Multiple sequence alignment - TraesCS7A01G385700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G385700 chr7A 100.000 2579 0 0 1 2579 561701858 561704436 0.000000e+00 4763
1 TraesCS7A01G385700 chr7A 86.029 544 69 4 156 694 305530272 305530813 6.190000e-161 577
2 TraesCS7A01G385700 chr7A 85.688 545 74 3 154 695 269096284 269096827 2.880000e-159 571
3 TraesCS7A01G385700 chr7A 85.688 545 72 4 154 695 496821080 496821621 1.040000e-158 569
4 TraesCS7A01G385700 chr7A 76.866 402 56 19 1 368 709417368 709417766 2.620000e-45 193
5 TraesCS7A01G385700 chr7A 80.000 175 35 0 525 699 644038495 644038321 2.080000e-26 130
6 TraesCS7A01G385700 chr7B 94.035 1710 79 11 795 2494 524515641 524517337 0.000000e+00 2571
7 TraesCS7A01G385700 chr7B 76.884 398 57 17 4 368 692827087 692827482 2.620000e-45 193
8 TraesCS7A01G385700 chr7B 76.559 401 59 18 1 368 226424104 226424502 1.220000e-43 187
9 TraesCS7A01G385700 chr7D 92.776 1758 82 17 795 2519 496094371 496096116 0.000000e+00 2501
10 TraesCS7A01G385700 chr2A 84.294 694 90 7 6 695 760426817 760426139 0.000000e+00 660
11 TraesCS7A01G385700 chr2A 75.735 272 48 12 7 271 685754671 685754411 1.250000e-23 121
12 TraesCS7A01G385700 chr1A 85.748 428 48 6 273 695 570116544 570116125 8.470000e-120 440
13 TraesCS7A01G385700 chr1A 83.617 470 65 7 232 697 254989109 254988648 5.100000e-117 431
14 TraesCS7A01G385700 chr1A 85.926 135 17 2 1 135 32854724 32854592 2.680000e-30 143
15 TraesCS7A01G385700 chr3A 79.365 504 51 27 1 470 705255658 705255174 3.220000e-79 305
16 TraesCS7A01G385700 chr3A 77.273 396 54 17 7 368 617439324 617439717 1.570000e-47 200
17 TraesCS7A01G385700 chr3B 77.556 401 55 20 1 368 77702620 77703018 2.600000e-50 209
18 TraesCS7A01G385700 chr5A 76.309 401 60 17 1 368 33170580 33170978 5.670000e-42 182
19 TraesCS7A01G385700 chr5B 77.301 326 57 11 382 695 375425315 375424995 2.640000e-40 176
20 TraesCS7A01G385700 chr6A 76.825 315 54 17 393 696 184738037 184738343 2.660000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G385700 chr7A 561701858 561704436 2578 False 4763 4763 100.000 1 2579 1 chr7A.!!$F4 2578
1 TraesCS7A01G385700 chr7A 305530272 305530813 541 False 577 577 86.029 156 694 1 chr7A.!!$F2 538
2 TraesCS7A01G385700 chr7A 269096284 269096827 543 False 571 571 85.688 154 695 1 chr7A.!!$F1 541
3 TraesCS7A01G385700 chr7A 496821080 496821621 541 False 569 569 85.688 154 695 1 chr7A.!!$F3 541
4 TraesCS7A01G385700 chr7B 524515641 524517337 1696 False 2571 2571 94.035 795 2494 1 chr7B.!!$F2 1699
5 TraesCS7A01G385700 chr7D 496094371 496096116 1745 False 2501 2501 92.776 795 2519 1 chr7D.!!$F1 1724
6 TraesCS7A01G385700 chr2A 760426139 760426817 678 True 660 660 84.294 6 695 1 chr2A.!!$R2 689


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.253044 TGCAGAGCCCAGAATACCAC 59.747 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 1619 0.106066 TCCCTTATCTTACCCGCCGA 60.106 55.0 0.0 0.0 0.0 5.54 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.634815 ATTAGTCATGCAGAGCCCAG 57.365 50.000 0.00 0.00 0.00 4.45
30 31 2.121948 AGTCATGCAGAGCCCAGAATA 58.878 47.619 0.00 0.00 0.00 1.75
33 34 1.134007 CATGCAGAGCCCAGAATACCA 60.134 52.381 0.00 0.00 0.00 3.25
34 35 0.253044 TGCAGAGCCCAGAATACCAC 59.747 55.000 0.00 0.00 0.00 4.16
83 85 9.904198 TGATTGATTTGTGATAGACCTTTGATA 57.096 29.630 0.00 0.00 0.00 2.15
112 114 1.475682 GGTGTACGTAGGGAGAACTGG 59.524 57.143 0.00 0.00 0.00 4.00
135 137 3.706373 GTCCTCGAAGGCCCAGCA 61.706 66.667 0.00 0.00 34.61 4.41
136 138 2.927856 TCCTCGAAGGCCCAGCAA 60.928 61.111 0.00 0.00 34.61 3.91
142 144 0.962356 CGAAGGCCCAGCAAGACAAT 60.962 55.000 0.00 0.00 0.00 2.71
143 145 0.529378 GAAGGCCCAGCAAGACAATG 59.471 55.000 0.00 0.00 0.00 2.82
151 153 0.403271 AGCAAGACAATGGCACCTCT 59.597 50.000 0.00 0.00 0.00 3.69
