Multiple sequence alignment - TraesCS7A01G388600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G388600 chr7A 100.000 2637 0 0 1 2637 564270919 564268283 0.000000e+00 4870.0
1 TraesCS7A01G388600 chr5A 92.016 1002 57 11 1648 2637 707715905 707714915 0.000000e+00 1386.0
2 TraesCS7A01G388600 chr5A 94.444 108 6 0 352 459 528581280 528581387 1.620000e-37 167.0
3 TraesCS7A01G388600 chr4A 90.691 999 80 11 1648 2637 602339824 602338830 0.000000e+00 1317.0
4 TraesCS7A01G388600 chr7D 91.982 898 28 14 766 1646 498491107 498490237 0.000000e+00 1219.0
5 TraesCS7A01G388600 chr7D 88.934 994 94 12 1648 2634 116900173 116901157 0.000000e+00 1212.0
6 TraesCS7A01G388600 chr7D 94.690 113 6 0 349 461 151024030 151024142 2.700000e-40 176.0
7 TraesCS7A01G388600 chr7D 89.231 130 14 0 329 458 16921709 16921580 2.100000e-36 163.0
8 TraesCS7A01G388600 chr7D 95.522 67 0 2 264 330 498491586 498491523 1.290000e-18 104.0
9 TraesCS7A01G388600 chr5D 88.745 1004 97 12 1648 2637 439185600 439186601 0.000000e+00 1214.0
10 TraesCS7A01G388600 chr5D 88.677 998 95 12 1648 2637 119608039 119609026 0.000000e+00 1201.0
11 TraesCS7A01G388600 chr5D 76.707 249 49 8 17 262 257745895 257745653 2.130000e-26 130.0
12 TraesCS7A01G388600 chr6D 88.721 993 99 9 1652 2637 404520475 404521461 0.000000e+00 1201.0
13 TraesCS7A01G388600 chr6D 81.413 269 26 8 1196 1464 429658676 429658920 5.760000e-47 198.0
14 TraesCS7A01G388600 chr2D 88.687 990 89 15 1648 2629 610270965 610271939 0.000000e+00 1186.0
15 TraesCS7A01G388600 chr2D 79.681 251 40 9 17 263 561212866 561212623 1.260000e-38 171.0
16 TraesCS7A01G388600 chr2A 88.100 1000 106 11 1648 2637 668912470 668911474 0.000000e+00 1175.0
17 TraesCS7A01G388600 chr2A 93.277 119 7 1 345 462 78333702 78333820 9.700000e-40 174.0
18 TraesCS7A01G388600 chr1A 88.141 995 107 7 1648 2637 553498898 553499886 0.000000e+00 1173.0
19 TraesCS7A01G388600 chr1A 92.063 126 10 0 340 465 499985474 499985349 7.500000e-41 178.0
20 TraesCS7A01G388600 chr7B 90.011 881 36 21 775 1647 526855006 526854170 0.000000e+00 1092.0
21 TraesCS7A01G388600 chr7B 85.876 177 19 5 584 760 526859553 526859383 1.610000e-42 183.0
22 TraesCS7A01G388600 chr7B 82.222 135 21 3 330 463 622685418 622685550 2.150000e-21 113.0
23 TraesCS7A01G388600 chr7B 81.481 135 22 3 330 463 622672658 622672790 9.980000e-20 108.0
24 TraesCS7A01G388600 chr3D 97.004 267 7 1 1 267 6401449 6401184 5.180000e-122 448.0
25 TraesCS7A01G388600 chr3D 90.076 131 10 3 332 461 463852276 463852404 1.620000e-37 167.0
26 TraesCS7A01G388600 chr3D 77.447 235 48 5 11 242 204181806 204182038 4.580000e-28 135.0
27 TraesCS7A01G388600 chr3D 76.000 250 52 7 17 263 524787235 524787479 3.560000e-24 122.0
28 TraesCS7A01G388600 chr1D 84.586 266 35 3 1 260 260331331 260331596 2.600000e-65 259.0
29 TraesCS7A01G388600 chr1D 94.690 113 6 0 346 458 81283607 81283719 2.700000e-40 176.0
30 TraesCS7A01G388600 chr6B 82.657 271 26 7 1194 1464 647502587 647502836 1.230000e-53 220.0
31 TraesCS7A01G388600 chr3B 79.870 308 46 10 457 762 379224452 379224745 7.390000e-51 211.0
32 TraesCS7A01G388600 chr3B 76.238 202 42 6 68 267 36549154 36548957 4.640000e-18 102.0
33 TraesCS7A01G388600 chr6A 77.372 411 42 19 1054 1464 574818818 574819177 2.070000e-46 196.0
34 TraesCS7A01G388600 chr6A 94.737 114 5 1 346 458 190598829 190598716 2.700000e-40 176.0
35 TraesCS7A01G388600 chr6A 78.279 244 42 8 23 263 558118293 558118058 2.120000e-31 147.0
36 TraesCS7A01G388600 chr6A 95.918 49 2 0 76 124 602967359 602967311 2.180000e-11 80.5
37 TraesCS7A01G388600 chr3A 95.536 112 5 0 352 463 79190718 79190607 2.090000e-41 180.0
38 TraesCS7A01G388600 chr2B 94.690 113 6 0 349 461 151465396 151465508 2.700000e-40 176.0
39 TraesCS7A01G388600 chr4D 95.556 45 2 0 309 353 95520239 95520283 3.640000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G388600 chr7A 564268283 564270919 2636 True 4870.0 4870 100.000 1 2637 1 chr7A.!!$R1 2636
1 TraesCS7A01G388600 chr5A 707714915 707715905 990 True 1386.0 1386 92.016 1648 2637 1 chr5A.!!$R1 989
2 TraesCS7A01G388600 chr4A 602338830 602339824 994 True 1317.0 1317 90.691 1648 2637 1 chr4A.!!$R1 989
3 TraesCS7A01G388600 chr7D 116900173 116901157 984 False 1212.0 1212 88.934 1648 2634 1 chr7D.!!$F1 986
4 TraesCS7A01G388600 chr7D 498490237 498491586 1349 True 661.5 1219 93.752 264 1646 2 chr7D.!!$R2 1382
5 TraesCS7A01G388600 chr5D 439185600 439186601 1001 False 1214.0 1214 88.745 1648 2637 1 chr5D.!!$F2 989
6 TraesCS7A01G388600 chr5D 119608039 119609026 987 False 1201.0 1201 88.677 1648 2637 1 chr5D.!!$F1 989
7 TraesCS7A01G388600 chr6D 404520475 404521461 986 False 1201.0 1201 88.721 1652 2637 1 chr6D.!!$F1 985
8 TraesCS7A01G388600 chr2D 610270965 610271939 974 False 1186.0 1186 88.687 1648 2629 1 chr2D.!!$F1 981
9 TraesCS7A01G388600 chr2A 668911474 668912470 996 True 1175.0 1175 88.100 1648 2637 1 chr2A.!!$R1 989
10 TraesCS7A01G388600 chr1A 553498898 553499886 988 False 1173.0 1173 88.141 1648 2637 1 chr1A.!!$F1 989
11 TraesCS7A01G388600 chr7B 526854170 526855006 836 True 1092.0 1092 90.011 775 1647 1 chr7B.!!$R1 872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 589 0.044855 AACTATGGCCTCCTGTCCCT 59.955 55.0 3.32 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2037 0.601558 GCGCGTGGATATCCCTCTAA 59.398 55.0 19.34 0.0 35.38 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.036026 CGAGGTGGATCGTTCAGTG 57.964 57.895 0.00 0.00 37.91 3.66
28 29 0.243907 CGAGGTGGATCGTTCAGTGT 59.756 55.000 0.00 0.00 37.91 3.55
29 30 1.471287 CGAGGTGGATCGTTCAGTGTA 59.529 52.381 0.00 0.00 37.91 2.90
30 31 2.731341 CGAGGTGGATCGTTCAGTGTAC 60.731 54.545 0.00 0.00 37.91 2.90
31 32 1.201647 AGGTGGATCGTTCAGTGTACG 59.798 52.381 15.33 15.33 40.23 3.67
32 33 0.989890 GTGGATCGTTCAGTGTACGC 59.010 55.000 16.49 0.00 38.81 4.42
33 34 0.885879 TGGATCGTTCAGTGTACGCT 59.114 50.000 16.49 7.86 38.81 5.07
34 35 1.135489 TGGATCGTTCAGTGTACGCTC 60.135 52.381 16.49 15.79 38.81 5.03
35 36 1.546834 GATCGTTCAGTGTACGCTCC 58.453 55.000 16.49 5.31 38.81 4.70
36 37 0.179171 ATCGTTCAGTGTACGCTCCG 60.179 55.000 16.49 9.38 38.81 4.63
37 38 1.081641 CGTTCAGTGTACGCTCCGT 60.082 57.895 5.82 0.00 44.35 4.69
38 39 0.662374 CGTTCAGTGTACGCTCCGTT 60.662 55.000 5.82 0.00 41.54 4.44
39 40 0.782384 GTTCAGTGTACGCTCCGTTG 59.218 55.000 5.82 0.00 41.54 4.10
40 41 0.319211 TTCAGTGTACGCTCCGTTGG 60.319 55.000 5.82 0.00 41.54 3.77
41 42 1.006571 CAGTGTACGCTCCGTTGGT 60.007 57.895 5.82 0.00 41.54 3.67
42 43 0.599204 CAGTGTACGCTCCGTTGGTT 60.599 55.000 5.82 0.00 41.54 3.67
43 44 0.961019 AGTGTACGCTCCGTTGGTTA 59.039 50.000 2.24 0.00 41.54 2.85
44 45 1.340889 AGTGTACGCTCCGTTGGTTAA 59.659 47.619 2.24 0.00 41.54 2.01
45 46 1.456923 GTGTACGCTCCGTTGGTTAAC 59.543 52.381 0.00 0.00 41.54 2.01
46 47 1.068281 TGTACGCTCCGTTGGTTAACA 59.932 47.619 8.10 0.00 41.54 2.41
47 48 2.134346 GTACGCTCCGTTGGTTAACAA 58.866 47.619 8.10 0.00 41.54 2.83
48 49 1.223187 ACGCTCCGTTGGTTAACAAG 58.777 50.000 8.10 0.00 40.38 3.16
49 50 1.202557 ACGCTCCGTTGGTTAACAAGA 60.203 47.619 8.10 0.00 40.38 3.02
50 51 2.073816 CGCTCCGTTGGTTAACAAGAT 58.926 47.619 8.10 0.00 40.38 2.40
51 52 2.482721 CGCTCCGTTGGTTAACAAGATT 59.517 45.455 8.10 0.00 40.38 2.40
52 53 3.680937 CGCTCCGTTGGTTAACAAGATTA 59.319 43.478 8.10 0.00 40.38 1.75
53 54 4.201685 CGCTCCGTTGGTTAACAAGATTAG 60.202 45.833 8.10 0.00 40.38 1.73
54 55 4.933400 GCTCCGTTGGTTAACAAGATTAGA 59.067 41.667 8.10 0.00 40.38 2.10
55 56 5.585047 GCTCCGTTGGTTAACAAGATTAGAT 59.415 40.000 8.10 0.00 40.38 1.98
56 57 6.093633 GCTCCGTTGGTTAACAAGATTAGATT 59.906 38.462 8.10 0.00 40.38 2.40
57 58 7.605410 TCCGTTGGTTAACAAGATTAGATTC 57.395 36.000 8.10 0.00 40.38 2.52
58 59 7.391620 TCCGTTGGTTAACAAGATTAGATTCT 58.608 34.615 8.10 0.00 40.38 2.40
59 60 7.881232 TCCGTTGGTTAACAAGATTAGATTCTT 59.119 33.333 8.10 0.00 40.38 2.52
60 61 9.158233 CCGTTGGTTAACAAGATTAGATTCTTA 57.842 33.333 8.10 0.00 40.38 2.10
65 66 9.651718 GGTTAACAAGATTAGATTCTTAATGCG 57.348 33.333 8.10 0.00 34.21 4.73
66 67 9.159470 GTTAACAAGATTAGATTCTTAATGCGC 57.841 33.333 0.00 0.00 34.21 6.09
