1906 10759 7.875554 TGTCCAAAAACTCTTAATTATTTGGCC 59.124 33.333 16.26 9.41 43.97 5.36
1907 10760 8.825667 TGTCCAAAAACTCTTAATTATTTGGC 57.174 30.769 16.26 13.03 43.97 4.52
1908 10761 9.981114 ACTGTCCAAAAACTCTTAATTATTTGG 57.019 29.630 15.42 15.42 45.06 3.28
1914 10767 9.797556 GTAACAACTGTCCAAAAACTCTTAATT 57.202 29.630 0.00 0.00 0.00 1.40
1915 10768 8.962679 TGTAACAACTGTCCAAAAACTCTTAAT 58.037 29.630 0.00 0.00 0.00 1.40
1916 10769 8.338072 TGTAACAACTGTCCAAAAACTCTTAA 57.662 30.769 0.00 0.00 0.00 1.85
1917 10770 7.925043 TGTAACAACTGTCCAAAAACTCTTA 57.075 32.000 0.00 0.00 0.00 2.10
1918 10771 6.827586 TGTAACAACTGTCCAAAAACTCTT 57.172 33.333 0.00 0.00 0.00 2.85
1919 10772 7.093945 ACAATGTAACAACTGTCCAAAAACTCT 60.094 33.333 0.00 0.00 0.00 3.24
1920 10773 7.009174 CACAATGTAACAACTGTCCAAAAACTC 59.991 37.037 0.00 0.00 0.00 3.01
1921 10774 6.811170 CACAATGTAACAACTGTCCAAAAACT 59.189 34.615 0.00 0.00 0.00 2.66
1922 10775 6.588373 ACACAATGTAACAACTGTCCAAAAAC 59.412 34.615 0.00 0.00 0.00 2.43
1923 10776 6.692486 ACACAATGTAACAACTGTCCAAAAA 58.308 32.000 0.00 0.00 0.00 1.94
1924 10777 6.071896 TGACACAATGTAACAACTGTCCAAAA 60.072 34.615 0.00 0.00 0.00 2.44
1925 10778 5.416013 TGACACAATGTAACAACTGTCCAAA 59.584 36.000 0.00 0.00 0.00 3.28
1926 10779 4.944317 TGACACAATGTAACAACTGTCCAA 59.056 37.500 0.00 0.00 0.00 3.53
1927 10780 4.518249 TGACACAATGTAACAACTGTCCA 58.482 39.130 0.00 0.00 0.00 4.02
1928 10781 4.554723 GCTGACACAATGTAACAACTGTCC 60.555 45.833 0.00 0.00 0.00 4.02
1929 10782 4.527564 GCTGACACAATGTAACAACTGTC 58.472 43.478 0.00 0.00 0.00 3.51
1930 10783 3.315191 GGCTGACACAATGTAACAACTGT 59.685 43.478 0.00 0.00 0.00 3.55
1931 10784 3.606846 CGGCTGACACAATGTAACAACTG 60.607 47.826 0.00 0.00 0.00 3.16
1932 10785 2.548057 CGGCTGACACAATGTAACAACT 59.452 45.455 0.00 0.00 0.00 3.16
1933 10786 2.289547 ACGGCTGACACAATGTAACAAC 59.710 45.455 0.00 0.00 0.00 3.32
1934 10787 2.289274 CACGGCTGACACAATGTAACAA 59.711 45.455 0.00 0.00 0.00 2.83
1935 10788 1.870402 CACGGCTGACACAATGTAACA 59.130 47.619 0.00 0.00 0.00 2.41
1936 10789 1.399727 GCACGGCTGACACAATGTAAC 60.400 52.381 0.00 0.00 0.00 2.50
1937 10790 0.871722 GCACGGCTGACACAATGTAA 59.128 50.000 0.00 0.00 0.00 2.41
1938 10791 0.250081 TGCACGGCTGACACAATGTA 60.250 50.000 0.00 0.00 0.00 2.29
1939 10792 1.509644 CTGCACGGCTGACACAATGT 61.510 55.000 0.00 0.00 0.00 2.71