152 154 1.630369 AGCAAGACAATGGCACCTCTA 59.370 47.619 0.00 0.00 0.00 2.43
162 164 2.261671 CACCTCTAGCGCCACGTT 59.738 61.111 2.29 0.00 0.00 3.99
167 169 2.579787 CTAGCGCCACGTTCGAGG 60.580 66.667 2.29 4.45 0.00 4.63
306 309 1.202627 GCTCTGGATGTGGATGGAGTC 60.203 57.143 0.00 0.00 0.00 3.36
307 310 2.396608 CTCTGGATGTGGATGGAGTCT 58.603 52.381 0.00 0.00 0.00 3.24
319 322 0.965866 TGGAGTCTTCGCACTCGGAT 60.966 55.000 0.00 0.00 43.43 4.18
320 323 1.022735 GGAGTCTTCGCACTCGGATA 58.977 55.000 0.00 0.00 43.43 2.59
334 337 1.522569 GGATACAAGAGCGCCCTGT 59.477 57.895 2.29 7.90 0.00 4.00
355 358 0.820226 CTCCAGGCAGAAGACGATGA 59.180 55.000 0.00 0.00 0.00 2.92
356 359 1.411977 CTCCAGGCAGAAGACGATGAT 59.588 52.381 0.00 0.00 0.00 2.45
357 360 2.625314 CTCCAGGCAGAAGACGATGATA 59.375 50.000 0.00 0.00 0.00 2.15
367 370 2.798680 AGACGATGATAGCGACAACAC 58.201 47.619 0.00 0.00 0.00 3.32
383 386 6.183360 GCGACAACACTACATATAATATGCCC 60.183 42.308 0.00 0.00 0.00 5.36
429 432 4.019411 TGGATGCACCTCTGATTAGTTTCA 60.019 41.667 0.00 0.00 39.86 2.69
473 478 4.530094 TTGTTTCCTAATAGAATGCGCG 57.470 40.909 0.00 0.00 0.00 6.86
485 491 4.928661 AGAATGCGCGGTGATTATATTC 57.071 40.909 8.83 2.93 0.00 1.75
494 500 6.755141 GCGCGGTGATTATATTCTCCTAATTA 59.245 38.462 8.83 0.00 0.00 1.40
505 511 0.903942 TCCTAATTAACCGGGCGTGT 59.096 50.000 6.32 0.00 0.00 4.49
506 512 1.278699 TCCTAATTAACCGGGCGTGTT 59.721 47.619 6.32 0.00 0.00 3.32
522 528 3.435327 GCGTGTTATTTCATCTGTGGTGA 59.565 43.478 0.00 0.00 0.00 4.02
523 529 4.094887 GCGTGTTATTTCATCTGTGGTGAT 59.905 41.667 0.00 0.00 0.00 3.06
531 537 4.842531 TCATCTGTGGTGATGTATGGTT 57.157 40.909 0.00 0.00 43.03 3.67
533 539 6.499106 TCATCTGTGGTGATGTATGGTTAT 57.501 37.500 0.00 0.00 43.03 1.89
581 587 8.903820 ACACATAAAATGAGTTAGATTAAGGCC 58.096 33.333 0.00 0.00 29.63 5.19
582 588 8.070171 CACATAAAATGAGTTAGATTAAGGCCG 58.930 37.037 0.00 0.00 0.00 6.13
584 590 4.772886 AATGAGTTAGATTAAGGCCGGT 57.227 40.909 1.90 0.00 0.00 5.28
586 592 3.101437 TGAGTTAGATTAAGGCCGGTCA 58.899 45.455 9.71 0.00 0.00 4.02
629 635 0.823356 ATCATGCGGTGGTAATGGGC 60.823 55.000 0.00 0.00 0.00 5.36
646 652 1.406180 GGGCCTGTGTTTGTTTTACGT 59.594 47.619 0.84 0.00 0.00 3.57
648 654 2.097791 GGCCTGTGTTTGTTTTACGTGA 59.902 45.455 0.00 0.00 0.00 4.35
650 656 4.023878 GGCCTGTGTTTGTTTTACGTGATA 60.024 41.667 0.00 0.00 0.00 2.15
651 657 5.335348 GGCCTGTGTTTGTTTTACGTGATAT 60.335 40.000 0.00 0.00 0.00 1.63
657 663 9.999009 TGTGTTTGTTTTACGTGATATGTTTAA 57.001 25.926 0.00 0.00 0.00 1.52
709 715 9.927668 AGTAGTAGAGATTCGTCTAGTATTACC 57.072 37.037 9.19 0.00 37.31 2.85
710 716 7.887996 AGTAGAGATTCGTCTAGTATTACCG 57.112 40.000 0.00 0.00 31.94 4.02
711 717 7.441017 AGTAGAGATTCGTCTAGTATTACCGT 58.559 38.462 0.00 0.00 31.94 4.83
712 718 8.580720 AGTAGAGATTCGTCTAGTATTACCGTA 58.419 37.037 0.00 0.00 31.94 4.02
713 719 7.887996 AGAGATTCGTCTAGTATTACCGTAG 57.112 40.000 0.00 0.00 0.00 3.51
714 720 7.665690 AGAGATTCGTCTAGTATTACCGTAGA 58.334 38.462 0.00 0.00 0.00 2.59
715 721 7.598493 AGAGATTCGTCTAGTATTACCGTAGAC 59.402 40.741 10.88 10.88 39.46 2.59
716 722 6.648725 AGATTCGTCTAGTATTACCGTAGACC 59.351 42.308 13.51 4.61 39.62 3.85
717 723 5.537300 TCGTCTAGTATTACCGTAGACCT 57.463 43.478 13.51 0.00 39.62 3.85
718 724 6.650427 TCGTCTAGTATTACCGTAGACCTA 57.350 41.667 13.51 4.50 39.62 3.08
719 725 7.050970 TCGTCTAGTATTACCGTAGACCTAA 57.949 40.000 13.51 2.86 39.62 2.69
720 726 7.671302 TCGTCTAGTATTACCGTAGACCTAAT 58.329 38.462 13.51 0.00 39.62 1.73
721 727 8.150945 TCGTCTAGTATTACCGTAGACCTAATT 58.849 37.037 13.51 0.00 39.62 1.40
722 728 8.778358 CGTCTAGTATTACCGTAGACCTAATTT 58.222 37.037 13.51 0.00 39.62 1.82
758 764 9.871238 GAATAGTAGAGTTAAATGGACAGTTCA 57.129 33.333 0.00 0.00 0.00 3.18
759 765 9.877178 AATAGTAGAGTTAAATGGACAGTTCAG 57.123 33.333 0.00 0.00 0.00 3.02