67 68 6.305693 ACAAGATTAGATTCTTAATGCGCC 57.694 37.500 4.18 0.00 34.21 6.53
68 69 6.058183 ACAAGATTAGATTCTTAATGCGCCT 58.942 36.000 4.18 0.00 34.21 5.52
69 70 6.543831 ACAAGATTAGATTCTTAATGCGCCTT 59.456 34.615 4.18 3.40 34.21 4.35
70 71 7.715249 ACAAGATTAGATTCTTAATGCGCCTTA 59.285 33.333 4.18 2.12 34.21 2.69
71 72 7.897575 AGATTAGATTCTTAATGCGCCTTAG 57.102 36.000 4.18 0.43 0.00 2.18
72 73 7.671302 AGATTAGATTCTTAATGCGCCTTAGA 58.329 34.615 4.18 2.90 0.00 2.10
73 74 7.600752 AGATTAGATTCTTAATGCGCCTTAGAC 59.399 37.037 4.18 0.00 0.00 2.59
74 75 5.023533 AGATTCTTAATGCGCCTTAGACA 57.976 39.130 4.18 0.00 0.00 3.41
75 76 5.428253 AGATTCTTAATGCGCCTTAGACAA 58.572 37.500 4.18 0.34 0.00 3.18
76 77 5.880332 AGATTCTTAATGCGCCTTAGACAAA 59.120 36.000 4.18 0.00 0.00 2.83
77 78 4.939509 TCTTAATGCGCCTTAGACAAAC 57.060 40.909 4.18 0.00 0.00 2.93
78 79 4.575885 TCTTAATGCGCCTTAGACAAACT 58.424 39.130 4.18 0.00 0.00 2.66
79 80 5.001232 TCTTAATGCGCCTTAGACAAACTT 58.999 37.500 4.18 0.00 0.00 2.66
80 81 3.559238 AATGCGCCTTAGACAAACTTG 57.441 42.857 4.18 0.00 0.00 3.16
81 82 0.591170 TGCGCCTTAGACAAACTTGC 59.409 50.000 4.18 0.00 0.00 4.01
82 83 0.591170 GCGCCTTAGACAAACTTGCA 59.409 50.000 0.00 0.00 0.00 4.08
83 84 1.200020 GCGCCTTAGACAAACTTGCAT 59.800 47.619 0.00 0.00 0.00 3.96
84 85 2.351738 GCGCCTTAGACAAACTTGCATT 60.352 45.455 0.00 0.00 0.00 3.56
85 86 3.119990 GCGCCTTAGACAAACTTGCATTA 60.120 43.478 0.00 0.00 0.00 1.90
86 87 4.403453 CGCCTTAGACAAACTTGCATTAC 58.597 43.478 0.00 0.00 0.00 1.89
87 88 4.154195 CGCCTTAGACAAACTTGCATTACT 59.846 41.667 0.00 0.00 0.00 2.24
88 89 5.631992 GCCTTAGACAAACTTGCATTACTC 58.368 41.667 0.00 0.00 0.00 2.59
89 90 5.181245 GCCTTAGACAAACTTGCATTACTCA 59.819 40.000 0.00 0.00 0.00 3.41
90 91 6.127897 GCCTTAGACAAACTTGCATTACTCAT 60.128 38.462 0.00 0.00 0.00 2.90
91 92 7.065803 GCCTTAGACAAACTTGCATTACTCATA 59.934 37.037 0.00 0.00 0.00 2.15
92 93 9.113838 CCTTAGACAAACTTGCATTACTCATAT 57.886 33.333 0.00 0.00 0.00 1.78
94 95 9.890629 TTAGACAAACTTGCATTACTCATATCT 57.109 29.630 0.00 0.00 0.00 1.98
95 96 8.430801 AGACAAACTTGCATTACTCATATCTC 57.569 34.615 0.00 0.00 0.00 2.75
96 97 7.497249 AGACAAACTTGCATTACTCATATCTCC 59.503 37.037 0.00 0.00 0.00 3.71
97 98 6.543831 ACAAACTTGCATTACTCATATCTCCC 59.456 38.462 0.00 0.00 0.00 4.30
98 99 4.887748 ACTTGCATTACTCATATCTCCCG 58.112 43.478 0.00 0.00 0.00 5.14
99 100 4.345257 ACTTGCATTACTCATATCTCCCGT 59.655 41.667 0.00 0.00 0.00 5.28
100 101 4.955811 TGCATTACTCATATCTCCCGTT 57.044 40.909 0.00 0.00 0.00 4.44
101 102 4.883083 TGCATTACTCATATCTCCCGTTC 58.117 43.478 0.00 0.00 0.00 3.95
102 103 4.588951 TGCATTACTCATATCTCCCGTTCT 59.411 41.667 0.00 0.00 0.00 3.01
103 104 5.164954 GCATTACTCATATCTCCCGTTCTC 58.835 45.833 0.00 0.00 0.00 2.87
104 105 5.279006 GCATTACTCATATCTCCCGTTCTCA 60.279 44.000 0.00 0.00 0.00 3.27
105 106 6.385843 CATTACTCATATCTCCCGTTCTCAG 58.614 44.000 0.00 0.00 0.00 3.35
106 107 4.171878 ACTCATATCTCCCGTTCTCAGA 57.828 45.455 0.00 0.00 0.00 3.27
107 108 4.537751 ACTCATATCTCCCGTTCTCAGAA 58.462 43.478 0.00 0.00 0.00 3.02
108 109 5.144100 ACTCATATCTCCCGTTCTCAGAAT 58.856 41.667 0.00 0.00 0.00 2.40
109 110 6.307776 ACTCATATCTCCCGTTCTCAGAATA 58.692 40.000 0.00 0.00 0.00 1.75
110 111 6.778069 ACTCATATCTCCCGTTCTCAGAATAA 59.222 38.462 0.00 0.00 0.00 1.40
111 112 7.287927 ACTCATATCTCCCGTTCTCAGAATAAA 59.712 37.037 0.00 0.00 0.00 1.40
112 113 7.661968 TCATATCTCCCGTTCTCAGAATAAAG 58.338 38.462 0.00 0.00 0.00 1.85
113 114 4.124851 TCTCCCGTTCTCAGAATAAAGC 57.875 45.455 0.00 0.00 0.00 3.51
114 115 3.769844 TCTCCCGTTCTCAGAATAAAGCT 59.230 43.478 0.00 0.00 0.00 3.74
115 116 4.954202 TCTCCCGTTCTCAGAATAAAGCTA 59.046 41.667 0.00 0.00 0.00 3.32
116 117 5.067936 TCTCCCGTTCTCAGAATAAAGCTAG 59.932 44.000 0.00 0.00 0.00 3.42
117 118 4.710375 TCCCGTTCTCAGAATAAAGCTAGT 59.290 41.667 0.00 0.00 0.00 2.57
118 119 4.806247 CCCGTTCTCAGAATAAAGCTAGTG 59.194 45.833 0.00 0.00 0.00 2.74
119 120 5.394224 CCCGTTCTCAGAATAAAGCTAGTGA 60.394 44.000 0.00 0.00 0.00 3.41
120 121 6.276847 CCGTTCTCAGAATAAAGCTAGTGAT 58.723 40.000 0.00 0.00 0.00 3.06
121 122 7.426410 CCGTTCTCAGAATAAAGCTAGTGATA 58.574 38.462 0.00 0.00 0.00 2.15
122 123 7.593273 CCGTTCTCAGAATAAAGCTAGTGATAG 59.407 40.741 0.00 0.00 0.00 2.08
123 124 8.132362 CGTTCTCAGAATAAAGCTAGTGATAGT 58.868 37.037 0.00 0.00 0.00 2.12
124 125 9.810545 GTTCTCAGAATAAAGCTAGTGATAGTT 57.189 33.333 0.00 0.00 0.00 2.24
128 129 9.751542 TCAGAATAAAGCTAGTGATAGTTTAGC 57.248 33.333 0.00 0.00 39.99 3.09
129 130 8.695284 CAGAATAAAGCTAGTGATAGTTTAGCG 58.305 37.037 0.00 0.00 43.43 4.26
130 131 8.630917 AGAATAAAGCTAGTGATAGTTTAGCGA 58.369 33.333 0.00 0.00 43.43 4.93
131 132 8.804688 AATAAAGCTAGTGATAGTTTAGCGAG 57.195 34.615 0.00 0.00 43.43 5.03
132 133 4.839668 AGCTAGTGATAGTTTAGCGAGG 57.160 45.455 0.00 0.00 43.43 4.63
133 134 4.208746 AGCTAGTGATAGTTTAGCGAGGT 58.791 43.478 0.00 0.00 43.43 3.85
134 135 4.645588 AGCTAGTGATAGTTTAGCGAGGTT 59.354 41.667 0.00 0.00 43.43 3.50
135 136 5.127356 AGCTAGTGATAGTTTAGCGAGGTTT 59.873 40.000 0.00 0.00 43.43 3.27
136 137 5.232414 GCTAGTGATAGTTTAGCGAGGTTTG 59.768 44.000 0.00 0.00 31.54 2.93
137 138 3.933332 AGTGATAGTTTAGCGAGGTTTGC 59.067 43.478 0.00 0.00 0.00 3.68
138 139 3.933332 GTGATAGTTTAGCGAGGTTTGCT 59.067 43.478 0.00 0.00 46.29 3.91
139 140 5.105473 AGTGATAGTTTAGCGAGGTTTGCTA 60.105 40.000 0.00 0.00 43.71 3.49
140 141 5.232414 GTGATAGTTTAGCGAGGTTTGCTAG 59.768 44.000 0.00 0.00 45.00 3.42
141 142 3.955650 AGTTTAGCGAGGTTTGCTAGA 57.044 42.857 0.00 0.00 45.00 2.43
142 143 3.851098 AGTTTAGCGAGGTTTGCTAGAG 58.149 45.455 0.00 0.00 45.00 2.43
143 144 3.510360 AGTTTAGCGAGGTTTGCTAGAGA 59.490 43.478 0.00 0.00 45.00 3.10
144 145 4.160626 AGTTTAGCGAGGTTTGCTAGAGAT 59.839 41.667 0.00 0.00 45.00 2.75
145 146 2.593346 AGCGAGGTTTGCTAGAGATG 57.407 50.000 0.00 0.00 41.87 2.90
146 147 2.103373 AGCGAGGTTTGCTAGAGATGA 58.897 47.619 0.00 0.00 41.87 2.92
147 148 2.497675 AGCGAGGTTTGCTAGAGATGAA 59.502 45.455 0.00 0.00 41.87 2.57
148 149 2.863137 GCGAGGTTTGCTAGAGATGAAG 59.137 50.000 0.00 0.00 0.00 3.02
149 150 3.452474 CGAGGTTTGCTAGAGATGAAGG 58.548 50.000 0.00 0.00 0.00 3.46
150 151 3.118956 CGAGGTTTGCTAGAGATGAAGGT 60.119 47.826 0.00 0.00 0.00 3.50
151 152 4.438148 GAGGTTTGCTAGAGATGAAGGTC 58.562 47.826 0.00 0.00 0.00 3.85
152 153 3.118956 AGGTTTGCTAGAGATGAAGGTCG 60.119 47.826 0.00 0.00 0.00 4.79
153 154 3.190874 GTTTGCTAGAGATGAAGGTCGG 58.809 50.000 0.00 0.00 0.00 4.79
154 155 2.437085 TGCTAGAGATGAAGGTCGGA 57.563 50.000 0.00 0.00 0.00 4.55
155 156 2.025155 TGCTAGAGATGAAGGTCGGAC 58.975 52.381 0.00 0.00 0.00 4.79
156 157 2.303175 GCTAGAGATGAAGGTCGGACT 58.697 52.381 8.23 0.00 0.00 3.85
157 158 3.118000 TGCTAGAGATGAAGGTCGGACTA 60.118 47.826 8.23 0.00 0.00 2.59
158 159 4.076394 GCTAGAGATGAAGGTCGGACTAT 58.924 47.826 8.23 0.00 0.00 2.12
159 160 4.083003 GCTAGAGATGAAGGTCGGACTATG 60.083 50.000 8.23 0.00 0.00 2.23
160 161 4.171878 AGAGATGAAGGTCGGACTATGA 57.828 45.455 8.23 0.00 0.00 2.15
161 162 3.886505 AGAGATGAAGGTCGGACTATGAC 59.113 47.826 8.23 0.00 35.60 3.06
162 163 3.886505 GAGATGAAGGTCGGACTATGACT 59.113 47.826 8.23 1.68 36.58 3.41
163 164 4.282496 AGATGAAGGTCGGACTATGACTT 58.718 43.478 8.23 2.30 36.58 3.01
164 165 3.868757 TGAAGGTCGGACTATGACTTG 57.131 47.619 8.23 0.00 36.58 3.16
165 166 2.496070 TGAAGGTCGGACTATGACTTGG 59.504 50.000 8.23 0.00 36.58 3.61
166 167 0.824759 AGGTCGGACTATGACTTGGC 59.175 55.000 8.23 0.00 36.58 4.52
167 168 0.824759 GGTCGGACTATGACTTGGCT 59.175 55.000 8.23 0.00 36.58 4.75
168 169 2.029623 GGTCGGACTATGACTTGGCTA 58.970 52.381 8.23 0.00 36.58 3.93
169 170 2.034812 GGTCGGACTATGACTTGGCTAG 59.965 54.545 8.23 0.00 36.58 3.42
170 171 2.034812 GTCGGACTATGACTTGGCTAGG 59.965 54.545 0.00 0.00 33.54 3.02
171 172 1.341531 CGGACTATGACTTGGCTAGGG 59.658 57.143 0.20 0.00 0.00 3.53
172 173 2.399580 GGACTATGACTTGGCTAGGGT 58.600 52.381 0.20 0.00 0.00 4.34
173 174 2.365941 GGACTATGACTTGGCTAGGGTC 59.634 54.545 0.20 1.44 0.00 4.46
174 175 2.365941 GACTATGACTTGGCTAGGGTCC 59.634 54.545 0.20 0.00 0.00 4.46
175 176 1.341531 CTATGACTTGGCTAGGGTCCG 59.658 57.143 0.20 0.00 0.00 4.79