1940 10793 1.208358 CTGCACGGCTGACACAATG 59.792 57.895 0.00 0.00 0.00 2.82
1941 10794 1.071299 TCTGCACGGCTGACACAAT 59.929 52.632 0.00 0.00 31.90 2.71
1942 10795 2.503546 TCTGCACGGCTGACACAA 59.496 55.556 0.00 0.00 31.90 3.33
1947 10800 2.653115 CTGAGTCTGCACGGCTGA 59.347 61.111 0.00 2.24 34.32 4.26
1948 10801 3.117171 GCTGAGTCTGCACGGCTG 61.117 66.667 16.35 0.00 35.21 4.85
1949 10802 2.460662 ATTGCTGAGTCTGCACGGCT 62.461 55.000 22.68 6.91 37.99 5.52
1950 10803 0.740868 TATTGCTGAGTCTGCACGGC 60.741 55.000 22.68 0.00 37.99 5.68
1951 10804 1.945387 ATATTGCTGAGTCTGCACGG 58.055 50.000 22.68 0.00 37.99 4.94
1952 10805 4.142838 TGAAAATATTGCTGAGTCTGCACG 60.143 41.667 22.68 0.00 37.99 5.34
1953 10806 5.122869 TCTGAAAATATTGCTGAGTCTGCAC 59.877 40.000 22.68 11.01 37.99 4.57
1954 10807 5.247862 TCTGAAAATATTGCTGAGTCTGCA 58.752 37.500 19.57 19.57 36.58 4.41
1955 10808 5.808042 TCTGAAAATATTGCTGAGTCTGC 57.192 39.130 14.60 14.60 0.00 4.26
1956 10809 8.549548 CAGTATCTGAAAATATTGCTGAGTCTG 58.450 37.037 0.00 0.00 32.44 3.51
1957 10810 8.481314 TCAGTATCTGAAAATATTGCTGAGTCT 58.519 33.333 0.00 0.00 37.57 3.24
1958 10811 8.654230 TCAGTATCTGAAAATATTGCTGAGTC 57.346 34.615 0.00 0.00 37.57 3.36
1959 10812 9.270640 GATCAGTATCTGAAAATATTGCTGAGT 57.729 33.333 3.58 0.00 44.04 3.41
1960 10813 8.719648 GGATCAGTATCTGAAAATATTGCTGAG 58.280 37.037 3.58 0.00 44.04 3.35
1961 10814 8.435187 AGGATCAGTATCTGAAAATATTGCTGA 58.565 33.333 3.58 0.00 44.04 4.26
1962 10815 8.618702 AGGATCAGTATCTGAAAATATTGCTG 57.381 34.615 3.58 0.00 44.04 4.41
1978 10831 9.987272 CAACATGAAGATACATTAGGATCAGTA 57.013 33.333 0.00 0.00 0.00 2.74
1979 10832 8.708378 TCAACATGAAGATACATTAGGATCAGT 58.292 33.333 0.00 0.00 0.00 3.41
1980 10833 9.551734 TTCAACATGAAGATACATTAGGATCAG 57.448 33.333 0.00 0.00 31.83 2.90
1981 10834 9.330063 GTTCAACATGAAGATACATTAGGATCA 57.670 33.333 0.00 0.00 37.00 2.92
1982 10835 9.553064 AGTTCAACATGAAGATACATTAGGATC 57.447 33.333 0.00 0.00 37.00 3.36
1983 10836 9.553064 GAGTTCAACATGAAGATACATTAGGAT 57.447 33.333 0.00 0.00 37.00 3.24
1984 10837 7.987458 GGAGTTCAACATGAAGATACATTAGGA 59.013 37.037 0.00 0.00 37.00 2.94
1985 10838 7.042456 CGGAGTTCAACATGAAGATACATTAGG 60.042 40.741 0.00 0.00 37.00 2.69
1986 10839 7.517417 GCGGAGTTCAACATGAAGATACATTAG 60.517 40.741 0.00 0.00 37.00 1.73
1987 10840 6.257849 GCGGAGTTCAACATGAAGATACATTA 59.742 38.462 0.00 0.00 37.00 1.90