760 766 6.166982 AGTAGAGTTAAATGGACAGTTCAGC 58.833 40.000 0.00 0.00 0.00 4.26
761 767 4.327680 AGAGTTAAATGGACAGTTCAGCC 58.672 43.478 0.00 0.00 0.00 4.85
762 768 4.042187 AGAGTTAAATGGACAGTTCAGCCT 59.958 41.667 0.00 0.00 0.00 4.58
763 769 4.729868 AGTTAAATGGACAGTTCAGCCTT 58.270 39.130 0.00 0.00 0.00 4.35
764 770 5.140454 AGTTAAATGGACAGTTCAGCCTTT 58.860 37.500 0.00 0.00 0.00 3.11
765 771 5.598417 AGTTAAATGGACAGTTCAGCCTTTT 59.402 36.000 0.00 0.00 34.61 2.27
766 772 4.590850 AAATGGACAGTTCAGCCTTTTC 57.409 40.909 0.00 0.00 0.00 2.29
767 773 2.727123 TGGACAGTTCAGCCTTTTCA 57.273 45.000 0.00 0.00 0.00 2.69
768 774 3.011566 TGGACAGTTCAGCCTTTTCAA 57.988 42.857 0.00 0.00 0.00 2.69
769 775 2.687935 TGGACAGTTCAGCCTTTTCAAC 59.312 45.455 0.00 0.00 0.00 3.18
770 776 2.952310 GGACAGTTCAGCCTTTTCAACT 59.048 45.455 0.00 0.00 0.00 3.16
771 777 3.003793 GGACAGTTCAGCCTTTTCAACTC 59.996 47.826 0.00 0.00 0.00 3.01
772 778 3.879892 GACAGTTCAGCCTTTTCAACTCT 59.120 43.478 0.00 0.00 0.00 3.24
773 779 5.036117 ACAGTTCAGCCTTTTCAACTCTA 57.964 39.130 0.00 0.00 0.00 2.43
774 780 4.816925 ACAGTTCAGCCTTTTCAACTCTAC 59.183 41.667 0.00 0.00 0.00 2.59
775 781 4.816385 CAGTTCAGCCTTTTCAACTCTACA 59.184 41.667 0.00 0.00 0.00 2.74
776 782 5.049818 CAGTTCAGCCTTTTCAACTCTACAG 60.050 44.000 0.00 0.00 0.00 2.74
777 783 4.955811 TCAGCCTTTTCAACTCTACAGA 57.044 40.909 0.00 0.00 0.00 3.41
778 784 5.290493 TCAGCCTTTTCAACTCTACAGAA 57.710 39.130 0.00 0.00 0.00 3.02
779 785 5.869579 TCAGCCTTTTCAACTCTACAGAAT 58.130 37.500 0.00 0.00 0.00 2.40
780 786 6.299141 TCAGCCTTTTCAACTCTACAGAATT 58.701 36.000 0.00 0.00 0.00 2.17
781 787 6.772716 TCAGCCTTTTCAACTCTACAGAATTT 59.227 34.615 0.00 0.00 0.00 1.82
782 788 7.041098 TCAGCCTTTTCAACTCTACAGAATTTC 60.041 37.037 0.00 0.00 0.00 2.17
783 789 7.001073 AGCCTTTTCAACTCTACAGAATTTCT 58.999 34.615 0.00 0.00 0.00 2.52
784 790 8.157476 AGCCTTTTCAACTCTACAGAATTTCTA 58.843 33.333 0.00 0.00 0.00 2.10
785 791 8.231161 GCCTTTTCAACTCTACAGAATTTCTAC 58.769 37.037 0.00 0.00 0.00 2.59
786 792 8.436200 CCTTTTCAACTCTACAGAATTTCTACG 58.564 37.037 0.00 0.00 0.00 3.51
787 793 8.882415 TTTTCAACTCTACAGAATTTCTACGT 57.118 30.769 0.00 0.00 0.00 3.57
788 794 9.970395 TTTTCAACTCTACAGAATTTCTACGTA 57.030 29.630 0.00 0.00 0.00 3.57
789 795 9.970395 TTTCAACTCTACAGAATTTCTACGTAA 57.030 29.630 0.00 0.00 0.00 3.18
790 796 9.970395 TTCAACTCTACAGAATTTCTACGTAAA 57.030 29.630 0.00 0.00 0.00 2.01
791 797 9.970395 TCAACTCTACAGAATTTCTACGTAAAA 57.030 29.630 0.00 1.35 0.00 1.52
923 929 2.437359 GCGCAGTTGATCAGCCCT 60.437 61.111 0.30 0.00 0.00 5.19
1025 1031 3.368501 CCTCCTCCTCCCCTCCCA 61.369 72.222 0.00 0.00 0.00 4.37
1076 1082 3.851128 GCCCCTACTCCTCCACGC 61.851 72.222 0.00 0.00 0.00 5.34
1428 1434 2.757099 TACGTCGGGGAGAAGGGC 60.757 66.667 0.00 0.00 32.45 5.19
1613 1619 5.841237 TGCCTAGGTTTCTTGATAGATAGCT 59.159 40.000 11.31 0.00 41.20 3.32
1639 1645 3.323775 GGGTAAGATAAGGGATGGGTGA 58.676 50.000 0.00 0.00 0.00 4.02
1654 1660 2.357075 GGGTGACCGGAAAAGAAGATC 58.643 52.381 9.46 0.00 43.64 2.75
1659 1665 2.866762 GACCGGAAAAGAAGATCGATGG 59.133 50.000 9.46 0.00 0.00 3.51
1741 1753 9.533253 TTATCGTAGATGGATGCATGTATATTG 57.467 33.333 2.46 0.00 45.12 1.90
1742 1754 6.935167 TCGTAGATGGATGCATGTATATTGT 58.065 36.000 2.46 0.00 0.00 2.71
1743 1755 8.062065 TCGTAGATGGATGCATGTATATTGTA 57.938 34.615 2.46 0.00 0.00 2.41
1744 1756 8.695456 TCGTAGATGGATGCATGTATATTGTAT 58.305 33.333 2.46 0.00 0.00 2.29
1786 1798 6.433093 GGAGCTAAAGTTTTCACCCTGAATTA 59.567 38.462 0.00 0.00 36.11 1.40
1806 1818 8.132362 TGAATTACTGAACAATTTACACACCAC 58.868 33.333 0.00 0.00 0.00 4.16
1827 1839 3.744426 ACGGAACTCTGTTTCGTTAATGG 59.256 43.478 10.53 0.00 29.59 3.16
1920 1938 6.713903 AGTTGAAGATCATGATGTCAACAACT 59.286 34.615 35.56 31.39 38.58 3.16
1922 1940 5.999600 TGAAGATCATGATGTCAACAACTGT 59.000 36.000 14.30 0.00 0.00 3.55
