Multiple sequence alignment - TraesCS7A01G389500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G389500 chr7A 100.000 4208 0 0 1 4208 566007145 566011352 0.000000e+00 7771
1 TraesCS7A01G389500 chr7A 80.413 1501 249 37 886 2373 566017724 566019192 0.000000e+00 1101
2 TraesCS7A01G389500 chr7A 82.003 639 100 10 2645 3273 566019513 566020146 2.880000e-146 529
3 TraesCS7A01G389500 chr7D 95.958 4033 137 14 1 4019 499971028 499975048 0.000000e+00 6521
4 TraesCS7A01G389500 chr7D 78.583 1919 317 65 493 2374 500098177 500100038 0.000000e+00 1181
5 TraesCS7A01G389500 chr7D 81.847 639 101 11 2645 3273 500100358 500100991 1.340000e-144 523
6 TraesCS7A01G389500 chr7D 93.373 166 11 0 4043 4208 499975043 499975208 3.250000e-61 246
7 TraesCS7A01G389500 chr7B 95.486 4010 151 17 34 4029 527961294 527965287 0.000000e+00 6375
8 TraesCS7A01G389500 chr7B 78.138 1912 336 61 493 2373 527979145 527981005 0.000000e+00 1140
9 TraesCS7A01G389500 chr7B 81.847 639 101 11 2645 3273 527981326 527981959 1.340000e-144 523
10 TraesCS7A01G389500 chr7B 93.388 121 7 1 4088 4208 527965302 527965421 1.200000e-40 178
11 TraesCS7A01G389500 chr2B 92.248 387 23 7 8 390 769913373 769912990 3.700000e-150 542
12 TraesCS7A01G389500 chr1B 92.228 386 24 6 8 389 511375233 511375616 3.700000e-150 542
13 TraesCS7A01G389500 chr3A 92.208 385 24 6 8 389 193998947 193999328 1.330000e-149 540
14 TraesCS7A01G389500 chr5B 91.969 386 24 7 8 389 608860532 608860150 6.190000e-148 534
15 TraesCS7A01G389500 chr5A 91.969 386 24 7 8 389 519675286 519675668 6.190000e-148 534
16 TraesCS7A01G389500 chr2A 91.710 386 26 6 8 389 214687843 214687460 8.010000e-147 531
17 TraesCS7A01G389500 chr4B 91.710 386 24 8 8 389 42535188 42535569 2.880000e-146 529


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G389500 chr7A 566007145 566011352 4207 False 7771.0 7771 100.0000 1 4208 1 chr7A.!!$F1 4207
1 TraesCS7A01G389500 chr7A 566017724 566020146 2422 False 815.0 1101 81.2080 886 3273 2 chr7A.!!$F2 2387
2 TraesCS7A01G389500 chr7D 499971028 499975208 4180 False 3383.5 6521 94.6655 1 4208 2 chr7D.!!$F1 4207
3 TraesCS7A01G389500 chr7D 500098177 500100991 2814 False 852.0 1181 80.2150 493 3273 2 chr7D.!!$F2 2780
4 TraesCS7A01G389500 chr7B 527961294 527965421 4127 False 3276.5 6375 94.4370 34 4208 2 chr7B.!!$F1 4174
