Multiple sequence alignment - TraesCS7A01G384700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G384700 chr7A 100.000 4503 0 0 1 4503 561178338 561173836 0.000000e+00 8316.0
1 TraesCS7A01G384700 chr7A 92.424 198 13 2 2517 2713 723355849 723356045 9.540000e-72 281.0
2 TraesCS7A01G384700 chr7A 82.540 126 19 2 4379 4503 731769981 731769858 1.710000e-19 108.0
3 TraesCS7A01G384700 chr7D 88.646 1920 98 45 683 2525 495341952 495340076 0.000000e+00 2228.0
4 TraesCS7A01G384700 chr7D 89.924 1052 63 24 2709 3724 495340086 495339042 0.000000e+00 1315.0
5 TraesCS7A01G384700 chr7D 94.037 587 23 11 1 582 495342530 495341951 0.000000e+00 880.0
6 TraesCS7A01G384700 chr7D 84.800 125 14 5 4382 4503 416422811 416422689 2.200000e-23 121.0
7 TraesCS7A01G384700 chr7B 91.729 1076 55 17 2714 3778 523625253 523624201 0.000000e+00 1463.0
8 TraesCS7A01G384700 chr7B 89.730 1110 66 27 1437 2521 523626334 523625248 0.000000e+00 1375.0
9 TraesCS7A01G384700 chr7B 92.375 682 29 9 722 1393 523627766 523627098 0.000000e+00 950.0
10 TraesCS7A01G384700 chr7B 93.617 188 7 4 398 582 523628036 523627851 4.440000e-70 276.0
11 TraesCS7A01G384700 chr7B 97.872 47 0 1 3902 3947 666664325 666664371 3.730000e-11 80.5
12 TraesCS7A01G384700 chr2A 96.703 728 19 4 3776 4503 352991870 352992592 0.000000e+00 1206.0
13 TraesCS7A01G384700 chr2A 91.525 59 4 1 3902 3959 20935545 20935487 3.730000e-11 80.5
14 TraesCS7A01G384700 chr2A 96.875 32 1 0 671 702 35943940 35943909 2.000000e-03 54.7
15 TraesCS7A01G384700 chr4A 94.850 602 30 1 3902 4503 607878774 607878174 0.000000e+00 939.0
16 TraesCS7A01G384700 chr4A 93.434 198 11 2 2518 2715 124610216 124610411 4.410000e-75 292.0
17 TraesCS7A01G384700 chr4A 93.299 194 12 1 2526 2719 457823948 457823756 7.370000e-73 285.0
18 TraesCS7A01G384700 chr4A 92.913 127 8 1 3777 3903 607878932 607878807 2.770000e-42 183.0
19 TraesCS7A01G384700 chr4A 91.589 107 6 1 581 684 149049327 149049221 1.310000e-30 145.0
20 TraesCS7A01G384700 chr4A 88.596 114 10 1 580 690 400754035 400753922 7.860000e-28 135.0
21 TraesCS7A01G384700 chr4A 92.857 56 4 0 3905 3960 492943965 492944020 1.040000e-11 82.4
22 TraesCS7A01G384700 chr3A 97.328 524 11 2 3956 4476 717938813 717939336 0.000000e+00 887.0
23 TraesCS7A01G384700 chr6A 93.035 201 12 2 2518 2717 7988650 7988451 4.410000e-75 292.0
24 TraesCS7A01G384700 chr6A 90.000 110 8 1 578 684 505440403 505440512 6.070000e-29 139.0
25 TraesCS7A01G384700 chr6A 87.931 116 11 1 577 689 66370821 66370936 2.830000e-27 134.0
26 TraesCS7A01G384700 chr6A 90.476 63 3 3 3778 3839 105026120 105026180 3.730000e-11 80.5
27 TraesCS7A01G384700 chr1A 95.161 186 8 1 2525 2710 271887430 271887614 4.410000e-75 292.0
28 TraesCS7A01G384700 chr1A 92.462 199 14 1 2517 2715 17244418 17244615 2.650000e-72 283.0
29 TraesCS7A01G384700 chr1A 91.262 206 10 5 2520 2723 581544081 581543882 1.600000e-69 274.0
30 TraesCS7A01G384700 chr6D 90.821 207 16 2 2518 2722 412014529 412014324 1.600000e-69 274.0
31 TraesCS7A01G384700 chr6D 100.000 46 0 0 3903 3948 237742385 237742340 8.030000e-13 86.1
32 TraesCS7A01G384700 chr6D 89.474 57 4 2 3774 3828 38806226 38806282 2.250000e-08 71.3
33 TraesCS7A01G384700 chr1B 91.133 203 14 4 2518 2719 242246812 242247011 5.740000e-69 272.0
34 TraesCS7A01G384700 chr1B 82.540 126 19 2 4379 4503 161495104 161494981 1.710000e-19 108.0
35 TraesCS7A01G384700 chr5D 91.304 115 7 1 581 692 72874112 72873998 2.170000e-33 154.0
36 TraesCS7A01G384700 chr4B 88.696 115 9 2 578 688 553528511 553528397 2.180000e-28 137.0
37 TraesCS7A01G384700 chr3B 89.908 109 8 2 580 685 807957874 807957982 2.180000e-28 137.0
38 TraesCS7A01G384700 chr3B 88.060 67 4 4 3882 3946 741467659 741467595 4.830000e-10 76.8
39 TraesCS7A01G384700 chr2B 89.286 112 9 1 577 685 793498807 793498696 2.180000e-28 137.0
40 TraesCS7A01G384700 chr2B 87.500 120 12 1 579 695 620631485 620631604 7.860000e-28 135.0
41 TraesCS7A01G384700 chr6B 92.453 53 3 1 3777 3828 394300237 394300185 1.740000e-09 75.0
42 TraesCS7A01G384700 chr5B 89.831 59 5 1 3891 3949 711414693 711414636 1.740000e-09 75.0
43 TraesCS7A01G384700 chr5B 84.848 66 8 1 3774 3839 100834090 100834153 1.050000e-06 65.8
44 TraesCS7A01G384700 chr4D 89.062 64 2 3 3889 3947 290071551 290071614 1.740000e-09 75.0
45 TraesCS7A01G384700 chr4D 87.097 62 5 1 3778 3839 462827759 462827701 2.910000e-07 67.6
46 TraesCS7A01G384700 chr1D 88.710 62 6 1 3764 3825 414894517 414894577 1.740000e-09 75.0
47 TraesCS7A01G384700 chr5A 89.286 56 4 2 4449 4503 382274735 382274789 8.080000e-08 69.4
48 TraesCS7A01G384700 chr2D 86.364 66 6 1 3774 3839 542428086 542428148 8.080000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G384700 chr7A 561173836 561178338 4502 True 8316.000000 8316 100.00000 1 4503 1 chr7A.!!$R1 4502
1 TraesCS7A01G384700 chr7D 495339042 495342530 3488 True 1474.333333 2228 90.86900 1 3724 3 chr7D.!!$R2 3723
2 TraesCS7A01G384700 chr7B 523624201 523628036 3835 True 1016.000000 1463 91.86275 398 3778 4 chr7B.!!$R1 3380
3 TraesCS7A01G384700 chr2A 352991870 352992592 722 False 1206.000000 1206 96.70300 3776 4503 1 chr2A.!!$F1 727
4 TraesCS7A01G384700 chr4A 607878174 607878932 758 True 561.000000 939 93.88150 3777 4503 2 chr4A.!!$R4 726
5 TraesCS7A01G384700 chr3A 717938813 717939336 523 False 887.000000 887 97.32800 3956 4476 1 chr3A.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 1059 0.675522 GCACCGCTTAGCTACCCAAA 60.676 55.0 1.76 0.0 0.0 3.28 F
2107 2961 0.037734 GGTGGTGGTCGGGAAGAAAT 59.962 55.0 0.00 0.0 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 3394 0.109723 GTGCCCTAGACACACCCAAA 59.890 55.0 10.07 0.0 37.96 3.28 R
3640 4548 0.038166 AATGGATGGGCACGACAACT 59.962 50.0 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 181 3.758554 GTGCTACTGACCCATTTGATGTT 59.241 43.478 0.00 0.00 0.00 2.71