2026 2070 1.564818 ACGGTGATCTCCCTACTGAGA 59.435 52.381 8.22 0.00 45.01 3.27
2028 2072 3.024547 CGGTGATCTCCCTACTGAGAAA 58.975 50.000 8.22 0.00 44.16 2.52
2039 2083 5.721480 TCCCTACTGAGAAATGACTGATCAA 59.279 40.000 0.00 0.00 38.69 2.57
2089 2133 3.305813 GGACCACGAGTTGATCTACACAA 60.306 47.826 9.96 0.00 0.00 3.33
2164 2208 3.112709 GACAAGGACTGCGCGACC 61.113 66.667 12.10 7.16 0.00 4.79
2182 2226 2.766400 CGAGGACGTGGAGAGGAGC 61.766 68.421 0.00 0.00 34.56 4.70
2498 2542 3.489059 CCATTGCCAAACATACATCGGTC 60.489 47.826 0.00 0.00 0.00 4.79
2504 2548 3.546020 CCAAACATACATCGGTCGCATTC 60.546 47.826 0.00 0.00 0.00 2.67
2510 2554 1.227380 ATCGGTCGCATTCTCAGGC 60.227 57.895 0.00 0.00 0.00 4.85
2519 2563 2.641305 GCATTCTCAGGCTCTGACAAT 58.359 47.619 1.25 1.47 35.39 2.71
2520 2564 2.613133 GCATTCTCAGGCTCTGACAATC 59.387 50.000 1.25 0.00 35.39 2.67
2521 2565 3.682155 GCATTCTCAGGCTCTGACAATCT 60.682 47.826 1.25 0.00 35.39 2.40
2522 2566 3.606595 TTCTCAGGCTCTGACAATCTG 57.393 47.619 1.25 0.00 35.39 2.90
2523 2567 2.812658 TCTCAGGCTCTGACAATCTGA 58.187 47.619 1.25 0.00 35.39 3.27
2524 2568 2.495270 TCTCAGGCTCTGACAATCTGAC 59.505 50.000 1.25 0.00 35.39 3.51
2525 2569 2.496871 CTCAGGCTCTGACAATCTGACT 59.503 50.000 1.25 0.00 35.39 3.41
2526 2570 2.233186 TCAGGCTCTGACAATCTGACTG 59.767 50.000 1.25 0.00 35.39 3.51
2527 2571 2.233186 CAGGCTCTGACAATCTGACTGA 59.767 50.000 0.00 0.00 32.44 3.41
2528 2572 2.902486 AGGCTCTGACAATCTGACTGAA 59.098 45.455 0.00 0.00 0.00 3.02
2529 2573 3.055963 AGGCTCTGACAATCTGACTGAAG 60.056 47.826 0.00 0.00 0.00 3.02
2530 2574 3.056250 GGCTCTGACAATCTGACTGAAGA 60.056 47.826 0.00 0.00 0.00 2.87
2531 2575 4.562347 GGCTCTGACAATCTGACTGAAGAA 60.562 45.833 0.00 0.00 0.00 2.52
2532 2576 4.993584 GCTCTGACAATCTGACTGAAGAAA 59.006 41.667 0.00 0.00 0.00 2.52
2533 2577 5.642919 GCTCTGACAATCTGACTGAAGAAAT 59.357 40.000 0.00 0.00 0.00 2.17
2534 2578 6.815641 GCTCTGACAATCTGACTGAAGAAATA 59.184 38.462 0.00 0.00 0.00 1.40
2535 2579 7.201513 GCTCTGACAATCTGACTGAAGAAATAC 60.202 40.741 0.00 0.00 0.00 1.89
2536 2580 7.901029 TCTGACAATCTGACTGAAGAAATACT 58.099 34.615 0.00 0.00 0.00 2.12
2537 2581 8.031864 TCTGACAATCTGACTGAAGAAATACTC 58.968 37.037 0.00 0.00 0.00 2.59
2538 2582 7.901029 TGACAATCTGACTGAAGAAATACTCT 58.099 34.615 0.00 0.00 35.13 3.24
2539 2583 7.816513 TGACAATCTGACTGAAGAAATACTCTG 59.183 37.037 0.00 0.00 33.37 3.35
2540 2584 7.102346 ACAATCTGACTGAAGAAATACTCTGG 58.898 38.462 0.00 0.00 33.37 3.86
2541 2585 7.038729 ACAATCTGACTGAAGAAATACTCTGGA 60.039 37.037 0.00 0.00 33.37 3.86
2542 2586 6.918067 TCTGACTGAAGAAATACTCTGGAA 57.082 37.500 0.00 0.00 33.37 3.53
2543 2587 7.303182 TCTGACTGAAGAAATACTCTGGAAA 57.697 36.000 0.00 0.00 33.37 3.13
2544 2588 7.382110 TCTGACTGAAGAAATACTCTGGAAAG 58.618 38.462 0.00 0.00 33.37 2.62
2545 2589 7.015682 TCTGACTGAAGAAATACTCTGGAAAGT 59.984 37.037 0.00 0.00 33.37 2.66
2546 2590 6.931281 TGACTGAAGAAATACTCTGGAAAGTG 59.069 38.462 0.00 0.00 33.37 3.16
2547 2591 5.703130 ACTGAAGAAATACTCTGGAAAGTGC 59.297 40.000 0.00 0.00 33.37 4.40
2548 2592 5.620206 TGAAGAAATACTCTGGAAAGTGCA 58.380 37.500 0.00 0.00 33.37 4.57
2549 2593 5.470098 TGAAGAAATACTCTGGAAAGTGCAC 59.530 40.000 9.40 9.40 33.37 4.57
2550 2594 5.234466 AGAAATACTCTGGAAAGTGCACT 57.766 39.130 15.25 15.25 31.12 4.40
2551 2595 4.999950 AGAAATACTCTGGAAAGTGCACTG 59.000 41.667 22.49 7.53 31.12 3.66
2552 2596 4.623932 AATACTCTGGAAAGTGCACTGA 57.376 40.909 22.49 11.91 0.00 3.41
2553 2597 2.246719 ACTCTGGAAAGTGCACTGAC 57.753 50.000 22.49 16.81 0.00 3.51
2554 2598 1.486310 ACTCTGGAAAGTGCACTGACA 59.514 47.619 22.49 17.87 0.00 3.58
2555 2599 2.105477 ACTCTGGAAAGTGCACTGACAT 59.895 45.455 22.49 7.30 0.00 3.06
2556 2600 3.324846 ACTCTGGAAAGTGCACTGACATA 59.675 43.478 22.49 11.21 0.00 2.29