176 177 0.325296 ATGACTTGGCTAGGGTCCGA 60.325 55.000 0.20 0.00 0.00 4.55
177 178 0.325296 TGACTTGGCTAGGGTCCGAT 60.325 55.000 0.20 0.00 0.00 4.18
178 179 0.389757 GACTTGGCTAGGGTCCGATC 59.610 60.000 0.20 0.00 0.00 3.69
179 180 1.049289 ACTTGGCTAGGGTCCGATCC 61.049 60.000 0.20 0.00 0.00 3.36
180 181 0.760945 CTTGGCTAGGGTCCGATCCT 60.761 60.000 5.30 5.30 38.36 3.24
181 182 1.048724 TTGGCTAGGGTCCGATCCTG 61.049 60.000 10.79 1.92 35.92 3.86
182 183 1.457831 GGCTAGGGTCCGATCCTGT 60.458 63.158 10.79 0.00 35.92 4.00
183 184 1.742768 GCTAGGGTCCGATCCTGTG 59.257 63.158 10.79 4.48 35.92 3.66
184 185 1.749334 GCTAGGGTCCGATCCTGTGG 61.749 65.000 10.79 2.05 35.92 4.17
185 186 0.106167 CTAGGGTCCGATCCTGTGGA 60.106 60.000 10.79 0.00 35.92 4.02
186 187 0.106167 TAGGGTCCGATCCTGTGGAG 60.106 60.000 10.79 0.00 34.05 3.86
187 188 1.381327 GGGTCCGATCCTGTGGAGA 60.381 63.158 0.00 0.00 34.05 3.71
188 189 1.677637 GGGTCCGATCCTGTGGAGAC 61.678 65.000 0.00 0.00 34.05 3.36
189 190 0.684805 GGTCCGATCCTGTGGAGACT 60.685 60.000 0.00 0.00 34.05 3.24
190 191 1.187087 GTCCGATCCTGTGGAGACTT 58.813 55.000 0.00 0.00 34.05 3.01
191 192 1.550976 GTCCGATCCTGTGGAGACTTT 59.449 52.381 0.00 0.00 34.05 2.66
192 193 1.550524 TCCGATCCTGTGGAGACTTTG 59.449 52.381 0.00 0.00 34.05 2.77
193 194 1.406069 CCGATCCTGTGGAGACTTTGG 60.406 57.143 0.00 0.00 34.05 3.28
194 195 1.550524 CGATCCTGTGGAGACTTTGGA 59.449 52.381 0.00 0.00 34.05 3.53
195 196 2.417924 CGATCCTGTGGAGACTTTGGAG 60.418 54.545 0.00 0.00 34.05 3.86
196 197 2.398754 TCCTGTGGAGACTTTGGAGA 57.601 50.000 0.00 0.00 0.00 3.71
197 198 2.907892 TCCTGTGGAGACTTTGGAGAT 58.092 47.619 0.00 0.00 0.00 2.75
198 199 3.251484 TCCTGTGGAGACTTTGGAGATT 58.749 45.455 0.00 0.00 0.00 2.40
199 200 3.008375 TCCTGTGGAGACTTTGGAGATTG 59.992 47.826 0.00 0.00 0.00 2.67
200 201 3.244700 CCTGTGGAGACTTTGGAGATTGT 60.245 47.826 0.00 0.00 0.00 2.71
201 202 3.999663 CTGTGGAGACTTTGGAGATTGTC 59.000 47.826 0.00 0.00 0.00 3.18
213 214 4.000331 GGAGATTGTCCATGATGATCGT 58.000 45.455 0.00 0.00 46.10 3.73
214 215 5.139435 GGAGATTGTCCATGATGATCGTA 57.861 43.478 0.00 0.00 46.10 3.43
215 216 5.541845 GGAGATTGTCCATGATGATCGTAA 58.458 41.667 0.00 0.00 46.10 3.18
216 217 5.991606 GGAGATTGTCCATGATGATCGTAAA 59.008 40.000 0.00 0.00 46.10 2.01
217 218 6.146837 GGAGATTGTCCATGATGATCGTAAAG 59.853 42.308 0.00 0.00 46.10 1.85
218 219 6.820335 AGATTGTCCATGATGATCGTAAAGA 58.180 36.000 0.00 0.00 0.00 2.52
219 220 6.703607 AGATTGTCCATGATGATCGTAAAGAC 59.296 38.462 0.00 5.27 0.00 3.01
220 221 4.693283 TGTCCATGATGATCGTAAAGACC 58.307 43.478 0.00 0.00 0.00 3.85
221 222 4.405680 TGTCCATGATGATCGTAAAGACCT 59.594 41.667 0.00 0.00 0.00 3.85
222 223 4.985409 GTCCATGATGATCGTAAAGACCTC 59.015 45.833 0.00 0.00 0.00 3.85
223 224 3.983988 CCATGATGATCGTAAAGACCTCG 59.016 47.826 0.00 0.00 0.00 4.63
224 225 4.499865 CCATGATGATCGTAAAGACCTCGT 60.500 45.833 0.00 0.00 0.00 4.18
225 226 4.028852 TGATGATCGTAAAGACCTCGTG 57.971 45.455 0.00 0.00 0.00 4.35
226 227 3.692593 TGATGATCGTAAAGACCTCGTGA 59.307 43.478 0.00 0.00 0.00 4.35
227 228 4.338400 TGATGATCGTAAAGACCTCGTGAT 59.662 41.667 0.00 0.00 0.00 3.06
228 229 4.713824 TGATCGTAAAGACCTCGTGATT 57.286 40.909 0.00 0.00 0.00 2.57
229 230 4.421058 TGATCGTAAAGACCTCGTGATTG 58.579 43.478 0.00 0.00 0.00 2.67
230 231 4.157105 TGATCGTAAAGACCTCGTGATTGA 59.843 41.667 0.00 0.00 0.00 2.57
231 232 4.092771 TCGTAAAGACCTCGTGATTGAG 57.907 45.455 0.00 0.00 35.70 3.02
232 233 3.504906 TCGTAAAGACCTCGTGATTGAGT 59.495 43.478 0.00 0.00 34.04 3.41
233 234 4.696877 TCGTAAAGACCTCGTGATTGAGTA 59.303 41.667 0.00 0.00 34.04 2.59
234 235 5.181811 TCGTAAAGACCTCGTGATTGAGTAA 59.818 40.000 0.00 0.00 34.04 2.24
235 236 6.034591 CGTAAAGACCTCGTGATTGAGTAAT 58.965 40.000 0.00 0.00 34.04 1.89
236 237 7.066163 TCGTAAAGACCTCGTGATTGAGTAATA 59.934 37.037 0.00 0.00 34.04 0.98
237 238 7.165483 CGTAAAGACCTCGTGATTGAGTAATAC 59.835 40.741 0.00 0.00 34.04 1.89
238 239 6.525578 AAGACCTCGTGATTGAGTAATACA 57.474 37.500 0.00 0.00 34.04 2.29
239 240 6.525578 AGACCTCGTGATTGAGTAATACAA 57.474 37.500 0.00 0.00 34.04 2.41
240 241 6.565234 AGACCTCGTGATTGAGTAATACAAG 58.435 40.000 0.00 0.00 34.04 3.16
241 242 6.153000 AGACCTCGTGATTGAGTAATACAAGT 59.847 38.462 0.00 0.00 34.04 3.16
242 243 6.698380 ACCTCGTGATTGAGTAATACAAGTT 58.302 36.000 0.00 0.00 34.04 2.66
243 244 7.159372 ACCTCGTGATTGAGTAATACAAGTTT 58.841 34.615 0.00 0.00 34.04 2.66
244 245 7.117812 ACCTCGTGATTGAGTAATACAAGTTTG 59.882 37.037 0.00 0.00 34.04 2.93
245 246 7.117812 CCTCGTGATTGAGTAATACAAGTTTGT 59.882 37.037 2.75 2.75 38.46 2.83
246 247 8.373048 TCGTGATTGAGTAATACAAGTTTGTT 57.627 30.769 2.46 0.00 42.35 2.83
247 248 8.832521 TCGTGATTGAGTAATACAAGTTTGTTT 58.167 29.630 2.46 1.33 42.35 2.83
248 249 9.103048 CGTGATTGAGTAATACAAGTTTGTTTC 57.897 33.333 2.46 0.00 42.35 2.78
251 252 9.827411 GATTGAGTAATACAAGTTTGTTTCTCC 57.173 33.333 2.46 0.00 42.35 3.71
252 253 7.739498 TGAGTAATACAAGTTTGTTTCTCCC 57.261 36.000 2.46 0.00 42.35 4.30
253 254 6.425721 TGAGTAATACAAGTTTGTTTCTCCCG 59.574 38.462 2.46 0.00 42.35 5.14
254 255 4.499037 AATACAAGTTTGTTTCTCCCGC 57.501 40.909 2.46 0.00 42.35 6.13
255 256 1.757682 ACAAGTTTGTTTCTCCCGCA 58.242 45.000 0.00 0.00 38.47 5.69
256 257 2.096248 ACAAGTTTGTTTCTCCCGCAA 58.904 42.857 0.00 0.00 38.47 4.85
257 258 2.494073 ACAAGTTTGTTTCTCCCGCAAA 59.506 40.909 0.00 0.00 38.47 3.68
258 259 3.056465 ACAAGTTTGTTTCTCCCGCAAAA 60.056 39.130 0.00 0.00 38.47 2.44
259 260 3.878160 AGTTTGTTTCTCCCGCAAAAA 57.122 38.095 0.00 0.00 34.47 1.94
297 298 3.525268 AAAGCAAACTTGACTTGTGGG 57.475 42.857 0.00 0.00 35.85 4.61
298 299 2.435372 AGCAAACTTGACTTGTGGGA 57.565 45.000 0.00 0.00 0.00 4.37
299 300 2.024414 AGCAAACTTGACTTGTGGGAC 58.976 47.619 0.00 0.00 0.00 4.46
300 301 1.748493 GCAAACTTGACTTGTGGGACA 59.252 47.619 0.00 0.00 0.00 4.02
302 303 3.181476 GCAAACTTGACTTGTGGGACATT 60.181 43.478 0.00 0.00 44.52 2.71
303 304 4.037446 GCAAACTTGACTTGTGGGACATTA 59.963 41.667 0.00 0.00 44.52 1.90
304 305 5.762045 CAAACTTGACTTGTGGGACATTAG 58.238 41.667 0.00 0.00 44.52 1.73
305 306 4.021102 ACTTGACTTGTGGGACATTAGG 57.979 45.455 0.00 0.00 44.52 2.69
306 307 3.650942 ACTTGACTTGTGGGACATTAGGA 59.349 43.478 0.00 0.00 44.52 2.94
335 336 7.798596 AAATGTTTAAATTTGCCATGTGACA 57.201 28.000 0.00 0.00 0.00 3.58
336 337 7.982761 AATGTTTAAATTTGCCATGTGACAT 57.017 28.000 0.00 0.00 0.00 3.06
337 338 9.499479 AAATGTTTAAATTTGCCATGTGACATA 57.501 25.926 0.00 0.00 0.00 2.29
338 339 8.706492 ATGTTTAAATTTGCCATGTGACATAG 57.294 30.769 0.00 0.00 0.00 2.23
339 340 7.665690 TGTTTAAATTTGCCATGTGACATAGT 58.334 30.769 0.00 0.00 0.00 2.12
340 341 8.147058 TGTTTAAATTTGCCATGTGACATAGTT 58.853 29.630 0.00 0.00 0.00 2.24
341 342 8.647226 GTTTAAATTTGCCATGTGACATAGTTC 58.353 33.333 0.00 0.00 0.00 3.01
342 343 5.981088 AATTTGCCATGTGACATAGTTCA 57.019 34.783 0.00 0.00 0.00 3.18
343 344 5.981088 ATTTGCCATGTGACATAGTTCAA 57.019 34.783 0.00 0.00 0.00 2.69
344 345 5.781210 TTTGCCATGTGACATAGTTCAAA 57.219 34.783 0.00 4.03 0.00 2.69
345 346 5.781210 TTGCCATGTGACATAGTTCAAAA 57.219 34.783 0.00 0.00 0.00 2.44
346 347 5.781210 TGCCATGTGACATAGTTCAAAAA 57.219 34.783 0.00 0.00 0.00 1.94
375 376 6.716898 ACTTCCTCCGTTTTAAATTACTCG 57.283 37.500 0.00 0.00 0.00 4.18
376 377 6.226052 ACTTCCTCCGTTTTAAATTACTCGT 58.774 36.000 0.00 0.00 0.00 4.18
377 378 6.367149 ACTTCCTCCGTTTTAAATTACTCGTC 59.633 38.462 0.00 0.00 0.00 4.20
378 379 4.858692 TCCTCCGTTTTAAATTACTCGTCG 59.141 41.667 0.00 0.00 0.00 5.12
379 380 4.858692 CCTCCGTTTTAAATTACTCGTCGA 59.141 41.667 0.00 0.00 0.00 4.20
380 381 5.345741 CCTCCGTTTTAAATTACTCGTCGAA 59.654 40.000 0.00 0.00 0.00 3.71
381 382 6.380111 TCCGTTTTAAATTACTCGTCGAAG 57.620 37.500 0.00 0.00 0.00 3.79
382 383 6.148948 TCCGTTTTAAATTACTCGTCGAAGA 58.851 36.000 0.03 0.03 0.00 2.87
383 384 6.640499 TCCGTTTTAAATTACTCGTCGAAGAA 59.360 34.615 1.95 0.00 39.69 2.52
384 385 7.168972 TCCGTTTTAAATTACTCGTCGAAGAAA 59.831 33.333 1.95 0.00 39.69 2.52
385 386 7.953710 CCGTTTTAAATTACTCGTCGAAGAAAT 59.046 33.333 1.95 0.00 39.69 2.17
386 387 8.764030 CGTTTTAAATTACTCGTCGAAGAAATG 58.236 33.333 1.95 0.00 39.69 2.32
