Multiple sequence alignment - TraesCS7A01G384200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G384200 chr7A 100.000 5661 0 0 1558 7218 559397470 559391810 0.000000e+00 10455.0
1 TraesCS7A01G384200 chr7A 100.000 1149 0 0 1 1149 559399027 559397879 0.000000e+00 2122.0
2 TraesCS7A01G384200 chr7D 94.922 4982 189 35 1564 6505 493571549 493566592 0.000000e+00 7740.0
3 TraesCS7A01G384200 chr7D 95.285 615 26 3 537 1149 493572216 493571603 0.000000e+00 972.0
4 TraesCS7A01G384200 chr7D 88.447 528 18 9 6715 7218 493565861 493565353 1.340000e-166 597.0
5 TraesCS7A01G384200 chr7D 88.621 457 39 5 82 535 493659680 493659234 1.770000e-150 544.0
6 TraesCS7A01G384200 chr7D 93.333 90 6 0 1 90 41750026 41749937 4.540000e-27 134.0
7 TraesCS7A01G384200 chr7B 94.826 4117 160 27 1558 5657 522153118 522149038 0.000000e+00 6373.0
8 TraesCS7A01G384200 chr7B 93.720 621 25 7 531 1149 522153775 522153167 0.000000e+00 918.0
9 TraesCS7A01G384200 chr7B 83.144 878 76 37 5691 6505 522149038 522148170 0.000000e+00 736.0
10 TraesCS7A01G384200 chr7B 90.267 524 25 12 6715 7218 522147314 522146797 0.000000e+00 662.0
11 TraesCS7A01G384200 chr7B 88.816 456 37 8 82 535 522205461 522205018 1.370000e-151 547.0
12 TraesCS7A01G384200 chr2D 92.357 628 36 9 3216 3834 380416529 380417153 0.000000e+00 883.0
13 TraesCS7A01G384200 chr2D 90.610 639 48 7 3205 3834 249891785 249892420 0.000000e+00 837.0
14 TraesCS7A01G384200 chr2A 92.051 629 39 8 3215 3834 515951641 515952267 0.000000e+00 874.0
15 TraesCS7A01G384200 chr2A 89.833 659 58 6 3184 3834 90419665 90420322 0.000000e+00 837.0
16 TraesCS7A01G384200 chr2A 94.444 90 5 0 1 90 499775733 499775644 9.760000e-29 139.0
17 TraesCS7A01G384200 chr3A 90.967 631 48 5 3212 3834 375018260 375017631 0.000000e+00 841.0
18 TraesCS7A01G384200 chr3A 94.737 38 1 1 47 83 571405877 571405840 2.810000e-04 58.4
19 TraesCS7A01G384200 chr6A 90.358 643 54 5 3197 3831 410901498 410902140 0.000000e+00 837.0
20 TraesCS7A01G384200 chr5A 89.681 659 59 7 3184 3834 483276609 483275952 0.000000e+00 832.0
21 TraesCS7A01G384200 chr4D 98.780 82 1 0 1 82 481417453 481417534 5.840000e-31 147.0
22 TraesCS7A01G384200 chr1A 96.970 33 1 0 623 655 559036453 559036485 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G384200 chr7A 559391810 559399027 7217 True 6288.50 10455 100.000000 1 7218 2 chr7A.!!$R1 7217
1 TraesCS7A01G384200 chr7D 493565353 493572216 6863 True 3103.00 7740 92.884667 537 7218 3 chr7D.!!$R3 6681