2557 2601 3.930336 TCTGGAAAGTGCACTGACATAG 58.070 45.455 22.49 17.22 0.00 2.23
2558 2602 2.417933 CTGGAAAGTGCACTGACATAGC 59.582 50.000 22.49 4.81 0.00 2.97
2559 2603 1.740025 GGAAAGTGCACTGACATAGCC 59.260 52.381 22.49 10.23 0.00 3.93
2560 2604 2.426522 GAAAGTGCACTGACATAGCCA 58.573 47.619 22.49 0.00 0.00 4.75
2561 2605 2.795231 AAGTGCACTGACATAGCCAT 57.205 45.000 22.49 0.00 0.00 4.40
2562 2606 2.795231 AGTGCACTGACATAGCCATT 57.205 45.000 20.97 0.00 0.00 3.16
2563 2607 3.077484 AGTGCACTGACATAGCCATTT 57.923 42.857 20.97 0.00 0.00 2.32
2564 2608 3.012518 AGTGCACTGACATAGCCATTTC 58.987 45.455 20.97 0.00 0.00 2.17
2565 2609 3.012518 GTGCACTGACATAGCCATTTCT 58.987 45.455 10.32 0.00 0.00 2.52
2566 2610 3.064545 GTGCACTGACATAGCCATTTCTC 59.935 47.826 10.32 0.00 0.00 2.87
2567 2611 3.054875 TGCACTGACATAGCCATTTCTCT 60.055 43.478 0.00 0.00 0.00 3.10
2568 2612 3.311871 GCACTGACATAGCCATTTCTCTG 59.688 47.826 0.00 0.00 0.00 3.35
2569 2613 4.763073 CACTGACATAGCCATTTCTCTGA 58.237 43.478 0.00 0.00 0.00 3.27
2570 2614 5.181009 CACTGACATAGCCATTTCTCTGAA 58.819 41.667 0.00 0.00 0.00 3.02
2571 2615 5.064452 CACTGACATAGCCATTTCTCTGAAC 59.936 44.000 0.00 0.00 0.00 3.18
2572 2616 4.183865 TGACATAGCCATTTCTCTGAACG 58.816 43.478 0.00 0.00 0.00 3.95
2573 2617 4.081697 TGACATAGCCATTTCTCTGAACGA 60.082 41.667 0.00 0.00 0.00 3.85
2574 2618 5.028549 ACATAGCCATTTCTCTGAACGAT 57.971 39.130 0.00 0.00 0.00 3.73
2575 2619 5.431765 ACATAGCCATTTCTCTGAACGATT 58.568 37.500 0.00 0.00 0.00 3.34
2576 2620 5.882557 ACATAGCCATTTCTCTGAACGATTT 59.117 36.000 0.00 0.00 0.00 2.17
2577 2621 4.954092 AGCCATTTCTCTGAACGATTTC 57.046 40.909 0.00 0.00 0.00 2.17
2578 2622 4.583871 AGCCATTTCTCTGAACGATTTCT 58.416 39.130 0.00 0.00 32.36 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.409826 GGGCTCTGCATGACTAATATTGTAC 59.590 44.000 0.00 0.00 0.00 2.90
1 2 5.071653 TGGGCTCTGCATGACTAATATTGTA 59.928 40.000 0.00 0.00 0.00 2.41
2 3 4.141413 TGGGCTCTGCATGACTAATATTGT 60.141 41.667 0.00 0.00 0.00 2.71
3 4 4.392047 TGGGCTCTGCATGACTAATATTG 58.608 43.478 0.00 0.00 0.00 1.90
4 5 4.349048 TCTGGGCTCTGCATGACTAATATT 59.651 41.667 0.00 0.00 0.00 1.28
16 17 0.464554 GGTGGTATTCTGGGCTCTGC 60.465 60.000 0.00 0.00 0.00 4.26
17 18 0.911769 TGGTGGTATTCTGGGCTCTG 59.088 55.000 0.00 0.00 0.00 3.35
19 20 2.507407 TTTGGTGGTATTCTGGGCTC 57.493 50.000 0.00 0.00 0.00 4.70
30 31 9.665719 GGTGAATATTTAATTTGATTTGGTGGT 57.334 29.630 0.00 0.00 0.00 4.16
65 67 5.163447 CGAGGGTATCAAAGGTCTATCACAA 60.163 44.000 0.00 0.00 0.00 3.33
67 69 4.583489 TCGAGGGTATCAAAGGTCTATCAC 59.417 45.833 0.00 0.00 0.00 3.06
104 106 3.701800 AGGACCTCCTCCAGTTCTC 57.298 57.895 0.00 0.00 44.77 2.87
126 128 1.304713 CCATTGTCTTGCTGGGCCT 60.305 57.895 4.53 0.00 0.00 5.19
135 137 1.406069 CGCTAGAGGTGCCATTGTCTT 60.406 52.381 0.00 0.00 0.00 3.01
136 138 0.176680 CGCTAGAGGTGCCATTGTCT 59.823 55.000 0.00 0.00 0.00 3.41
151 153 4.789075 GCCTCGAACGTGGCGCTA 62.789 66.667 20.91 0.00 43.44 4.26
174 176 2.687200 CCATCGTCCCCAGGGTGA 60.687 66.667 4.22 4.11 36.47 4.02
254 257 1.134694 GTGTCGGCTTCATTTCCGC 59.865 57.895 0.00 0.00 44.91 5.54
259 262 2.034879 CGGCAGTGTCGGCTTCATT 61.035 57.895 9.85 0.00 0.00 2.57
260 263 2.434884 CGGCAGTGTCGGCTTCAT 60.435 61.111 9.85 0.00 0.00 2.57
306 309 2.455032 CTCTTGTATCCGAGTGCGAAG 58.545 52.381 0.00 0.00 40.82 3.79
307 310 1.469251 GCTCTTGTATCCGAGTGCGAA 60.469 52.381 0.00 0.00 40.82 4.70
319 322 1.605058 GAGGACAGGGCGCTCTTGTA 61.605 60.000 7.32 0.00 0.00 2.41
320 323 2.925170 AGGACAGGGCGCTCTTGT 60.925 61.111 7.32 9.96 0.00 3.16
334 337 0.324738 ATCGTCTTCTGCCTGGAGGA 60.325 55.000 0.00 0.00 37.39 3.71
355 358 9.302345 GCATATTATATGTAGTGTTGTCGCTAT 57.698 33.333 13.03 0.00 38.63 2.97
356 359 7.758076 GGCATATTATATGTAGTGTTGTCGCTA 59.242 37.037 13.03 0.00 35.84 4.26
357 360 6.590292 GGCATATTATATGTAGTGTTGTCGCT 59.410 38.462 13.03 0.00 38.10 4.93