387 388 9.801714 GTTTTAAATTACTCGTCGAAGAAATGA 57.198 29.630 1.95 0.00 39.69 2.57
390 391 9.967245 TTAAATTACTCGTCGAAGAAATGAATG 57.033 29.630 1.95 0.00 39.69 2.67
391 392 7.596749 AATTACTCGTCGAAGAAATGAATGT 57.403 32.000 1.95 0.00 39.69 2.71
392 393 8.697846 AATTACTCGTCGAAGAAATGAATGTA 57.302 30.769 1.95 0.00 39.69 2.29
393 394 8.873215 ATTACTCGTCGAAGAAATGAATGTAT 57.127 30.769 1.95 0.00 39.69 2.29
394 395 6.814076 ACTCGTCGAAGAAATGAATGTATC 57.186 37.500 1.95 0.00 39.69 2.24
395 396 6.565234 ACTCGTCGAAGAAATGAATGTATCT 58.435 36.000 1.95 0.00 39.69 1.98
396 397 7.704271 ACTCGTCGAAGAAATGAATGTATCTA 58.296 34.615 1.95 0.00 39.69 1.98
397 398 7.858382 ACTCGTCGAAGAAATGAATGTATCTAG 59.142 37.037 1.95 0.00 39.69 2.43
398 399 7.927048 TCGTCGAAGAAATGAATGTATCTAGA 58.073 34.615 0.00 0.00 39.69 2.43
399 400 8.403236 TCGTCGAAGAAATGAATGTATCTAGAA 58.597 33.333 0.00 0.00 39.69 2.10
400 401 8.473016 CGTCGAAGAAATGAATGTATCTAGAAC 58.527 37.037 0.00 0.00 39.69 3.01
401 402 9.522804 GTCGAAGAAATGAATGTATCTAGAACT 57.477 33.333 0.00 0.00 39.69 3.01
431 432 6.625362 ACATCTAGATACATTCATACCTGCG 58.375 40.000 4.54 0.00 0.00 5.18
432 433 6.434340 ACATCTAGATACATTCATACCTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
433 434 6.255596 TCTAGATACATTCATACCTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
434 435 4.937201 AGATACATTCATACCTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
435 436 5.276461 AGATACATTCATACCTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
436 437 5.292765 AGATACATTCATACCTGCGACAAG 58.707 41.667 0.00 0.00 0.00 3.16
437 438 3.334583 ACATTCATACCTGCGACAAGT 57.665 42.857 0.00 0.00 0.00 3.16
438 439 4.465632 ACATTCATACCTGCGACAAGTA 57.534 40.909 0.00 0.00 0.00 2.24
439 440 4.827692 ACATTCATACCTGCGACAAGTAA 58.172 39.130 0.00 0.00 0.00 2.24
440 441 5.428253 ACATTCATACCTGCGACAAGTAAT 58.572 37.500 0.00 0.00 0.00 1.89
441 442 5.880332 ACATTCATACCTGCGACAAGTAATT 59.120 36.000 0.00 0.00 0.00 1.40
442 443 6.037172 ACATTCATACCTGCGACAAGTAATTC 59.963 38.462 0.00 0.00 0.00 2.17
443 444 4.109766 TCATACCTGCGACAAGTAATTCG 58.890 43.478 0.00 0.00 38.31 3.34
444 445 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
445 446 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
446 447 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
447 448 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
464 465 4.750021 GGAACGGAGGGAGTAATAAACT 57.250 45.455 0.00 0.00 42.80 2.66
465 466 4.439968 GGAACGGAGGGAGTAATAAACTG 58.560 47.826 0.00 0.00 39.07 3.16
466 467 3.538634 ACGGAGGGAGTAATAAACTGC 57.461 47.619 0.00 0.00 45.35 4.40
476 477 7.640597 GGAGTAATAAACTGCCCTGTTAATT 57.359 36.000 0.00 0.00 40.51 1.40
477 478 7.704271 GGAGTAATAAACTGCCCTGTTAATTC 58.296 38.462 0.00 0.00 40.51 2.17
478 479 7.556635 GGAGTAATAAACTGCCCTGTTAATTCT 59.443 37.037 0.00 0.00 40.51 2.40
479 480 8.879427 AGTAATAAACTGCCCTGTTAATTCTT 57.121 30.769 0.00 0.00 36.93 2.52
480 481 9.309224 AGTAATAAACTGCCCTGTTAATTCTTT 57.691 29.630 0.00 0.00 36.93 2.52
481 482 9.923143 GTAATAAACTGCCCTGTTAATTCTTTT 57.077 29.630 0.00 0.00 0.00 2.27
484 485 7.833285 AAACTGCCCTGTTAATTCTTTTAGA 57.167 32.000 0.00 0.00 0.00 2.10
485 486 7.833285 AACTGCCCTGTTAATTCTTTTAGAA 57.167 32.000 0.00 0.00 38.78 2.10
486 487 7.833285 ACTGCCCTGTTAATTCTTTTAGAAA 57.167 32.000 0.00 0.00 37.82 2.52
487 488 8.245195 ACTGCCCTGTTAATTCTTTTAGAAAA 57.755 30.769 0.00 0.00 37.82 2.29
488 489 8.700973 ACTGCCCTGTTAATTCTTTTAGAAAAA 58.299 29.630 0.00 0.00 37.82 1.94
489 490 9.710900 CTGCCCTGTTAATTCTTTTAGAAAAAT 57.289 29.630 0.00 0.00 37.82 1.82
499 500 6.783892 TCTTTTAGAAAAATTGCCATGTGC 57.216 33.333 0.00 0.00 41.77 4.57
500 501 5.700373 TCTTTTAGAAAAATTGCCATGTGCC 59.300 36.000 4.07 0.00 40.16 5.01
501 502 4.888326 TTAGAAAAATTGCCATGTGCCT 57.112 36.364 4.07 0.00 40.16 4.75
502 503 5.991933 TTAGAAAAATTGCCATGTGCCTA 57.008 34.783 4.07 0.00 40.16 3.93
503 504 4.888326 AGAAAAATTGCCATGTGCCTAA 57.112 36.364 4.07 0.00 40.16 2.69
504 505 4.824289 AGAAAAATTGCCATGTGCCTAAG 58.176 39.130 4.07 0.00 40.16 2.18
505 506 2.678471 AAATTGCCATGTGCCTAAGC 57.322 45.000 4.07 0.00 40.16 3.09
516 517 2.949177 TGCCTAAGCAGAAAGGAACA 57.051 45.000 0.00 0.00 46.52 3.18
517 518 3.439857 TGCCTAAGCAGAAAGGAACAT 57.560 42.857 0.00 0.00 46.52 2.71
518 519 4.568072 TGCCTAAGCAGAAAGGAACATA 57.432 40.909 0.00 0.00 46.52 2.29
519 520 5.116084 TGCCTAAGCAGAAAGGAACATAT 57.884 39.130 0.00 0.00 46.52 1.78
520 521 5.126067 TGCCTAAGCAGAAAGGAACATATC 58.874 41.667 0.00 0.00 46.52 1.63
521 522 5.104360 TGCCTAAGCAGAAAGGAACATATCT 60.104 40.000 0.00 0.00 46.52 1.98
522 523 5.825151 GCCTAAGCAGAAAGGAACATATCTT 59.175 40.000 0.00 0.00 39.53 2.40
523 524 6.238593 GCCTAAGCAGAAAGGAACATATCTTG 60.239 42.308 0.00 0.00 39.53 3.02
524 525 5.573337 AAGCAGAAAGGAACATATCTTGC 57.427 39.130 0.00 0.00 0.00 4.01
525 526 3.950395 AGCAGAAAGGAACATATCTTGCC 59.050 43.478 0.00 0.00 0.00 4.52
526 527 3.696051 GCAGAAAGGAACATATCTTGCCA 59.304 43.478 0.00 0.00 0.00 4.92
527 528 4.340381 GCAGAAAGGAACATATCTTGCCAT 59.660 41.667 0.00 0.00 0.00 4.40
531 532 6.320672 AGAAAGGAACATATCTTGCCATCTTG 59.679 38.462 0.00 0.00 0.00 3.02
532 533 3.887716 AGGAACATATCTTGCCATCTTGC 59.112 43.478 0.00 0.00 0.00 4.01
568 569 2.789409 AAAGGAGGGACCAGAATTCG 57.211 50.000 0.00 0.00 42.04 3.34
569 570 1.952621 AAGGAGGGACCAGAATTCGA 58.047 50.000 0.00 0.00 42.04 3.71
570 571 1.952621 AGGAGGGACCAGAATTCGAA 58.047 50.000 0.00 0.00 42.04 3.71
571 572 1.555533 AGGAGGGACCAGAATTCGAAC 59.444 52.381 0.00 0.00 42.04 3.95
572 573 1.555533 GGAGGGACCAGAATTCGAACT 59.444 52.381 0.00 0.00 38.79 3.01
573 574 2.764572 GGAGGGACCAGAATTCGAACTA 59.235 50.000 0.00 0.00 38.79 2.24
574 575 3.388350 GGAGGGACCAGAATTCGAACTAT 59.612 47.826 0.00 0.00 38.79 2.12
575 576 4.372656 GAGGGACCAGAATTCGAACTATG 58.627 47.826 0.00 0.00 0.00 2.23
578 579 2.872858 GACCAGAATTCGAACTATGGCC 59.127 50.000 19.38 5.44 0.00 5.36
579 580 2.505819 ACCAGAATTCGAACTATGGCCT 59.494 45.455 19.38 0.00 0.00 5.19
580 581 3.134458 CCAGAATTCGAACTATGGCCTC 58.866 50.000 7.40 0.00 0.00 4.70
582 583 3.041946 AGAATTCGAACTATGGCCTCCT 58.958 45.455 3.32 0.00 0.00 3.69
583 584 2.918712 ATTCGAACTATGGCCTCCTG 57.081 50.000 3.32 0.00 0.00 3.86
584 585 1.568504 TTCGAACTATGGCCTCCTGT 58.431 50.000 3.32 0.00 0.00 4.00
587 588 0.470341 GAACTATGGCCTCCTGTCCC 59.530 60.000 3.32 0.00 0.00 4.46
588 589 0.044855 AACTATGGCCTCCTGTCCCT 59.955 55.000 3.32 0.00 0.00 4.20
589 590 0.692419 ACTATGGCCTCCTGTCCCTG 60.692 60.000 3.32 0.00 0.00 4.45
590 591 2.049627 CTATGGCCTCCTGTCCCTGC 62.050 65.000 3.32 0.00 0.00 4.85
609 610 4.562425 CCAGTGTGGTGTGCGGGT 62.562 66.667 0.00 0.00 31.35 5.28
618 619 0.309612 GGTGTGCGGGTAGTGTTTTG 59.690 55.000 0.00 0.00 0.00 2.44
630 631 5.993441 GGGTAGTGTTTTGACTAGTAAAGCA 59.007 40.000 0.00 3.17 0.00 3.91
650 651 3.479006 CATTCGCTTGGTTTTGTACTCG 58.521 45.455 0.00 0.00 0.00 4.18
653 654 1.398451 CGCTTGGTTTTGTACTCGCAG 60.398 52.381 0.00 0.00 0.00 5.18
679 680 7.507304 CGAACAAGTTAATAAATCTGACGTGT 58.493 34.615 0.00 0.00 35.12 4.49
682 683 8.240883 ACAAGTTAATAAATCTGACGTGTCTC 57.759 34.615 0.00 0.00 29.26 3.36
690 691 1.878656 CTGACGTGTCTCCTGTCCCC 61.879 65.000 0.00 0.00 0.00 4.81
702 703 3.202706 GTCCCCGCGCCAAGATTC 61.203 66.667 0.00 0.00 0.00 2.52
714 715 2.094545 GCCAAGATTCCTGCAACGAATT 60.095 45.455 9.43 0.00 30.08 2.17
719 720 2.163818 TTCCTGCAACGAATTCGACT 57.836 45.000 33.05 16.95 43.02 4.18
789 970 1.674817 CCGCTCGTTTATTCCACACCT 60.675 52.381 0.00 0.00 0.00 4.00
790 971 2.073816 CGCTCGTTTATTCCACACCTT 58.926 47.619 0.00 0.00 0.00 3.50
794 975 4.069304 CTCGTTTATTCCACACCTTTGGA 58.931 43.478 0.00 0.00 44.39 3.53
976 1157 1.674441 TCGTCGTCCAGCTCGATTAAT 59.326 47.619 0.00 0.00 39.45 1.40
979 1160 3.061139 CGTCGTCCAGCTCGATTAATTTC 60.061 47.826 0.00 0.00 39.45 2.17
989 1170 4.299978 CTCGATTAATTTCCCTCTCGACC 58.700 47.826 0.00 0.00 32.38 4.79
990 1171 3.050619 CGATTAATTTCCCTCTCGACCG 58.949 50.000 0.00 0.00 0.00 4.79
991 1172 3.243301 CGATTAATTTCCCTCTCGACCGA 60.243 47.826 0.00 0.00 0.00 4.69
