Multiple sequence alignment - TraesCS7A01G386500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G386500 chr7A 100.000 4361 0 0 1 4361 562169446 562173806 0.000000e+00 8054
1 TraesCS7A01G386500 chr7A 98.529 136 2 0 4080 4215 17879024 17878889 1.570000e-59 241
2 TraesCS7A01G386500 chr7D 94.938 3773 153 19 342 4083 496776623 496780388 0.000000e+00 5875
3 TraesCS7A01G386500 chr7D 89.197 361 23 7 1 347 496775558 496775916 1.860000e-118 436
4 TraesCS7A01G386500 chr7D 96.667 150 5 0 4212 4361 496780385 496780534 2.600000e-62 250
5 TraesCS7A01G386500 chr7B 94.507 3732 140 28 382 4062 524906248 524909965 0.000000e+00 5696
6 TraesCS7A01G386500 chr7B 97.183 142 4 0 4078 4219 747433996 747433855 1.570000e-59 241
7 TraesCS7A01G386500 chr7B 92.373 118 7 1 4244 4361 524909960 524910075 2.700000e-37 167
8 TraesCS7A01G386500 chr3D 96.528 144 4 1 4076 4219 603715166 603715024 2.030000e-58 237
9 TraesCS7A01G386500 chr1B 95.918 147 4 2 4077 4223 668867916 668867772 2.030000e-58 237
10 TraesCS7A01G386500 chr2B 99.231 130 1 0 4082 4211 696356229 696356100 7.290000e-58 235
11 TraesCS7A01G386500 chr6D 95.862 145 5 1 4078 4222 421801528 421801385 2.620000e-57 233
12 TraesCS7A01G386500 chr4A 95.862 145 5 1 4072 4215 645773897 645773753 2.620000e-57 233
13 TraesCS7A01G386500 chr2D 95.804 143 6 0 4078 4220 24950000 24950142 9.430000e-57 231
14 TraesCS7A01G386500 chr1A 92.169 166 9 3 4071 4233 213589100 213588936 9.430000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G386500 chr7A 562169446 562173806 4360 False 8054.0 8054 100.000000 1 4361 1 chr7A.!!$F1 4360
1 TraesCS7A01G386500 chr7D 496775558 496780534 4976 False 2187.0 5875 93.600667 1 4361 3 chr7D.!!$F1 4360
2 TraesCS7A01G386500 chr7B 524906248 524910075 3827 False 2931.5 5696 93.440000 382 4361 2 chr7B.!!$F1 3979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 1165 0.255318 GTCGACAGTCTCCCTCCCTA 59.745 60.0 11.55 0.0 0.00 3.53 F
1135 1900 0.183492 TCTGCTGGTCCAAAGCTGTT 59.817 50.0 4.85 0.0 41.42 3.16 F
1522 2287 0.320374 ATTTGTCGGTTCCTCGCTGA 59.680 50.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 2241 1.303155 ACTCAGGCCAAGCTTCAGC 60.303 57.895 5.01 9.12 42.49 4.26 R
2557 3322 1.069978 TCGAACAACCTCATCTGCACA 59.930 47.619 0.00 0.00 0.00 4.57 R
3447 4212 0.034670 GGAGCCAGCAAGAACTCCAT 60.035 55.000 3.07 0.00 46.57 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.952296 CACAATAGGCAAGGAGATGGC 59.048 52.381 0.00 0.00 45.57 4.40
62 63 1.746615 GCAAGGAGATGGCGCTCAA 60.747 57.895 7.64 0.00 36.62 3.02
63 64 1.099879 GCAAGGAGATGGCGCTCAAT 61.100 55.000 7.64 0.00 36.62 2.57
70 71 1.152963 ATGGCGCTCAATACACCCC 60.153 57.895 7.64 0.00 0.00 4.95
75 76 1.600107 GCTCAATACACCCCGACCA 59.400 57.895 0.00 0.00 0.00 4.02
88 89 1.502990 CCGACCACGTGTGCATTTCA 61.503 55.000 15.65 0.00 37.88 2.69
124 125 8.579850 TTCCATACAAATCTAAACATGAGCTT 57.420 30.769 0.00 0.00 0.00 3.74
164 167 6.707440 TTCTTTCAAAAGTCCAATGCACTA 57.293 33.333 0.00 0.00 37.31 2.74
176 179 7.573710 AGTCCAATGCACTAATACTTTATCCA 58.426 34.615 0.00 0.00 0.00 3.41
192 195 8.733092 ACTTTATCCATCTCCATTCTATCTCA 57.267 34.615 0.00 0.00 0.00 3.27
193 196 9.163894 ACTTTATCCATCTCCATTCTATCTCAA 57.836 33.333 0.00 0.00 0.00 3.02
202 216 7.215789 TCTCCATTCTATCTCAATCTTCTTGC 58.784 38.462 0.00 0.00 0.00 4.01
206 220 4.115516 TCTATCTCAATCTTCTTGCGTGC 58.884 43.478 0.00 0.00 0.00 5.34
223 237 3.126729 GCATTTTCTGCGCACCATT 57.873 47.368 5.66 0.00 41.97 3.16
232 246 0.817229 TGCGCACCATTCAAGACACA 60.817 50.000 5.66 0.00 0.00 3.72
286 300 4.863131 CCTACAAGAACTCATTGTACGTCC 59.137 45.833 0.00 0.00 41.08 4.79
290 304 2.496470 AGAACTCATTGTACGTCCCCTC 59.504 50.000 0.00 0.00 0.00 4.30
319 334 7.433708 AAAATTCATTGTACGTGACATCTCA 57.566 32.000 0.00 0.00 38.07 3.27
329 344 4.787598 ACGTGACATCTCATTTTTGCTTC 58.212 39.130 0.00 0.00 0.00 3.86
411 1136 3.438087 CGTGTGATCTGAATCCTTTTGCT 59.562 43.478 0.00 0.00 0.00 3.91
431 1156 1.679305 ATCTGGCCGTCGACAGTCT 60.679 57.895 17.16 0.00 36.17 3.24