367 370 9.817809 ACTAAATCACGGGCATATTATATGTAG 57.182 33.333 13.03 7.76 0.00 2.74
429 432 4.888038 TCACGCGCGTCCTATTATATAT 57.112 40.909 35.61 3.05 0.00 0.86
473 478 9.379791 CCGGTTAATTAGGAGAATATAATCACC 57.620 37.037 0.00 0.00 0.00 4.02
485 491 1.134610 ACACGCCCGGTTAATTAGGAG 60.135 52.381 0.00 0.00 0.00 3.69
494 500 1.741145 GATGAAATAACACGCCCGGTT 59.259 47.619 0.00 0.00 0.00 4.44
505 511 7.345691 ACCATACATCACCACAGATGAAATAA 58.654 34.615 10.59 0.00 46.51 1.40
506 512 6.899089 ACCATACATCACCACAGATGAAATA 58.101 36.000 10.59 0.00 46.51 1.40
560 566 6.655930 ACCGGCCTTAATCTAACTCATTTTA 58.344 36.000 0.00 0.00 0.00 1.52
581 587 5.523916 CCCACTAAACTCAATCTAATGACCG 59.476 44.000 0.00 0.00 0.00 4.79
582 588 5.297029 GCCCACTAAACTCAATCTAATGACC 59.703 44.000 0.00 0.00 0.00 4.02
584 590 5.191722 AGGCCCACTAAACTCAATCTAATGA 59.808 40.000 0.00 0.00 0.00 2.57
586 592 5.717119 AGGCCCACTAAACTCAATCTAAT 57.283 39.130 0.00 0.00 0.00 1.73
629 635 6.664515 ACATATCACGTAAAACAAACACAGG 58.335 36.000 0.00 0.00 0.00 4.00
695 701 5.537300 AGGTCTACGGTAATACTAGACGA 57.463 43.478 11.33 0.00 38.08 4.20
696 702 7.897575 ATTAGGTCTACGGTAATACTAGACG 57.102 40.000 11.33 1.00 38.08 4.18
732 738 9.871238 TGAACTGTCCATTTAACTCTACTATTC 57.129 33.333 0.00 0.00 0.00 1.75
733 739 9.877178 CTGAACTGTCCATTTAACTCTACTATT 57.123 33.333 0.00 0.00 0.00 1.73
734 740 7.982354 GCTGAACTGTCCATTTAACTCTACTAT 59.018 37.037 0.00 0.00 0.00 2.12
735 741 7.321153 GCTGAACTGTCCATTTAACTCTACTA 58.679 38.462 0.00 0.00 0.00 1.82
736 742 6.166982 GCTGAACTGTCCATTTAACTCTACT 58.833 40.000 0.00 0.00 0.00 2.57
737 743 5.351740 GGCTGAACTGTCCATTTAACTCTAC 59.648 44.000 0.00 0.00 0.00 2.59
738 744 5.248477 AGGCTGAACTGTCCATTTAACTCTA 59.752 40.000 0.00 0.00 0.00 2.43
739 745 4.042187 AGGCTGAACTGTCCATTTAACTCT 59.958 41.667 0.00 0.00 0.00 3.24
740 746 4.327680 AGGCTGAACTGTCCATTTAACTC 58.672 43.478 0.00 0.00 0.00 3.01
741 747 4.373156 AGGCTGAACTGTCCATTTAACT 57.627 40.909 0.00 0.00 0.00 2.24
742 748 5.453567 AAAGGCTGAACTGTCCATTTAAC 57.546 39.130 0.00 0.00 0.00 2.01
743 749 5.596361 TGAAAAGGCTGAACTGTCCATTTAA 59.404 36.000 0.00 0.00 0.00 1.52
744 750 5.136828 TGAAAAGGCTGAACTGTCCATTTA 58.863 37.500 0.00 0.00 0.00 1.40
745 751 3.960102 TGAAAAGGCTGAACTGTCCATTT 59.040 39.130 0.00 0.00 0.00 2.32
746 752 3.565307 TGAAAAGGCTGAACTGTCCATT 58.435 40.909 0.00 0.00 0.00 3.16
747 753 3.228188 TGAAAAGGCTGAACTGTCCAT 57.772 42.857 0.00 0.00 0.00 3.41
748 754 2.687935 GTTGAAAAGGCTGAACTGTCCA 59.312 45.455 0.00 0.00 0.00 4.02
749 755 2.952310 AGTTGAAAAGGCTGAACTGTCC 59.048 45.455 0.00 0.00 0.00 4.02
750 756 3.879892 AGAGTTGAAAAGGCTGAACTGTC 59.120 43.478 6.29 0.00 0.00 3.51
751 757 3.891049 AGAGTTGAAAAGGCTGAACTGT 58.109 40.909 6.29 1.03 0.00 3.55
752 758 4.816385 TGTAGAGTTGAAAAGGCTGAACTG 59.184 41.667 6.29 0.00 0.00 3.16
753 759 5.036117 TGTAGAGTTGAAAAGGCTGAACT 57.964 39.130 0.00 0.00 0.00 3.01
754 760 5.057149 TCTGTAGAGTTGAAAAGGCTGAAC 58.943 41.667 0.00 0.00 0.00 3.18
755 761 5.290493 TCTGTAGAGTTGAAAAGGCTGAA 57.710 39.130 0.00 0.00 0.00 3.02
756 762 4.955811 TCTGTAGAGTTGAAAAGGCTGA 57.044 40.909 0.00 0.00 0.00 4.26
757 763 6.566197 AATTCTGTAGAGTTGAAAAGGCTG 57.434 37.500 0.00 0.00 0.00 4.85
758 764 7.001073 AGAAATTCTGTAGAGTTGAAAAGGCT 58.999 34.615 0.00 0.00 0.00 4.58
759 765 7.208225 AGAAATTCTGTAGAGTTGAAAAGGC 57.792 36.000 0.00 0.00 0.00 4.35
760 766 8.436200 CGTAGAAATTCTGTAGAGTTGAAAAGG 58.564 37.037 5.64 0.00 0.00 3.11
761 767 8.979574 ACGTAGAAATTCTGTAGAGTTGAAAAG 58.020 33.333 5.64 0.00 0.00 2.27
762 768 8.882415 ACGTAGAAATTCTGTAGAGTTGAAAA 57.118 30.769 5.64 0.00 0.00 2.29
763 769 9.970395 TTACGTAGAAATTCTGTAGAGTTGAAA 57.030 29.630 5.64 0.00 0.00 2.69
764 770 9.970395 TTTACGTAGAAATTCTGTAGAGTTGAA 57.030 29.630 5.64 0.00 0.00 2.69