197 199 9.473007 TTTGATGTTTATTCACCATCCATAGAA 57.527 29.630 0.00 0.00 35.26 2.10
198 200 9.645128 TTGATGTTTATTCACCATCCATAGAAT 57.355 29.630 0.00 0.00 35.26 2.40
319 322 1.523758 ACTCGAAGGCCAACAATCAC 58.476 50.000 5.01 0.00 0.00 3.06
331 334 4.547398 GCCAACAATCACGAAAACGAAAAC 60.547 41.667 0.00 0.00 0.00 2.43
371 375 1.271652 TGACGCAAATCCTAAAGCCCA 60.272 47.619 0.00 0.00 0.00 5.36
427 433 2.538132 GCACGTTGAAACAGGTACACAC 60.538 50.000 0.00 0.00 0.00 3.82
469 475 7.302350 TGACAAATAAATCATGTGGTAGACG 57.698 36.000 0.00 0.00 0.00 4.18
512 518 8.742777 AGATGTTAATTAGCAAATCTCAAAGCA 58.257 29.630 6.08 0.00 0.00 3.91
554 560 4.201990 GCTTGAATCCACTGGCTAGAAATG 60.202 45.833 3.17 0.00 0.00 2.32
568 577 6.183360 TGGCTAGAAATGTAGATGTGAGGTAC 60.183 42.308 0.00 0.00 0.00 3.34
581 590 8.885693 AGATGTGAGGTACTATATTGCATCTA 57.114 34.615 0.00 0.00 41.55 1.98
582 591 8.744652 AGATGTGAGGTACTATATTGCATCTAC 58.255 37.037 0.00 0.00 41.55 2.59
583 592 8.657387 ATGTGAGGTACTATATTGCATCTACT 57.343 34.615 0.00 0.00 41.55 2.57
584 593 8.112016 TGTGAGGTACTATATTGCATCTACTC 57.888 38.462 0.00 0.00 41.55 2.59
585 594 7.176865 TGTGAGGTACTATATTGCATCTACTCC 59.823 40.741 0.00 0.00 41.55 3.85
586 595 6.663953 TGAGGTACTATATTGCATCTACTCCC 59.336 42.308 0.00 0.00 41.55 4.30
587 596 6.806217 AGGTACTATATTGCATCTACTCCCT 58.194 40.000 0.00 0.00 36.02 4.20
588 597 7.249715 AGGTACTATATTGCATCTACTCCCTT 58.750 38.462 0.00 0.00 36.02 3.95
589 598 7.397761 AGGTACTATATTGCATCTACTCCCTTC 59.602 40.741 0.00 0.00 36.02 3.46
590 599 6.274157 ACTATATTGCATCTACTCCCTTCG 57.726 41.667 0.00 0.00 0.00 3.79
591 600 5.775701 ACTATATTGCATCTACTCCCTTCGT 59.224 40.000 0.00 0.00 0.00 3.85
592 601 3.914426 ATTGCATCTACTCCCTTCGTT 57.086 42.857 0.00 0.00 0.00 3.85
593 602 2.961526 TGCATCTACTCCCTTCGTTC 57.038 50.000 0.00 0.00 0.00 3.95
594 603 1.134367 TGCATCTACTCCCTTCGTTCG 59.866 52.381 0.00 0.00 0.00 3.95
595 604 1.404391 GCATCTACTCCCTTCGTTCGA 59.596 52.381 0.00 0.00 0.00 3.71
596 605 2.159282 GCATCTACTCCCTTCGTTCGAA 60.159 50.000 7.40 7.40 0.00 3.71
597 606 3.675228 GCATCTACTCCCTTCGTTCGAAA 60.675 47.826 0.00 0.00 0.00 3.46
598 607 4.683832 CATCTACTCCCTTCGTTCGAAAT 58.316 43.478 0.00 0.00 0.00 2.17
599 608 4.796038 TCTACTCCCTTCGTTCGAAATT 57.204 40.909 0.00 0.00 0.00 1.82
600 609 5.902613 TCTACTCCCTTCGTTCGAAATTA 57.097 39.130 0.00 0.00 0.00 1.40
601 610 5.644644 TCTACTCCCTTCGTTCGAAATTAC 58.355 41.667 0.00 0.00 0.00 1.89
602 611 4.532314 ACTCCCTTCGTTCGAAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
603 612 4.891260 ACTCCCTTCGTTCGAAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
604 613 4.689345 ACTCCCTTCGTTCGAAATTACTTG 59.311 41.667 0.00 0.00 0.00 3.16
605 614 4.634199 TCCCTTCGTTCGAAATTACTTGT 58.366 39.130 0.00 0.00 0.00 3.16
606 615 4.687483 TCCCTTCGTTCGAAATTACTTGTC 59.313 41.667 0.00 0.00 0.00 3.18
607 616 4.689345 CCCTTCGTTCGAAATTACTTGTCT 59.311 41.667 0.00 0.00 0.00 3.41
608 617 5.163982 CCCTTCGTTCGAAATTACTTGTCTC 60.164 44.000 0.00 0.00 0.00 3.36
609 618 5.442909 CCTTCGTTCGAAATTACTTGTCTCG 60.443 44.000 0.00 0.00 0.00 4.04
610 619 3.916172 TCGTTCGAAATTACTTGTCTCGG 59.084 43.478 0.00 0.00 0.00 4.63
611 620 3.916172 CGTTCGAAATTACTTGTCTCGGA 59.084 43.478 0.00 0.00 0.00 4.55
612 621 4.561606 CGTTCGAAATTACTTGTCTCGGAT 59.438 41.667 0.00 0.00 0.00 4.18
613 622 5.740569 CGTTCGAAATTACTTGTCTCGGATA 59.259 40.000 0.00 0.00 0.00 2.59
614 623 6.417044 CGTTCGAAATTACTTGTCTCGGATAT 59.583 38.462 0.00 0.00 0.00 1.63
615 624 7.588854 CGTTCGAAATTACTTGTCTCGGATATA 59.411 37.037 0.00 0.00 0.00 0.86
616 625 9.241317 GTTCGAAATTACTTGTCTCGGATATAA 57.759 33.333 0.00 0.00 0.00 0.98
617 626 9.806203 TTCGAAATTACTTGTCTCGGATATAAA 57.194 29.630 0.00 0.00 0.00 1.40
618 627 9.976511 TCGAAATTACTTGTCTCGGATATAAAT 57.023 29.630 0.00 0.00 0.00 1.40
662 671 9.539825 ACATCTAGATACATTCATTTCTGTGAC 57.460 33.333 4.54 0.00 0.00 3.67
663 672 9.538508 CATCTAGATACATTCATTTCTGTGACA 57.461 33.333 4.54 0.00 0.00 3.58
665 674 9.942850 TCTAGATACATTCATTTCTGTGACAAA 57.057 29.630 0.00 0.00 0.00 2.83
669 678 9.294030 GATACATTCATTTCTGTGACAAATTCC 57.706 33.333 0.00 0.00 0.00 3.01
670 679 6.151691 ACATTCATTTCTGTGACAAATTCCG 58.848 36.000 0.00 0.00 0.00 4.30
671 680 6.016360 ACATTCATTTCTGTGACAAATTCCGA 60.016 34.615 0.00 0.00 0.00 4.55
672 681 6.384258 TTCATTTCTGTGACAAATTCCGAA 57.616 33.333 0.00 0.00 0.00 4.30
673 682 5.757886 TCATTTCTGTGACAAATTCCGAAC 58.242 37.500 0.00 0.00 0.00 3.95
674 683 3.870723 TTCTGTGACAAATTCCGAACG 57.129 42.857 0.00 0.00 0.00 3.95
675 684 2.139917 TCTGTGACAAATTCCGAACGG 58.860 47.619 6.94 6.94 0.00 4.44
676 685 2.139917 CTGTGACAAATTCCGAACGGA 58.860 47.619 12.04 12.04 43.52 4.69
677 686 2.139917 TGTGACAAATTCCGAACGGAG 58.860 47.619 15.34 7.27 46.06 4.63
678 687 1.463444 GTGACAAATTCCGAACGGAGG 59.537 52.381 15.34 9.59 46.06 4.30
679 688 1.084289 GACAAATTCCGAACGGAGGG 58.916 55.000 15.34 9.28 46.06 4.30
680 689 0.688487 ACAAATTCCGAACGGAGGGA 59.312 50.000 15.34 2.49 46.06 4.20
681 690 1.338769 ACAAATTCCGAACGGAGGGAG 60.339 52.381 15.34 10.18 46.06 4.30
682 691 0.981943 AAATTCCGAACGGAGGGAGT 59.018 50.000 15.34 0.00 46.06 3.85
700 710 6.529220 AGGGAGTAGATGTGAAATAGCAATC 58.471 40.000 0.00 0.00 0.00 2.67
723 733 6.059484 TCCTGTTTGAATTAACCGAGACTTT 58.941 36.000 0.00 0.00 0.00 2.66
727 737 6.540914 TGTTTGAATTAACCGAGACTTTGAGT 59.459 34.615 0.00 0.00 0.00 3.41
739 796 6.590292 CCGAGACTTTGAGTAAATTTGAGCTA 59.410 38.462 0.00 0.00 0.00 3.32
743 800 9.343539 AGACTTTGAGTAAATTTGAGCTAACTT 57.656 29.630 0.00 0.00 0.00 2.66
854 918 6.353602 CCCAACCTACTTCCAACCATAAGTAT 60.354 42.308 0.00 0.00 37.51 2.12
900 971 1.327690 TAGAGCCAACCACGCCTAGG 61.328 60.000 3.67 3.67 0.00 3.02
979 1059 0.675522 GCACCGCTTAGCTACCCAAA 60.676 55.000 1.76 0.00 0.00 3.28
988 1068 2.396157 GCTACCCAAAAGACCGGCG 61.396 63.158 0.00 0.00 0.00 6.46
989 1069 1.004200 CTACCCAAAAGACCGGCGT 60.004 57.895 6.01 0.00 0.00 5.68