440 1165 0.255318 GTCGACAGTCTCCCTCCCTA 59.745 60.000 11.55 0.00 0.00 3.53
508 1251 2.047274 CTTCTTCTCGGCCGGCAA 60.047 61.111 30.85 17.04 0.00 4.52
509 1252 2.358247 TTCTTCTCGGCCGGCAAC 60.358 61.111 30.85 11.20 0.00 4.17
593 1342 0.459489 CTCTTCCTCCTCGGCTTCTG 59.541 60.000 0.00 0.00 0.00 3.02
687 1437 1.004394 CCTGGACCCCTAGTTTTGGTC 59.996 57.143 8.65 8.65 46.31 4.02
726 1477 5.178252 CACCGATGCCTATTTCTGATTAGTG 59.822 44.000 0.00 0.00 0.00 2.74
735 1486 0.744414 TCTGATTAGTGCAAGCGCCC 60.744 55.000 2.29 0.00 37.32 6.13
741 1492 4.465512 GTGCAAGCGCCCATGTCG 62.466 66.667 2.29 0.00 37.32 4.35
752 1503 0.390340 CCCATGTCGAGTGTGTCCTG 60.390 60.000 0.00 0.00 0.00 3.86
753 1504 0.318441 CCATGTCGAGTGTGTCCTGT 59.682 55.000 0.00 0.00 0.00 4.00
825 1583 6.693045 GCACCCCACCCATTAATTTATAGAGA 60.693 42.308 0.00 0.00 0.00 3.10
827 1590 7.394359 CACCCCACCCATTAATTTATAGAGATG 59.606 40.741 0.00 0.00 0.00 2.90
877 1640 0.595825 GCAATGGCGAAATAGCAGGC 60.596 55.000 0.00 0.00 39.27 4.85
880 1643 1.160329 ATGGCGAAATAGCAGGCGAC 61.160 55.000 0.00 0.00 39.27 5.19
881 1644 1.813753 GGCGAAATAGCAGGCGACA 60.814 57.895 0.00 0.00 39.27 4.35
887 1650 1.605058 AATAGCAGGCGACACGGTCT 61.605 55.000 0.00 0.00 0.00 3.85
936 1699 4.283978 AGCATTGGTGGAAAATGTGAATCA 59.716 37.500 0.00 0.00 37.35 2.57
947 1710 8.756927 TGGAAAATGTGAATCAAAGGCATAATA 58.243 29.630 0.00 0.00 0.00 0.98
961 1725 8.494347 CAAAGGCATAATAATTTCTCTCTCGAG 58.506 37.037 5.93 5.93 38.67 4.04
964 1728 6.128688 GGCATAATAATTTCTCTCTCGAGTGC 60.129 42.308 13.13 9.17 38.45 4.40
995 1760 6.903883 TTACATATCGGAAGTTTCTTCAGC 57.096 37.500 10.88 0.00 0.00 4.26
1010 1775 4.019858 TCTTCAGCTAGTATGCAGTCTGT 58.980 43.478 0.93 0.00 34.99 3.41
1011 1776 3.790152 TCAGCTAGTATGCAGTCTGTG 57.210 47.619 0.93 0.00 34.99 3.66
1068 1833 4.093011 GGCTATCAGGATCTATCAGTGGT 58.907 47.826 0.00 0.00 0.00 4.16
1072 1837 6.127758 GCTATCAGGATCTATCAGTGGTACAG 60.128 46.154 0.00 0.00 41.80 2.74
1135 1900 0.183492 TCTGCTGGTCCAAAGCTGTT 59.817 50.000 4.85 0.00 41.42 3.16
1368 2133 7.974504 AGGAAGTTATTCTTTTGTACAGGAGA 58.025 34.615 0.00 0.81 36.40 3.71
1369 2134 8.606830 AGGAAGTTATTCTTTTGTACAGGAGAT 58.393 33.333 10.06 5.15 36.40 2.75
1379 2144 4.623932 TGTACAGGAGATTGAAGTTGCT 57.376 40.909 0.00 0.00 0.00 3.91
1402 2167 7.276218 TGCTTCAGTTTTGTTTGAATGAGAAAG 59.724 33.333 0.00 0.00 33.25 2.62
1462 2227 4.826733 GGAATTTGTTTTTGGGCAAAGGAT 59.173 37.500 0.00 0.00 37.89 3.24
1522 2287 0.320374 ATTTGTCGGTTCCTCGCTGA 59.680 50.000 0.00 0.00 0.00 4.26
1587 2352 5.389307 GCGAGTGTTTGAAGAGATCTTTGAG 60.389 44.000 0.00 0.00 36.11 3.02
1777 2542 2.746904 CGACTGGGTAAATCAATGCACA 59.253 45.455 0.00 0.00 0.00 4.57
1791 2556 3.497103 ATGCACAGCTATGCCATAAGA 57.503 42.857 15.69 0.00 45.50 2.10
1893 2658 6.252036 GCATATGCTCTTTTGAACAATTCG 57.748 37.500 20.64 0.00 38.21 3.34
1948 2713 6.929606 GCTTTCTGGTCTTACTAGAACTCAAA 59.070 38.462 5.48 0.00 43.82 2.69
1986 2751 7.761249 GCAATCCAGTATTTTTCTGTTATGCTT 59.239 33.333 0.00 0.00 33.79 3.91
2205 2970 5.926542 TCTCTTTGATCAACTGACGGTTAAG 59.073 40.000 7.89 0.00 36.23 1.85
2284 3049 4.009675 TGAAGCCACCACATTACTCAATC 58.990 43.478 0.00 0.00 0.00 2.67
2510 3275 9.528018 TGTATTTGACTCATTGGAAAAGAAAAC 57.472 29.630 0.00 0.00 0.00 2.43
2557 3322 4.604490 TGAAGGGGTACTTATCTTTTGGGT 59.396 41.667 0.00 0.00 40.21 4.51
2599 3364 7.134163 TCGATTATGTCAATTAATGCAGCAAG 58.866 34.615 0.00 0.00 0.00 4.01
2724 3489 3.114606 TGCCTCCATGGAGAAAGATACA 58.885 45.455 38.37 21.47 44.53 2.29
2901 3666 6.218019 TGAAATGTTTCAGCAAATGGAAGAG 58.782 36.000 4.16 0.00 41.88 2.85
3075 3840 1.622607 TATTGGGTCGGGCAGGACAG 61.623 60.000 9.66 0.00 38.70 3.51
3093 3858 7.038659 CAGGACAGTTAGAAGAAGGATACAAG 58.961 42.308 0.00 0.00 41.41 3.16
3236 4001 0.324943 CCACAGGACCCAGGTACTTG 59.675 60.000 0.00 0.00 37.14 3.16
3260 4025 6.262944 TGTGCTTTGATTTCAGAAGTGTATGT 59.737 34.615 0.00 0.00 0.00 2.29
3315 4080 2.238437 GGCTAGCGCTAACGGAAGC 61.238 63.158 19.37 18.23 40.57 3.86