2 TraesCS7A01G384200 chr7B 522146797 522153775 6978 True 2172.25 6373 90.489250 531 7218 4 chr7B.!!$R2 6687
3 TraesCS7A01G384200 chr2D 380416529 380417153 624 False 883.00 883 92.357000 3216 3834 1 chr2D.!!$F2 618
4 TraesCS7A01G384200 chr2D 249891785 249892420 635 False 837.00 837 90.610000 3205 3834 1 chr2D.!!$F1 629
5 TraesCS7A01G384200 chr2A 515951641 515952267 626 False 874.00 874 92.051000 3215 3834 1 chr2A.!!$F2 619
6 TraesCS7A01G384200 chr2A 90419665 90420322 657 False 837.00 837 89.833000 3184 3834 1 chr2A.!!$F1 650
7 TraesCS7A01G384200 chr3A 375017631 375018260 629 True 841.00 841 90.967000 3212 3834 1 chr3A.!!$R1 622
8 TraesCS7A01G384200 chr6A 410901498 410902140 642 False 837.00 837 90.358000 3197 3831 1 chr6A.!!$F1 634
9 TraesCS7A01G384200 chr5A 483275952 483276609 657 True 832.00 832 89.681000 3184 3834 1 chr5A.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.107508 GTGAGCTGCTCCTTGGCATA 60.108 55.000 25.61 2.54 41.63 3.14 F
809 812 0.400594 AACCTTACTGACAGGTGGGC 59.599 55.000 7.51 0.00 44.48 5.36 F
1743 1747 0.749454 GTGCAGGGATGCCGATTTCT 60.749 55.000 0.00 0.00 0.00 2.52 F
1970 1974 0.458669 TACGCTTCGATCCTTGGTCC 59.541 55.000 0.00 0.00 0.00 4.46 F
2960 2967 1.538849 GGAACAACTCCGGTTACGTGT 60.539 52.381 0.00 0.00 38.78 4.49 F
3941 3962 1.497991 TGTTACTGTCTTCTGTGCGC 58.502 50.000 0.00 0.00 0.00 6.09 F
5792 5828 1.164411 TGTGCTCCCATGCTAAAACG 58.836 50.000 0.00 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1747 1.473278 TCAATCTGCGCAAATGCATCA 59.527 42.857 13.05 2.07 45.26 3.07 R
1970 1974 3.803778 GCAATTGACTGAAACAAACCTGG 59.196 43.478 10.34 0.00 0.00 4.45 R
3697 3716 1.063114 AGGCAGGTTCTATAGGACGGT 60.063 52.381 5.05 0.00 0.00 4.83 R
3934 3955 4.818534 ATGTATTTTATCCTGCGCACAG 57.181 40.909 5.66 0.00 44.05 3.66 R
4419 4452 2.224606 AGCATGCCCAGAATATGAACG 58.775 47.619 15.66 0.00 0.00 3.95 R
5858 5923 0.391661 GGCCATGAGCGAGAAACAGA 60.392 55.000 0.00 0.00 45.17 3.41 R
6759 7616 0.034896 GAGCACTCCCTCCGTTTCAA 59.965 55.000 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.457496 CGGTCCTGTGCGCCAGAT 62.457 66.667 22.49 0.00 44.49 2.90
18 19 2.512515 GGTCCTGTGCGCCAGATC 60.513 66.667 22.49 15.33 44.49 2.75
19 20 2.887568 GTCCTGTGCGCCAGATCG 60.888 66.667 22.49 9.81 44.49 3.69
20 21 4.147449 TCCTGTGCGCCAGATCGG 62.147 66.667 22.49 10.37 44.49 4.18
21 22 4.147449 CCTGTGCGCCAGATCGGA 62.147 66.667 22.49 0.00 44.49 4.55