5 TraesCS7A01G389500 chr7B 527979145 527981959 2814 False 831.5 1140 79.9925 493 3273 2 chr7B.!!$F2 2780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.030504 CTGCCGCAATTGTGTGTTCA 59.969 50.0 17.34 8.73 33.1 3.18 F
1149 1180 0.036388 GTCCAGTTTCTCCGCATCCA 60.036 55.0 0.00 0.00 0.0 3.41 F
1796 1832 0.381801 CAGCCGTGCTTGAGTTTGTT 59.618 50.0 0.00 0.00 36.4 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2025 0.390866 AGAGCAACACAGCTGATCGG 60.391 55.0 23.35 9.22 46.75 4.18 R
2894 3007 0.108281 GTACCTTCTGACCCCTTCGC 60.108 60.0 0.00 0.00 0.00 4.70 R
3745 3862 0.323360 TCCCACTGGCCATTGTTAGC 60.323 55.0 20.56 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.442526 CTCGATTGTGATGCCCAGGC 61.443 60.000 0.38 0.38 42.35 4.85
28 29 2.484062 CGATTGTGATGCCCAGGCC 61.484 63.158 6.14 0.00 41.09 5.19
51 52 0.030504 CTGCCGCAATTGTGTGTTCA 59.969 50.000 17.34 8.73 33.10 3.18
94 95 8.641498 AAATCATACATCAGTTTTGTCTTCCT 57.359 30.769 0.00 0.00 0.00 3.36
155 156 6.698766 AGCATAAAACTGAGTTCTTTTTGCTG 59.301 34.615 19.62 7.01 35.19 4.41
199 200 3.512329 TCGTAGTAATCCTGTGCCTTTCA 59.488 43.478 0.00 0.00 0.00 2.69
220 221 6.389622 TCATATTTGCATACTAATCGCGAC 57.610 37.500 12.93 0.00 0.00 5.19
262 263 5.934935 AATTTTGAATTGCTTTGGCTCTG 57.065 34.783 0.00 0.00 39.59 3.35
355 356 5.427036 AGGTGTAACGTGGTAAATTTGTG 57.573 39.130 0.00 0.00 38.12 3.33
381 382 3.242518 CAAGCAGCATGACATTCTTGTG 58.757 45.455 0.00 0.00 39.69 3.33
410 419 6.176896 TCTTGATGAATCCGGTGTATTTGAA 58.823 36.000 0.00 0.00 0.00 2.69
425 436 5.593909 TGTATTTGAATGACATGGATCACCC 59.406 40.000 0.00 0.00 34.81 4.61
430 441 1.114627 TGACATGGATCACCCTCTCG 58.885 55.000 0.00 0.00 35.38 4.04
436 447 1.118356 GGATCACCCTCTCGGCTGAT 61.118 60.000 0.00 0.00 36.00 2.90
536 547 2.795231 TCTCAGGCATTCCTTTCCTG 57.205 50.000 1.29 1.29 46.60 3.86
563 575 1.966451 GCGGACTTTGGGGACACAG 60.966 63.158 0.00 0.00 43.85 3.66
618 631 3.751518 TCTGATCATCAAGATGGCATGG 58.248 45.455 3.81 0.00 39.24 3.66
686 715 2.093625 TCGTGCAATCATACACTTTCGC 59.906 45.455 0.00 0.00 34.58 4.70
703 732 7.224753 ACACTTTCGCATATAATAAGGTCACAG 59.775 37.037 0.00 0.00 0.00 3.66
762 792 4.220821 TCTGTCGAGCAAGAACTATTTCCT 59.779 41.667 0.00 0.00 31.28 3.36
765 795 4.804665 GTCGAGCAAGAACTATTTCCTACC 59.195 45.833 0.00 0.00 31.28 3.18