992 1173 4.558898 CGATTAATTTCCCTCTCGACCGAT 60.559 45.833 0.00 0.00 0.00 4.18
993 1174 2.892784 AATTTCCCTCTCGACCGATC 57.107 50.000 0.00 0.00 0.00 3.69
1017 1198 1.268589 CGCACGATCGACTACAATCCT 60.269 52.381 24.34 0.00 0.00 3.24
1045 1226 7.251321 ACCTCTTCTGAGAAATCAAGTACAT 57.749 36.000 0.00 0.00 42.73 2.29
1047 1228 7.605691 ACCTCTTCTGAGAAATCAAGTACATTG 59.394 37.037 0.00 0.00 42.73 2.82
1300 1481 2.227388 GGCTGTTCAATGTGAAGGTGAG 59.773 50.000 0.00 0.00 37.00 3.51
1424 1611 1.953138 CGGCCACTGATCTGATCGC 60.953 63.158 12.65 9.43 0.00 4.58
1533 1720 0.610232 GGTGCTCCTTGGACTTGCAT 60.610 55.000 5.56 0.00 37.18 3.96
1534 1721 1.251251 GTGCTCCTTGGACTTGCATT 58.749 50.000 5.56 0.00 36.04 3.56
1615 1813 7.342799 AGTGGATTGGCAAATATGTTCTGTAAT 59.657 33.333 3.01 0.00 0.00 1.89
1670 1872 6.378280 CAGGAATTTAGTCTATTTTGGGCAGT 59.622 38.462 0.00 0.00 0.00 4.40
1686 1889 5.575157 TGGGCAGTCCAATAACTATTTCAA 58.425 37.500 0.00 0.00 43.84 2.69
1826 2031 1.798813 CTTTCCCACTTGTACGAGCAC 59.201 52.381 10.23 0.00 0.00 4.40
1832 2037 2.596452 CACTTGTACGAGCACGAGAAT 58.404 47.619 11.40 0.00 42.66 2.40
1833 2038 2.987149 CACTTGTACGAGCACGAGAATT 59.013 45.455 11.40 0.00 42.66 2.17
1927 2157 2.447443 TGAGCCGAGCCGATATCTAAT 58.553 47.619 0.34 0.00 0.00 1.73
1972 2203 0.180406 AAAGGTCACACGGAAGCTGT 59.820 50.000 0.00 0.00 0.00 4.40
1973 2204 0.180406 AAGGTCACACGGAAGCTGTT 59.820 50.000 0.00 0.00 0.00 3.16
1974 2205 0.180406 AGGTCACACGGAAGCTGTTT 59.820 50.000 0.00 0.00 0.00 2.83
2010 2244 1.001745 GTTTGAATGCGAACGGTGCC 61.002 55.000 0.00 0.00 0.00 5.01
2078 2312 2.997315 CCCGTCACTGCCCTCTCA 60.997 66.667 0.00 0.00 0.00 3.27
2150 2384 2.027653 CACCAGAACTTCTCCTTCCTCC 60.028 54.545 0.00 0.00 0.00 4.30
2208 2442 3.781307 ATCCTGGCTTGCGGCGTA 61.781 61.111 9.37 0.00 42.94 4.42
2231 2465 0.959372 CACGAGTCGGGACAGTAGGT 60.959 60.000 18.30 0.00 28.17 3.08
2240 2474 2.108970 GGGACAGTAGGTCTCCGAAAT 58.891 52.381 0.00 0.00 46.16 2.17
2282 2516 1.413077 CGGGAGAAGGGTGATAAGGTC 59.587 57.143 0.00 0.00 0.00 3.85
2541 2775 8.818141 TCTACTTCATATATGCAACTTGCTAC 57.182 34.615 14.78 0.00 45.31 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.243907 ACACTGAACGATCCACCTCG 59.756 55.000 0.00 0.00 44.14 4.63
10 11 2.731341 CGTACACTGAACGATCCACCTC 60.731 54.545 0.00 0.00 42.90 3.85
11 12 1.201647 CGTACACTGAACGATCCACCT 59.798 52.381 0.00 0.00 42.90 4.00
12 13 1.625616 CGTACACTGAACGATCCACC 58.374 55.000 0.00 0.00 42.90 4.61
13 14 0.989890 GCGTACACTGAACGATCCAC 59.010 55.000 0.00 0.00 42.90 4.02
14 15 0.885879 AGCGTACACTGAACGATCCA 59.114 50.000 0.00 0.00 42.90 3.41
15 16 1.546834 GAGCGTACACTGAACGATCC 58.453 55.000 2.73 0.00 46.84 3.36
17 18 0.179171 CGGAGCGTACACTGAACGAT 60.179 55.000 0.00 0.00 42.90 3.73
18 19 1.208358 CGGAGCGTACACTGAACGA 59.792 57.895 0.00 0.00 42.90 3.85
19 20 0.662374 AACGGAGCGTACACTGAACG 60.662 55.000 0.00 0.00 39.99 3.95
20 21 0.782384 CAACGGAGCGTACACTGAAC 59.218 55.000 0.00 0.00 39.99 3.18
21 22 0.319211 CCAACGGAGCGTACACTGAA 60.319 55.000 0.00 0.00 39.99 3.02
22 23 1.287815 CCAACGGAGCGTACACTGA 59.712 57.895 0.00 0.00 39.99 3.41
23 24 0.599204 AACCAACGGAGCGTACACTG 60.599 55.000 0.00 0.00 39.99 3.66
24 25 0.961019 TAACCAACGGAGCGTACACT 59.039 50.000 0.00 0.00 39.99 3.55
25 26 1.456923 GTTAACCAACGGAGCGTACAC 59.543 52.381 0.00 0.00 39.99 2.90
26 27 1.068281 TGTTAACCAACGGAGCGTACA 59.932 47.619 2.48 0.00 39.99 2.90
27 28 1.782044 TGTTAACCAACGGAGCGTAC 58.218 50.000 2.48 0.00 39.99 3.67
28 29 2.035704 TCTTGTTAACCAACGGAGCGTA 59.964 45.455 2.48 0.00 39.99 4.42
29 30 1.202557 TCTTGTTAACCAACGGAGCGT 60.203 47.619 2.48 0.00 43.97 5.07
30 31 1.504359 TCTTGTTAACCAACGGAGCG 58.496 50.000 2.48 0.00 37.48 5.03
31 32 4.933400 TCTAATCTTGTTAACCAACGGAGC 59.067 41.667 2.48 0.00 37.48 4.70
32 33 7.549488 AGAATCTAATCTTGTTAACCAACGGAG 59.451 37.037 2.48 0.00 37.48 4.63
33 34 7.391620 AGAATCTAATCTTGTTAACCAACGGA 58.608 34.615 2.48 0.00 37.48 4.69
34 35 7.611213 AGAATCTAATCTTGTTAACCAACGG 57.389 36.000 2.48 0.00 37.48 4.44
39 40 9.651718 CGCATTAAGAATCTAATCTTGTTAACC 57.348 33.333 2.48 0.00 39.87 2.85
40 41 9.159470 GCGCATTAAGAATCTAATCTTGTTAAC 57.841 33.333 0.30 0.00 39.87 2.01
41 42 8.342634 GGCGCATTAAGAATCTAATCTTGTTAA 58.657 33.333 10.83 0.00 39.87 2.01
42 43 7.715249 AGGCGCATTAAGAATCTAATCTTGTTA 59.285 33.333 10.83 0.00 39.87 2.41
43 44 6.543831 AGGCGCATTAAGAATCTAATCTTGTT 59.456 34.615 10.83 0.00 39.87 2.83
44 45 6.058183 AGGCGCATTAAGAATCTAATCTTGT 58.942 36.000 10.83 0.00 39.87 3.16
45 46 6.551385 AGGCGCATTAAGAATCTAATCTTG 57.449 37.500 10.83 0.00 39.87 3.02
46 47 8.150945 TCTAAGGCGCATTAAGAATCTAATCTT 58.849 33.333 16.03 3.03 42.21 2.40
47 48 7.600752 GTCTAAGGCGCATTAAGAATCTAATCT 59.399 37.037 16.03 0.00 0.00 2.40
48 49 7.385205 TGTCTAAGGCGCATTAAGAATCTAATC 59.615 37.037 16.03 3.35 0.00 1.75
49 50 7.217200 TGTCTAAGGCGCATTAAGAATCTAAT 58.783 34.615 16.03 0.00 0.00 1.73
50 51 6.578944 TGTCTAAGGCGCATTAAGAATCTAA 58.421 36.000 16.03 0.00 0.00 2.10
51 52 6.156748 TGTCTAAGGCGCATTAAGAATCTA 57.843 37.500 16.03 0.00 0.00 1.98
52 53 5.023533 TGTCTAAGGCGCATTAAGAATCT 57.976 39.130 16.03 0.00 0.00 2.40
53 54 5.734855 TTGTCTAAGGCGCATTAAGAATC 57.265 39.130 16.03 5.44 0.00 2.52
54 55 5.648092 AGTTTGTCTAAGGCGCATTAAGAAT 59.352 36.000 16.03 0.00 0.00 2.40
55 56 5.001232 AGTTTGTCTAAGGCGCATTAAGAA 58.999 37.500 16.03 8.77 0.00 2.52
56 57 4.575885 AGTTTGTCTAAGGCGCATTAAGA 58.424 39.130 16.03 11.97 0.00 2.10
57 58 4.946784 AGTTTGTCTAAGGCGCATTAAG 57.053 40.909 16.03 9.94 0.00 1.85
58 59 4.614993 GCAAGTTTGTCTAAGGCGCATTAA 60.615 41.667 16.03 0.00 0.00 1.40
59 60 3.119990 GCAAGTTTGTCTAAGGCGCATTA 60.120 43.478 14.47 14.47 0.00 1.90
60 61 2.351738 GCAAGTTTGTCTAAGGCGCATT 60.352 45.455 13.52 13.52 0.00 3.56
61 62 1.200020 GCAAGTTTGTCTAAGGCGCAT 59.800 47.619 10.83 0.00 0.00 4.73
62 63 0.591170 GCAAGTTTGTCTAAGGCGCA 59.409 50.000 10.83 0.00 0.00 6.09
63 64 0.591170 TGCAAGTTTGTCTAAGGCGC 59.409 50.000 0.00 0.00 0.00 6.53
64 65 3.559238 AATGCAAGTTTGTCTAAGGCG 57.441 42.857 0.00 0.00 0.00 5.52
65 66 5.181245 TGAGTAATGCAAGTTTGTCTAAGGC 59.819 40.000 0.00 0.00 0.00 4.35
66 67 6.801539 TGAGTAATGCAAGTTTGTCTAAGG 57.198 37.500 0.00 0.00 0.00 2.69
68 69 9.890629 AGATATGAGTAATGCAAGTTTGTCTAA 57.109 29.630 0.00 0.00 0.00 2.10
69 70 9.534565 GAGATATGAGTAATGCAAGTTTGTCTA 57.465 33.333 0.00 0.00 0.00 2.59
70 71 7.497249 GGAGATATGAGTAATGCAAGTTTGTCT 59.503 37.037 0.00 0.00 0.00 3.41
71 72 7.254932 GGGAGATATGAGTAATGCAAGTTTGTC 60.255 40.741 0.00 0.00 0.00 3.18
72 73 6.543831 GGGAGATATGAGTAATGCAAGTTTGT 59.456 38.462 0.00 0.00 0.00 2.83
73 74 6.293081 CGGGAGATATGAGTAATGCAAGTTTG 60.293 42.308 0.00 0.00 0.00 2.93
74 75 5.760253 CGGGAGATATGAGTAATGCAAGTTT 59.240 40.000 0.00 0.00 0.00 2.66
75 76 5.163301 ACGGGAGATATGAGTAATGCAAGTT 60.163 40.000 0.00 0.00 0.00 2.66
76 77 4.345257 ACGGGAGATATGAGTAATGCAAGT 59.655 41.667 0.00 0.00 0.00 3.16
77 78 4.887748 ACGGGAGATATGAGTAATGCAAG 58.112 43.478 0.00 0.00 0.00 4.01
78 79 4.955811 ACGGGAGATATGAGTAATGCAA 57.044 40.909 0.00 0.00 0.00 4.08
79 80 4.588951 AGAACGGGAGATATGAGTAATGCA 59.411 41.667 0.00 0.00 0.00 3.96
80 81 5.140747 AGAACGGGAGATATGAGTAATGC 57.859 43.478 0.00 0.00 0.00 3.56
81 82 6.207614 TCTGAGAACGGGAGATATGAGTAATG 59.792 42.308 0.00 0.00 0.00 1.90
82 83 6.307776 TCTGAGAACGGGAGATATGAGTAAT 58.692 40.000 0.00 0.00 0.00 1.89
83 84 5.691896 TCTGAGAACGGGAGATATGAGTAA 58.308 41.667 0.00 0.00 0.00 2.24
84 85 5.306114 TCTGAGAACGGGAGATATGAGTA 57.694 43.478 0.00 0.00 0.00 2.59
85 86 4.171878 TCTGAGAACGGGAGATATGAGT 57.828 45.455 0.00 0.00 0.00 3.41
86 87 5.720371 ATTCTGAGAACGGGAGATATGAG 57.280 43.478 0.00 0.00 0.00 2.90
87 88 7.597288 TTTATTCTGAGAACGGGAGATATGA 57.403 36.000 0.00 0.00 0.00 2.15
88 89 6.367422 GCTTTATTCTGAGAACGGGAGATATG 59.633 42.308 0.00 0.00 0.00 1.78
89 90 6.268847 AGCTTTATTCTGAGAACGGGAGATAT 59.731 38.462 0.00 0.00 0.00 1.63
90 91 5.598830 AGCTTTATTCTGAGAACGGGAGATA 59.401 40.000 0.00 0.00 0.00 1.98
91 92 4.407296 AGCTTTATTCTGAGAACGGGAGAT 59.593 41.667 0.00 0.00 0.00 2.75
92 93 3.769844 AGCTTTATTCTGAGAACGGGAGA 59.230 43.478 0.00 0.00 0.00 3.71
93 94 4.130286 AGCTTTATTCTGAGAACGGGAG 57.870 45.455 0.00 0.00 0.00 4.30