24 25 4.492160 GTGCGCCAGATCGGACGA 62.492 66.667 4.18 0.00 40.64 4.20
25 26 4.492160 TGCGCCAGATCGGACGAC 62.492 66.667 4.18 0.00 36.70 4.34
26 27 4.194720 GCGCCAGATCGGACGACT 62.195 66.667 5.65 0.00 36.70 4.18
27 28 2.024871 CGCCAGATCGGACGACTC 59.975 66.667 0.00 0.00 36.70 3.36
28 29 2.413765 GCCAGATCGGACGACTCC 59.586 66.667 7.64 0.00 36.56 3.85
29 30 3.121019 CCAGATCGGACGACTCCC 58.879 66.667 0.00 0.00 36.56 4.30
48 49 2.096799 CGAAGCGGATGATTTTCTGC 57.903 50.000 0.00 0.00 46.37 4.26
53 54 3.492421 GCGGATGATTTTCTGCAAAGA 57.508 42.857 0.54 0.00 45.51 2.52
54 55 4.037858 GCGGATGATTTTCTGCAAAGAT 57.962 40.909 0.54 0.00 45.51 2.40
55 56 4.040376 GCGGATGATTTTCTGCAAAGATC 58.960 43.478 0.54 0.00 45.51 2.75
56 57 4.439153 GCGGATGATTTTCTGCAAAGATCA 60.439 41.667 13.30 13.30 45.51 2.92
57 58 5.735354 GCGGATGATTTTCTGCAAAGATCAT 60.735 40.000 18.63 18.63 45.51 2.45
58 59 5.913514 CGGATGATTTTCTGCAAAGATCATC 59.086 40.000 26.05 26.05 40.50 2.92
59 60 6.214399 GGATGATTTTCTGCAAAGATCATCC 58.786 40.000 30.84 30.84 45.24 3.51
60 61 6.785337 ATGATTTTCTGCAAAGATCATCCA 57.215 33.333 15.49 0.00 31.28 3.41
61 62 6.203808 TGATTTTCTGCAAAGATCATCCAG 57.796 37.500 0.00 0.00 0.00 3.86
62 63 5.947566 TGATTTTCTGCAAAGATCATCCAGA 59.052 36.000 0.00 0.00 0.00 3.86
63 64 6.605995 TGATTTTCTGCAAAGATCATCCAGAT 59.394 34.615 0.00 0.00 40.48 2.90
64 65 5.830000 TTTCTGCAAAGATCATCCAGATG 57.170 39.130 0.98 0.98 37.00 2.90
76 77 5.363562 TCATCCAGATGATTTGTAGCAGT 57.636 39.130 6.24 0.00 42.42 4.40
77 78 5.121105 TCATCCAGATGATTTGTAGCAGTG 58.879 41.667 6.24 0.00 42.42 3.66
78 79 3.877559 TCCAGATGATTTGTAGCAGTGG 58.122 45.455 0.00 0.00 31.90 4.00
79 80 2.357009 CCAGATGATTTGTAGCAGTGGC 59.643 50.000 0.00 0.00 41.61 5.01
80 81 2.357009 CAGATGATTTGTAGCAGTGGCC 59.643 50.000 0.00 0.00 42.56 5.36
81 82 2.240667 AGATGATTTGTAGCAGTGGCCT 59.759 45.455 3.32 0.00 42.56 5.19
82 83 2.584835 TGATTTGTAGCAGTGGCCTT 57.415 45.000 3.32 0.00 42.56 4.35
83 84 2.875296 TGATTTGTAGCAGTGGCCTTT 58.125 42.857 3.32 0.00 42.56 3.11
84 85 3.230134 TGATTTGTAGCAGTGGCCTTTT 58.770 40.909 3.32 0.00 42.56 2.27
85 86 4.402829 TGATTTGTAGCAGTGGCCTTTTA 58.597 39.130 3.32 0.00 42.56 1.52
86 87 4.830046 TGATTTGTAGCAGTGGCCTTTTAA 59.170 37.500 3.32 0.00 42.56 1.52
87 88 4.846779 TTTGTAGCAGTGGCCTTTTAAG 57.153 40.909 3.32 0.00 42.56 1.85
88 89 3.780804 TGTAGCAGTGGCCTTTTAAGA 57.219 42.857 3.32 0.00 42.56 2.10
89 90 4.093472 TGTAGCAGTGGCCTTTTAAGAA 57.907 40.909 3.32 0.00 42.56 2.52