3381 4146 2.374170 GGAAGTAGGGAGGGTGTTTTGA 59.626 50.000 0.00 0.00 0.00 2.69
3447 4212 2.572556 AGTCGAGGTCTGTAGAGGAAGA 59.427 50.000 0.00 0.00 0.00 2.87
3463 4238 1.742268 GAAGATGGAGTTCTTGCTGGC 59.258 52.381 0.00 0.00 36.10 4.85
3586 4363 0.181114 TCTTGAAGCGATGGGGGATG 59.819 55.000 0.00 0.00 0.00 3.51
3624 4401 0.840103 CATGTGATACAGTCGACGCG 59.160 55.000 10.46 3.53 0.00 6.01
3681 4458 4.956075 TCAGTAGGACTATTGCAGATGACA 59.044 41.667 0.00 0.00 0.00 3.58
3756 4533 0.036388 GGAACGGCAGAATCCAGTGA 60.036 55.000 8.13 0.00 33.30 3.41
3821 4598 1.340889 TGAACAAATTCCCTGCACTGC 59.659 47.619 0.00 0.00 33.49 4.40
3922 4708 3.488310 CACTGCTGAACATCTGTTTTTGC 59.512 43.478 0.00 3.64 38.56 3.68
3940 4726 1.780025 GCCGGCTGCAGAATTAGAGC 61.780 60.000 22.15 5.73 40.77 4.09
3944 4730 1.407989 GGCTGCAGAATTAGAGCTGGT 60.408 52.381 20.43 0.00 32.83 4.00
3959 4746 2.031465 GGTTCGGTTCCGCCAGAA 59.969 61.111 6.35 0.00 36.97 3.02
3998 4786 1.203313 AGAGTAGGCACCCTGGAGAAA 60.203 52.381 0.00 0.00 34.61 2.52
4079 4867 0.538287 GGCACCAGCTTCAACTCCTT 60.538 55.000 0.00 0.00 41.70 3.36
4080 4868 0.595095 GCACCAGCTTCAACTCCTTG 59.405 55.000 0.00 0.00 37.91 3.61
4081 4869 1.815408 GCACCAGCTTCAACTCCTTGA 60.815 52.381 0.00 0.00 37.91 3.02
4082 4870 2.149578 CACCAGCTTCAACTCCTTGAG 58.850 52.381 0.00 0.00 37.70 3.02
4083 4871 1.072965 ACCAGCTTCAACTCCTTGAGG 59.927 52.381 0.00 0.00 37.70 3.86
4087 4875 2.575805 CTTCAACTCCTTGAGGCCTT 57.424 50.000 6.77 0.00 37.70 4.35
4088 4876 2.157738 CTTCAACTCCTTGAGGCCTTG 58.842 52.381 6.77 0.00 37.70 3.61
4089 4877 1.140312 TCAACTCCTTGAGGCCTTGT 58.860 50.000 6.77 0.00 33.35 3.16
4090 4878 1.494721 TCAACTCCTTGAGGCCTTGTT 59.505 47.619 6.77 3.11 33.35 2.83
4091 4879 1.882623 CAACTCCTTGAGGCCTTGTTC 59.117 52.381 6.77 0.00 33.35 3.18
4092 4880 0.035458 ACTCCTTGAGGCCTTGTTCG 59.965 55.000 6.77 0.00 33.35 3.95
4093 4881 0.674895 CTCCTTGAGGCCTTGTTCGG 60.675 60.000 6.77 3.80 34.44 4.30
4094 4882 1.073199 CCTTGAGGCCTTGTTCGGT 59.927 57.895 6.77 0.00 0.00 4.69
4095 4883 0.537371 CCTTGAGGCCTTGTTCGGTT 60.537 55.000 6.77 0.00 0.00 4.44
4096 4884 0.593128 CTTGAGGCCTTGTTCGGTTG 59.407 55.000 6.77 0.00 0.00 3.77
4097 4885 0.181587 TTGAGGCCTTGTTCGGTTGA 59.818 50.000 6.77 0.00 0.00 3.18
4098 4886 0.250295 TGAGGCCTTGTTCGGTTGAG 60.250 55.000 6.77 0.00 0.00 3.02
4099 4887 0.955919 GAGGCCTTGTTCGGTTGAGG 60.956 60.000 6.77 0.00 0.00 3.86
4100 4888 1.228154 GGCCTTGTTCGGTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
4101 4889 0.035739 GGCCTTGTTCGGTTGAGGTA 59.964 55.000 0.00 0.00 0.00 3.08
4102 4890 1.439679 GCCTTGTTCGGTTGAGGTAG 58.560 55.000 0.00 0.00 0.00 3.18
4103 4891 1.270678 GCCTTGTTCGGTTGAGGTAGT 60.271 52.381 0.00 0.00 0.00 2.73
4104 4892 2.809299 GCCTTGTTCGGTTGAGGTAGTT 60.809 50.000 0.00 0.00 0.00 2.24
4105 4893 3.473625 CCTTGTTCGGTTGAGGTAGTTT 58.526 45.455 0.00 0.00 0.00 2.66
4106 4894 3.881089 CCTTGTTCGGTTGAGGTAGTTTT 59.119 43.478 0.00 0.00 0.00 2.43
4107 4895 4.337274 CCTTGTTCGGTTGAGGTAGTTTTT 59.663 41.667 0.00 0.00 0.00 1.94
4108 4896 4.886247 TGTTCGGTTGAGGTAGTTTTTG 57.114 40.909 0.00 0.00 0.00 2.44
4109 4897 4.515361 TGTTCGGTTGAGGTAGTTTTTGA 58.485 39.130 0.00 0.00 0.00 2.69
4110 4898 4.942483 TGTTCGGTTGAGGTAGTTTTTGAA 59.058 37.500 0.00 0.00 0.00 2.69
4111 4899 5.065474 TGTTCGGTTGAGGTAGTTTTTGAAG 59.935 40.000 0.00 0.00 0.00 3.02
4112 4900 4.131596 TCGGTTGAGGTAGTTTTTGAAGG 58.868 43.478 0.00 0.00 0.00 3.46
4113 4901 3.252458 CGGTTGAGGTAGTTTTTGAAGGG 59.748 47.826 0.00 0.00 0.00 3.95
4114 4902 3.572682 GGTTGAGGTAGTTTTTGAAGGGG 59.427 47.826 0.00 0.00 0.00 4.79
4115 4903 4.466827 GTTGAGGTAGTTTTTGAAGGGGA 58.533 43.478 0.00 0.00 0.00 4.81
4116 4904 4.799715 TGAGGTAGTTTTTGAAGGGGAA 57.200 40.909 0.00 0.00 0.00 3.97
4117 4905 5.333566 TGAGGTAGTTTTTGAAGGGGAAT 57.666 39.130 0.00 0.00 0.00 3.01
4118 4906 5.076873 TGAGGTAGTTTTTGAAGGGGAATG 58.923 41.667 0.00 0.00 0.00 2.67
4119 4907 4.416516 AGGTAGTTTTTGAAGGGGAATGG 58.583 43.478 0.00 0.00 0.00 3.16