1988 10841 5.065218 GCGGAGTTCAACATGAAGATACATT 59.935 40.000 0.00 0.00 37.00 2.71
1989 10842 4.572389 GCGGAGTTCAACATGAAGATACAT 59.428 41.667 0.00 0.00 37.00 2.29
1990 10843 3.932710 GCGGAGTTCAACATGAAGATACA 59.067 43.478 0.00 0.00 37.00 2.29
1991 10844 3.932710 TGCGGAGTTCAACATGAAGATAC 59.067 43.478 0.00 0.00 37.00 2.24
1992 10845 4.183865 CTGCGGAGTTCAACATGAAGATA 58.816 43.478 0.00 0.00 37.00 1.98
1993 10846 3.005554 CTGCGGAGTTCAACATGAAGAT 58.994 45.455 0.00 0.00 37.00 2.40
1994 10847 2.416747 CTGCGGAGTTCAACATGAAGA 58.583 47.619 0.00 0.00 37.00 2.87
1995 10848 1.135859 GCTGCGGAGTTCAACATGAAG 60.136 52.381 5.62 0.00 37.00 3.02
1996 10849 0.874390 GCTGCGGAGTTCAACATGAA 59.126 50.000 5.62 0.00 33.32 2.57
1997 10850 0.035317 AGCTGCGGAGTTCAACATGA 59.965 50.000 5.62 0.00 0.00 3.07
1998 10851 1.725641 TAGCTGCGGAGTTCAACATG 58.274 50.000 5.62 0.00 0.00 3.21
1999 10852 2.283298 CATAGCTGCGGAGTTCAACAT 58.717 47.619 5.62 0.00 0.00 2.71
2000 10853 1.001974 ACATAGCTGCGGAGTTCAACA 59.998 47.619 5.62 0.00 0.00 3.33
2001 10854 1.726853 ACATAGCTGCGGAGTTCAAC 58.273 50.000 5.62 0.00 0.00 3.18
2002 10855 2.289382 TGAACATAGCTGCGGAGTTCAA 60.289 45.455 23.89 13.65 43.71 2.69
2003 10856 1.275010 TGAACATAGCTGCGGAGTTCA 59.725 47.619 22.97 22.97 44.25 3.18
2004 10857 1.929836 CTGAACATAGCTGCGGAGTTC 59.070 52.381 19.68 19.68 39.11 3.01
2005 10858 1.276421 ACTGAACATAGCTGCGGAGTT 59.724 47.619 5.62 1.12 0.00 3.01
2006 10859 0.898320 ACTGAACATAGCTGCGGAGT 59.102 50.000 5.62 0.00 0.00 3.85
2007 10860 1.662629 CAACTGAACATAGCTGCGGAG 59.337 52.381 0.00 0.00 0.00 4.63
2008 10861 1.001974 ACAACTGAACATAGCTGCGGA 59.998 47.619 0.00 0.00 0.00 5.54
2009 10862 1.442769 ACAACTGAACATAGCTGCGG 58.557 50.000 0.00 0.00 0.00 5.69
2010 10863 3.679980 AGTAACAACTGAACATAGCTGCG 59.320 43.478 0.00 0.00 0.00 5.18
2011 10864 5.613358 AAGTAACAACTGAACATAGCTGC 57.387 39.130 0.00 0.00 0.00 5.25
2012 10865 7.097192 TCCTAAGTAACAACTGAACATAGCTG 58.903 38.462 0.00 0.00 0.00 4.24
2013 10866 7.241042 TCCTAAGTAACAACTGAACATAGCT 57.759 36.000 0.00 0.00 0.00 3.32
2014 10867 6.036191 GCTCCTAAGTAACAACTGAACATAGC 59.964 42.308 0.00 0.00 0.00 2.97
2015 10868 7.097192 TGCTCCTAAGTAACAACTGAACATAG 58.903 38.462 0.00 0.00 0.00 2.23
2016 10869 6.999950 TGCTCCTAAGTAACAACTGAACATA 58.000 36.000 0.00 0.00 0.00 2.29
2017 10870 5.865085 TGCTCCTAAGTAACAACTGAACAT 58.135 37.500 0.00 0.00 0.00 2.71
2018 10871 5.284861 TGCTCCTAAGTAACAACTGAACA 57.715 39.130 0.00 0.00 0.00 3.18