90 91 4.662278 TGTAGCAGTGGCCTTTTAAGAAT 58.338 39.130 3.32 0.00 42.56 2.40
91 92 5.811190 TGTAGCAGTGGCCTTTTAAGAATA 58.189 37.500 3.32 0.00 42.56 1.75
92 93 5.880332 TGTAGCAGTGGCCTTTTAAGAATAG 59.120 40.000 3.32 0.00 42.56 1.73
93 94 4.923415 AGCAGTGGCCTTTTAAGAATAGT 58.077 39.130 3.32 0.00 42.56 2.12
94 95 6.062258 AGCAGTGGCCTTTTAAGAATAGTA 57.938 37.500 3.32 0.00 42.56 1.82
95 96 6.663734 AGCAGTGGCCTTTTAAGAATAGTAT 58.336 36.000 3.32 0.00 42.56 2.12
96 97 7.802117 AGCAGTGGCCTTTTAAGAATAGTATA 58.198 34.615 3.32 0.00 42.56 1.47
97 98 8.440771 AGCAGTGGCCTTTTAAGAATAGTATAT 58.559 33.333 3.32 0.00 42.56 0.86
98 99 8.722394 GCAGTGGCCTTTTAAGAATAGTATATC 58.278 37.037 3.32 0.00 0.00 1.63
101 102 9.998106 GTGGCCTTTTAAGAATAGTATATCTCA 57.002 33.333 3.32 0.00 0.00 3.27
122 123 9.678260 ATCTCATCAAGTATAAAAGCAAGAAGT 57.322 29.630 0.00 0.00 0.00 3.01
123 124 9.155975 TCTCATCAAGTATAAAAGCAAGAAGTC 57.844 33.333 0.00 0.00 0.00 3.01
124 125 8.846943 TCATCAAGTATAAAAGCAAGAAGTCA 57.153 30.769 0.00 0.00 0.00 3.41
125 126 9.283768 TCATCAAGTATAAAAGCAAGAAGTCAA 57.716 29.630 0.00 0.00 0.00 3.18
126 127 9.897744 CATCAAGTATAAAAGCAAGAAGTCAAA 57.102 29.630 0.00 0.00 0.00 2.69
128 129 9.730420 TCAAGTATAAAAGCAAGAAGTCAAAAC 57.270 29.630 0.00 0.00 0.00 2.43
129 130 9.515020 CAAGTATAAAAGCAAGAAGTCAAAACA 57.485 29.630 0.00 0.00 0.00 2.83
134 135 7.961325 AAAAGCAAGAAGTCAAAACAAAAGA 57.039 28.000 0.00 0.00 0.00 2.52
135 136 7.961325 AAAGCAAGAAGTCAAAACAAAAGAA 57.039 28.000 0.00 0.00 0.00 2.52
136 137 7.961325 AAGCAAGAAGTCAAAACAAAAGAAA 57.039 28.000 0.00 0.00 0.00 2.52
137 138 7.961325 AGCAAGAAGTCAAAACAAAAGAAAA 57.039 28.000 0.00 0.00 0.00 2.29
138 139 8.552083 AGCAAGAAGTCAAAACAAAAGAAAAT 57.448 26.923 0.00 0.00 0.00 1.82
139 140 9.002600 AGCAAGAAGTCAAAACAAAAGAAAATT 57.997 25.926 0.00 0.00 0.00 1.82
155 156 9.862585 AAAAGAAAATTAAAACATTGACATCGC 57.137 25.926 0.00 0.00 0.00 4.58
156 157 8.586570 AAGAAAATTAAAACATTGACATCGCA 57.413 26.923 0.00 0.00 0.00 5.10
157 158 8.006741 AGAAAATTAAAACATTGACATCGCAC 57.993 30.769 0.00 0.00 0.00 5.34
158 159 6.704512 AAATTAAAACATTGACATCGCACC 57.295 33.333 0.00 0.00 0.00 5.01
159 160 2.723124 AAAACATTGACATCGCACCC 57.277 45.000 0.00 0.00 0.00 4.61
160 161 1.614996 AAACATTGACATCGCACCCA 58.385 45.000 0.00 0.00 0.00 4.51
161 162 1.614996 AACATTGACATCGCACCCAA 58.385 45.000 0.00 0.00 0.00 4.12
162 163 1.614996 ACATTGACATCGCACCCAAA 58.385 45.000 0.00 0.00 0.00 3.28