4120 4908 3.056107 GGTAGTTTTTGAAGGGGAATGGC 60.056 47.826 0.00 0.00 0.00 4.40
4121 4909 2.688477 AGTTTTTGAAGGGGAATGGCA 58.312 42.857 0.00 0.00 0.00 4.92
4122 4910 2.634453 AGTTTTTGAAGGGGAATGGCAG 59.366 45.455 0.00 0.00 0.00 4.85
4123 4911 1.643310 TTTTGAAGGGGAATGGCAGG 58.357 50.000 0.00 0.00 0.00 4.85
4124 4912 0.252193 TTTGAAGGGGAATGGCAGGG 60.252 55.000 0.00 0.00 0.00 4.45
4125 4913 1.442886 TTGAAGGGGAATGGCAGGGT 61.443 55.000 0.00 0.00 0.00 4.34
4126 4914 1.388133 GAAGGGGAATGGCAGGGTT 59.612 57.895 0.00 0.00 0.00 4.11
4127 4915 0.252239 GAAGGGGAATGGCAGGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
4128 4916 0.545071 AAGGGGAATGGCAGGGTTTG 60.545 55.000 0.00 0.00 0.00 2.93
4129 4917 1.078347 GGGGAATGGCAGGGTTTGA 59.922 57.895 0.00 0.00 0.00 2.69
4130 4918 0.972471 GGGGAATGGCAGGGTTTGAG 60.972 60.000 0.00 0.00 0.00 3.02
4131 4919 0.972471 GGGAATGGCAGGGTTTGAGG 60.972 60.000 0.00 0.00 0.00 3.86
4132 4920 0.972471 GGAATGGCAGGGTTTGAGGG 60.972 60.000 0.00 0.00 0.00 4.30
4133 4921 0.972471 GAATGGCAGGGTTTGAGGGG 60.972 60.000 0.00 0.00 0.00 4.79
4134 4922 2.460476 AATGGCAGGGTTTGAGGGGG 62.460 60.000 0.00 0.00 0.00 5.40
4135 4923 3.264845 GGCAGGGTTTGAGGGGGA 61.265 66.667 0.00 0.00 0.00 4.81
4136 4924 2.626467 GGCAGGGTTTGAGGGGGAT 61.626 63.158 0.00 0.00 0.00 3.85
4137 4925 1.388133 GCAGGGTTTGAGGGGGATT 59.612 57.895 0.00 0.00 0.00 3.01
4138 4926 0.629058 GCAGGGTTTGAGGGGGATTA 59.371 55.000 0.00 0.00 0.00 1.75
4139 4927 1.410224 GCAGGGTTTGAGGGGGATTAG 60.410 57.143 0.00 0.00 0.00 1.73
4140 4928 2.205342 CAGGGTTTGAGGGGGATTAGA 58.795 52.381 0.00 0.00 0.00 2.10
4141 4929 2.785857 CAGGGTTTGAGGGGGATTAGAT 59.214 50.000 0.00 0.00 0.00 1.98
4142 4930 3.056832 AGGGTTTGAGGGGGATTAGATC 58.943 50.000 0.00 0.00 0.00 2.75
4153 4941 3.704800 GGATTAGATCCCCTACAAGCC 57.295 52.381 0.00 0.00 43.88 4.35
4154 4942 2.979678 GGATTAGATCCCCTACAAGCCA 59.020 50.000 0.00 0.00 43.88 4.75
4155 4943 3.394606 GGATTAGATCCCCTACAAGCCAA 59.605 47.826 0.00 0.00 43.88 4.52
4156 4944 4.141251 GGATTAGATCCCCTACAAGCCAAA 60.141 45.833 0.00 0.00 43.88 3.28
4157 4945 4.938575 TTAGATCCCCTACAAGCCAAAA 57.061 40.909 0.00 0.00 0.00 2.44
4158 4946 5.466127 TTAGATCCCCTACAAGCCAAAAT 57.534 39.130 0.00 0.00 0.00 1.82
4159 4947 3.903467 AGATCCCCTACAAGCCAAAATC 58.097 45.455 0.00 0.00 0.00 2.17
4160 4948 2.525105 TCCCCTACAAGCCAAAATCC 57.475 50.000 0.00 0.00 0.00 3.01
4161 4949 2.000048 TCCCCTACAAGCCAAAATCCT 59.000 47.619 0.00 0.00 0.00 3.24
4162 4950 2.025321 TCCCCTACAAGCCAAAATCCTC 60.025 50.000 0.00 0.00 0.00 3.71
4163 4951 2.024941 CCCCTACAAGCCAAAATCCTCT 60.025 50.000 0.00 0.00 0.00 3.69
4164 4952 3.282885 CCCTACAAGCCAAAATCCTCTC 58.717 50.000 0.00 0.00 0.00 3.20
4165 4953 3.282885 CCTACAAGCCAAAATCCTCTCC 58.717 50.000 0.00 0.00 0.00 3.71
4166 4954 2.978156 ACAAGCCAAAATCCTCTCCA 57.022 45.000 0.00 0.00 0.00 3.86
4167 4955 3.243359 ACAAGCCAAAATCCTCTCCAA 57.757 42.857 0.00 0.00 0.00 3.53
4168 4956 3.782992 ACAAGCCAAAATCCTCTCCAAT 58.217 40.909 0.00 0.00 0.00 3.16
4169 4957 3.766051 ACAAGCCAAAATCCTCTCCAATC 59.234 43.478 0.00 0.00 0.00 2.67
4170 4958 3.023939 AGCCAAAATCCTCTCCAATCC 57.976 47.619 0.00 0.00 0.00 3.01
4171 4959 2.312741 AGCCAAAATCCTCTCCAATCCA 59.687 45.455 0.00 0.00 0.00 3.41
4172 4960 2.428530 GCCAAAATCCTCTCCAATCCAC 59.571 50.000 0.00 0.00 0.00 4.02
4173 4961 3.879321 GCCAAAATCCTCTCCAATCCACT 60.879 47.826 0.00 0.00 0.00 4.00
4174 4962 3.950395 CCAAAATCCTCTCCAATCCACTC 59.050 47.826 0.00 0.00 0.00 3.51
4175 4963 3.941704 AAATCCTCTCCAATCCACTCC 57.058 47.619 0.00 0.00 0.00 3.85
4176 4964 2.575921 ATCCTCTCCAATCCACTCCA 57.424 50.000 0.00 0.00 0.00 3.86
4177 4965 2.342406 TCCTCTCCAATCCACTCCAA 57.658 50.000 0.00 0.00 0.00 3.53
4178 4966 2.850833 TCCTCTCCAATCCACTCCAAT 58.149 47.619 0.00 0.00 0.00 3.16
4179 4967 2.774234 TCCTCTCCAATCCACTCCAATC 59.226 50.000 0.00 0.00 0.00 2.67
4180 4968 2.158696 CCTCTCCAATCCACTCCAATCC 60.159 54.545 0.00 0.00 0.00 3.01
4181 4969 1.846439 TCTCCAATCCACTCCAATCCC 59.154 52.381 0.00 0.00 0.00 3.85