94 95 4.710375 ACTAGCTTTATTCTGAGAACGGGA 59.290 41.667 0.00 0.00 0.00 5.14
95 96 4.806247 CACTAGCTTTATTCTGAGAACGGG 59.194 45.833 0.00 0.00 0.00 5.28
96 97 5.651530 TCACTAGCTTTATTCTGAGAACGG 58.348 41.667 0.00 0.00 0.00 4.44
97 98 8.132362 ACTATCACTAGCTTTATTCTGAGAACG 58.868 37.037 0.00 0.00 0.00 3.95
98 99 9.810545 AACTATCACTAGCTTTATTCTGAGAAC 57.189 33.333 0.00 0.00 0.00 3.01
102 103 9.751542 GCTAAACTATCACTAGCTTTATTCTGA 57.248 33.333 0.00 0.00 36.06 3.27
103 104 8.695284 CGCTAAACTATCACTAGCTTTATTCTG 58.305 37.037 0.00 0.00 36.68 3.02
104 105 8.630917 TCGCTAAACTATCACTAGCTTTATTCT 58.369 33.333 0.00 0.00 36.68 2.40
105 106 8.798748 TCGCTAAACTATCACTAGCTTTATTC 57.201 34.615 0.00 0.00 36.68 1.75
106 107 7.868415 CCTCGCTAAACTATCACTAGCTTTATT 59.132 37.037 0.00 0.00 36.68 1.40
107 108 7.014422 ACCTCGCTAAACTATCACTAGCTTTAT 59.986 37.037 0.00 0.00 36.68 1.40
108 109 6.320672 ACCTCGCTAAACTATCACTAGCTTTA 59.679 38.462 0.00 0.00 36.68 1.85
109 110 5.127356 ACCTCGCTAAACTATCACTAGCTTT 59.873 40.000 0.00 0.00 36.68 3.51
110 111 4.645588 ACCTCGCTAAACTATCACTAGCTT 59.354 41.667 0.00 0.00 36.68 3.74
111 112 4.208746 ACCTCGCTAAACTATCACTAGCT 58.791 43.478 0.00 0.00 36.68 3.32
112 113 4.571372 ACCTCGCTAAACTATCACTAGC 57.429 45.455 0.00 0.00 35.69 3.42
113 114 5.232414 GCAAACCTCGCTAAACTATCACTAG 59.768 44.000 0.00 0.00 0.00 2.57
114 115 5.105473 AGCAAACCTCGCTAAACTATCACTA 60.105 40.000 0.00 0.00 38.15 2.74
115 116 3.933332 GCAAACCTCGCTAAACTATCACT 59.067 43.478 0.00 0.00 0.00 3.41
116 117 3.933332 AGCAAACCTCGCTAAACTATCAC 59.067 43.478 0.00 0.00 38.15 3.06
117 118 4.202245 AGCAAACCTCGCTAAACTATCA 57.798 40.909 0.00 0.00 38.15 2.15
118 119 5.589192 TCTAGCAAACCTCGCTAAACTATC 58.411 41.667 0.00 0.00 41.27 2.08
119 120 5.360144 TCTCTAGCAAACCTCGCTAAACTAT 59.640 40.000 0.00 0.00 41.27 2.12
120 121 4.703575 TCTCTAGCAAACCTCGCTAAACTA 59.296 41.667 0.00 0.00 41.27 2.24
121 122 3.510360 TCTCTAGCAAACCTCGCTAAACT 59.490 43.478 0.00 0.00 41.27 2.66
122 123 3.846360 TCTCTAGCAAACCTCGCTAAAC 58.154 45.455 0.00 0.00 41.27 2.01
123 124 4.159693 TCATCTCTAGCAAACCTCGCTAAA 59.840 41.667 0.00 0.00 41.27 1.85
124 125 3.699538 TCATCTCTAGCAAACCTCGCTAA 59.300 43.478 0.00 0.00 41.27 3.09
125 126 3.288092 TCATCTCTAGCAAACCTCGCTA 58.712 45.455 0.00 0.00 40.96 4.26
126 127 2.103373 TCATCTCTAGCAAACCTCGCT 58.897 47.619 0.00 0.00 43.62 4.93
127 128 2.586258 TCATCTCTAGCAAACCTCGC 57.414 50.000 0.00 0.00 0.00 5.03
128 129 3.118956 ACCTTCATCTCTAGCAAACCTCG 60.119 47.826 0.00 0.00 0.00 4.63
129 130 4.438148 GACCTTCATCTCTAGCAAACCTC 58.562 47.826 0.00 0.00 0.00 3.85
130 131 3.118956 CGACCTTCATCTCTAGCAAACCT 60.119 47.826 0.00 0.00 0.00 3.50
131 132 3.190874 CGACCTTCATCTCTAGCAAACC 58.809 50.000 0.00 0.00 0.00 3.27
132 133 3.119101 TCCGACCTTCATCTCTAGCAAAC 60.119 47.826 0.00 0.00 0.00 2.93
133 134 3.096852 TCCGACCTTCATCTCTAGCAAA 58.903 45.455 0.00 0.00 0.00 3.68
134 135 2.427453 GTCCGACCTTCATCTCTAGCAA 59.573 50.000 0.00 0.00 0.00 3.91
135 136 2.025155 GTCCGACCTTCATCTCTAGCA 58.975 52.381 0.00 0.00 0.00 3.49
136 137 2.303175 AGTCCGACCTTCATCTCTAGC 58.697 52.381 0.00 0.00 0.00 3.42
137 138 5.180492 GTCATAGTCCGACCTTCATCTCTAG 59.820 48.000 0.00 0.00 0.00 2.43
138 139 5.064558 GTCATAGTCCGACCTTCATCTCTA 58.935 45.833 0.00 0.00 0.00 2.43
139 140 3.886505 GTCATAGTCCGACCTTCATCTCT 59.113 47.826 0.00 0.00 0.00 3.10
140 141 3.886505 AGTCATAGTCCGACCTTCATCTC 59.113 47.826 0.00 0.00 33.70 2.75
141 142 3.904717 AGTCATAGTCCGACCTTCATCT 58.095 45.455 0.00 0.00 33.70 2.90
142 143 4.363999 CAAGTCATAGTCCGACCTTCATC 58.636 47.826 0.00 0.00 33.70 2.92
143 144 3.133003 CCAAGTCATAGTCCGACCTTCAT 59.867 47.826 0.00 0.00 33.70 2.57
144 145 2.496070 CCAAGTCATAGTCCGACCTTCA 59.504 50.000 0.00 0.00 33.70 3.02
145 146 2.738964 GCCAAGTCATAGTCCGACCTTC 60.739 54.545 0.00 0.00 33.70 3.46
146 147 1.207329 GCCAAGTCATAGTCCGACCTT 59.793 52.381 0.00 0.00 33.70 3.50
147 148 0.824759 GCCAAGTCATAGTCCGACCT 59.175 55.000 0.00 0.00 33.70 3.85
148 149 0.824759 AGCCAAGTCATAGTCCGACC 59.175 55.000 0.00 0.00 33.70 4.79
149 150 2.034812 CCTAGCCAAGTCATAGTCCGAC 59.965 54.545 0.00 0.00 0.00 4.79
150 151 2.307768 CCTAGCCAAGTCATAGTCCGA 58.692 52.381 0.00 0.00 0.00 4.55
151 152 1.341531 CCCTAGCCAAGTCATAGTCCG 59.658 57.143 0.00 0.00 0.00 4.79
152 153 2.365941 GACCCTAGCCAAGTCATAGTCC 59.634 54.545 0.00 0.00 0.00 3.85
153 154 2.365941 GGACCCTAGCCAAGTCATAGTC 59.634 54.545 0.00 0.00 31.99 2.59
154 155 2.399580 GGACCCTAGCCAAGTCATAGT 58.600 52.381 0.00 0.00 31.99 2.12
155 156 1.341531 CGGACCCTAGCCAAGTCATAG 59.658 57.143 0.00 0.00 31.99 2.23
156 157 1.063492 TCGGACCCTAGCCAAGTCATA 60.063 52.381 0.00 0.00 31.99 2.15
157 158 0.325296 TCGGACCCTAGCCAAGTCAT 60.325 55.000 0.00 0.00 31.99 3.06
158 159 0.325296 ATCGGACCCTAGCCAAGTCA 60.325 55.000 0.00 0.00 31.99 3.41
159 160 0.389757 GATCGGACCCTAGCCAAGTC 59.610 60.000 0.00 0.00 0.00 3.01
160 161 1.049289 GGATCGGACCCTAGCCAAGT 61.049 60.000 0.00 0.00 0.00 3.16
161 162 0.760945 AGGATCGGACCCTAGCCAAG 60.761 60.000 0.00 0.00 30.92 3.61
162 163 1.048724 CAGGATCGGACCCTAGCCAA 61.049 60.000 0.00 0.00 31.64 4.52
163 164 1.457643 CAGGATCGGACCCTAGCCA 60.458 63.158 0.00 0.00 31.64 4.75
164 165 1.457831 ACAGGATCGGACCCTAGCC 60.458 63.158 0.00 0.00 31.64 3.93
165 166 1.742768 CACAGGATCGGACCCTAGC 59.257 63.158 0.00 0.00 31.64 3.42
166 167 0.106167 TCCACAGGATCGGACCCTAG 60.106 60.000 0.00 0.00 31.64 3.02
167 168 0.106167 CTCCACAGGATCGGACCCTA 60.106 60.000 0.00 0.00 31.64 3.53
168 169 1.381872 CTCCACAGGATCGGACCCT 60.382 63.158 0.00 0.00 0.00 4.34
169 170 1.381327 TCTCCACAGGATCGGACCC 60.381 63.158 0.00 0.00 0.00 4.46
170 171 0.684805 AGTCTCCACAGGATCGGACC 60.685 60.000 0.00 0.00 28.49 4.46
171 172 1.187087 AAGTCTCCACAGGATCGGAC 58.813 55.000 0.00 0.00 0.00 4.79
172 173 1.550524 CAAAGTCTCCACAGGATCGGA 59.449 52.381 0.00 0.00 0.00 4.55
173 174 1.406069 CCAAAGTCTCCACAGGATCGG 60.406 57.143 0.00 0.00 0.00 4.18
174 175 1.550524 TCCAAAGTCTCCACAGGATCG 59.449 52.381 0.00 0.00 0.00 3.69
175 176 2.834549 TCTCCAAAGTCTCCACAGGATC 59.165 50.000 0.00 0.00 0.00 3.36
176 177 2.907892 TCTCCAAAGTCTCCACAGGAT 58.092 47.619 0.00 0.00 0.00 3.24
177 178 2.398754 TCTCCAAAGTCTCCACAGGA 57.601 50.000 0.00 0.00 0.00 3.86
178 179 3.244700 ACAATCTCCAAAGTCTCCACAGG 60.245 47.826 0.00 0.00 0.00 4.00
179 180 3.999663 GACAATCTCCAAAGTCTCCACAG 59.000 47.826 0.00 0.00 0.00 3.66
180 181 3.244561 GGACAATCTCCAAAGTCTCCACA 60.245 47.826 0.00 0.00 39.21 4.17
181 182 3.339141 GGACAATCTCCAAAGTCTCCAC 58.661 50.000 0.00 0.00 39.21 4.02
182 183 3.703001 GGACAATCTCCAAAGTCTCCA 57.297 47.619 0.00 0.00 39.21 3.86
192 193 4.000331 ACGATCATCATGGACAATCTCC 58.000 45.455 0.00 0.00 39.97 3.71
193 194 6.925718 TCTTTACGATCATCATGGACAATCTC 59.074 38.462 0.00 0.00 0.00 2.75
194 195 6.703607 GTCTTTACGATCATCATGGACAATCT 59.296 38.462 0.00 0.00 0.00 2.40
195 196 6.073548 GGTCTTTACGATCATCATGGACAATC 60.074 42.308 0.00 0.00 0.00 2.67
196 197 5.760253 GGTCTTTACGATCATCATGGACAAT 59.240 40.000 0.00 0.00 0.00 2.71
197 198 5.104941 AGGTCTTTACGATCATCATGGACAA 60.105 40.000 0.00 0.00 0.00 3.18
198 199 4.405680 AGGTCTTTACGATCATCATGGACA 59.594 41.667 0.00 0.00 0.00 4.02
199 200 4.950050 AGGTCTTTACGATCATCATGGAC 58.050 43.478 0.00 0.00 0.00 4.02
200 201 4.261614 CGAGGTCTTTACGATCATCATGGA 60.262 45.833 0.00 0.00 0.00 3.41
201 202 3.983988 CGAGGTCTTTACGATCATCATGG 59.016 47.826 0.00 0.00 0.00 3.66
202 203 4.442403 CACGAGGTCTTTACGATCATCATG 59.558 45.833 0.00 0.00 0.00 3.07
203 204 4.338400 TCACGAGGTCTTTACGATCATCAT 59.662 41.667 0.00 0.00 0.00 2.45
204 205 3.692593 TCACGAGGTCTTTACGATCATCA 59.307 43.478 0.00 0.00 0.00 3.07
205 206 4.288670 TCACGAGGTCTTTACGATCATC 57.711 45.455 0.00 0.00 0.00 2.92
206 207 4.920640 ATCACGAGGTCTTTACGATCAT 57.079 40.909 0.00 0.00 0.00 2.45
207 208 4.157105 TCAATCACGAGGTCTTTACGATCA 59.843 41.667 0.00 0.00 0.00 2.92
208 209 4.669318 TCAATCACGAGGTCTTTACGATC 58.331 43.478 0.00 0.00 0.00 3.69
209 210 4.158025 ACTCAATCACGAGGTCTTTACGAT 59.842 41.667 0.00 0.00 37.34 3.73
210 211 3.504906 ACTCAATCACGAGGTCTTTACGA 59.495 43.478 0.00 0.00 37.34 3.43