163 164 1.959985 ACATTGACATCGCACCCAAAA 59.040 42.857 0.00 0.00 0.00 2.44
164 165 2.363680 ACATTGACATCGCACCCAAAAA 59.636 40.909 0.00 0.00 0.00 1.94
165 166 2.500509 TTGACATCGCACCCAAAAAC 57.499 45.000 0.00 0.00 0.00 2.43
166 167 1.686355 TGACATCGCACCCAAAAACT 58.314 45.000 0.00 0.00 0.00 2.66
167 168 2.028130 TGACATCGCACCCAAAAACTT 58.972 42.857 0.00 0.00 0.00 2.66
168 169 2.223688 TGACATCGCACCCAAAAACTTG 60.224 45.455 0.00 0.00 0.00 3.16
169 170 2.028130 ACATCGCACCCAAAAACTTGA 58.972 42.857 0.00 0.00 0.00 3.02
170 171 2.428890 ACATCGCACCCAAAAACTTGAA 59.571 40.909 0.00 0.00 0.00 2.69
171 172 3.118956 ACATCGCACCCAAAAACTTGAAA 60.119 39.130 0.00 0.00 0.00 2.69
172 173 3.594603 TCGCACCCAAAAACTTGAAAA 57.405 38.095 0.00 0.00 0.00 2.29
173 174 3.926616 TCGCACCCAAAAACTTGAAAAA 58.073 36.364 0.00 0.00 0.00 1.94
192 193 2.296073 AAAAACCCCGTAAGATGGCA 57.704 45.000 0.00 0.00 43.02 4.92
193 194 1.541379 AAAACCCCGTAAGATGGCAC 58.459 50.000 0.00 0.00 43.02 5.01
209 210 2.941720 TGGCACAAAAACTTTGATTGGC 59.058 40.909 6.15 7.51 31.92 4.52
210 211 2.941720 GGCACAAAAACTTTGATTGGCA 59.058 40.909 6.15 0.00 0.00 4.92
211 212 3.242706 GGCACAAAAACTTTGATTGGCAC 60.243 43.478 6.15 0.00 0.00 5.01
212 213 3.373439 GCACAAAAACTTTGATTGGCACA 59.627 39.130 6.15 0.00 0.00 4.57
213 214 4.727448 GCACAAAAACTTTGATTGGCACAC 60.727 41.667 6.15 0.00 39.29 3.82
214 215 3.938334 ACAAAAACTTTGATTGGCACACC 59.062 39.130 6.15 0.00 39.29 4.16
227 228 4.592485 TGGCACACCATAAAAACGAAAT 57.408 36.364 0.00 0.00 42.67 2.17
228 229 4.551388 TGGCACACCATAAAAACGAAATC 58.449 39.130 0.00 0.00 42.67 2.17
229 230 3.924073 GGCACACCATAAAAACGAAATCC 59.076 43.478 0.00 0.00 35.26 3.01
230 231 4.321675 GGCACACCATAAAAACGAAATCCT 60.322 41.667 0.00 0.00 35.26 3.24
231 232 5.227152 GCACACCATAAAAACGAAATCCTT 58.773 37.500 0.00 0.00 0.00 3.36
232 233 5.694458 GCACACCATAAAAACGAAATCCTTT 59.306 36.000 0.00 0.00 0.00 3.11
233 234 6.201997 GCACACCATAAAAACGAAATCCTTTT 59.798 34.615 0.00 0.00 0.00 2.27
234 235 7.382759 GCACACCATAAAAACGAAATCCTTTTA 59.617 33.333 0.00 0.00 0.00 1.52
235 236 9.418045 CACACCATAAAAACGAAATCCTTTTAT 57.582 29.630 0.00 0.00 36.25 1.40
236 237 9.634163 ACACCATAAAAACGAAATCCTTTTATC 57.366 29.630 0.00 0.00 34.53 1.75
237 238 9.632807 CACCATAAAAACGAAATCCTTTTATCA 57.367 29.630 0.00 0.00 34.53 2.15
253 254 9.594936 TCCTTTTATCATTTTCTTAACCCTTGA 57.405 29.630 0.00 0.00 0.00 3.02
259 260 7.049799 TCATTTTCTTAACCCTTGAACTTGG 57.950 36.000 0.00 0.00 0.00 3.61