929 960 5.670485 TGAAAAGAGAGACTGCACTTTGTA 58.330 37.500 0.00 0.00 33.72 2.41
942 973 7.394816 ACTGCACTTTGTATTAACACTATCCT 58.605 34.615 0.00 0.00 34.61 3.24
1149 1180 0.036388 GTCCAGTTTCTCCGCATCCA 60.036 55.000 0.00 0.00 0.00 3.41
1230 1261 8.212259 AGGTATTGGAGCTCTTATGAATGTAT 57.788 34.615 14.64 0.00 0.00 2.29
1253 1284 6.757897 TTCCTAGACATCATTTTCGCATTT 57.242 33.333 0.00 0.00 0.00 2.32
1396 1427 2.434702 ACTGATAACTCAACCGGGGATC 59.565 50.000 6.32 0.00 0.00 3.36
1455 1486 1.765230 TTGTGGTAAGGGCGTTGTTT 58.235 45.000 2.08 0.00 0.00 2.83
1468 1499 3.243401 GGCGTTGTTTGAGAAATCTTGGT 60.243 43.478 0.00 0.00 0.00 3.67
1796 1832 0.381801 CAGCCGTGCTTGAGTTTGTT 59.618 50.000 0.00 0.00 36.40 2.83
1868 1904 2.371510 GAGCTCAGATGCCCCTCTTAAT 59.628 50.000 9.40 0.00 0.00 1.40
1869 1905 2.782341 AGCTCAGATGCCCCTCTTAATT 59.218 45.455 0.00 0.00 0.00 1.40
1916 1952 6.039616 GGACTTGAGAAGTATACTGAAGCAG 58.960 44.000 6.06 3.42 43.03 4.24
1989 2025 6.444633 TGAGCACAAGTTACTACACTTAGTC 58.555 40.000 0.00 0.00 39.43 2.59
2102 2140 9.032624 AGAAGTAAAATACTGTTCAGGCTACTA 57.967 33.333 4.82 0.00 39.39 1.82
2118 2156 6.203723 CAGGCTACTAGTGCTTATTGGAAATC 59.796 42.308 5.39 0.00 0.00 2.17
2133 2171 7.961325 ATTGGAAATCACCACATTTGTAAAC 57.039 32.000 0.00 0.00 39.85 2.01
2223 2262 4.019591 AGTTCAATCCTGTTGGGTAGGTAC 60.020 45.833 0.00 0.00 36.67 3.34
2300 2340 4.930963 TGATTACCAAGTTTGTGCTTGTG 58.069 39.130 5.30 0.62 43.03 3.33
2423 2471 7.750229 ATGTTGACAAGTAAGAATCACATGT 57.250 32.000 0.00 0.00 31.02 3.21
2424 2472 7.566760 TGTTGACAAGTAAGAATCACATGTT 57.433 32.000 0.00 0.00 28.68 2.71
2477 2567 2.877168 GCTCCTAATGTGCTGATTCCAG 59.123 50.000 0.00 0.00 43.22 3.86
2532 2622 3.004106 ACATGACAGAAAAGTTGCAGCTC 59.996 43.478 2.60 0.00 0.00 4.09
2804 2913 3.301906 CACTTGTCGCAGAGTAAGAATCG 59.698 47.826 0.00 0.00 36.95 3.34
2894 3007 0.037303 ATGCAACCAGTGGTCAGGAG 59.963 55.000 17.06 4.86 33.12 3.69
2913 3026 0.108281 GCGAAGGGGTCAGAAGGTAC 60.108 60.000 0.00 0.00 0.00 3.34
2956 3069 4.445452 AACATGAAGCATTACAAGCAGG 57.555 40.909 0.00 0.00 0.00 4.85
2960 3073 1.541147 GAAGCATTACAAGCAGGCACA 59.459 47.619 0.00 0.00 0.00 4.57
3378 3495 9.601971 CTAGAGAGTAAACTACGATCAAATAGC 57.398 37.037 0.00 0.00 0.00 2.97
3380 3497 7.068348 AGAGAGTAAACTACGATCAAATAGCCA 59.932 37.037 0.00 0.00 0.00 4.75