2019 10872 4.152580 GCTGCTCCTAAGTAACAACTGAAC 59.847 45.833 0.00 0.00 0.00 3.18
2020 10873 4.040461 AGCTGCTCCTAAGTAACAACTGAA 59.960 41.667 0.00 0.00 0.00 3.02
2021 10874 3.578716 AGCTGCTCCTAAGTAACAACTGA 59.421 43.478 0.00 0.00 0.00 3.41
2022 10875 3.931578 AGCTGCTCCTAAGTAACAACTG 58.068 45.455 0.00 0.00 0.00 3.16
2023 10876 5.740290 TTAGCTGCTCCTAAGTAACAACT 57.260 39.130 4.91 0.00 0.00 3.16
2024 10877 5.932883 AGTTTAGCTGCTCCTAAGTAACAAC 59.067 40.000 4.91 0.00 0.00 3.32
2025 10878 6.110411 AGTTTAGCTGCTCCTAAGTAACAA 57.890 37.500 4.91 0.00 0.00 2.83
2026 10879 5.245301 TGAGTTTAGCTGCTCCTAAGTAACA 59.755 40.000 4.91 0.00 0.00 2.41
2027 10880 5.721232 TGAGTTTAGCTGCTCCTAAGTAAC 58.279 41.667 4.91 1.13 0.00 2.50
2028 10881 5.995565 TGAGTTTAGCTGCTCCTAAGTAA 57.004 39.130 4.91 0.00 0.00 2.24
2259 11125 1.887956 GCCTGGTGAGAAATCTTGGCA 60.888 52.381 0.00 0.00 38.99 4.92
2365 11238 2.187958 CTGGAGTACTGGTTGGATCCA 58.812 52.381 11.44 11.44 35.60 3.41
2385 11258 0.827368 CTCAGGGTACTCTTCCAGCC 59.173 60.000 0.00 0.00 0.00 4.85
2401 11274 2.691771 GCAGTCGCTCTCGTCCTCA 61.692 63.158 0.00 0.00 36.96 3.86
2434 11313 4.129737 ATGTCCTCGTCGCCGGTG 62.130 66.667 9.28 9.28 33.95 4.94
2526 14261 5.912528 ACTCAACGAAATTTACACGATGAC 58.087 37.500 6.62 0.00 34.92 3.06
2533 14276 7.227711 TCTCATGGAAACTCAACGAAATTTACA 59.772 33.333 0.00 0.00 29.71 2.41
2545 14288 5.434408 CCAAGATCATCTCATGGAAACTCA 58.566 41.667 0.00 0.00 44.02 3.41
2548 14291 3.887716 CCCCAAGATCATCTCATGGAAAC 59.112 47.826 6.93 0.00 44.02 2.78
2554 14297 2.415624 TCAGCCCCAAGATCATCTCAT 58.584 47.619 0.00 0.00 0.00 2.90
2581 14339 1.068472 AGGTACGTCACTGAAAGAGCG 60.068 52.381 0.00 0.00 37.43 5.03
2583 14341 2.557056 TCCAGGTACGTCACTGAAAGAG 59.443 50.000 17.96 4.30 36.86 2.85
2588 14347 1.884579 GTTCTCCAGGTACGTCACTGA 59.115 52.381 17.96 6.30 36.86 3.41
2619 14378 0.601841 GAACCCGAACACGGTGATGT 60.602 55.000 16.29 0.00 44.59 3.06
2709 14510 1.051812 CTGGCTGGGAAGGACGATAT 58.948 55.000 0.00 0.00 0.00 1.63
2754 14565 0.875474 CAAACGGGGCAACAGCAAAG 60.875 55.000 0.00 0.00 39.74 2.77
2757 14568 1.523154 GATCAAACGGGGCAACAGCA 61.523 55.000 0.00 0.00 39.74 4.41
2758 14569 1.212751 GATCAAACGGGGCAACAGC 59.787 57.895 0.00 0.00 39.74 4.40
2759 14570 0.609131 AGGATCAAACGGGGCAACAG 60.609 55.000 0.00 0.00 39.74 3.16
2760 14571 0.178975 AAGGATCAAACGGGGCAACA 60.179 50.000 0.00 0.00 39.74 3.33