211 212 3.834610 ACTCAATCACGAGGTCTTTACG 58.165 45.455 0.00 0.00 37.34 3.18
212 213 7.972277 TGTATTACTCAATCACGAGGTCTTTAC 59.028 37.037 0.00 0.00 37.34 2.01
213 214 8.058667 TGTATTACTCAATCACGAGGTCTTTA 57.941 34.615 0.00 0.00 37.34 1.85
214 215 6.931838 TGTATTACTCAATCACGAGGTCTTT 58.068 36.000 0.00 0.00 37.34 2.52
215 216 6.525578 TGTATTACTCAATCACGAGGTCTT 57.474 37.500 0.00 0.00 37.34 3.01
216 217 6.153000 ACTTGTATTACTCAATCACGAGGTCT 59.847 38.462 0.00 0.00 37.34 3.85
217 218 6.331061 ACTTGTATTACTCAATCACGAGGTC 58.669 40.000 0.00 0.00 37.34 3.85
218 219 6.282199 ACTTGTATTACTCAATCACGAGGT 57.718 37.500 0.00 0.00 37.34 3.85
219 220 7.117812 ACAAACTTGTATTACTCAATCACGAGG 59.882 37.037 0.00 0.00 40.16 4.63
220 221 8.018677 ACAAACTTGTATTACTCAATCACGAG 57.981 34.615 0.00 0.00 40.16 4.18
221 222 7.956420 ACAAACTTGTATTACTCAATCACGA 57.044 32.000 0.00 0.00 40.16 4.35
222 223 9.103048 GAAACAAACTTGTATTACTCAATCACG 57.897 33.333 0.00 0.00 41.31 4.35
225 226 9.827411 GGAGAAACAAACTTGTATTACTCAATC 57.173 33.333 0.00 0.00 41.31 2.67
226 227 8.793592 GGGAGAAACAAACTTGTATTACTCAAT 58.206 33.333 0.00 0.00 41.31 2.57
227 228 7.041644 CGGGAGAAACAAACTTGTATTACTCAA 60.042 37.037 0.00 0.00 41.31 3.02
228 229 6.425721 CGGGAGAAACAAACTTGTATTACTCA 59.574 38.462 0.00 0.00 41.31 3.41
229 230 6.620089 GCGGGAGAAACAAACTTGTATTACTC 60.620 42.308 0.00 3.47 41.31 2.59
230 231 5.180680 GCGGGAGAAACAAACTTGTATTACT 59.819 40.000 0.00 0.00 41.31 2.24
231 232 5.049267 TGCGGGAGAAACAAACTTGTATTAC 60.049 40.000 0.00 0.00 41.31 1.89
232 233 5.064558 TGCGGGAGAAACAAACTTGTATTA 58.935 37.500 0.00 0.00 41.31 0.98
233 234 3.886505 TGCGGGAGAAACAAACTTGTATT 59.113 39.130 0.00 0.00 41.31 1.89
234 235 3.482436 TGCGGGAGAAACAAACTTGTAT 58.518 40.909 0.00 0.00 41.31 2.29
235 236 2.920524 TGCGGGAGAAACAAACTTGTA 58.079 42.857 0.00 0.00 41.31 2.41
236 237 1.757682 TGCGGGAGAAACAAACTTGT 58.242 45.000 0.00 0.00 44.72 3.16
237 238 2.861462 TTGCGGGAGAAACAAACTTG 57.139 45.000 0.00 0.00 0.00 3.16
238 239 3.878160 TTTTGCGGGAGAAACAAACTT 57.122 38.095 0.00 0.00 33.29 2.66
239 240 3.878160 TTTTTGCGGGAGAAACAAACT 57.122 38.095 0.00 0.00 33.29 2.66
257 258 5.523552 GCTTTTGTACATGGCAGTTCTTTTT 59.476 36.000 0.00 0.00 0.00 1.94
258 259 5.049828 GCTTTTGTACATGGCAGTTCTTTT 58.950 37.500 0.00 0.00 0.00 2.27
259 260 4.099266 TGCTTTTGTACATGGCAGTTCTTT 59.901 37.500 11.94 0.00 0.00 2.52
260 261 3.636300 TGCTTTTGTACATGGCAGTTCTT 59.364 39.130 11.94 0.00 0.00 2.52
261 262 3.221771 TGCTTTTGTACATGGCAGTTCT 58.778 40.909 11.94 0.00 0.00 3.01
262 263 3.641437 TGCTTTTGTACATGGCAGTTC 57.359 42.857 11.94 0.00 0.00 3.01
349 350 9.520204 CGAGTAATTTAAAACGGAGGAAGTATA 57.480 33.333 0.00 0.00 0.00 1.47
350 351 8.037166 ACGAGTAATTTAAAACGGAGGAAGTAT 58.963 33.333 0.00 0.00 0.00 2.12
351 352 7.378181 ACGAGTAATTTAAAACGGAGGAAGTA 58.622 34.615 0.00 0.00 0.00 2.24
352 353 6.226052 ACGAGTAATTTAAAACGGAGGAAGT 58.774 36.000 0.00 0.00 0.00 3.01
353 354 6.453396 CGACGAGTAATTTAAAACGGAGGAAG 60.453 42.308 0.00 0.00 0.00 3.46
354 355 5.345741 CGACGAGTAATTTAAAACGGAGGAA 59.654 40.000 0.00 0.00 0.00 3.36
355 356 4.858692 CGACGAGTAATTTAAAACGGAGGA 59.141 41.667 0.00 0.00 0.00 3.71
356 357 4.858692 TCGACGAGTAATTTAAAACGGAGG 59.141 41.667 0.00 0.00 0.00 4.30
357 358 5.997732 TCGACGAGTAATTTAAAACGGAG 57.002 39.130 0.00 0.00 0.00 4.63
358 359 6.148948 TCTTCGACGAGTAATTTAAAACGGA 58.851 36.000 0.00 0.00 0.00 4.69
359 360 6.380111 TCTTCGACGAGTAATTTAAAACGG 57.620 37.500 0.00 0.00 0.00 4.44
360 361 8.764030 CATTTCTTCGACGAGTAATTTAAAACG 58.236 33.333 0.00 0.00 0.00 3.60
361 362 9.801714 TCATTTCTTCGACGAGTAATTTAAAAC 57.198 29.630 0.00 0.00 0.00 2.43
364 365 9.967245 CATTCATTTCTTCGACGAGTAATTTAA 57.033 29.630 0.00 0.00 0.00 1.52
365 366 9.146984 ACATTCATTTCTTCGACGAGTAATTTA 57.853 29.630 0.00 0.00 0.00 1.40
366 367 8.029642 ACATTCATTTCTTCGACGAGTAATTT 57.970 30.769 0.00 0.00 0.00 1.82
367 368 7.596749 ACATTCATTTCTTCGACGAGTAATT 57.403 32.000 0.00 0.00 0.00 1.40
368 369 8.873215 ATACATTCATTTCTTCGACGAGTAAT 57.127 30.769 0.00 0.00 0.00 1.89
369 370 8.188799 AGATACATTCATTTCTTCGACGAGTAA 58.811 33.333 0.00 0.00 0.00 2.24
370 371 7.704271 AGATACATTCATTTCTTCGACGAGTA 58.296 34.615 0.00 0.00 0.00 2.59
371 372 6.565234 AGATACATTCATTTCTTCGACGAGT 58.435 36.000 0.00 0.00 0.00 4.18
372 373 8.070769 TCTAGATACATTCATTTCTTCGACGAG 58.929 37.037 0.00 0.00 0.00 4.18
373 374 7.927048 TCTAGATACATTCATTTCTTCGACGA 58.073 34.615 0.00 0.00 0.00 4.20
374 375 8.473016 GTTCTAGATACATTCATTTCTTCGACG 58.527 37.037 0.00 0.00 0.00 5.12
375 376 9.522804 AGTTCTAGATACATTCATTTCTTCGAC 57.477 33.333 0.00 0.00 0.00 4.20
405 406 8.409371 CGCAGGTATGAATGTATCTAGATGTAT 58.591 37.037 15.79 6.61 0.00 2.29
406 407 7.610305 TCGCAGGTATGAATGTATCTAGATGTA 59.390 37.037 15.79 4.44 0.00 2.29
407 408 6.434340 TCGCAGGTATGAATGTATCTAGATGT 59.566 38.462 15.79 0.00 0.00 3.06
408 409 6.749578 GTCGCAGGTATGAATGTATCTAGATG 59.250 42.308 15.79 0.00 0.00 2.90
409 410 6.434340 TGTCGCAGGTATGAATGTATCTAGAT 59.566 38.462 10.73 10.73 0.00 1.98
410 411 5.768164 TGTCGCAGGTATGAATGTATCTAGA 59.232 40.000 0.00 0.00 0.00 2.43
411 412 6.013842 TGTCGCAGGTATGAATGTATCTAG 57.986 41.667 0.00 0.00 0.00 2.43
412 413 6.040504 ACTTGTCGCAGGTATGAATGTATCTA 59.959 38.462 0.00 0.00 0.00 1.98
413 414 4.937201 TGTCGCAGGTATGAATGTATCT 57.063 40.909 0.00 0.00 0.00 1.98
414 415 5.050490 ACTTGTCGCAGGTATGAATGTATC 58.950 41.667 0.00 0.00 0.00 2.24
415 416 5.023533 ACTTGTCGCAGGTATGAATGTAT 57.976 39.130 0.00 0.00 0.00 2.29
416 417 4.465632 ACTTGTCGCAGGTATGAATGTA 57.534 40.909 0.00 0.00 0.00 2.29
417 418 3.334583 ACTTGTCGCAGGTATGAATGT 57.665 42.857 0.00 0.00 0.00 2.71
418 419 5.991328 ATTACTTGTCGCAGGTATGAATG 57.009 39.130 3.46 0.00 0.00 2.67
419 420 5.234329 CGAATTACTTGTCGCAGGTATGAAT 59.766 40.000 3.46 0.00 0.00 2.57
420 421 4.565166 CGAATTACTTGTCGCAGGTATGAA 59.435 41.667 3.46 0.00 0.00 2.57
421 422 4.109766 CGAATTACTTGTCGCAGGTATGA 58.890 43.478 3.46 0.00 0.00 2.15
422 423 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
423 424 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
424 425 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
425 426 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
426 427 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
427 428 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
428 429 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
429 430 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
430 431 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
431 432 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
432 433 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
433 434 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
434 435 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
435 436 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
436 437 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
437 438 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
438 439 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
439 440 1.856629 TTACTCCCTCCGTTCCGAAT 58.143 50.000 0.00 0.00 0.00 3.34
440 441 1.856629 ATTACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
441 442 2.734755 TATTACTCCCTCCGTTCCGA 57.265 50.000 0.00 0.00 0.00 4.55
442 443 3.131755 AGTTTATTACTCCCTCCGTTCCG 59.868 47.826 0.00 0.00 28.23 4.30
443 444 4.439968 CAGTTTATTACTCCCTCCGTTCC 58.560 47.826 0.00 0.00 33.85 3.62
444 445 3.869832 GCAGTTTATTACTCCCTCCGTTC 59.130 47.826 0.00 0.00 33.85 3.95
445 446 3.370209 GGCAGTTTATTACTCCCTCCGTT 60.370 47.826 0.00 0.00 31.36 4.44
446 447 2.169978 GGCAGTTTATTACTCCCTCCGT 59.830 50.000 0.00 0.00 31.36 4.69
447 448 2.484947 GGGCAGTTTATTACTCCCTCCG 60.485 54.545 0.00 0.00 39.35 4.63
448 449 2.778270 AGGGCAGTTTATTACTCCCTCC 59.222 50.000 0.00 0.00 44.53 4.30
449 450 3.200165 ACAGGGCAGTTTATTACTCCCTC 59.800 47.826 10.22 0.00 45.28 4.30
450 451 3.190439 ACAGGGCAGTTTATTACTCCCT 58.810 45.455 0.00 0.00 46.67 4.20
451 452 3.646736 ACAGGGCAGTTTATTACTCCC 57.353 47.619 0.00 0.00 41.15 4.30
452 453 7.556635 AGAATTAACAGGGCAGTTTATTACTCC 59.443 37.037 6.37 0.00 32.70 3.85