3419 3536 5.620738 TTATCCAGCATATCCTATGGAGC 57.379 43.478 0.00 0.00 44.67 4.70
3433 3550 5.652014 TCCTATGGAGCAAGTACCAAAAATG 59.348 40.000 0.00 0.00 39.69 2.32
3540 3657 1.039856 ACACTGGGTTTTGTGGATGC 58.960 50.000 0.00 0.00 38.39 3.91
3581 3698 3.951037 TGAAGGCTTAAAGCTGTTGTGAA 59.049 39.130 0.00 0.00 41.99 3.18
3582 3699 4.400884 TGAAGGCTTAAAGCTGTTGTGAAA 59.599 37.500 0.00 0.00 41.99 2.69
3612 3729 6.392354 ACATTACTCTGTTTGGCAAATCATG 58.608 36.000 16.74 9.14 0.00 3.07
3634 3751 5.419542 TGCTGTAGTGAAAGGCTGTTATAG 58.580 41.667 0.00 0.00 0.00 1.31
3635 3752 5.186992 TGCTGTAGTGAAAGGCTGTTATAGA 59.813 40.000 0.00 0.00 0.00 1.98
3636 3753 5.751028 GCTGTAGTGAAAGGCTGTTATAGAG 59.249 44.000 0.00 0.00 0.00 2.43
3637 3754 5.661458 TGTAGTGAAAGGCTGTTATAGAGC 58.339 41.667 0.00 0.00 35.57 4.09
3639 3756 4.764172 AGTGAAAGGCTGTTATAGAGCTG 58.236 43.478 0.00 0.00 36.63 4.24
3640 3757 4.223923 AGTGAAAGGCTGTTATAGAGCTGT 59.776 41.667 0.00 0.00 36.63 4.40
3641 3758 4.568760 GTGAAAGGCTGTTATAGAGCTGTC 59.431 45.833 0.00 3.06 36.63 3.51
3642 3759 4.222810 TGAAAGGCTGTTATAGAGCTGTCA 59.777 41.667 0.00 4.96 36.63 3.58
3784 3901 1.848652 AGGCTCTTAGGTAGACGCAA 58.151 50.000 0.00 0.00 32.19 4.85
3789 3906 0.989890 CTTAGGTAGACGCAACGTGC 59.010 55.000 0.00 0.00 41.37 5.34
3888 4005 6.071165 CCCTATCCCATTCTTGGCATTTTATC 60.071 42.308 0.00 0.00 42.15 1.75
4010 4127 1.553248 ACCGTGCATGTGTGGTATACT 59.447 47.619 4.96 0.00 31.60 2.12
4021 4138 9.219603 GCATGTGTGGTATACTATAATCAACAT 57.780 33.333 2.25 2.49 0.00 2.71
4023 4140 9.725019 ATGTGTGGTATACTATAATCAACATGG 57.275 33.333 2.25 0.00 0.00 3.66
4024 4141 8.710239 TGTGTGGTATACTATAATCAACATGGT 58.290 33.333 2.25 0.00 0.00 3.55
4025 4142 8.988934 GTGTGGTATACTATAATCAACATGGTG 58.011 37.037 3.69 3.69 0.00 4.17
4026 4143 8.929487 TGTGGTATACTATAATCAACATGGTGA 58.071 33.333 17.41 17.41 0.00 4.02
4027 4144 9.944376 GTGGTATACTATAATCAACATGGTGAT 57.056 33.333 20.78 20.78 40.01 3.06
4036 4153 6.530019 AATCAACATGGTGATTTTACTCCC 57.470 37.500 29.34 0.00 44.09 4.30
4037 4154 4.340617 TCAACATGGTGATTTTACTCCCC 58.659 43.478 10.05 0.00 0.00 4.81
4038 4155 4.085733 CAACATGGTGATTTTACTCCCCA 58.914 43.478 4.15 0.00 0.00 4.96
4039 4156 4.396357 ACATGGTGATTTTACTCCCCAA 57.604 40.909 0.00 0.00 0.00 4.12
4040 4157 4.746466 ACATGGTGATTTTACTCCCCAAA 58.254 39.130 0.00 0.00 0.00 3.28