990 1070 1.004679 TACCCAAAAGACCGGCGTC 60.005 57.895 6.01 3.61 39.50 5.19
991 1071 2.453379 TACCCAAAAGACCGGCGTCC 62.453 60.000 6.01 0.00 40.12 4.79
1072 1152 2.045280 CGGAGGAGCTACATGGGAG 58.955 63.158 0.00 0.00 0.00 4.30
1073 1153 1.751563 GGAGGAGCTACATGGGAGC 59.248 63.158 12.66 12.66 40.42 4.70
1074 1154 1.365633 GAGGAGCTACATGGGAGCG 59.634 63.158 14.18 0.00 44.98 5.03
1307 1388 2.365617 TCGCTCCCATACCTGATTCTTC 59.634 50.000 0.00 0.00 0.00 2.87
1321 1402 1.553690 TTCTTCCCTCTTCCTGGCCG 61.554 60.000 0.00 0.00 0.00 6.13
1333 1414 3.687321 CTGGCCGCCAGCACTACAT 62.687 63.158 26.28 0.00 45.13 2.29
1337 1418 0.657840 GCCGCCAGCACTACATTTAG 59.342 55.000 0.00 0.00 42.97 1.85
1339 1420 1.933853 CCGCCAGCACTACATTTAGTC 59.066 52.381 0.00 0.00 36.31 2.59
1352 1433 5.689383 ACATTTAGTCACACATTCACACC 57.311 39.130 0.00 0.00 0.00 4.16
1384 1465 3.767711 TCTCCAGTGAACAGCTCTTCTA 58.232 45.455 3.29 0.00 0.00 2.10
1428 1509 5.826208 GGATTTCCTTCCGCTTCCTTTAATA 59.174 40.000 0.00 0.00 0.00 0.98
1432 1513 5.751586 TCCTTCCGCTTCCTTTAATATGTT 58.248 37.500 0.00 0.00 0.00 2.71
1433 1514 5.588648 TCCTTCCGCTTCCTTTAATATGTTG 59.411 40.000 0.00 0.00 0.00 3.33
1479 2294 2.029244 CGTTCATGATGCAAGTACGTCC 59.971 50.000 0.00 0.00 0.00 4.79
1496 2311 0.729116 TCCGCAGCAGTAGTACGTAC 59.271 55.000 18.10 18.10 0.00 3.67
1500 2315 2.477357 CGCAGCAGTAGTACGTACACAT 60.477 50.000 26.55 9.67 33.55 3.21
1534 2350 3.932710 TGGCACAAAGATACAAGATCGAC 59.067 43.478 0.00 0.00 31.92 4.20
1567 2383 1.678635 CGAAATGGGCCAGCCAAGA 60.679 57.895 13.78 0.00 37.98 3.02
1568 2384 1.250154 CGAAATGGGCCAGCCAAGAA 61.250 55.000 13.78 0.00 37.98 2.52
1569 2385 0.533951 GAAATGGGCCAGCCAAGAAG 59.466 55.000 13.78 0.00 37.98 2.85
1579 2395 1.214589 GCCAAGAAGCACATGCAGG 59.785 57.895 6.64 0.00 45.16 4.85
1585 2401 2.807631 GAAGCACATGCAGGCAACCG 62.808 60.000 6.64 0.00 45.16 4.44
1593 2409 2.937469 TGCAGGCAACCGATTAAATG 57.063 45.000 0.00 0.00 37.17 2.32
1691 2525 1.137404 CCATTTCGGCCGAAAGCAG 59.863 57.895 44.58 36.19 45.66 4.24
1699 2533 1.503294 GGCCGAAAGCAGCTCTATAC 58.497 55.000 0.00 0.00 46.50 1.47
1736 2570 3.243035 CGTTCCAGACACAGCAAATTTCA 60.243 43.478 0.00 0.00 0.00 2.69
1758 2592 4.919754 CAGTTTCATCAGTTAGGCAAAAGC 59.080 41.667 0.00 0.00 0.00 3.51
1763 2597 1.535462 TCAGTTAGGCAAAAGCGCTTC 59.465 47.619 25.24 11.19 0.00 3.86
1764 2598 1.537202 CAGTTAGGCAAAAGCGCTTCT 59.463 47.619 25.24 18.14 0.00 2.85
1765 2599 2.742053 CAGTTAGGCAAAAGCGCTTCTA 59.258 45.455 25.24 17.05 0.00 2.10
1766 2600 2.742589 AGTTAGGCAAAAGCGCTTCTAC 59.257 45.455 25.24 14.96 0.00 2.59
1767 2601 2.465860 TAGGCAAAAGCGCTTCTACA 57.534 45.000 25.24 4.04 0.00 2.74
1768 2602 0.875059 AGGCAAAAGCGCTTCTACAC 59.125 50.000 25.24 12.91 0.00 2.90
1769 2603 0.875059 GGCAAAAGCGCTTCTACACT 59.125 50.000 25.24 2.98 0.00 3.55
1772 2606 2.478894 GCAAAAGCGCTTCTACACTACA 59.521 45.455 25.24 0.00 0.00 2.74
1783 2617 4.233123 TCTACACTACACACTTTCACCG 57.767 45.455 0.00 0.00 0.00 4.94
1794 2628 1.344763 ACTTTCACCGTCTCCTCCTTG 59.655 52.381 0.00 0.00 0.00 3.61
1803 2637 2.029649 CGTCTCCTCCTTGTTTCCGTAA 60.030 50.000 0.00 0.00 0.00 3.18
1807 2641 4.530946 TCTCCTCCTTGTTTCCGTAAGAAT 59.469 41.667 0.00 0.00 43.02 2.40
1839 2673 4.570663 GGGATCGACGGTCCGCAG 62.571 72.222 20.57 5.65 36.58 5.18
1894 2728 1.226435 CTACCGCTCACTGCTCGAC 60.226 63.158 0.00 0.00 40.11 4.20
1967 2801 1.008538 GAACCTTTGCAGTGCACCG 60.009 57.895 19.58 11.56 38.71 4.94
1987 2821 0.392461 TAGACAAGGATGCCGCAACC 60.392 55.000 11.64 11.64 0.00 3.77
2009 2863 5.291971 CCAATTAATGGCTAACCTGAATGC 58.708 41.667 0.00 0.00 43.80 3.56
2107 2961 0.037734 GGTGGTGGTCGGGAAGAAAT 59.962 55.000 0.00 0.00 0.00 2.17
2110 2964 1.144093 TGGTGGTCGGGAAGAAATTGT 59.856 47.619 0.00 0.00 0.00 2.71
2113 2967 3.439129 GGTGGTCGGGAAGAAATTGTAAG 59.561 47.826 0.00 0.00 0.00 2.34
2137 2991 1.492319 TTTCCGCTTTGTCCACGTCG 61.492 55.000 0.00 0.00 0.00 5.12
2138 2992 2.632136 TTCCGCTTTGTCCACGTCGT 62.632 55.000 0.00 0.00 0.00 4.34
2139 2993 2.654912 CCGCTTTGTCCACGTCGTC 61.655 63.158 0.00 0.00 0.00 4.20
2161 3015 3.423571 CAGAAACGCATGAATCTTCAGC 58.576 45.455 0.00 2.48 41.08 4.26
2266 3125 1.269936 GGATGGGTGCATGCATTAAGC 60.270 52.381 25.64 14.33 45.96 3.09
2385 3246 2.017049 ACAAAAGGCGGAGATATGTGC 58.983 47.619 0.00 0.00 0.00 4.57
2483 3355 2.095567 CCGCTTGTTTCAGAGTTCATGG 60.096 50.000 0.00 0.00 0.00 3.66
2512 3384 6.258507 TGAAACAGCAGCAGTATACATATGTG 59.741 38.462 18.81 2.22 0.00 3.21
2516 3388 4.101585 AGCAGCAGTATACATATGTGGTGT 59.898 41.667 18.81 4.61 38.56 4.16
2517 3389 4.816385 GCAGCAGTATACATATGTGGTGTT 59.184 41.667 18.81 5.53 38.56 3.32
2518 3390 5.296780 GCAGCAGTATACATATGTGGTGTTT 59.703 40.000 18.81 0.00 38.56 2.83
2519 3391 6.183360 GCAGCAGTATACATATGTGGTGTTTT 60.183 38.462 18.81 0.00 38.56 2.43
2520 3392 7.628366 GCAGCAGTATACATATGTGGTGTTTTT 60.628 37.037 18.81 0.00 38.56 1.94
2521 3393 7.910162 CAGCAGTATACATATGTGGTGTTTTTC 59.090 37.037 18.81 0.08 33.09 2.29
2522 3394 7.829211 AGCAGTATACATATGTGGTGTTTTTCT 59.171 33.333 18.81 2.25 0.00 2.52
2523 3395 8.458843 GCAGTATACATATGTGGTGTTTTTCTT 58.541 33.333 18.81 0.00 0.00 2.52
2526 3398 9.567848 GTATACATATGTGGTGTTTTTCTTTGG 57.432 33.333 18.81 0.00 0.00 3.28
2527 3399 5.852827 ACATATGTGGTGTTTTTCTTTGGG 58.147 37.500 7.78 0.00 0.00 4.12
2528 3400 5.365314 ACATATGTGGTGTTTTTCTTTGGGT 59.635 36.000 7.78 0.00 0.00 4.51
2529 3401 3.601443 TGTGGTGTTTTTCTTTGGGTG 57.399 42.857 0.00 0.00 0.00 4.61
2530 3402 2.900546 TGTGGTGTTTTTCTTTGGGTGT 59.099 40.909 0.00 0.00 0.00 4.16
2531 3403 3.258228 GTGGTGTTTTTCTTTGGGTGTG 58.742 45.455 0.00 0.00 0.00 3.82
2532 3404 2.900546 TGGTGTTTTTCTTTGGGTGTGT 59.099 40.909 0.00 0.00 0.00 3.72
2533 3405 3.056465 TGGTGTTTTTCTTTGGGTGTGTC 60.056 43.478 0.00 0.00 0.00 3.67
2534 3406 3.194755 GGTGTTTTTCTTTGGGTGTGTCT 59.805 43.478 0.00 0.00 0.00 3.41
2535 3407 4.399934 GGTGTTTTTCTTTGGGTGTGTCTA 59.600 41.667 0.00 0.00 0.00 2.59