4182 4970 0.926293 TCCAATCCACTCCAATCCCC 59.074 55.000 0.00 0.00 0.00 4.81
4183 4971 0.929244 CCAATCCACTCCAATCCCCT 59.071 55.000 0.00 0.00 0.00 4.79
4184 4972 1.288932 CCAATCCACTCCAATCCCCTT 59.711 52.381 0.00 0.00 0.00 3.95
4185 4973 2.381911 CAATCCACTCCAATCCCCTTG 58.618 52.381 0.00 0.00 34.42 3.61
4200 4988 3.298686 CCCTTGGGAGGAGGATTAAAC 57.701 52.381 0.00 0.00 46.74 2.01
4201 4989 2.421529 CCCTTGGGAGGAGGATTAAACG 60.422 54.545 0.00 0.00 46.74 3.60
4202 4990 2.504175 CCTTGGGAGGAGGATTAAACGA 59.496 50.000 0.00 0.00 46.74 3.85
4203 4991 3.054655 CCTTGGGAGGAGGATTAAACGAA 60.055 47.826 0.00 0.00 46.74 3.85
4204 4992 3.622166 TGGGAGGAGGATTAAACGAAC 57.378 47.619 0.00 0.00 0.00 3.95
4205 4993 2.907696 TGGGAGGAGGATTAAACGAACA 59.092 45.455 0.00 0.00 0.00 3.18
4206 4994 3.328343 TGGGAGGAGGATTAAACGAACAA 59.672 43.478 0.00 0.00 0.00 2.83
4207 4995 3.939592 GGGAGGAGGATTAAACGAACAAG 59.060 47.826 0.00 0.00 0.00 3.16
4208 4996 3.939592 GGAGGAGGATTAAACGAACAAGG 59.060 47.826 0.00 0.00 0.00 3.61
4209 4997 3.344515 AGGAGGATTAAACGAACAAGGC 58.655 45.455 0.00 0.00 0.00 4.35
4210 4998 2.422479 GGAGGATTAAACGAACAAGGCC 59.578 50.000 0.00 0.00 0.00 5.19
4285 5073 4.803329 ATCAGATATGGGAAAAGCAGGT 57.197 40.909 0.00 0.00 0.00 4.00
4286 5074 4.156455 TCAGATATGGGAAAAGCAGGTC 57.844 45.455 0.00 0.00 0.00 3.85
4292 5080 1.073125 TGGGAAAAGCAGGTCGAATGA 59.927 47.619 3.17 0.00 0.00 2.57
4335 5123 3.063452 CAGAAAGTAGCGTGTGTTTGTGT 59.937 43.478 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.269673 GGGCTAGGCGAGTTTAGCTAC 60.270 57.143 10.58 0.00 41.52 3.58
6 7 1.038280 GGGCTAGGCGAGTTTAGCTA 58.962 55.000 10.58 0.00 41.52 3.32
56 57 1.520787 GGTCGGGGTGTATTGAGCG 60.521 63.158 0.00 0.00 0.00 5.03
62 63 1.909781 ACACGTGGTCGGGGTGTAT 60.910 57.895 21.57 0.00 45.68 2.29
63 64 2.521465 ACACGTGGTCGGGGTGTA 60.521 61.111 21.57 0.00 45.68 2.90
70 71 0.306228 TTGAAATGCACACGTGGTCG 59.694 50.000 21.57 9.01 43.34 4.79
75 76 2.288152 GGGTGAATTGAAATGCACACGT 60.288 45.455 14.65 0.00 45.13 4.49
88 89 6.204555 AGATTTGTATGGAATGGGGTGAATT 58.795 36.000 0.00 0.00 0.00 2.17
176 179 7.879160 GCAAGAAGATTGAGATAGAATGGAGAT 59.121 37.037 0.00 0.00 0.00 2.75
192 195 4.232221 CAGAAAATGCACGCAAGAAGATT 58.768 39.130 0.00 0.00 43.62 2.40
193 196 3.829948 CAGAAAATGCACGCAAGAAGAT 58.170 40.909 0.00 0.00 43.62 2.40
194 197 3.272439 CAGAAAATGCACGCAAGAAGA 57.728 42.857 0.00 0.00 43.62 2.87
206 220 2.350899 TGAATGGTGCGCAGAAAATG 57.649 45.000 12.22 0.00 0.00 2.32
260 274 6.331061 ACGTACAATGAGTTCTTGTAGGATC 58.669 40.000 17.66 0.00 42.94 3.36
273 287 3.328382 TTTGAGGGGACGTACAATGAG 57.672 47.619 0.00 0.00 0.00 2.90
336 351 9.672673 CTCAGGAATTTAGAAACTTAGGAATGA 57.327 33.333 0.00 0.00 0.00 2.57
337 352 9.672673 TCTCAGGAATTTAGAAACTTAGGAATG 57.327 33.333 0.00 0.00 0.00 2.67
361 1086 6.264067 GCATATCAAGGGCTTTCTTTGTATCT 59.736 38.462 0.00 0.00 0.00 1.98
371 1096 1.340991 ACGGTGCATATCAAGGGCTTT 60.341 47.619 0.00 0.00 0.00 3.51
411 1136 1.934220 GACTGTCGACGGCCAGATGA 61.934 60.000 24.25 0.00 32.93 2.92
431 1156 1.802553 CGGAAGGAAATAGGGAGGGA 58.197 55.000 0.00 0.00 0.00 4.20
440 1165 1.745489 GTCGCCAGCGGAAGGAAAT 60.745 57.895 12.71 0.00 40.25 2.17
650 1399 2.266055 GCAGTGCTCTAGGGCGTT 59.734 61.111 10.70 0.00 34.52 4.84
687 1437 1.016627 CGGTGCAATGGACATACCTG 58.983 55.000 7.29 0.00 39.86 4.00
726 1477 3.869272 CTCGACATGGGCGCTTGC 61.869 66.667 15.44 8.33 38.11 4.01
735 1486 2.061773 GAACAGGACACACTCGACATG 58.938 52.381 0.00 0.00 0.00 3.21
741 1492 3.733337 ACATTCAGAACAGGACACACTC 58.267 45.455 0.00 0.00 0.00 3.51
752 1503 4.990543 TTCGTCACATGACATTCAGAAC 57.009 40.909 12.32 0.00 44.99 3.01
753 1504 5.700373 TCAATTCGTCACATGACATTCAGAA 59.300 36.000 12.32 7.17 44.99 3.02
779 1536 6.088824 GTGCACATCTAAATTTCCAGAACAG 58.911 40.000 13.17 0.00 0.00 3.16
877 1640 4.209112 GCTTTTAAAGAAAGACCGTGTCG 58.791 43.478 9.10 0.00 37.67 4.35
880 1643 7.463469 AATTTGCTTTTAAAGAAAGACCGTG 57.537 32.000 9.10 0.00 0.00 4.94