4041 4158 5.151454 ACATGGTGATTTTACTCCCCAAAA 58.849 37.500 0.00 0.00 0.00 2.44
4042 4159 5.604650 ACATGGTGATTTTACTCCCCAAAAA 59.395 36.000 0.00 0.00 0.00 1.94
4072 4189 6.828273 ACATGATGATTAGTCCGATTTTTCCA 59.172 34.615 0.00 0.00 0.00 3.53
4095 4212 1.136336 CGAAGTTGGTTTAGCGAGCAC 60.136 52.381 0.00 0.00 0.00 4.40
4097 4214 1.512926 AGTTGGTTTAGCGAGCACTG 58.487 50.000 0.00 0.00 0.00 3.66
4098 4215 1.202651 AGTTGGTTTAGCGAGCACTGT 60.203 47.619 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.036098 CAGGCCTGGGCATCACAA 59.964 61.111 26.14 0.00 44.11 3.33
27 28 1.210931 CACAATTGCGGCAGACAGG 59.789 57.895 5.05 0.00 0.00 4.00
28 29 0.386352 CACACAATTGCGGCAGACAG 60.386 55.000 5.05 0.00 0.00 3.51
51 52 5.012239 TGATTTTCTAACCTCAGCAGCAAT 58.988 37.500 0.00 0.00 0.00 3.56
94 95 4.890088 AGCAGAAACTACCGTACAATTGA 58.110 39.130 13.59 0.00 0.00 2.57
199 200 4.630069 GGGTCGCGATTAGTATGCAAATAT 59.370 41.667 14.06 0.00 0.00 1.28
220 221 7.410120 AAATTTAGCATTCTGAAGGTAAGGG 57.590 36.000 3.85 0.00 0.00 3.95
355 356 0.245539 ATGTCATGCTGCTTGTTGCC 59.754 50.000 14.21 3.75 42.00 4.52
371 372 6.395426 TCATCAAGAAAAGCACAAGAATGT 57.605 33.333 0.00 0.00 41.61 2.71
381 382 3.191371 ACACCGGATTCATCAAGAAAAGC 59.809 43.478 9.46 0.00 40.22 3.51
410 419 1.690893 CGAGAGGGTGATCCATGTCAT 59.309 52.381 0.00 0.00 37.61 3.06
425 436 0.247460 TGGTTCACATCAGCCGAGAG 59.753 55.000 0.00 0.00 0.00 3.20
536 547 0.958876 CCAAAGTCCGCCTAACCACC 60.959 60.000 0.00 0.00 0.00 4.61
563 575 4.853924 ATGGTTCACTTCACACCAAATC 57.146 40.909 0.00 0.00 43.85 2.17
703 732 6.036470 GCTGCATTATTACAGGAGAAAAACC 58.964 40.000 0.00 0.00 34.38 3.27
762 792 6.433847 TTTGGATTTCTCTCTCTGTTGGTA 57.566 37.500 0.00 0.00 0.00 3.25
765 795 4.758674 TGCTTTGGATTTCTCTCTCTGTTG 59.241 41.667 0.00 0.00 0.00 3.33
830 860 2.155155 GTCTCTTAACAAGACGCCGTTG 59.845 50.000 0.00 0.00 34.33 4.10
929 960 4.017499 AGGGGTGCAAAGGATAGTGTTAAT 60.017 41.667 0.00 0.00 0.00 1.40
942 973 1.422531 ATTTTCTGCAGGGGTGCAAA 58.577 45.000 15.13 2.68 44.88 3.68
1149 1180 4.878397 GCCTCTGACTTGCACATAGTAAAT 59.122 41.667 0.00 0.00 0.00 1.40
1212 1243 8.032451 GTCTAGGAATACATTCATAAGAGCTCC 58.968 40.741 10.93 0.00 38.53 4.70
1230 1261 6.374053 TCAAATGCGAAAATGATGTCTAGGAA 59.626 34.615 0.00 0.00 0.00 3.36
1253 1284 7.434897 GCATTTTATCACGGAAGCATAAATTCA 59.565 33.333 0.00 0.00 32.42 2.57