260 261 4.929819 TTTCTTAACCCTTGAACTTGGC 57.070 40.909 0.00 0.00 0.00 4.52
261 262 3.876309 TCTTAACCCTTGAACTTGGCT 57.124 42.857 0.00 0.00 0.00 4.75
262 263 4.178956 TCTTAACCCTTGAACTTGGCTT 57.821 40.909 0.00 0.00 0.00 4.35
263 264 4.542697 TCTTAACCCTTGAACTTGGCTTT 58.457 39.130 0.00 0.00 0.00 3.51
264 265 4.340950 TCTTAACCCTTGAACTTGGCTTTG 59.659 41.667 0.00 0.00 0.00 2.77
265 266 2.452600 ACCCTTGAACTTGGCTTTGA 57.547 45.000 0.00 0.00 0.00 2.69
266 267 2.962859 ACCCTTGAACTTGGCTTTGAT 58.037 42.857 0.00 0.00 0.00 2.57
267 268 3.308401 ACCCTTGAACTTGGCTTTGATT 58.692 40.909 0.00 0.00 0.00 2.57
268 269 3.070015 ACCCTTGAACTTGGCTTTGATTG 59.930 43.478 0.00 0.00 0.00 2.67
269 270 3.070015 CCCTTGAACTTGGCTTTGATTGT 59.930 43.478 0.00 0.00 0.00 2.71
270 271 4.443315 CCCTTGAACTTGGCTTTGATTGTT 60.443 41.667 0.00 0.00 0.00 2.83
271 272 4.508861 CCTTGAACTTGGCTTTGATTGTTG 59.491 41.667 0.00 0.00 0.00 3.33
272 273 4.998671 TGAACTTGGCTTTGATTGTTGA 57.001 36.364 0.00 0.00 0.00 3.18
273 274 5.336150 TGAACTTGGCTTTGATTGTTGAA 57.664 34.783 0.00 0.00 0.00 2.69
274 275 5.108517 TGAACTTGGCTTTGATTGTTGAAC 58.891 37.500 0.00 0.00 0.00 3.18
275 276 4.734398 ACTTGGCTTTGATTGTTGAACA 57.266 36.364 0.00 0.00 0.00 3.18
276 277 4.432712 ACTTGGCTTTGATTGTTGAACAC 58.567 39.130 0.00 0.00 0.00 3.32
277 278 4.081752 ACTTGGCTTTGATTGTTGAACACA 60.082 37.500 0.00 0.00 0.00 3.72
291 292 8.958175 TTGTTGAACACAATCGGATTTTATAC 57.042 30.769 0.00 0.00 40.71 1.47
292 293 8.100508 TGTTGAACACAATCGGATTTTATACA 57.899 30.769 0.00 0.00 29.87 2.29
293 294 8.735315 TGTTGAACACAATCGGATTTTATACAT 58.265 29.630 0.00 0.00 29.87 2.29
294 295 9.009327 GTTGAACACAATCGGATTTTATACATG 57.991 33.333 0.00 0.00 0.00 3.21
295 296 7.192913 TGAACACAATCGGATTTTATACATGC 58.807 34.615 0.00 0.00 0.00 4.06
296 297 6.942532 ACACAATCGGATTTTATACATGCT 57.057 33.333 0.00 0.00 0.00 3.79
297 298 7.333528 ACACAATCGGATTTTATACATGCTT 57.666 32.000 0.00 0.00 0.00 3.91
298 299 7.195646 ACACAATCGGATTTTATACATGCTTG 58.804 34.615 0.00 0.00 0.00 4.01
299 300 7.148086 ACACAATCGGATTTTATACATGCTTGT 60.148 33.333 10.40 10.40 39.98 3.16
300 301 8.341903 CACAATCGGATTTTATACATGCTTGTA 58.658 33.333 14.16 14.16 42.35 2.41
301 302 8.898761 ACAATCGGATTTTATACATGCTTGTAA 58.101 29.630 15.56 2.71 41.51 2.41
302 303 9.729023 CAATCGGATTTTATACATGCTTGTAAA 57.271 29.630 15.56 8.68 41.51 2.01
303 304 9.730420 AATCGGATTTTATACATGCTTGTAAAC 57.270 29.630 15.56 1.51 41.51 2.01