453 454 8.507524 AGAATTAACAGGGCAGTTTATTACTC 57.492 34.615 6.37 0.00 32.70 2.59
454 455 8.879427 AAGAATTAACAGGGCAGTTTATTACT 57.121 30.769 6.37 4.40 32.70 2.24
455 456 9.923143 AAAAGAATTAACAGGGCAGTTTATTAC 57.077 29.630 6.37 2.83 32.70 1.89
458 459 9.528489 TCTAAAAGAATTAACAGGGCAGTTTAT 57.472 29.630 0.00 0.00 33.07 1.40
459 460 8.927675 TCTAAAAGAATTAACAGGGCAGTTTA 57.072 30.769 0.00 0.00 33.07 2.01
460 461 7.833285 TCTAAAAGAATTAACAGGGCAGTTT 57.167 32.000 0.00 0.00 33.07 2.66
461 462 7.833285 TTCTAAAAGAATTAACAGGGCAGTT 57.167 32.000 0.35 0.35 35.55 3.16
462 463 7.833285 TTTCTAAAAGAATTAACAGGGCAGT 57.167 32.000 0.00 0.00 33.67 4.40
463 464 9.710900 ATTTTTCTAAAAGAATTAACAGGGCAG 57.289 29.630 0.00 0.00 33.67 4.85
473 474 8.291740 GCACATGGCAATTTTTCTAAAAGAATT 58.708 29.630 0.00 0.00 43.97 2.17
474 475 7.809665 GCACATGGCAATTTTTCTAAAAGAAT 58.190 30.769 0.00 0.00 43.97 2.40
475 476 7.188468 GCACATGGCAATTTTTCTAAAAGAA 57.812 32.000 0.00 0.00 43.97 2.52
476 477 6.783892 GCACATGGCAATTTTTCTAAAAGA 57.216 33.333 0.00 0.00 43.97 2.52
491 492 1.133790 CTTTCTGCTTAGGCACATGGC 59.866 52.381 0.00 0.00 44.28 4.40
492 493 1.747355 CCTTTCTGCTTAGGCACATGG 59.253 52.381 0.00 0.00 44.28 3.66
493 494 2.715046 TCCTTTCTGCTTAGGCACATG 58.285 47.619 0.00 0.00 44.28 3.21
494 495 3.084786 GTTCCTTTCTGCTTAGGCACAT 58.915 45.455 0.00 0.00 44.28 3.21
495 496 2.158682 TGTTCCTTTCTGCTTAGGCACA 60.159 45.455 0.00 0.00 44.28 4.57
496 497 2.504367 TGTTCCTTTCTGCTTAGGCAC 58.496 47.619 0.00 0.00 44.28 5.01
498 499 5.372373 AGATATGTTCCTTTCTGCTTAGGC 58.628 41.667 0.00 0.00 39.26 3.93
499 500 6.238593 GCAAGATATGTTCCTTTCTGCTTAGG 60.239 42.308 0.00 0.00 0.00 2.69
500 501 6.238593 GGCAAGATATGTTCCTTTCTGCTTAG 60.239 42.308 0.00 0.00 0.00 2.18
501 502 5.590259 GGCAAGATATGTTCCTTTCTGCTTA 59.410 40.000 0.00 0.00 0.00 3.09
502 503 4.400567 GGCAAGATATGTTCCTTTCTGCTT 59.599 41.667 0.00 0.00 0.00 3.91
503 504 3.950395 GGCAAGATATGTTCCTTTCTGCT 59.050 43.478 0.00 0.00 0.00 4.24
504 505 3.696051 TGGCAAGATATGTTCCTTTCTGC 59.304 43.478 0.00 0.00 0.00 4.26
505 506 5.826737 AGATGGCAAGATATGTTCCTTTCTG 59.173 40.000 0.00 0.00 0.00 3.02
506 507 6.011122 AGATGGCAAGATATGTTCCTTTCT 57.989 37.500 0.00 0.00 0.00 2.52
507 508 6.501781 CAAGATGGCAAGATATGTTCCTTTC 58.498 40.000 0.00 0.00 0.00 2.62
508 509 5.163478 GCAAGATGGCAAGATATGTTCCTTT 60.163 40.000 0.00 0.00 0.00 3.11
509 510 4.340381 GCAAGATGGCAAGATATGTTCCTT 59.660 41.667 0.00 0.00 0.00 3.36
510 511 3.887716 GCAAGATGGCAAGATATGTTCCT 59.112 43.478 0.00 0.00 0.00 3.36
511 512 3.633525 TGCAAGATGGCAAGATATGTTCC 59.366 43.478 0.00 0.00 41.65 3.62
512 513 4.906065 TGCAAGATGGCAAGATATGTTC 57.094 40.909 0.00 0.00 41.65 3.18
522 523 3.890756 TCTTCTCTTTTTGCAAGATGGCA 59.109 39.130 0.00 0.00 43.19 4.92
523 524 4.510038 TCTTCTCTTTTTGCAAGATGGC 57.490 40.909 0.00 0.00 0.00 4.40
524 525 7.775397 TTTTTCTTCTCTTTTTGCAAGATGG 57.225 32.000 0.00 0.00 0.00 3.51
560 561 3.134458 GGAGGCCATAGTTCGAATTCTG 58.866 50.000 5.01 0.00 0.00 3.02
564 565 2.103263 GACAGGAGGCCATAGTTCGAAT 59.897 50.000 5.01 0.00 0.00 3.34
566 567 1.112113 GACAGGAGGCCATAGTTCGA 58.888 55.000 5.01 0.00 0.00 3.71
567 568 0.105039 GGACAGGAGGCCATAGTTCG 59.895 60.000 5.01 0.00 0.00 3.95
568 569 0.470341 GGGACAGGAGGCCATAGTTC 59.530 60.000 5.01 0.00 0.00 3.01
569 570 0.044855 AGGGACAGGAGGCCATAGTT 59.955 55.000 5.01 0.00 0.00 2.24
570 571 0.692419 CAGGGACAGGAGGCCATAGT 60.692 60.000 5.01 0.00 0.00 2.12
571 572 2.049627 GCAGGGACAGGAGGCCATAG 62.050 65.000 5.01 0.00 0.00 2.23
572 573 2.072487 GCAGGGACAGGAGGCCATA 61.072 63.158 5.01 0.00 0.00 2.74
573 574 3.415087 GCAGGGACAGGAGGCCAT 61.415 66.667 5.01 0.00 0.00 4.40
582 583 4.624364 CACACTGGCGCAGGGACA 62.624 66.667 10.83 0.00 36.97 4.02
587 588 3.653009 CACACCACACTGGCGCAG 61.653 66.667 10.83 7.58 42.67 5.18
609 610 7.359765 GCGAATGCTTTACTAGTCAAAACACTA 60.360 37.037 0.00 0.00 38.39 2.74
630 631 2.095919 GCGAGTACAAAACCAAGCGAAT 60.096 45.455 0.00 0.00 0.00 3.34
637 638 0.249531 TCGCTGCGAGTACAAAACCA 60.250 50.000 22.24 0.00 0.00 3.67
650 651 6.466097 GTCAGATTTATTAACTTGTTCGCTGC 59.534 38.462 0.00 0.00 0.00 5.25
653 654 6.461698 CACGTCAGATTTATTAACTTGTTCGC 59.538 38.462 0.00 0.00 0.00 4.70
690 691 2.689785 TTGCAGGAATCTTGGCGCG 61.690 57.895 0.00 0.00 0.00 6.86
702 703 2.854777 CTCTAGTCGAATTCGTTGCAGG 59.145 50.000 25.93 13.02 40.80 4.85
714 715 2.001159 GAACACGCTCTCTCTAGTCGA 58.999 52.381 0.00 0.00 0.00 4.20
764 785 1.276989 TGGAATAAACGAGCGGTCCTT 59.723 47.619 9.39 5.47 0.00 3.36
789 970 1.215924 ACCCGGGTTCTTCTTTCCAAA 59.784 47.619 24.16 0.00 0.00 3.28
790 971 0.848053 ACCCGGGTTCTTCTTTCCAA 59.152 50.000 24.16 0.00 0.00 3.53
794 975 0.109913 GGTCACCCGGGTTCTTCTTT 59.890 55.000 27.83 0.00 0.00 2.52
994 1175 1.068832 TTGTAGTCGATCGTGCGCAC 61.069 55.000 30.42 30.42 0.00 5.34
995 1176 0.179148 ATTGTAGTCGATCGTGCGCA 60.179 50.000 15.94 5.66 0.00 6.09
996 1177 0.498927 GATTGTAGTCGATCGTGCGC 59.501 55.000 15.94 0.00 0.00 6.09
997 1178 1.121240 GGATTGTAGTCGATCGTGCG 58.879 55.000 15.94 0.00 35.80 5.34
998 1179 2.386249 GAGGATTGTAGTCGATCGTGC 58.614 52.381 15.94 9.53 35.80 5.34
999 1180 2.031807 ACGAGGATTGTAGTCGATCGTG 59.968 50.000 15.94 0.00 38.75 4.35
1000 1181 2.286872 ACGAGGATTGTAGTCGATCGT 58.713 47.619 15.94 0.00 36.80 3.73
1001 1182 3.363772 GGTACGAGGATTGTAGTCGATCG 60.364 52.174 9.36 9.36 35.15 3.69
1002 1183 3.814283 AGGTACGAGGATTGTAGTCGATC 59.186 47.826 0.00 0.00 35.15 3.69
1003 1184 3.814283 GAGGTACGAGGATTGTAGTCGAT 59.186 47.826 0.00 0.00 35.15 3.59
1004 1185 3.118482 AGAGGTACGAGGATTGTAGTCGA 60.118 47.826 0.00 0.00 35.15 4.20
1005 1186 3.204526 AGAGGTACGAGGATTGTAGTCG 58.795 50.000 0.00 0.00 35.15 4.18
1006 1187 4.883006 AGAAGAGGTACGAGGATTGTAGTC 59.117 45.833 0.00 0.00 35.15 2.59
1007 1188 4.641094 CAGAAGAGGTACGAGGATTGTAGT 59.359 45.833 0.00 0.00 35.15 2.73
1008 1189 4.882427 TCAGAAGAGGTACGAGGATTGTAG 59.118 45.833 0.00 0.00 35.15 2.74
1017 1198 5.477291 ACTTGATTTCTCAGAAGAGGTACGA 59.523 40.000 0.00 0.00 42.34 3.43
1045 1226 2.733218 CGCCTCGACGTTGAGCAA 60.733 61.111 24.98 0.00 34.56 3.91
1327 1514 3.358667 TAGTCGTCGTCGCTGTCGC 62.359 63.158 0.00 0.00 36.96 5.19
1476 1663 2.354203 GCCAGTCCAACAAACAAAACCA 60.354 45.455 0.00 0.00 0.00 3.67
1478 1665 2.276201 GGCCAGTCCAACAAACAAAAC 58.724 47.619 0.00 0.00 34.01 2.43
1483 1670 1.826487 ACCGGCCAGTCCAACAAAC 60.826 57.895 0.00 0.00 34.01 2.93
1507 1694 2.432628 CAAGGAGCACCGGTCGAC 60.433 66.667 2.59 7.13 41.83 4.20
1521 1708 5.799681 AAACAACAAAATGCAAGTCCAAG 57.200 34.783 0.00 0.00 0.00 3.61
1567 1754 9.406113 CCACTCACTACCTACTTATACTTACTT 57.594 37.037 0.00 0.00 0.00 2.24
1568 1755 8.776119 TCCACTCACTACCTACTTATACTTACT 58.224 37.037 0.00 0.00 0.00 2.24
1569 1756 8.970859 TCCACTCACTACCTACTTATACTTAC 57.029 38.462 0.00 0.00 0.00 2.34
1686 1889 9.368416 GGGCCTCTAGGATTTATTAGAAATTTT 57.632 33.333 0.84 0.00 37.39 1.82
1719 1923 0.680618 CCTTGCCTTGCACAAATGGA 59.319 50.000 0.00 0.00 38.71 3.41
1826 2031 4.675671 GCGTGGATATCCCTCTAATTCTCG 60.676 50.000 19.34 8.78 35.38 4.04
1832 2037 0.601558 GCGCGTGGATATCCCTCTAA 59.398 55.000 19.34 0.00 35.38 2.10
1833 2038 1.583495 CGCGCGTGGATATCCCTCTA 61.583 60.000 24.19 0.00 35.38 2.43
1905 2135 0.814457 AGATATCGGCTCGGCTCATC 59.186 55.000 0.00 0.00 0.00 2.92
1927 2157 0.938713 CCCGTAGTGCGTGACAAAAA 59.061 50.000 0.00 0.00 39.32 1.94
1981 2215 3.210227 TCGCATTCAAACTCCACTTTCA 58.790 40.909 0.00 0.00 0.00 2.69
2078 2312 0.614979 TAGGCGCAAGAGAAGGAGGT 60.615 55.000 10.83 0.00 43.02 3.85
2150 2384 3.131478 GAATGGAACCGGTGGCGG 61.131 66.667 8.52 0.00 0.00 6.13
2208 2442 2.520020 TGTCCCGACTCGTGGTGT 60.520 61.111 0.00 0.00 0.00 4.16
2231 2465 2.813754 CAAAGAGGTGCAATTTCGGAGA 59.186 45.455 0.00 0.00 0.00 3.71
2240 2474 1.490490 ACAGGACTCAAAGAGGTGCAA 59.510 47.619 0.00 0.00 33.35 4.08
2309 2543 2.352814 CGGAGTCCGTGATGAAGAAGTT 60.353 50.000 23.83 0.00 42.73 2.66
2338 2572 1.174712 AGAAGTCGTCGTCGGGGAAA 61.175 55.000 1.55 0.00 37.69 3.13
2541 2775 3.865011 ACACATCTAGAGCAGACAGTG 57.135 47.619 0.00 0.00 43.38 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.