1396 1427 4.074970 AGTATTGGTTGCCTTGTCTTCTG 58.925 43.478 0.00 0.00 0.00 3.02
1455 1486 4.420206 TCTCAGAGGACCAAGATTTCTCA 58.580 43.478 0.00 0.00 0.00 3.27
1468 1499 5.541484 TCAGCTATGCATAAATCTCAGAGGA 59.459 40.000 8.00 0.00 0.00 3.71
1796 1832 1.964933 TGACGTCCTGTGTGGTGATAA 59.035 47.619 14.12 0.00 37.07 1.75
1884 1920 6.952358 AGTATACTTCTCAAGTCCCAAGTGTA 59.048 38.462 0.00 0.00 41.77 2.90
1916 1952 6.921857 GGTTCCCTAGAAAGTAAAGCAAAAAC 59.078 38.462 0.00 0.00 32.58 2.43
1989 2025 0.390866 AGAGCAACACAGCTGATCGG 60.391 55.000 23.35 9.22 46.75 4.18
2102 2140 4.406456 TGTGGTGATTTCCAATAAGCACT 58.594 39.130 14.45 0.00 39.39 4.40
2118 2156 7.556275 AGTCCCATATAGTTTACAAATGTGGTG 59.444 37.037 0.00 0.00 31.85 4.17
2133 2171 9.265862 AGGAAGAGATAAATCAGTCCCATATAG 57.734 37.037 0.00 0.00 0.00 1.31
2184 2223 8.307483 AGGATTGAACTCATGAATACCTATACG 58.693 37.037 0.00 0.00 0.00 3.06
2185 2224 9.429359 CAGGATTGAACTCATGAATACCTATAC 57.571 37.037 0.00 0.00 0.00 1.47
2193 2232 4.708421 CCCAACAGGATTGAACTCATGAAT 59.292 41.667 0.00 0.00 38.24 2.57
2223 2262 5.408356 ACACATTAGCAGTCGTAGTAAAGG 58.592 41.667 0.00 0.00 0.00 3.11
2292 2332 2.514205 AGATGCAAAACCACAAGCAC 57.486 45.000 0.00 0.00 40.14 4.40
2300 2340 0.599728 TTGCCGCAAGATGCAAAACC 60.600 50.000 0.38 0.00 45.36 3.27
2423 2471 3.492337 ACCGGAATGGCAAGTCTAAAAA 58.508 40.909 9.46 0.00 43.94 1.94
2424 2472 3.149005 ACCGGAATGGCAAGTCTAAAA 57.851 42.857 9.46 0.00 43.94 1.52
2472 2562 3.869912 GCAGTCAATACTTGAGGCTGGAA 60.870 47.826 0.00 0.00 41.01 3.53
2477 2567 3.861840 TGTAGCAGTCAATACTTGAGGC 58.138 45.455 5.69 5.69 41.01 4.70
2532 2622 5.551760 CCACATACTTTGGCTAGAAGTTG 57.448 43.478 0.00 0.00 38.28 3.16
2804 2913 4.322009 GCGAAAACTTAAGCTTCTGATTGC 59.678 41.667 0.00 0.00 0.00 3.56
2894 3007 0.108281 GTACCTTCTGACCCCTTCGC 60.108 60.000 0.00 0.00 0.00 4.70
2960 3073 1.535687 AGGTTGTACAGCGGAGGGT 60.536 57.895 3.46 0.00 0.00 4.34
3325 3442 6.759272 TGATCAGCCTGACAAATATAGGTAC 58.241 40.000 0.00 0.00 34.06 3.34
3378 3495 7.835822 TGGATAAATTGGTTACATGAAACTGG 58.164 34.615 0.00 0.00 0.00 4.00
3380 3497 7.178274 TGCTGGATAAATTGGTTACATGAAACT 59.822 33.333 0.00 0.00 0.00 2.66
3540 3657 8.085296 AGCCTTCAGATATAAAGACGACATAAG 58.915 37.037 0.00 0.00 0.00 1.73
3581 3698 7.341445 TGCCAAACAGAGTAATGTACTTTTT 57.659 32.000 0.00 0.00 39.59 1.94