304 305 8.500753 TCGGATTTTATACATGCTTGTAAACT 57.499 30.769 15.56 4.04 41.51 2.66
305 306 8.952278 TCGGATTTTATACATGCTTGTAAACTT 58.048 29.630 15.56 3.18 41.51 2.66
306 307 9.009327 CGGATTTTATACATGCTTGTAAACTTG 57.991 33.333 15.56 0.06 41.51 3.16
307 308 9.855021 GGATTTTATACATGCTTGTAAACTTGT 57.145 29.630 15.56 2.19 41.51 3.16
310 311 9.891828 TTTTATACATGCTTGTAAACTTGTGAG 57.108 29.630 15.56 0.00 41.51 3.51
311 312 4.228912 ACATGCTTGTAAACTTGTGAGC 57.771 40.909 2.92 0.00 33.16 4.26
312 313 3.885297 ACATGCTTGTAAACTTGTGAGCT 59.115 39.130 2.92 0.00 33.16 4.09
313 314 3.969117 TGCTTGTAAACTTGTGAGCTG 57.031 42.857 0.00 0.00 0.00 4.24
314 315 2.033299 TGCTTGTAAACTTGTGAGCTGC 59.967 45.455 0.00 0.00 0.00 5.25
315 316 2.291741 GCTTGTAAACTTGTGAGCTGCT 59.708 45.455 0.00 0.00 0.00 4.24
316 317 3.608008 GCTTGTAAACTTGTGAGCTGCTC 60.608 47.826 22.38 22.38 0.00 4.26
317 318 2.494059 TGTAAACTTGTGAGCTGCTCC 58.506 47.619 25.61 17.15 0.00 4.70
318 319 2.104792 TGTAAACTTGTGAGCTGCTCCT 59.895 45.455 25.61 5.30 0.00 3.69
319 320 2.355010 AAACTTGTGAGCTGCTCCTT 57.645 45.000 25.61 7.37 0.00 3.36
320 321 1.602311 AACTTGTGAGCTGCTCCTTG 58.398 50.000 25.61 15.26 0.00 3.61
321 322 0.250640 ACTTGTGAGCTGCTCCTTGG 60.251 55.000 25.61 15.52 0.00 3.61
322 323 1.584380 CTTGTGAGCTGCTCCTTGGC 61.584 60.000 25.61 11.60 0.00 4.52
323 324 2.033141 GTGAGCTGCTCCTTGGCA 59.967 61.111 25.61 4.76 40.15 4.92
324 325 1.378250 GTGAGCTGCTCCTTGGCAT 60.378 57.895 25.61 0.00 41.63 4.40
325 326 0.107508 GTGAGCTGCTCCTTGGCATA 60.108 55.000 25.61 2.54 41.63 3.14
326 327 0.841961 TGAGCTGCTCCTTGGCATAT 59.158 50.000 25.61 0.00 41.63 1.78
327 328 2.049372 TGAGCTGCTCCTTGGCATATA 58.951 47.619 25.61 1.03 41.63 0.86
328 329 2.439135 TGAGCTGCTCCTTGGCATATAA 59.561 45.455 25.61 0.49 41.63 0.98
329 330 3.072944 GAGCTGCTCCTTGGCATATAAG 58.927 50.000 18.80 0.00 41.63 1.73
330 331 2.707791 AGCTGCTCCTTGGCATATAAGA 59.292 45.455 0.00 0.00 41.63 2.10
331 332 3.072944 GCTGCTCCTTGGCATATAAGAG 58.927 50.000 0.00 0.00 41.63 2.85
332 333 3.244353 GCTGCTCCTTGGCATATAAGAGA 60.244 47.826 0.00 0.00 41.63 3.10
333 334 4.744867 GCTGCTCCTTGGCATATAAGAGAA 60.745 45.833 0.00 0.00 41.63 2.87
334 335 5.371526 CTGCTCCTTGGCATATAAGAGAAA 58.628 41.667 0.00 0.00 41.63 2.52
335 336 5.754782 TGCTCCTTGGCATATAAGAGAAAA 58.245 37.500 0.00 0.00 37.29 2.29
336 337 6.186957 TGCTCCTTGGCATATAAGAGAAAAA 58.813 36.000 0.00 0.00 37.29 1.94
337 338 6.319658 TGCTCCTTGGCATATAAGAGAAAAAG 59.680 38.462 0.00 0.00 37.29 2.27