881 1644 8.387354 CAAAATTTGCTTTTAAAGAAAGACCGT 58.613 29.630 9.10 0.00 35.27 4.83
954 1718 4.307432 TGTAAAAAGGAAGCACTCGAGAG 58.693 43.478 21.68 13.24 0.00 3.20
961 1725 6.431198 TTCCGATATGTAAAAAGGAAGCAC 57.569 37.500 0.00 0.00 33.39 4.40
995 1760 5.473931 ACTTTGACACAGACTGCATACTAG 58.526 41.667 1.25 0.00 0.00 2.57
1010 1775 8.653338 GCACTATAATCTTAACGAACTTTGACA 58.347 33.333 0.00 0.00 0.00 3.58
1011 1776 8.114905 GGCACTATAATCTTAACGAACTTTGAC 58.885 37.037 0.00 0.00 0.00 3.18
1068 1833 4.669700 TCTTACTAGAACCCACAGCTGTA 58.330 43.478 21.20 0.27 0.00 2.74
1072 1837 3.261137 ACCTTCTTACTAGAACCCACAGC 59.739 47.826 0.00 0.00 35.49 4.40
1135 1900 5.622460 GCTTCTTTAGAGACCGAACATCTGA 60.622 44.000 0.00 0.00 0.00 3.27
1299 2064 2.170166 TCAACCATGGCAGAATTCCAC 58.830 47.619 13.04 0.00 31.05 4.02
1379 2144 7.322664 AGCTTTCTCATTCAAACAAAACTGAA 58.677 30.769 0.00 0.00 36.08 3.02
1402 2167 6.749118 CAGCTCTTCAAACCAAATGTAATAGC 59.251 38.462 0.00 0.00 0.00 2.97
1462 2227 2.352651 GCTTCAGCGAATCTACATGCAA 59.647 45.455 0.00 0.00 0.00 4.08
1476 2241 1.303155 ACTCAGGCCAAGCTTCAGC 60.303 57.895 5.01 9.12 42.49 4.26
1587 2352 7.377766 TGAAGTGTAAGCAACAATATCCTTC 57.622 36.000 10.23 10.23 40.63 3.46
1777 2542 5.839517 ATTCCTCTTCTTATGGCATAGCT 57.160 39.130 7.35 0.00 0.00 3.32
1791 2556 1.902508 TCTGAGACGCCAATTCCTCTT 59.097 47.619 0.00 0.00 0.00 2.85
1893 2658 2.033194 CGAAGCCACGGTTCCCTTC 61.033 63.158 0.00 0.00 36.81 3.46
1986 2751 9.770097 GAATCTGGAGTTACTTTATGATGATGA 57.230 33.333 0.00 0.00 0.00 2.92
2205 2970 3.318275 TCACGTTATAGGAGACTGCATCC 59.682 47.826 0.00 0.00 43.88 3.51
2284 3049 6.474427 GGTGCAATACATTCTTTCATCATGTG 59.526 38.462 0.00 0.00 33.19 3.21
2510 3275 1.962807 TGGCTGTCCATGAAAACAAGG 59.037 47.619 0.00 0.00 37.47 3.61
2557 3322 1.069978 TCGAACAACCTCATCTGCACA 59.930 47.619 0.00 0.00 0.00 4.57
3093 3858 8.653338 TCAGTCAACGACAATAGCTTTATAAAC 58.347 33.333 0.00 0.00 34.60 2.01
3236 4001 6.672147 ACATACACTTCTGAAATCAAAGCAC 58.328 36.000 0.00 0.00 0.00 4.40
3260 4025 3.516586 TCATTCCACTGTCCTTCCTGTA 58.483 45.455 0.00 0.00 0.00 2.74
3315 4080 3.503748 AGCCAGGAAGTTTCTTTGAATCG 59.496 43.478 0.00 0.00 0.00 3.34
3447 4212 0.034670 GGAGCCAGCAAGAACTCCAT 60.035 55.000 3.07 0.00 46.57 3.41
3487 4262 1.202592 TGAACTACGGCACAGCTTGAA 60.203 47.619 0.00 0.00 0.00 2.69
3586 4363 1.660917 GATCGATCGGGGTCTCACC 59.339 63.158 16.41 0.00 37.60 4.02
3597 4374 4.083271 TCGACTGTATCACATGGATCGATC 60.083 45.833 17.36 17.36 37.44 3.69
3654 4431 6.496218 TCATCTGCAATAGTCCTACTGATGAT 59.504 38.462 0.00 0.29 39.35 2.45
3756 4533 3.761897 TCGTCCAATCAGGGAATTTTGT 58.238 40.909 0.00 0.00 39.05 2.83
3877 4654 6.408039 GTGAAAATATGACGCGTCTACATTTG 59.592 38.462 36.27 0.00 0.00 2.32
3922 4708 0.179062 AGCTCTAATTCTGCAGCCGG 60.179 55.000 9.47 0.00 31.81 6.13
3940 4726 2.725203 TTCTGGCGGAACCGAACCAG 62.725 60.000 23.86 23.86 44.95 4.00
3944 4730 1.302192 CCTTTCTGGCGGAACCGAA 60.302 57.895 17.63 3.34 43.94 4.30
4010 4798 2.601804 GGTTCTCTCTTCTCTGCGAAC 58.398 52.381 0.00 0.00 0.00 3.95
4079 4867 0.250295 CTCAACCGAACAAGGCCTCA 60.250 55.000 5.23 0.00 33.69 3.86
4080 4868 0.955919 CCTCAACCGAACAAGGCCTC 60.956 60.000 5.23 0.00 33.69 4.70
4081 4869 1.073199 CCTCAACCGAACAAGGCCT 59.927 57.895 0.00 0.00 33.69 5.19
4082 4870 0.035739 TACCTCAACCGAACAAGGCC 59.964 55.000 0.00 0.00 31.79 5.19
4083 4871 1.270678 ACTACCTCAACCGAACAAGGC 60.271 52.381 0.00 0.00 31.79 4.35
4084 4872 2.833631 ACTACCTCAACCGAACAAGG 57.166 50.000 0.00 0.00 34.94 3.61
4085 4873 5.065474 TCAAAAACTACCTCAACCGAACAAG 59.935 40.000 0.00 0.00 0.00 3.16
4086 4874 4.942483 TCAAAAACTACCTCAACCGAACAA 59.058 37.500 0.00 0.00 0.00 2.83
4087 4875 4.515361 TCAAAAACTACCTCAACCGAACA 58.485 39.130 0.00 0.00 0.00 3.18
4088 4876 5.488645 TTCAAAAACTACCTCAACCGAAC 57.511 39.130 0.00 0.00 0.00 3.95
4089 4877 4.577283 CCTTCAAAAACTACCTCAACCGAA 59.423 41.667 0.00 0.00 0.00 4.30
4090 4878 4.131596 CCTTCAAAAACTACCTCAACCGA 58.868 43.478 0.00 0.00 0.00 4.69
4091 4879 3.252458 CCCTTCAAAAACTACCTCAACCG 59.748 47.826 0.00 0.00 0.00 4.44