3582 3699 6.952773 TGCCAAACAGAGTAATGTACTTTT 57.047 33.333 0.00 0.00 39.59 2.27
3588 3705 6.392354 CATGATTTGCCAAACAGAGTAATGT 58.608 36.000 0.00 0.00 33.96 2.71
3612 3729 5.661458 TCTATAACAGCCTTTCACTACAGC 58.339 41.667 0.00 0.00 0.00 4.40
3617 3734 4.223923 ACAGCTCTATAACAGCCTTTCACT 59.776 41.667 0.00 0.00 37.63 3.41
3624 3741 5.880054 TTTTTGACAGCTCTATAACAGCC 57.120 39.130 0.00 0.00 37.63 4.85
3736 3853 1.086696 CCATTGTTAGCCTCACCACG 58.913 55.000 0.00 0.00 0.00 4.94
3745 3862 0.323360 TCCCACTGGCCATTGTTAGC 60.323 55.000 20.56 0.00 0.00 3.09
3784 3901 2.890808 AGGACATAATCATCGCACGT 57.109 45.000 0.00 0.00 0.00 4.49
3789 3906 4.084849 GCAGAACGAAGGACATAATCATCG 60.085 45.833 0.00 0.00 41.47 3.84
3888 4005 0.036952 AGAGCACATCTCCACAACCG 60.037 55.000 0.00 0.00 42.90 4.44
4010 4127 9.349713 GGGAGTAAAATCACCATGTTGATTATA 57.650 33.333 17.66 0.00 38.76 0.98
4039 4156 8.279970 TCGGACTAATCATCATGTTGATTTTT 57.720 30.769 28.24 18.87 42.29 1.94
4040 4157 7.864108 TCGGACTAATCATCATGTTGATTTT 57.136 32.000 28.24 19.14 42.29 1.82
4041 4158 8.455903 AATCGGACTAATCATCATGTTGATTT 57.544 30.769 28.24 16.65 42.29 2.17
4042 4159 8.455903 AAATCGGACTAATCATCATGTTGATT 57.544 30.769 26.92 26.92 45.74 2.57
4043 4160 8.455903 AAAATCGGACTAATCATCATGTTGAT 57.544 30.769 12.58 12.58 37.65 2.57
4044 4161 7.864108 AAAATCGGACTAATCATCATGTTGA 57.136 32.000 8.86 8.86 0.00 3.18
4045 4162 7.645340 GGAAAAATCGGACTAATCATCATGTTG 59.355 37.037 0.00 0.00 0.00 3.33
4046 4163 7.339212 TGGAAAAATCGGACTAATCATCATGTT 59.661 33.333 0.00 0.00 0.00 2.71
4047 4164 6.828273 TGGAAAAATCGGACTAATCATCATGT 59.172 34.615 0.00 0.00 0.00 3.21
4048 4165 7.263100 TGGAAAAATCGGACTAATCATCATG 57.737 36.000 0.00 0.00 0.00 3.07
4049 4166 7.175641 GGATGGAAAAATCGGACTAATCATCAT 59.824 37.037 0.00 0.00 31.74 2.45
4050 4167 6.486657 GGATGGAAAAATCGGACTAATCATCA 59.513 38.462 0.00 0.00 31.74 3.07
4058 4175 3.270877 CTTCGGATGGAAAAATCGGACT 58.729 45.455 0.00 0.00 36.12 3.85
4072 4189 2.618053 CTCGCTAAACCAACTTCGGAT 58.382 47.619 0.00 0.00 0.00 4.18
4095 4212 3.257393 CAAGAAGATTCGAGGGTGACAG 58.743 50.000 0.00 0.00 0.00 3.51
4097 4214 3.320673 ACAAGAAGATTCGAGGGTGAC 57.679 47.619 0.00 0.00 0.00 3.67
4098 4215 3.578716 AGAACAAGAAGATTCGAGGGTGA 59.421 43.478 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.