2761 14572 0.243636 CAAGGATCAAACGGGGCAAC 59.756 55.000 0.00 0.00 0.00 4.17
2850 14685 4.159321 ACACAACCATCACACAAAATCACA 59.841 37.500 0.00 0.00 0.00 3.58
2851 14686 4.681744 ACACAACCATCACACAAAATCAC 58.318 39.130 0.00 0.00 0.00 3.06
2852 14687 4.998671 ACACAACCATCACACAAAATCA 57.001 36.364 0.00 0.00 0.00 2.57
2886 14726 3.310774 CCTTACATCCACGAGCAATCAAG 59.689 47.826 0.00 0.00 0.00 3.02
2958 14821 6.262273 ACAACCCGATATTATAAACCTGCAAG 59.738 38.462 0.00 0.00 0.00 4.01
2990 14860 8.405418 TGTAAGACTTACTCTACAACTGATGT 57.595 34.615 22.65 0.00 40.18 3.06
3028 14902 6.210796 GCCGTTGTAGAACAAAAATAAAGGT 58.789 36.000 3.42 0.00 40.15 3.50
3048 14922 1.684049 CAGGAGAGAGGAAGGCCGT 60.684 63.158 0.00 0.00 39.96 5.68
3091 14984 8.536175 TGTACAGATGAAATACCAACTCATACA 58.464 33.333 0.00 0.00 29.97 2.29
3145 15043 8.917414 ACCACTATTATATGTACCATCCTCAT 57.083 34.615 0.00 0.00 0.00 2.90
3194 15092 1.999648 AGGATGCACACAACCAACAT 58.000 45.000 0.00 0.00 41.12 2.71
3223 15121 0.465705 ATGAGCATACACCCGGTCTG 59.534 55.000 0.00 0.00 0.00 3.51
3226 15124 0.618458 ACAATGAGCATACACCCGGT 59.382 50.000 0.00 0.00 0.00 5.28
3307 15625 3.192212 CACTTTGAGGGAGCTTTGATTCC 59.808 47.826 0.00 0.00 0.00 3.01
3335 15653 2.566724 GGATTTGAATGAGGCCAAACCA 59.433 45.455 5.01 0.00 43.14 3.67
3336 15654 2.566724 TGGATTTGAATGAGGCCAAACC 59.433 45.455 5.01 0.00 35.42 3.27
3341 15659 3.181472 GGTTGATGGATTTGAATGAGGCC 60.181 47.826 0.00 0.00 0.00 5.19
3347 16086 4.440525 GCGACATGGTTGATGGATTTGAAT 60.441 41.667 0.00 0.00 36.23 2.57
3349 16088 2.423185 GCGACATGGTTGATGGATTTGA 59.577 45.455 0.00 0.00 36.23 2.69
3355 16094 3.101209 CGGCGACATGGTTGATGG 58.899 61.111 0.00 0.00 36.23 3.51
3362 16101 3.640000 GAATCCGCGGCGACATGG 61.640 66.667 25.92 6.60 0.00 3.66
3403 16142 0.249657 CTAGATCCGGTTGGCTGCTC 60.250 60.000 0.00 0.00 34.14 4.26
3424 16163 6.581712 AGCCTCAAAGCAACAAAATTTTCTA 58.418 32.000 0.00 0.00 34.23 2.10
3430 16169 6.767423 ACAATTTAGCCTCAAAGCAACAAAAT 59.233 30.769 0.00 0.00 34.23 1.82
3439 16178 8.822652 AGAAATCAAACAATTTAGCCTCAAAG 57.177 30.769 0.00 0.00 0.00 2.77
3602 16341 2.917933 CAATTTGGCTCCGTGGATCTA 58.082 47.619 0.00 0.00 0.00 1.98
3655 16394 4.764050 TTGGTCTGGTAAACACTCTCAA 57.236 40.909 0.00 0.00 0.00 3.02
3660 16399 7.590279 CGAAAATATTTGGTCTGGTAAACACT 58.410 34.615 0.39 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.