2536 3408 5.449999 GGTGTTTTTCTTTGGGTGTGTCTAG 60.450 44.000 0.00 0.00 0.00 2.43
2537 3409 4.642885 TGTTTTTCTTTGGGTGTGTCTAGG 59.357 41.667 0.00 0.00 0.00 3.02
2538 3410 3.502123 TTTCTTTGGGTGTGTCTAGGG 57.498 47.619 0.00 0.00 0.00 3.53
2539 3411 0.690762 TCTTTGGGTGTGTCTAGGGC 59.309 55.000 0.00 0.00 0.00 5.19
2540 3412 0.400213 CTTTGGGTGTGTCTAGGGCA 59.600 55.000 0.00 0.00 0.00 5.36
2541 3413 0.109723 TTTGGGTGTGTCTAGGGCAC 59.890 55.000 10.20 10.20 37.37 5.01
2542 3414 1.057275 TTGGGTGTGTCTAGGGCACA 61.057 55.000 14.22 14.22 43.60 4.57
2543 3415 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
2544 3416 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
2545 3417 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
2546 3418 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
2547 3419 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
2548 3420 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
2549 3421 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
2550 3422 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
2568 3440 5.515797 AGATGTGCTCTAGTTATTACGCA 57.484 39.130 0.00 0.00 30.26 5.24
2569 3441 6.090483 AGATGTGCTCTAGTTATTACGCAT 57.910 37.500 0.00 0.00 30.26 4.73
2570 3442 6.153067 AGATGTGCTCTAGTTATTACGCATC 58.847 40.000 0.00 0.00 42.47 3.91
2571 3443 5.515797 TGTGCTCTAGTTATTACGCATCT 57.484 39.130 0.00 0.00 0.00 2.90
2572 3444 6.628919 TGTGCTCTAGTTATTACGCATCTA 57.371 37.500 0.00 0.00 0.00 1.98
2573 3445 7.034685 TGTGCTCTAGTTATTACGCATCTAA 57.965 36.000 0.00 0.00 0.00 2.10
2574 3446 7.139392 TGTGCTCTAGTTATTACGCATCTAAG 58.861 38.462 0.00 0.00 0.00 2.18
2575 3447 7.140048 GTGCTCTAGTTATTACGCATCTAAGT 58.860 38.462 0.00 0.00 0.00 2.24
2576 3448 7.113684 GTGCTCTAGTTATTACGCATCTAAGTG 59.886 40.741 0.00 0.00 0.00 3.16
2577 3449 7.012989 TGCTCTAGTTATTACGCATCTAAGTGA 59.987 37.037 0.00 0.00 0.00 3.41
2578 3450 7.535940 GCTCTAGTTATTACGCATCTAAGTGAG 59.464 40.741 0.00 0.00 0.00 3.51
2579 3451 8.447924 TCTAGTTATTACGCATCTAAGTGAGT 57.552 34.615 0.00 0.00 36.16 3.41
2580 3452 8.343366 TCTAGTTATTACGCATCTAAGTGAGTG 58.657 37.037 0.00 0.00 34.03 3.51
2581 3453 7.096884 AGTTATTACGCATCTAAGTGAGTGA 57.903 36.000 0.00 0.00 34.03 3.41
2582 3454 7.544622 AGTTATTACGCATCTAAGTGAGTGAA 58.455 34.615 0.00 0.00 34.03 3.18
2583 3455 8.198109 AGTTATTACGCATCTAAGTGAGTGAAT 58.802 33.333 0.00 0.00 34.03 2.57
2584 3456 8.480853 GTTATTACGCATCTAAGTGAGTGAATC 58.519 37.037 0.00 0.00 34.03 2.52
2585 3457 4.456280 ACGCATCTAAGTGAGTGAATCA 57.544 40.909 0.00 0.00 34.79 2.57
2586 3458 5.016051 ACGCATCTAAGTGAGTGAATCAT 57.984 39.130 0.00 0.00 40.92 2.45
2587 3459 4.807834 ACGCATCTAAGTGAGTGAATCATG 59.192 41.667 0.00 0.00 40.92 3.07
2588 3460 4.318618 CGCATCTAAGTGAGTGAATCATGC 60.319 45.833 0.00 0.00 40.92 4.06
2589 3461 4.573607 GCATCTAAGTGAGTGAATCATGCA 59.426 41.667 0.00 0.00 40.92 3.96
2590 3462 5.238868 GCATCTAAGTGAGTGAATCATGCAT 59.761 40.000 0.00 0.00 40.92 3.96
2591 3463 6.426025 GCATCTAAGTGAGTGAATCATGCATA 59.574 38.462 0.00 0.00 40.92 3.14
2592 3464 7.041576 GCATCTAAGTGAGTGAATCATGCATAA 60.042 37.037 0.00 0.00 40.92 1.90
2593 3465 8.833493 CATCTAAGTGAGTGAATCATGCATAAA 58.167 33.333 0.00 0.00 40.92 1.40
2594 3466 8.791327 TCTAAGTGAGTGAATCATGCATAAAA 57.209 30.769 0.00 0.00 40.92 1.52
2595 3467 8.886719 TCTAAGTGAGTGAATCATGCATAAAAG 58.113 33.333 0.00 0.00 40.92 2.27
2596 3468 7.692460 AAGTGAGTGAATCATGCATAAAAGA 57.308 32.000 0.00 0.00 40.92 2.52
2597 3469 7.317842 AGTGAGTGAATCATGCATAAAAGAG 57.682 36.000 0.00 0.00 40.92 2.85
2598 3470 6.318144 AGTGAGTGAATCATGCATAAAAGAGG 59.682 38.462 0.00 0.00 40.92 3.69
2599 3471 6.317140 GTGAGTGAATCATGCATAAAAGAGGA 59.683 38.462 0.00 0.00 40.92 3.71
2600 3472 6.885918 TGAGTGAATCATGCATAAAAGAGGAA 59.114 34.615 0.00 0.00 31.12 3.36
2601 3473 7.394077 TGAGTGAATCATGCATAAAAGAGGAAA 59.606 33.333 0.00 0.00 31.12 3.13
2602 3474 8.125978 AGTGAATCATGCATAAAAGAGGAAAA 57.874 30.769 0.00 0.00 0.00 2.29
2603 3475 8.248945 AGTGAATCATGCATAAAAGAGGAAAAG 58.751 33.333 0.00 0.00 0.00 2.27
2604 3476 8.246180 GTGAATCATGCATAAAAGAGGAAAAGA 58.754 33.333 0.00 0.00 0.00 2.52
2605 3477 8.805175 TGAATCATGCATAAAAGAGGAAAAGAA 58.195 29.630 0.00 0.00 0.00 2.52
2606 3478 9.643693 GAATCATGCATAAAAGAGGAAAAGAAA 57.356 29.630 0.00 0.00 0.00 2.52
2648 3520 9.685276 ATCCACACTAATTTCAATGTAAGATCA 57.315 29.630 0.00 0.00 0.00 2.92
2649 3521 9.513906 TCCACACTAATTTCAATGTAAGATCAA 57.486 29.630 0.00 0.00 0.00 2.57
2659 3531 9.904198 TTTCAATGTAAGATCAATGACATAGGA 57.096 29.630 0.00 0.00 32.31 2.94
2660 3532 8.893219 TCAATGTAAGATCAATGACATAGGAC 57.107 34.615 0.00 0.00 32.31 3.85
2661 3533 8.708378 TCAATGTAAGATCAATGACATAGGACT 58.292 33.333 0.00 0.00 32.31 3.85
2662 3534 9.334947 CAATGTAAGATCAATGACATAGGACTT 57.665 33.333 0.00 0.00 32.31 3.01
2665 3537 9.421399 TGTAAGATCAATGACATAGGACTTAGA 57.579 33.333 0.00 0.00 0.00 2.10
2668 3540 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
2669 3541 8.366401 AGATCAATGACATAGGACTTAGATGTG 58.634 37.037 0.00 0.00 33.99 3.21
2670 3542 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
2671 3543 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
2672 3544 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
2673 3545 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
2674 3546 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
2675 3547 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
2676 3548 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
2677 3549 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
2678 3550 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
2679 3551 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
2680 3552 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
2681 3553 8.023021 AGGACTTAGATGTGCAATACTTATGA 57.977 34.615 0.00 0.00 0.00 2.15
2682 3554 7.928706 AGGACTTAGATGTGCAATACTTATGAC 59.071 37.037 0.00 0.00 0.00 3.06