4092 4880 3.572682 CCCCTTCAAAAACTACCTCAACC 59.427 47.826 0.00 0.00 0.00 3.77
4093 4881 4.466827 TCCCCTTCAAAAACTACCTCAAC 58.533 43.478 0.00 0.00 0.00 3.18
4094 4882 4.799715 TCCCCTTCAAAAACTACCTCAA 57.200 40.909 0.00 0.00 0.00 3.02
4095 4883 4.799715 TTCCCCTTCAAAAACTACCTCA 57.200 40.909 0.00 0.00 0.00 3.86
4096 4884 4.462834 CCATTCCCCTTCAAAAACTACCTC 59.537 45.833 0.00 0.00 0.00 3.85
4097 4885 4.416516 CCATTCCCCTTCAAAAACTACCT 58.583 43.478 0.00 0.00 0.00 3.08
4098 4886 3.056107 GCCATTCCCCTTCAAAAACTACC 60.056 47.826 0.00 0.00 0.00 3.18
4099 4887 3.576550 TGCCATTCCCCTTCAAAAACTAC 59.423 43.478 0.00 0.00 0.00 2.73
4100 4888 3.831911 CTGCCATTCCCCTTCAAAAACTA 59.168 43.478 0.00 0.00 0.00 2.24
4101 4889 2.634453 CTGCCATTCCCCTTCAAAAACT 59.366 45.455 0.00 0.00 0.00 2.66
4102 4890 2.289631 CCTGCCATTCCCCTTCAAAAAC 60.290 50.000 0.00 0.00 0.00 2.43
4103 4891 1.977129 CCTGCCATTCCCCTTCAAAAA 59.023 47.619 0.00 0.00 0.00 1.94
4104 4892 1.643310 CCTGCCATTCCCCTTCAAAA 58.357 50.000 0.00 0.00 0.00 2.44
4105 4893 0.252193 CCCTGCCATTCCCCTTCAAA 60.252 55.000 0.00 0.00 0.00 2.69
4106 4894 1.387737 CCCTGCCATTCCCCTTCAA 59.612 57.895 0.00 0.00 0.00 2.69
4107 4895 1.442886 AACCCTGCCATTCCCCTTCA 61.443 55.000 0.00 0.00 0.00 3.02
4108 4896 0.252239 AAACCCTGCCATTCCCCTTC 60.252 55.000 0.00 0.00 0.00 3.46
4109 4897 0.545071 CAAACCCTGCCATTCCCCTT 60.545 55.000 0.00 0.00 0.00 3.95
4110 4898 1.079073 CAAACCCTGCCATTCCCCT 59.921 57.895 0.00 0.00 0.00 4.79
4111 4899 0.972471 CTCAAACCCTGCCATTCCCC 60.972 60.000 0.00 0.00 0.00 4.81
4112 4900 0.972471 CCTCAAACCCTGCCATTCCC 60.972 60.000 0.00 0.00 0.00 3.97
4113 4901 0.972471 CCCTCAAACCCTGCCATTCC 60.972 60.000 0.00 0.00 0.00 3.01
4114 4902 0.972471 CCCCTCAAACCCTGCCATTC 60.972 60.000 0.00 0.00 0.00 2.67
4115 4903 1.079073 CCCCTCAAACCCTGCCATT 59.921 57.895 0.00 0.00 0.00 3.16
4116 4904 2.772924 CCCCTCAAACCCTGCCAT 59.227 61.111 0.00 0.00 0.00 4.40
4117 4905 3.589542 CCCCCTCAAACCCTGCCA 61.590 66.667 0.00 0.00 0.00 4.92
4118 4906 2.168272 AATCCCCCTCAAACCCTGCC 62.168 60.000 0.00 0.00 0.00 4.85
4119 4907 0.629058 TAATCCCCCTCAAACCCTGC 59.371 55.000 0.00 0.00 0.00 4.85
4120 4908 2.205342 TCTAATCCCCCTCAAACCCTG 58.795 52.381 0.00 0.00 0.00 4.45
4121 4909 2.680439 TCTAATCCCCCTCAAACCCT 57.320 50.000 0.00 0.00 0.00 4.34
4122 4910 2.108425 GGATCTAATCCCCCTCAAACCC 59.892 54.545 0.00 0.00 43.88 4.11
4123 4911 3.510531 GGATCTAATCCCCCTCAAACC 57.489 52.381 0.00 0.00 43.88 3.27
4134 4922 4.706842 TTGGCTTGTAGGGGATCTAATC 57.293 45.455 0.00 0.00 0.00 1.75
4135 4923 5.466127 TTTTGGCTTGTAGGGGATCTAAT 57.534 39.130 0.00 0.00 0.00 1.73
4136 4924 4.938575 TTTTGGCTTGTAGGGGATCTAA 57.061 40.909 0.00 0.00 0.00 2.10
4137 4925 4.141251 GGATTTTGGCTTGTAGGGGATCTA 60.141 45.833 0.00 0.00 0.00 1.98
4138 4926 3.373110 GGATTTTGGCTTGTAGGGGATCT 60.373 47.826 0.00 0.00 0.00 2.75
4139 4927 2.959030 GGATTTTGGCTTGTAGGGGATC 59.041 50.000 0.00 0.00 0.00 3.36
4140 4928 2.587307 AGGATTTTGGCTTGTAGGGGAT 59.413 45.455 0.00 0.00 0.00 3.85
4141 4929 2.000048 AGGATTTTGGCTTGTAGGGGA 59.000 47.619 0.00 0.00 0.00 4.81
4142 4930 2.024941 AGAGGATTTTGGCTTGTAGGGG 60.025 50.000 0.00 0.00 0.00 4.79
4143 4931 3.282885 GAGAGGATTTTGGCTTGTAGGG 58.717 50.000 0.00 0.00 0.00 3.53
4144 4932 3.282885 GGAGAGGATTTTGGCTTGTAGG 58.717 50.000 0.00 0.00 0.00 3.18
4145 4933 3.955471 TGGAGAGGATTTTGGCTTGTAG 58.045 45.455 0.00 0.00 0.00 2.74
4146 4934 4.380843 TTGGAGAGGATTTTGGCTTGTA 57.619 40.909 0.00 0.00 0.00 2.41
4147 4935 2.978156 TGGAGAGGATTTTGGCTTGT 57.022 45.000 0.00 0.00 0.00 3.16
4148 4936 3.131755 GGATTGGAGAGGATTTTGGCTTG 59.868 47.826 0.00 0.00 0.00 4.01
4149 4937 3.245730 TGGATTGGAGAGGATTTTGGCTT 60.246 43.478 0.00 0.00 0.00 4.35
4150 4938 2.312741 TGGATTGGAGAGGATTTTGGCT 59.687 45.455 0.00 0.00 0.00 4.75
4151 4939 2.428530 GTGGATTGGAGAGGATTTTGGC 59.571 50.000 0.00 0.00 0.00 4.52
4152 4940 3.950395 GAGTGGATTGGAGAGGATTTTGG 59.050 47.826 0.00 0.00 0.00 3.28