765 771 9.970395 TTTTACGTAGAAATTCTGTAGAGTTGA 57.030 29.630 5.64 0.00 0.00 3.18
768 774 9.754382 TGTTTTTACGTAGAAATTCTGTAGAGT 57.246 29.630 13.65 1.57 0.00 3.24
773 779 8.340443 GGAGTTGTTTTTACGTAGAAATTCTGT 58.660 33.333 13.65 0.00 0.00 3.41
774 780 8.339714 TGGAGTTGTTTTTACGTAGAAATTCTG 58.660 33.333 13.65 0.00 0.00 3.02
775 781 8.340443 GTGGAGTTGTTTTTACGTAGAAATTCT 58.660 33.333 13.65 11.75 0.00 2.40
776 782 8.124199 TGTGGAGTTGTTTTTACGTAGAAATTC 58.876 33.333 13.65 9.50 0.00 2.17
777 783 7.987649 TGTGGAGTTGTTTTTACGTAGAAATT 58.012 30.769 13.65 2.14 0.00 1.82
778 784 7.496591 TCTGTGGAGTTGTTTTTACGTAGAAAT 59.503 33.333 13.65 0.00 0.00 2.17
779 785 6.817641 TCTGTGGAGTTGTTTTTACGTAGAAA 59.182 34.615 7.16 7.16 0.00 2.52
780 786 6.339730 TCTGTGGAGTTGTTTTTACGTAGAA 58.660 36.000 0.00 0.00 0.00 2.10
781 787 5.904941 TCTGTGGAGTTGTTTTTACGTAGA 58.095 37.500 0.00 0.00 0.00 2.59
782 788 6.592798 TTCTGTGGAGTTGTTTTTACGTAG 57.407 37.500 0.00 0.00 0.00 3.51
783 789 7.556733 AATTCTGTGGAGTTGTTTTTACGTA 57.443 32.000 0.00 0.00 0.00 3.57
784 790 6.445357 AATTCTGTGGAGTTGTTTTTACGT 57.555 33.333 0.00 0.00 0.00 3.57
785 791 7.193595 AGAAATTCTGTGGAGTTGTTTTTACG 58.806 34.615 0.00 0.00 0.00 3.18
788 794 9.533253 CAATAGAAATTCTGTGGAGTTGTTTTT 57.467 29.630 5.64 0.00 0.00 1.94
789 795 8.143835 CCAATAGAAATTCTGTGGAGTTGTTTT 58.856 33.333 17.63 0.00 35.95 2.43
790 796 7.255942 CCCAATAGAAATTCTGTGGAGTTGTTT 60.256 37.037 21.85 0.00 35.95 2.83
791 797 6.209391 CCCAATAGAAATTCTGTGGAGTTGTT 59.791 38.462 21.85 0.00 35.95 2.83
792 798 5.711976 CCCAATAGAAATTCTGTGGAGTTGT 59.288 40.000 21.85 0.00 35.95 3.32
793 799 5.393461 GCCCAATAGAAATTCTGTGGAGTTG 60.393 44.000 21.85 10.93 35.95 3.16
829 835 8.989653 TGGAAACAAAAAGAAAAATTCTACGT 57.010 26.923 0.00 0.00 36.66 3.57
830 836 9.083080 ACTGGAAACAAAAAGAAAAATTCTACG 57.917 29.630 0.00 0.00 42.06 3.51
873 879 3.545703 GGTCCGATGGAGAATTCAATGT 58.454 45.455 8.44 0.00 29.39 2.71
881 887 1.377594 TCGACGGTCCGATGGAGAA 60.378 57.895 20.51 0.00 33.14 2.87
923 929 1.461461 GCTGGGGATACTAGGGGCA 60.461 63.158 0.00 0.00 0.00 5.36
1025 1031 1.938596 TGGAGGAGGAGAGGGAGCT 60.939 63.158 0.00 0.00 0.00 4.09
1579 1585 1.658686 AACCTAGGCACTCGCTCTCG 61.659 60.000 9.30 0.00 41.75 4.04
1613 1619 0.106066 TCCCTTATCTTACCCGCCGA 60.106 55.000 0.00 0.00 0.00 5.54
1639 1645 2.500098 TCCATCGATCTTCTTTTCCGGT 59.500 45.455 0.00 0.00 0.00 5.28
1654 1660 5.422666 TTGTAAGCAGCAATTATCCATCG 57.577 39.130 0.00 0.00 0.00 3.84
1659 1665 5.192327 AGCCATTGTAAGCAGCAATTATC 57.808 39.130 0.00 0.00 34.68 1.75
1710 1722 6.936335 ACATGCATCCATCTACGATAATTTCA 59.064 34.615 0.00 0.00 0.00 2.69
1738 1750 8.442660 TCCAAAAATTACCCAGGAAATACAAT 57.557 30.769 0.00 0.00 0.00 2.71
1740 1752 6.071051 GCTCCAAAAATTACCCAGGAAATACA 60.071 38.462 0.00 0.00 0.00 2.29
1741 1753 6.154534 AGCTCCAAAAATTACCCAGGAAATAC 59.845 38.462 0.00 0.00 0.00 1.89
1742 1754 6.260663 AGCTCCAAAAATTACCCAGGAAATA 58.739 36.000 0.00 0.00 0.00 1.40
1743 1755 5.093677 AGCTCCAAAAATTACCCAGGAAAT 58.906 37.500 0.00 0.00 0.00 2.17
1744 1756 4.488770 AGCTCCAAAAATTACCCAGGAAA 58.511 39.130 0.00 0.00 0.00 3.13
1746 1758 3.825908 AGCTCCAAAAATTACCCAGGA 57.174 42.857 0.00 0.00 0.00 3.86
1786 1798 3.314080 CCGTGGTGTGTAAATTGTTCAGT 59.686 43.478 0.00 0.00 0.00 3.41
1806 1818 3.124636 CCCATTAACGAAACAGAGTTCCG 59.875 47.826 0.00 0.00 0.00 4.30
1827 1839 7.222999 TCGAATTTTACATGACAACAAAAACCC 59.777 33.333 0.00 0.00 0.00 4.11
1883 1901 8.415553 TCATGATCTTCAACTTCAAATTGTTGT 58.584 29.630 0.00 0.00 42.71 3.32
1899 1917 6.492007 ACAGTTGTTGACATCATGATCTTC 57.508 37.500 4.86 6.08 0.00 2.87
1920 1938 7.731054 AGGAATTTTGTTTGCTTGGTAATACA 58.269 30.769 0.00 0.00 0.00 2.29
1922 1940 9.921637 CTTAGGAATTTTGTTTGCTTGGTAATA 57.078 29.630 0.00 0.00 0.00 0.98
2056 2100 1.546029 CTCGTGGTCCATCTGAGTTGA 59.454 52.381 0.00 0.00 0.00 3.18