2683 3555 7.710907 GGACTTAGATGTGCAATACTTATGACA 59.289 37.037 0.00 0.00 0.00 3.58
2684 3556 8.425577 ACTTAGATGTGCAATACTTATGACAC 57.574 34.615 0.00 0.00 0.00 3.67
2685 3557 8.040727 ACTTAGATGTGCAATACTTATGACACA 58.959 33.333 0.00 0.00 38.34 3.72
2686 3558 8.962884 TTAGATGTGCAATACTTATGACACAT 57.037 30.769 13.39 13.39 42.56 3.21
2688 3560 7.488187 GATGTGCAATACTTATGACACATCT 57.512 36.000 22.83 7.26 45.69 2.90
2689 3561 8.593492 GATGTGCAATACTTATGACACATCTA 57.407 34.615 22.83 2.36 45.69 1.98
2690 3562 8.599055 ATGTGCAATACTTATGACACATCTAG 57.401 34.615 9.84 0.00 39.26 2.43
2691 3563 7.781056 TGTGCAATACTTATGACACATCTAGA 58.219 34.615 0.00 0.00 33.26 2.43
2692 3564 8.424133 TGTGCAATACTTATGACACATCTAGAT 58.576 33.333 0.00 0.00 33.26 1.98
2693 3565 8.706936 GTGCAATACTTATGACACATCTAGATG 58.293 37.037 27.63 27.63 44.15 2.90
2732 3604 7.704899 ACTGTTTTTCTTTTGTCGATAAAAGGG 59.295 33.333 33.34 18.92 44.10 3.95
2739 3611 4.759516 TTGTCGATAAAAGGGTTGCTTC 57.240 40.909 0.00 0.00 0.00 3.86
2803 3683 3.121738 TCCGGGAAGTTCAACTTTCTC 57.878 47.619 8.55 0.00 38.80 2.87
2858 3738 4.984161 ACATTGTGTGCAACTAATTTGAGC 59.016 37.500 0.00 0.00 37.39 4.26
2859 3739 4.645762 TTGTGTGCAACTAATTTGAGCA 57.354 36.364 0.00 7.41 37.39 4.26
2860 3740 4.227512 TGTGTGCAACTAATTTGAGCAG 57.772 40.909 10.58 0.00 37.39 4.24
2987 3867 3.767230 CGGACAGCGCACGTTCAG 61.767 66.667 11.47 0.00 0.00 3.02
3192 4100 2.074230 TACTTCGTGGTGGCGAACGT 62.074 55.000 6.36 0.00 44.55 3.99
3203 4111 3.410516 CGAACGTGATGGCGTGCA 61.411 61.111 0.00 0.00 45.00 4.57
3307 4215 3.691342 CTGTTCTCGGCGGTGGGA 61.691 66.667 7.21 0.00 0.00 4.37
3491 4399 2.702592 AGACGTCCACAAAAACTCCA 57.297 45.000 13.01 0.00 0.00 3.86
3508 4416 8.718158 AAAACTCCACCTACTACTAGTAACTT 57.282 34.615 3.76 0.00 29.00 2.66
3535 4443 1.814248 GCTGCTGCTGATCCATCATGA 60.814 52.381 10.92 0.00 36.02 3.07
3638 4546 2.920490 CGTTGGTTTGATTTAATGGCGG 59.080 45.455 0.00 0.00 0.00 6.13
3640 4548 2.808919 TGGTTTGATTTAATGGCGGGA 58.191 42.857 0.00 0.00 0.00 5.14
3641 4549 2.757868 TGGTTTGATTTAATGGCGGGAG 59.242 45.455 0.00 0.00 0.00 4.30
3646 4554 3.013921 TGATTTAATGGCGGGAGTTGTC 58.986 45.455 0.00 0.00 0.00 3.18
3650 4558 4.980805 TGGCGGGAGTTGTCGTGC 62.981 66.667 0.00 0.00 0.00 5.34
3655 4563 1.745489 GGGAGTTGTCGTGCCCATC 60.745 63.158 0.00 0.00 40.39 3.51
3712 4620 8.328758 ACAAATGTATGGAGGATTTTACTCTGA 58.671 33.333 0.00 0.00 35.34 3.27
3713 4621 9.177608 CAAATGTATGGAGGATTTTACTCTGAA 57.822 33.333 0.00 0.00 35.34 3.02
3714 4622 8.970859 AATGTATGGAGGATTTTACTCTGAAG 57.029 34.615 0.00 0.00 35.34 3.02
3753 4661 6.179906 ACTCCTATGTATGGGTCATCTTTG 57.820 41.667 0.00 0.00 0.00 2.77
3754 4662 5.072329 ACTCCTATGTATGGGTCATCTTTGG 59.928 44.000 0.00 0.00 0.00 3.28
3759 4667 4.037222 TGTATGGGTCATCTTTGGAGCTA 58.963 43.478 0.00 0.00 33.45 3.32
3762 4670 4.156455 TGGGTCATCTTTGGAGCTAATC 57.844 45.455 0.00 0.00 33.45 1.75
3815 4723 3.001395 CGTTGCCACGGAATAACAAAA 57.999 42.857 1.68 0.00 43.16 2.44
3816 4724 3.372954 CGTTGCCACGGAATAACAAAAA 58.627 40.909 1.68 0.00 43.16 1.94
3900 4809 5.488919 AGAGAAAAATGATGTACTCCCTCCA 59.511 40.000 0.00 0.00 0.00 3.86
3914 4857 9.049050 TGTACTCCCTCCATAATTAGTACAAAA 57.951 33.333 9.92 0.00 43.62 2.44
4079 5024 6.294176 GCATGACATAAAAACTCAGTGGTCTT 60.294 38.462 0.00 0.00 0.00 3.01
4110 5056 3.549794 CATCTTTCTCATTGTCTCCCCC 58.450 50.000 0.00 0.00 0.00 5.40
4139 5085 2.108952 GCCCCCTCCATTATGTTCATCT 59.891 50.000 0.00 0.00 0.00 2.90
4193 5139 7.173562 CGGAAGTCAGTAGTCTATATACTTGCT 59.826 40.741 14.72 0.00 33.36 3.91
4322 5268 1.869824 TTGGGGTTGGGCCTATGGAC 61.870 60.000 4.53 0.00 37.43 4.02
4336 5282 5.420739 GGCCTATGGACAATCAAGGTAAAAA 59.579 40.000 0.00 0.00 0.00 1.94
4377 5325 8.322906 TGAAACAAGTTCATAGTTGATACTGG 57.677 34.615 0.00 0.00 41.47 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
206 208 7.117092 ACATGCTTACGTTGTTTGTTTCTTTTT 59.883 29.630 0.00 0.00 0.00 1.94
207 209 6.588373 ACATGCTTACGTTGTTTGTTTCTTTT 59.412 30.769 0.00 0.00 0.00 2.27
208 210 6.096695 ACATGCTTACGTTGTTTGTTTCTTT 58.903 32.000 0.00 0.00 0.00 2.52
286 289 1.502231 TCGAGTTGTTCAGCTTCTGC 58.498 50.000 0.00 0.00 40.05 4.26
331 334 1.244816 TCCGGTGCTCATATCCTACG 58.755 55.000 0.00 0.00 0.00 3.51
371 375 6.532365 TTCGTTTTTGTTTTTCTGTTTGCT 57.468 29.167 0.00 0.00 0.00 3.91
427 433 3.228749 GTCAAGATTCATGTGTGTTGCG 58.771 45.455 0.00 0.00 0.00 4.85
520 526 2.890311 TGGATTCAAGCACCACGATTTT 59.110 40.909 0.00 0.00 0.00 1.82
554 560 8.744652 AGATGCAATATAGTACCTCACATCTAC 58.255 37.037 0.00 0.00 39.78 2.59
568 577 6.274157 ACGAAGGGAGTAGATGCAATATAG 57.726 41.667 0.00 0.00 0.00 1.31
581 590 4.532314 AGTAATTTCGAACGAAGGGAGT 57.468 40.909 9.46 0.00 35.38 3.85
582 591 4.689345 ACAAGTAATTTCGAACGAAGGGAG 59.311 41.667 9.46 1.94 35.38 4.30
583 592 4.634199 ACAAGTAATTTCGAACGAAGGGA 58.366 39.130 9.46 0.00 35.38 4.20
584 593 4.689345 AGACAAGTAATTTCGAACGAAGGG 59.311 41.667 9.46 0.00 35.38 3.95
585 594 5.442909 CGAGACAAGTAATTTCGAACGAAGG 60.443 44.000 9.46 0.00 35.38 3.46
586 595 5.442909 CCGAGACAAGTAATTTCGAACGAAG 60.443 44.000 9.46 0.23 35.38 3.79
587 596 4.383649 CCGAGACAAGTAATTTCGAACGAA 59.616 41.667 0.00 5.53 33.38 3.85
588 597 3.916172 CCGAGACAAGTAATTTCGAACGA 59.084 43.478 0.00 0.00 33.38 3.85
589 598 3.916172 TCCGAGACAAGTAATTTCGAACG 59.084 43.478 0.00 0.00 33.38 3.95
590 599 7.695869 ATATCCGAGACAAGTAATTTCGAAC 57.304 36.000 0.00 0.00 33.38 3.95
591 600 9.806203 TTTATATCCGAGACAAGTAATTTCGAA 57.194 29.630 0.00 0.00 33.38 3.71
592 601 9.976511 ATTTATATCCGAGACAAGTAATTTCGA 57.023 29.630 0.00 0.00 33.38 3.71
636 645 9.539825 GTCACAGAAATGAATGTATCTAGATGT 57.460 33.333 15.79 0.00 0.00 3.06
637 646 9.538508 TGTCACAGAAATGAATGTATCTAGATG 57.461 33.333 15.79 0.00 0.00 2.90
639 648 9.942850 TTTGTCACAGAAATGAATGTATCTAGA 57.057 29.630 0.00 0.00 0.00 2.43
643 652 9.294030 GGAATTTGTCACAGAAATGAATGTATC 57.706 33.333 0.00 0.00 0.00 2.24