4153 4941 3.950395 GGAGTGGATTGGAGAGGATTTTG 59.050 47.826 0.00 0.00 0.00 2.44
4154 4942 3.593328 TGGAGTGGATTGGAGAGGATTTT 59.407 43.478 0.00 0.00 0.00 1.82
4155 4943 3.192944 TGGAGTGGATTGGAGAGGATTT 58.807 45.455 0.00 0.00 0.00 2.17
4156 4944 2.850833 TGGAGTGGATTGGAGAGGATT 58.149 47.619 0.00 0.00 0.00 3.01
4157 4945 2.575921 TGGAGTGGATTGGAGAGGAT 57.424 50.000 0.00 0.00 0.00 3.24
4158 4946 2.342406 TTGGAGTGGATTGGAGAGGA 57.658 50.000 0.00 0.00 0.00 3.71
4159 4947 2.158696 GGATTGGAGTGGATTGGAGAGG 60.159 54.545 0.00 0.00 0.00 3.69
4160 4948 2.158696 GGGATTGGAGTGGATTGGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
4161 4949 1.846439 GGGATTGGAGTGGATTGGAGA 59.154 52.381 0.00 0.00 0.00 3.71
4162 4950 1.133668 GGGGATTGGAGTGGATTGGAG 60.134 57.143 0.00 0.00 0.00 3.86
4163 4951 0.926293 GGGGATTGGAGTGGATTGGA 59.074 55.000 0.00 0.00 0.00 3.53
4164 4952 0.929244 AGGGGATTGGAGTGGATTGG 59.071 55.000 0.00 0.00 0.00 3.16
4165 4953 2.381911 CAAGGGGATTGGAGTGGATTG 58.618 52.381 0.00 0.00 35.08 2.67
4166 4954 2.834638 CAAGGGGATTGGAGTGGATT 57.165 50.000 0.00 0.00 35.08 3.01
4179 4967 1.907240 TTAATCCTCCTCCCAAGGGG 58.093 55.000 5.08 0.00 43.63 4.79
4180 4968 2.421529 CGTTTAATCCTCCTCCCAAGGG 60.422 54.545 0.00 0.00 43.56 3.95
4181 4969 2.504175 TCGTTTAATCCTCCTCCCAAGG 59.496 50.000 0.00 0.00 44.89 3.61
4182 4970 3.906720 TCGTTTAATCCTCCTCCCAAG 57.093 47.619 0.00 0.00 0.00 3.61
4183 4971 3.328343 TGTTCGTTTAATCCTCCTCCCAA 59.672 43.478 0.00 0.00 0.00 4.12
4184 4972 2.907696 TGTTCGTTTAATCCTCCTCCCA 59.092 45.455 0.00 0.00 0.00 4.37
4185 4973 3.622166 TGTTCGTTTAATCCTCCTCCC 57.378 47.619 0.00 0.00 0.00 4.30
4186 4974 3.939592 CCTTGTTCGTTTAATCCTCCTCC 59.060 47.826 0.00 0.00 0.00 4.30
4187 4975 3.374367 GCCTTGTTCGTTTAATCCTCCTC 59.626 47.826 0.00 0.00 0.00 3.71
4188 4976 3.344515 GCCTTGTTCGTTTAATCCTCCT 58.655 45.455 0.00 0.00 0.00 3.69
4189 4977 2.422479 GGCCTTGTTCGTTTAATCCTCC 59.578 50.000 0.00 0.00 0.00 4.30
4190 4978 3.127030 CAGGCCTTGTTCGTTTAATCCTC 59.873 47.826 0.00 0.00 0.00 3.71
4191 4979 3.081804 CAGGCCTTGTTCGTTTAATCCT 58.918 45.455 0.00 0.00 0.00 3.24
4192 4980 3.078837 TCAGGCCTTGTTCGTTTAATCC 58.921 45.455 0.00 0.00 0.00 3.01
4193 4981 3.426292 GCTCAGGCCTTGTTCGTTTAATC 60.426 47.826 0.00 0.00 0.00 1.75
4194 4982 2.488153 GCTCAGGCCTTGTTCGTTTAAT 59.512 45.455 0.00 0.00 0.00 1.40
4195 4983 1.877443 GCTCAGGCCTTGTTCGTTTAA 59.123 47.619 0.00 0.00 0.00 1.52
4196 4984 1.519408 GCTCAGGCCTTGTTCGTTTA 58.481 50.000 0.00 0.00 0.00 2.01
4197 4985 1.507141 CGCTCAGGCCTTGTTCGTTT 61.507 55.000 0.00 0.00 34.44 3.60
4198 4986 1.961277 CGCTCAGGCCTTGTTCGTT 60.961 57.895 0.00 0.00 34.44 3.85
4199 4987 2.357517 CGCTCAGGCCTTGTTCGT 60.358 61.111 0.00 0.00 34.44 3.85
4200 4988 2.048222 TCGCTCAGGCCTTGTTCG 60.048 61.111 0.00 4.65 34.44 3.95
4201 4989 0.603975 AACTCGCTCAGGCCTTGTTC 60.604 55.000 0.00 0.00 34.44 3.18
4202 4990 0.179018 AAACTCGCTCAGGCCTTGTT 60.179 50.000 0.00 0.00 34.44 2.83
4203 4991 0.179018 AAAACTCGCTCAGGCCTTGT 60.179 50.000 0.00 0.00 34.44 3.16
4204 4992 1.808411 TAAAACTCGCTCAGGCCTTG 58.192 50.000 0.00 0.00 34.44 3.61
4205 4993 2.027192 TCATAAAACTCGCTCAGGCCTT 60.027 45.455 0.00 0.00 34.44 4.35
4206 4994 1.555075 TCATAAAACTCGCTCAGGCCT 59.445 47.619 0.00 0.00 34.44 5.19
4207 4995 1.666189 GTCATAAAACTCGCTCAGGCC 59.334 52.381 0.00 0.00 34.44 5.19
4208 4996 2.622436 AGTCATAAAACTCGCTCAGGC 58.378 47.619 0.00 0.00 0.00 4.85
4209 4997 5.613358 AAAAGTCATAAAACTCGCTCAGG 57.387 39.130 0.00 0.00 0.00 3.86
4210 4998 7.117241 TGTAAAAGTCATAAAACTCGCTCAG 57.883 36.000 0.00 0.00 0.00 3.35
4272 5060 1.073125 TCATTCGACCTGCTTTTCCCA 59.927 47.619 0.00 0.00 0.00 4.37
4285 5073 5.617529 GCATTTTGTCATCTGTGTCATTCGA 60.618 40.000 0.00 0.00 0.00 3.71
4286 5074 4.556135 GCATTTTGTCATCTGTGTCATTCG 59.444 41.667 0.00 0.00 0.00 3.34
4292 5080 3.006003 TGCATGCATTTTGTCATCTGTGT 59.994 39.130 18.46 0.00 0.00 3.72
4335 5123 4.908601 ATACTTGTTGACATCCTCACCA 57.091 40.909 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.