2060 2104 1.546029 TCAACTCGTGGTCCATCTGAG 59.454 52.381 14.05 14.05 0.00 3.35
2089 2133 4.703897 TGTTAACTGCTAGCTGACTGTTT 58.296 39.130 26.29 12.87 31.51 2.83
2145 2189 3.666253 TCGCGCAGTCCTTGTCGA 61.666 61.111 8.75 0.00 33.72 4.20
2164 2208 2.766400 GCTCCTCTCCACGTCCTCG 61.766 68.421 0.00 0.00 43.34 4.63
2175 2219 3.024356 TCCTCTCCGGGCTCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
2498 2542 0.108472 TGTCAGAGCCTGAGAATGCG 60.108 55.000 5.28 0.00 41.46 4.73
2504 2548 2.496871 AGTCAGATTGTCAGAGCCTGAG 59.503 50.000 5.28 0.00 41.46 3.35
2510 2554 8.034215 AGTATTTCTTCAGTCAGATTGTCAGAG 58.966 37.037 0.00 0.00 0.00 3.35
2519 2563 6.918067 TTCCAGAGTATTTCTTCAGTCAGA 57.082 37.500 0.00 0.00 32.41 3.27
2520 2564 7.117523 CACTTTCCAGAGTATTTCTTCAGTCAG 59.882 40.741 0.00 0.00 32.41 3.51
2521 2565 6.931281 CACTTTCCAGAGTATTTCTTCAGTCA 59.069 38.462 0.00 0.00 32.41 3.41
2522 2566 6.128418 GCACTTTCCAGAGTATTTCTTCAGTC 60.128 42.308 0.00 0.00 32.41 3.51
2523 2567 5.703130 GCACTTTCCAGAGTATTTCTTCAGT 59.297 40.000 0.00 0.00 32.41 3.41
2524 2568 5.702670 TGCACTTTCCAGAGTATTTCTTCAG 59.297 40.000 0.00 0.00 32.41 3.02
2525 2569 5.470098 GTGCACTTTCCAGAGTATTTCTTCA 59.530 40.000 10.32 0.00 32.41 3.02
2526 2570 5.703130 AGTGCACTTTCCAGAGTATTTCTTC 59.297 40.000 15.25 0.00 32.41 2.87
2527 2571 5.471456 CAGTGCACTTTCCAGAGTATTTCTT 59.529 40.000 18.94 0.00 32.41 2.52
2528 2572 4.999950 CAGTGCACTTTCCAGAGTATTTCT 59.000 41.667 18.94 0.00 36.25 2.52
2529 2573 4.997395 TCAGTGCACTTTCCAGAGTATTTC 59.003 41.667 18.94 0.00 0.00 2.17
2530 2574 4.757149 GTCAGTGCACTTTCCAGAGTATTT 59.243 41.667 18.94 0.00 0.00 1.40
2531 2575 4.202357 TGTCAGTGCACTTTCCAGAGTATT 60.202 41.667 18.94 0.00 0.00 1.89
2532 2576 3.324846 TGTCAGTGCACTTTCCAGAGTAT 59.675 43.478 18.94 0.00 0.00 2.12
2533 2577 2.698274 TGTCAGTGCACTTTCCAGAGTA 59.302 45.455 18.94 0.44 0.00 2.59
2534 2578 1.486310 TGTCAGTGCACTTTCCAGAGT 59.514 47.619 18.94 0.00 0.00 3.24
2535 2579 2.245159 TGTCAGTGCACTTTCCAGAG 57.755 50.000 18.94 3.94 0.00 3.35
2536 2580 2.936919 ATGTCAGTGCACTTTCCAGA 57.063 45.000 18.94 8.31 0.00 3.86
2537 2581 2.417933 GCTATGTCAGTGCACTTTCCAG 59.582 50.000 18.94 11.78 0.00 3.86
2538 2582 2.426522 GCTATGTCAGTGCACTTTCCA 58.573 47.619 18.94 14.18 0.00 3.53
2539 2583 1.740025 GGCTATGTCAGTGCACTTTCC 59.260 52.381 18.94 8.43 0.00 3.13
2540 2584 2.426522 TGGCTATGTCAGTGCACTTTC 58.573 47.619 18.94 13.57 0.00 2.62
2541 2585 2.566833 TGGCTATGTCAGTGCACTTT 57.433 45.000 18.94 5.10 0.00 2.66
2542 2586 2.795231 ATGGCTATGTCAGTGCACTT 57.205 45.000 18.94 5.14 0.00 3.16
2543 2587 2.795231 AATGGCTATGTCAGTGCACT 57.205 45.000 15.25 15.25 0.00 4.40
2544 2588 3.012518 AGAAATGGCTATGTCAGTGCAC 58.987 45.455 9.40 9.40 0.00 4.57
2545 2589 3.054875 AGAGAAATGGCTATGTCAGTGCA 60.055 43.478 2.74 0.00 0.00 4.57
2546 2590 3.311871 CAGAGAAATGGCTATGTCAGTGC 59.688 47.826 2.74 0.00 0.00 4.40
2547 2591 4.763073 TCAGAGAAATGGCTATGTCAGTG 58.237 43.478 2.74 0.00 0.00 3.66
2548 2592 5.181748 GTTCAGAGAAATGGCTATGTCAGT 58.818 41.667 2.74 0.00 0.00 3.41
2549 2593 4.269603 CGTTCAGAGAAATGGCTATGTCAG 59.730 45.833 2.74 0.00 0.00 3.51
2550 2594 4.081697 TCGTTCAGAGAAATGGCTATGTCA 60.082 41.667 2.74 0.00 0.00 3.58
2551 2595 4.433615 TCGTTCAGAGAAATGGCTATGTC 58.566 43.478 0.00 0.00 0.00 3.06
2552 2596 4.471904 TCGTTCAGAGAAATGGCTATGT 57.528 40.909 0.00 0.00 0.00 2.29
2553 2597 5.998454 AATCGTTCAGAGAAATGGCTATG 57.002 39.130 0.00 0.00 0.00 2.23
2554 2598 6.352516 AGAAATCGTTCAGAGAAATGGCTAT 58.647 36.000 0.00 0.00 36.09 2.97
2555 2599 5.734720 AGAAATCGTTCAGAGAAATGGCTA 58.265 37.500 0.00 0.00 36.09 3.93
2556 2600 4.583871 AGAAATCGTTCAGAGAAATGGCT 58.416 39.130 0.00 0.00 36.09 4.75
2557 2601 4.954092 AGAAATCGTTCAGAGAAATGGC 57.046 40.909 0.00 0.00 36.09 4.40



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.