644 653 7.970061 CGGAATTTGTCACAGAAATGAATGTAT 59.030 33.333 0.00 0.00 0.00 2.29
645 654 7.174080 TCGGAATTTGTCACAGAAATGAATGTA 59.826 33.333 0.00 0.00 0.00 2.29
646 655 6.016360 TCGGAATTTGTCACAGAAATGAATGT 60.016 34.615 0.00 0.00 0.00 2.71
647 656 6.380995 TCGGAATTTGTCACAGAAATGAATG 58.619 36.000 0.00 0.00 0.00 2.67
648 657 6.573664 TCGGAATTTGTCACAGAAATGAAT 57.426 33.333 0.00 0.00 0.00 2.57
649 658 6.205784 GTTCGGAATTTGTCACAGAAATGAA 58.794 36.000 0.00 0.00 0.00 2.57
650 659 5.559991 CGTTCGGAATTTGTCACAGAAATGA 60.560 40.000 0.00 0.00 0.00 2.57
651 660 4.612614 CGTTCGGAATTTGTCACAGAAATG 59.387 41.667 0.00 0.00 0.00 2.32
652 661 4.320202 CCGTTCGGAATTTGTCACAGAAAT 60.320 41.667 5.19 0.00 0.00 2.17
653 662 3.002862 CCGTTCGGAATTTGTCACAGAAA 59.997 43.478 5.19 0.00 0.00 2.52
654 663 2.546368 CCGTTCGGAATTTGTCACAGAA 59.454 45.455 5.19 0.00 0.00 3.02
655 664 2.139917 CCGTTCGGAATTTGTCACAGA 58.860 47.619 5.19 0.00 0.00 3.41
656 665 2.139917 TCCGTTCGGAATTTGTCACAG 58.860 47.619 11.66 0.00 0.00 3.66
657 666 2.139917 CTCCGTTCGGAATTTGTCACA 58.860 47.619 14.79 0.00 33.41 3.58
658 667 1.463444 CCTCCGTTCGGAATTTGTCAC 59.537 52.381 14.79 0.00 33.41 3.67
659 668 1.609580 CCCTCCGTTCGGAATTTGTCA 60.610 52.381 14.79 0.00 33.41 3.58
660 669 1.084289 CCCTCCGTTCGGAATTTGTC 58.916 55.000 14.79 0.00 33.41 3.18
661 670 0.688487 TCCCTCCGTTCGGAATTTGT 59.312 50.000 14.79 0.00 33.41 2.83
662 671 1.338769 ACTCCCTCCGTTCGGAATTTG 60.339 52.381 14.79 8.42 33.41 2.32
663 672 0.981943 ACTCCCTCCGTTCGGAATTT 59.018 50.000 14.79 0.00 33.41 1.82
664 673 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
665 674 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
666 675 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
667 676 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
668 677 0.669077 CATCTACTCCCTCCGTTCGG 59.331 60.000 4.74 4.74 0.00 4.30
669 678 1.065701 CACATCTACTCCCTCCGTTCG 59.934 57.143 0.00 0.00 0.00 3.95
670 679 2.376109 TCACATCTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
671 680 2.526888 TCACATCTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
672 681 2.526888 TTCACATCTACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
673 682 4.559704 GCTATTTCACATCTACTCCCTCCG 60.560 50.000 0.00 0.00 0.00 4.63
674 683 4.345257 TGCTATTTCACATCTACTCCCTCC 59.655 45.833 0.00 0.00 0.00 4.30
675 684 5.537300 TGCTATTTCACATCTACTCCCTC 57.463 43.478 0.00 0.00 0.00 4.30
676 685 5.957771 TTGCTATTTCACATCTACTCCCT 57.042 39.130 0.00 0.00 0.00 4.20
677 686 5.703130 GGATTGCTATTTCACATCTACTCCC 59.297 44.000 0.00 0.00 0.00 4.30
678 687 6.426328 CAGGATTGCTATTTCACATCTACTCC 59.574 42.308 0.00 0.00 0.00 3.85
679 688 6.989169 ACAGGATTGCTATTTCACATCTACTC 59.011 38.462 0.00 0.00 0.00 2.59
680 689 6.893583 ACAGGATTGCTATTTCACATCTACT 58.106 36.000 0.00 0.00 0.00 2.57
681 690 7.559590 AACAGGATTGCTATTTCACATCTAC 57.440 36.000 0.00 0.00 0.00 2.59
682 691 7.828717 TCAAACAGGATTGCTATTTCACATCTA 59.171 33.333 0.00 0.00 0.00 1.98
700 710 5.941948 AAGTCTCGGTTAATTCAAACAGG 57.058 39.130 0.00 0.00 0.00 4.00
723 733 8.677148 AAGTGAAGTTAGCTCAAATTTACTCA 57.323 30.769 11.12 0.00 39.31 3.41
739 796 1.173913 GCCGCCCAATAAGTGAAGTT 58.826 50.000 0.00 0.00 0.00 2.66
743 800 1.621992 TTTTGCCGCCCAATAAGTGA 58.378 45.000 0.00 0.00 32.49 3.41
764 821 0.811915 CGAACTGAGGTCGACTGGAT 59.188 55.000 15.99 0.00 0.00 3.41
854 918 4.137872 GCGTTGGACGGGGATCGA 62.138 66.667 2.48 0.00 42.82 3.59
900 971 1.408702 CTACCTGAGAGAAGGAGCAGC 59.591 57.143 0.00 0.00 40.02 5.25
988 1068 2.511600 CTCCATTGCCGGACGGAC 60.512 66.667 15.99 6.58 37.50 4.79
989 1069 3.000819 ACTCCATTGCCGGACGGA 61.001 61.111 15.99 3.17 37.50 4.69
990 1070 2.511600 GACTCCATTGCCGGACGG 60.512 66.667 5.05 6.35 38.57 4.79
991 1071 2.885644 CGACTCCATTGCCGGACG 60.886 66.667 5.05 0.00 0.00 4.79
1294 1374 4.657969 CAGGAAGAGGGAAGAATCAGGTAT 59.342 45.833 0.00 0.00 0.00 2.73
1321 1402 3.125316 GTGTGACTAAATGTAGTGCTGGC 59.875 47.826 0.00 0.00 40.82 4.85
1333 1414 4.334203 GTGTGGTGTGAATGTGTGACTAAA 59.666 41.667 0.00 0.00 0.00 1.85
1337 1418 1.333619 GGTGTGGTGTGAATGTGTGAC 59.666 52.381 0.00 0.00 0.00 3.67
1339 1420 1.387539 TGGTGTGGTGTGAATGTGTG 58.612 50.000 0.00 0.00 0.00 3.82
1352 1433 1.000843 TCACTGGAGAACGATGGTGTG 59.999 52.381 0.00 0.00 0.00 3.82
1411 1492 6.436843 ACAACATATTAAAGGAAGCGGAAG 57.563 37.500 0.00 0.00 0.00 3.46
1428 1509 1.243902 ATCCGCCGAACAAACAACAT 58.756 45.000 0.00 0.00 0.00 2.71
1432 1513 1.135053 TCGATATCCGCCGAACAAACA 60.135 47.619 0.00 0.00 38.37 2.83
1433 1514 1.563111 TCGATATCCGCCGAACAAAC 58.437 50.000 0.00 0.00 38.37 2.93
1479 2294 1.135888 TGTGTACGTACTACTGCTGCG 60.136 52.381 25.12 0.00 0.00 5.18
1506 2322 5.674525 TCTTGTATCTTTGTGCCAGATAGG 58.325 41.667 0.00 0.00 34.53 2.57
1567 2383 2.922950 CGGTTGCCTGCATGTGCTT 61.923 57.895 6.55 0.00 42.66 3.91
1568 2384 3.367743 CGGTTGCCTGCATGTGCT 61.368 61.111 6.55 0.00 42.66 4.40
1569 2385 2.216750 AATCGGTTGCCTGCATGTGC 62.217 55.000 0.00 0.00 42.50 4.57
1680 2514 1.503294 GTATAGAGCTGCTTTCGGCC 58.497 55.000 2.53 0.00 45.70 6.13
1691 2525 3.053455 CAAACGCTGCTAGGTATAGAGC 58.947 50.000 0.00 0.00 39.25 4.09
1736 2570 4.320494 CGCTTTTGCCTAACTGATGAAACT 60.320 41.667 0.00 0.00 43.93 2.66
1758 2592 4.148348 GTGAAAGTGTGTAGTGTAGAAGCG 59.852 45.833 0.00 0.00 0.00 4.68
1763 2597 3.973657 ACGGTGAAAGTGTGTAGTGTAG 58.026 45.455 0.00 0.00 0.00 2.74
1764 2598 3.633525 AGACGGTGAAAGTGTGTAGTGTA 59.366 43.478 0.00 0.00 0.00 2.90
1765 2599 2.429610 AGACGGTGAAAGTGTGTAGTGT 59.570 45.455 0.00 0.00 0.00 3.55
1766 2600 3.050619 GAGACGGTGAAAGTGTGTAGTG 58.949 50.000 0.00 0.00 0.00 2.74
1767 2601 2.035576 GGAGACGGTGAAAGTGTGTAGT 59.964 50.000 0.00 0.00 0.00 2.73
1768 2602 2.296471 AGGAGACGGTGAAAGTGTGTAG 59.704 50.000 0.00 0.00 0.00 2.74
1769 2603 2.295349 GAGGAGACGGTGAAAGTGTGTA 59.705 50.000 0.00 0.00 0.00 2.90
1772 2606 0.680061 GGAGGAGACGGTGAAAGTGT 59.320 55.000 0.00 0.00 0.00 3.55
1783 2617 3.257624 TCTTACGGAAACAAGGAGGAGAC 59.742 47.826 0.00 0.00 0.00 3.36
1794 2628 3.373130 CCCGGAGAAATTCTTACGGAAAC 59.627 47.826 28.95 4.14 44.59 2.78
1839 2673 2.447887 CGCACGACACTGCATCTCC 61.448 63.158 0.00 0.00 36.94 3.71
1842 2676 2.215478 GACACGCACGACACTGCATC 62.215 60.000 0.00 0.00 36.94 3.91
1894 2728 2.222445 CACGTGGAAACTAAAGGTTCGG 59.778 50.000 7.95 0.00 37.12 4.30
1967 2801 0.727398 GTTGCGGCATCCTTGTCTAC 59.273 55.000 2.28 0.00 0.00 2.59
1987 2821 6.152932 AGCATTCAGGTTAGCCATTAATTG 57.847 37.500 0.00 0.00 37.19 2.32
2009 2863 1.066587 CCTTAGGCCTCGAGCGAAG 59.933 63.158 9.68 6.05 45.17 3.79
2071 2925 0.246635 ACCAGAAAGATCGACGTGGG 59.753 55.000 0.00 2.52 0.00 4.61
2072 2926 1.350193 CACCAGAAAGATCGACGTGG 58.650 55.000 0.00 0.00 0.00 4.94
2107 2961 5.106317 GGACAAAGCGGAAATCATCTTACAA 60.106 40.000 0.00 0.00 0.00 2.41
2110 2964 4.394920 GTGGACAAAGCGGAAATCATCTTA 59.605 41.667 0.00 0.00 0.00 2.10
2113 2967 2.476185 CGTGGACAAAGCGGAAATCATC 60.476 50.000 0.00 0.00 0.00 2.92
2137 2991 3.436704 TGAAGATTCATGCGTTTCTGGAC 59.563 43.478 0.00 0.00 31.01 4.02
2138 2992 3.673902 TGAAGATTCATGCGTTTCTGGA 58.326 40.909 0.00 0.00 31.01 3.86
2139 2993 3.730061 GCTGAAGATTCATGCGTTTCTGG 60.730 47.826 0.00 0.00 36.46 3.86
2266 3125 1.976132 ATGTGACGGATGAGCTGGGG 61.976 60.000 0.00 0.00 0.00 4.96
2332 3192 2.436646 TTGGCGGCTGCTAGCTTC 60.437 61.111 18.85 7.25 41.99 3.86
2418 3279 2.358898 TCGATCTCGACAAGCATGATCA 59.641 45.455 0.00 0.00 44.22 2.92
2483 3355 6.182039 TGTATACTGCTGCTGTTTCATTTC 57.818 37.500 17.29 4.00 0.00 2.17
2512 3384 3.194755 AGACACACCCAAAGAAAAACACC 59.805 43.478 0.00 0.00 0.00 4.16
2516 3388 4.211920 CCCTAGACACACCCAAAGAAAAA 58.788 43.478 0.00 0.00 0.00 1.94
2517 3389 3.827722 CCCTAGACACACCCAAAGAAAA 58.172 45.455 0.00 0.00 0.00 2.29
2518 3390 2.488347 GCCCTAGACACACCCAAAGAAA 60.488 50.000 0.00 0.00 0.00 2.52
2519 3391 1.073284 GCCCTAGACACACCCAAAGAA 59.927 52.381 0.00 0.00 0.00 2.52
2520 3392 0.690762 GCCCTAGACACACCCAAAGA 59.309 55.000 0.00 0.00 0.00 2.52
2521 3393 0.400213 TGCCCTAGACACACCCAAAG 59.600 55.000 0.00 0.00 0.00 2.77
2522 3394 0.109723 GTGCCCTAGACACACCCAAA 59.890 55.000 10.07 0.00 37.96 3.28
2523 3395 1.057275 TGTGCCCTAGACACACCCAA 61.057 55.000 12.81 0.00 42.88 4.12
2524 3396 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
2525 3397 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
2529 3401 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
2545 3417 6.628919 TGCGTAATAACTAGAGCACATCTA 57.371 37.500 0.00 0.00 39.64 1.98
2546 3418 5.515797 TGCGTAATAACTAGAGCACATCT 57.484 39.130 0.00 0.00 42.47 2.90
2547 3419 6.153067 AGATGCGTAATAACTAGAGCACATC 58.847 40.000 0.00 0.00 37.44 3.06
2548 3420 6.090483 AGATGCGTAATAACTAGAGCACAT 57.910 37.500 0.00 0.00 37.44 3.21
2549 3421 5.515797 AGATGCGTAATAACTAGAGCACA 57.484 39.130 0.00 0.00 37.44 4.57
2550 3422 7.113684 CACTTAGATGCGTAATAACTAGAGCAC 59.886 40.741 0.00 0.00 37.44 4.40
2551 3423 7.012989 TCACTTAGATGCGTAATAACTAGAGCA 59.987 37.037 0.00 0.00 39.02 4.26
2552 3424 7.361127 TCACTTAGATGCGTAATAACTAGAGC 58.639 38.462 0.00 0.00 0.00 4.09
2553 3425 8.561212 ACTCACTTAGATGCGTAATAACTAGAG 58.439 37.037 0.00 0.00 0.00 2.43
2554 3426 8.343366 CACTCACTTAGATGCGTAATAACTAGA 58.657 37.037 0.00 0.00 0.00 2.43
2555 3427 8.343366 TCACTCACTTAGATGCGTAATAACTAG 58.657 37.037 0.00 0.00 0.00 2.57
2556 3428 8.217131 TCACTCACTTAGATGCGTAATAACTA 57.783 34.615 0.00 0.00 0.00 2.24
2557 3429 7.096884 TCACTCACTTAGATGCGTAATAACT 57.903 36.000 0.00 0.00 0.00 2.24
2558 3430 7.751047 TTCACTCACTTAGATGCGTAATAAC 57.249 36.000 0.00 0.00 0.00 1.89
2559 3431 8.194769 TGATTCACTCACTTAGATGCGTAATAA 58.805 33.333 0.00 0.00 0.00 1.40
2560 3432 7.712797 TGATTCACTCACTTAGATGCGTAATA 58.287 34.615 0.00 0.00 0.00 0.98
2561 3433 6.573434 TGATTCACTCACTTAGATGCGTAAT 58.427 36.000 0.00 0.00 0.00 1.89
2562 3434 5.961272 TGATTCACTCACTTAGATGCGTAA 58.039 37.500 0.00 0.00 0.00 3.18
2563 3435 5.576447 TGATTCACTCACTTAGATGCGTA 57.424 39.130 0.00 0.00 0.00 4.42
2564 3436 4.456280 TGATTCACTCACTTAGATGCGT 57.544 40.909 0.00 0.00 0.00 5.24
2565 3437 4.318618 GCATGATTCACTCACTTAGATGCG 60.319 45.833 0.00 0.00 36.48 4.73
2566 3438 4.573607 TGCATGATTCACTCACTTAGATGC 59.426 41.667 0.00 0.00 36.48 3.91
2567 3439 6.862711 ATGCATGATTCACTCACTTAGATG 57.137 37.500 0.00 0.00 36.48 2.90
2568 3440 8.969260 TTTATGCATGATTCACTCACTTAGAT 57.031 30.769 10.16 0.00 36.48 1.98
2569 3441 8.791327 TTTTATGCATGATTCACTCACTTAGA 57.209 30.769 10.16 0.00 36.48 2.10
2570 3442 8.886719 TCTTTTATGCATGATTCACTCACTTAG 58.113 33.333 10.16 0.00 36.48 2.18
2571 3443 8.791327 TCTTTTATGCATGATTCACTCACTTA 57.209 30.769 10.16 0.00 36.48 2.24
2572 3444 7.148120 CCTCTTTTATGCATGATTCACTCACTT 60.148 37.037 10.16 0.00 36.48 3.16
2573 3445 6.318144 CCTCTTTTATGCATGATTCACTCACT 59.682 38.462 10.16 0.00 36.48 3.41
2574 3446 6.317140 TCCTCTTTTATGCATGATTCACTCAC 59.683 38.462 10.16 0.00 36.48 3.51
2575 3447 6.417258 TCCTCTTTTATGCATGATTCACTCA 58.583 36.000 10.16 0.00 38.53 3.41
2576 3448 6.932356 TCCTCTTTTATGCATGATTCACTC 57.068 37.500 10.16 0.00 0.00 3.51
2577 3449 7.707624 TTTCCTCTTTTATGCATGATTCACT 57.292 32.000 10.16 0.00 0.00 3.41
2578 3450 8.246180 TCTTTTCCTCTTTTATGCATGATTCAC 58.754 33.333 10.16 0.00 0.00 3.18
2579 3451 8.352137 TCTTTTCCTCTTTTATGCATGATTCA 57.648 30.769 10.16 0.00 0.00 2.57
2580 3452 9.643693 TTTCTTTTCCTCTTTTATGCATGATTC 57.356 29.630 10.16 0.00 0.00 2.52
2622 3494 9.685276 TGATCTTACATTGAAATTAGTGTGGAT 57.315 29.630 0.00 0.00 0.00 3.41
2623 3495 9.513906 TTGATCTTACATTGAAATTAGTGTGGA 57.486 29.630 0.00 0.00 0.00 4.02
2633 3505 9.904198 TCCTATGTCATTGATCTTACATTGAAA 57.096 29.630 0.00 0.00 34.54 2.69
2634 3506 9.330063 GTCCTATGTCATTGATCTTACATTGAA 57.670 33.333 0.00 0.00 34.54 2.69
2635 3507 8.708378 AGTCCTATGTCATTGATCTTACATTGA 58.292 33.333 0.00 0.00 34.54 2.57
2636 3508 8.899427 AGTCCTATGTCATTGATCTTACATTG 57.101 34.615 0.00 0.53 34.54 2.82
2639 3511 9.421399 TCTAAGTCCTATGTCATTGATCTTACA 57.579 33.333 0.00 0.00 0.00 2.41
2642 3514 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
2643 3515 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
2644 3516 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
2645 3517 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
2646 3518 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
2647 3519 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
2648 3520 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
2649 3521 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
2650 3522 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
2651 3523 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
2652 3524 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
2653 3525 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
2654 3526 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
2655 3527 9.143155 TCATAAGTATTGCACATCTAAGTCCTA 57.857 33.333 0.00 0.00 0.00 2.94
2656 3528 7.928706 GTCATAAGTATTGCACATCTAAGTCCT 59.071 37.037 0.00 0.00 0.00 3.85
2657 3529 7.710907 TGTCATAAGTATTGCACATCTAAGTCC 59.289 37.037 0.00 0.00 0.00 3.85
2658 3530 8.543774 GTGTCATAAGTATTGCACATCTAAGTC 58.456 37.037 0.00 0.00 0.00 3.01
2659 3531 8.040727 TGTGTCATAAGTATTGCACATCTAAGT 58.959 33.333 0.00 0.00 32.79 2.24
2660 3532 8.424274 TGTGTCATAAGTATTGCACATCTAAG 57.576 34.615 0.00 0.00 32.79 2.18
2661 3533 8.962884 ATGTGTCATAAGTATTGCACATCTAA 57.037 30.769 0.00 0.00 41.81 2.10
2665 3537 8.424133 TCTAGATGTGTCATAAGTATTGCACAT 58.576 33.333 13.21 13.21 46.19 3.21
2666 3538 7.781056 TCTAGATGTGTCATAAGTATTGCACA 58.219 34.615 0.00 0.00 40.42 4.57
2667 3539 8.706936 CATCTAGATGTGTCATAAGTATTGCAC 58.293 37.037 22.42 0.00 34.23 4.57
2668 3540 8.822652 CATCTAGATGTGTCATAAGTATTGCA 57.177 34.615 22.42 0.00 34.23 4.08
2700 3572 5.923684 TCGACAAAAGAAAAACAGTTTTGCT 59.076 32.000 13.00 13.00 42.42 3.91
2701 3573 6.147038 TCGACAAAAGAAAAACAGTTTTGC 57.853 33.333 12.13 10.32 42.42 3.68
2705 3577 9.083080 CCTTTTATCGACAAAAGAAAAACAGTT 57.917 29.630 26.38 0.00 44.68 3.16
2706 3578 7.704899 CCCTTTTATCGACAAAAGAAAAACAGT 59.295 33.333 26.38 0.00 44.68 3.55
2707 3579 7.704899 ACCCTTTTATCGACAAAAGAAAAACAG 59.295 33.333 26.38 10.37 44.68 3.16
2732 3604 3.623510 GTCAACCTAGCCTATGAAGCAAC 59.376 47.826 0.00 0.00 0.00 4.17
2739 3611 1.933853 GCAACGTCAACCTAGCCTATG 59.066 52.381 0.00 0.00 0.00 2.23
2796 3676 6.882656 TCTAATAATCAGCAGCAGAGAAAGT 58.117 36.000 0.00 0.00 0.00 2.66
2803 3683 6.482641 ACAACATCTCTAATAATCAGCAGCAG 59.517 38.462 0.00 0.00 0.00 4.24
2858 3738 6.926272 GGTCCTTAATAGCTATGTCTGTTCTG 59.074 42.308 7.09 0.00 0.00 3.02
2859 3739 6.611642 TGGTCCTTAATAGCTATGTCTGTTCT 59.388 38.462 7.09 0.00 0.00 3.01
2860 3740 6.702282 GTGGTCCTTAATAGCTATGTCTGTTC 59.298 42.308 7.09 0.00 0.00 3.18
2982 3862 2.987149 CAGGTGATGACACGTACTGAAC 59.013 50.000 0.00 0.00 46.77 3.18
2987 3867 1.068474 GTGCAGGTGATGACACGTAC 58.932 55.000 0.00 0.00 46.77 3.67
3116 3996 4.405548 TGGATCAATGGTTCATCACACAA 58.594 39.130 0.00 0.00 0.00 3.33
3117 3997 4.031636 TGGATCAATGGTTCATCACACA 57.968 40.909 0.00 0.00 0.00 3.72
3118 3998 5.345702 CATTGGATCAATGGTTCATCACAC 58.654 41.667 11.55 0.00 45.03 3.82
3203 4111 4.514577 CGCCACCGCCGAGAAGAT 62.515 66.667 0.00 0.00 0.00 2.40
3313 4221 4.514577 AGGATGCCGAACTCCGCG 62.515 66.667 0.00 0.00 36.62 6.46
3491 4399 6.767423 GCTGAGCTAAGTTACTAGTAGTAGGT 59.233 42.308 16.01 16.01 31.47 3.08
3535 4443 4.835927 GGACATCTCCGATGCGTT 57.164 55.556 3.88 0.00 0.00 4.84
3558 4466 5.190330 TCAGGTATACCATCTGCATGCATAT 59.810 40.000 22.97 17.23 38.89 1.78
3559 4467 4.531732 TCAGGTATACCATCTGCATGCATA 59.468 41.667 22.97 15.40 38.89 3.14
3638 4546 1.745489 GGATGGGCACGACAACTCC 60.745 63.158 0.00 0.00 0.00 3.85
3640 4548 0.038166 AATGGATGGGCACGACAACT 59.962 50.000 0.00 0.00 0.00 3.16
3641 4549 0.887933 AAATGGATGGGCACGACAAC 59.112 50.000 0.00 0.00 0.00 3.32
3646 4554 1.153588 GCCAAAATGGATGGGCACG 60.154 57.895 0.00 0.00 45.70 5.34
3650 4558 1.269012 ACAGTGCCAAAATGGATGGG 58.731 50.000 0.00 0.00 40.96 4.00
3652 4560 5.075858 ACATTACAGTGCCAAAATGGATG 57.924 39.130 0.00 0.00 40.96 3.51
3655 4563 4.864247 GCTAACATTACAGTGCCAAAATGG 59.136 41.667 10.84 0.00 41.55 3.16
3729 4637 6.270000 CCAAAGATGACCCATACATAGGAGTA 59.730 42.308 0.00 0.00 0.00 2.59
3732 4640 5.223655 TCCAAAGATGACCCATACATAGGA 58.776 41.667 0.00 0.00 0.00 2.94
3733 4641 5.555017 CTCCAAAGATGACCCATACATAGG 58.445 45.833 0.00 0.00 0.00 2.57
3734 4642 4.999950 GCTCCAAAGATGACCCATACATAG 59.000 45.833 0.00 0.00 0.00 2.23
3735 4643 4.660303 AGCTCCAAAGATGACCCATACATA 59.340 41.667 0.00 0.00 0.00 2.29
3736 4644 3.461085 AGCTCCAAAGATGACCCATACAT 59.539 43.478 0.00 0.00 0.00 2.29
3737 4645 2.846206 AGCTCCAAAGATGACCCATACA 59.154 45.455 0.00 0.00 0.00 2.29
3742 4650 4.133078 CAGATTAGCTCCAAAGATGACCC 58.867 47.826 0.00 0.00 0.00 4.46
3753 4661 3.205784 AGTTCATGCCAGATTAGCTCC 57.794 47.619 0.00 0.00 0.00 4.70
3754 4662 7.158021 AGTATTAGTTCATGCCAGATTAGCTC 58.842 38.462 0.00 0.00 0.00 4.09
3759 4667 6.933521 CAGCTAGTATTAGTTCATGCCAGATT 59.066 38.462 0.00 0.00 0.00 2.40
3762 4670 5.847304 TCAGCTAGTATTAGTTCATGCCAG 58.153 41.667 0.00 0.00 0.00 4.85
3842 4751 8.107591 GTCATTTGACATACAATTCCGAAATG 57.892 34.615 5.84 0.00 44.18 2.32
3914 4857 7.066284 CCTTCGTTCCAAAATAGATGACTCAAT 59.934 37.037 0.00 0.00 0.00 2.57
4079 5024 3.401033 TGAGAAAGATGCTTGACCGAA 57.599 42.857 0.00 0.00 0.00 4.30
4193 5139 7.072454 AGTTTATAGAGAAGTGCCCAATCCATA 59.928 37.037 0.00 0.00 0.00 2.74
4336 5282 8.947055 ACTTGTTTCACATTATTGAAGCTTTT 57.053 26.923 0.00 0.00 37.54 2.27
4340 5288 7.928908 TGAACTTGTTTCACATTATTGAAGC 57.071 32.000 0.00 0.00 39.45 3.86
4368 5316 6.840527 TCATAATTGATGGAGCCAGTATCAA 58.159 36.000 6.52 6.52 42.83 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.