338 339 6.543831 GCTCCTTGGCATATAAGAGAAAAAGA 59.456 38.462 0.00 0.00 0.00 2.52
339 340 7.067494 GCTCCTTGGCATATAAGAGAAAAAGAA 59.933 37.037 0.00 0.00 0.00 2.52
340 341 8.877864 TCCTTGGCATATAAGAGAAAAAGAAA 57.122 30.769 0.00 0.00 0.00 2.52
341 342 8.960591 TCCTTGGCATATAAGAGAAAAAGAAAG 58.039 33.333 0.00 0.00 0.00 2.62
342 343 8.193438 CCTTGGCATATAAGAGAAAAAGAAAGG 58.807 37.037 0.00 0.00 0.00 3.11
343 344 8.877864 TTGGCATATAAGAGAAAAAGAAAGGA 57.122 30.769 0.00 0.00 0.00 3.36
344 345 8.281212 TGGCATATAAGAGAAAAAGAAAGGAC 57.719 34.615 0.00 0.00 0.00 3.85
345 346 7.888021 TGGCATATAAGAGAAAAAGAAAGGACA 59.112 33.333 0.00 0.00 0.00 4.02
346 347 8.184848 GGCATATAAGAGAAAAAGAAAGGACAC 58.815 37.037 0.00 0.00 0.00 3.67
347 348 8.730680 GCATATAAGAGAAAAAGAAAGGACACA 58.269 33.333 0.00 0.00 0.00 3.72
351 352 7.468141 AAGAGAAAAAGAAAGGACACAAAGT 57.532 32.000 0.00 0.00 0.00 2.66
352 353 7.468141 AGAGAAAAAGAAAGGACACAAAGTT 57.532 32.000 0.00 0.00 0.00 2.66
353 354 7.896811 AGAGAAAAAGAAAGGACACAAAGTTT 58.103 30.769 0.00 0.00 0.00 2.66
354 355 8.367911 AGAGAAAAAGAAAGGACACAAAGTTTT 58.632 29.630 0.00 0.00 0.00 2.43
355 356 8.902540 AGAAAAAGAAAGGACACAAAGTTTTT 57.097 26.923 0.00 0.00 0.00 1.94
356 357 9.990360 AGAAAAAGAAAGGACACAAAGTTTTTA 57.010 25.926 0.00 0.00 0.00 1.52
360 361 8.942338 AAGAAAGGACACAAAGTTTTTAATCC 57.058 30.769 0.00 0.00 0.00 3.01
361 362 7.200455 AGAAAGGACACAAAGTTTTTAATCCG 58.800 34.615 0.00 0.00 0.00 4.18
362 363 6.702716 AAGGACACAAAGTTTTTAATCCGA 57.297 33.333 0.00 0.00 0.00 4.55
363 364 6.313744 AGGACACAAAGTTTTTAATCCGAG 57.686 37.500 0.00 0.00 0.00 4.63
364 365 4.915667 GGACACAAAGTTTTTAATCCGAGC 59.084 41.667 0.00 0.00 0.00 5.03
365 366 5.278315 GGACACAAAGTTTTTAATCCGAGCT 60.278 40.000 0.00 0.00 0.00 4.09
366 367 5.758924 ACACAAAGTTTTTAATCCGAGCTC 58.241 37.500 2.73 2.73 0.00 4.09
367 368 5.298276 ACACAAAGTTTTTAATCCGAGCTCA 59.702 36.000 15.40 0.00 0.00 4.26
368 369 6.016276 ACACAAAGTTTTTAATCCGAGCTCAT 60.016 34.615 15.40 0.00 0.00 2.90
369 370 7.174253 ACACAAAGTTTTTAATCCGAGCTCATA 59.826 33.333 15.40 0.29 0.00 2.15
370 371 8.184192 CACAAAGTTTTTAATCCGAGCTCATAT 58.816 33.333 15.40 3.06 0.00 1.78
371 372 8.184192 ACAAAGTTTTTAATCCGAGCTCATATG 58.816 33.333 15.40 0.00 0.00 1.78
372 373 6.305693 AGTTTTTAATCCGAGCTCATATGC 57.694 37.500 15.40 0.00 0.00 3.14
373 374 5.822519 AGTTTTTAATCCGAGCTCATATGCA 59.177 36.000 15.40 0.00 34.99 3.96
374 375 5.673337 TTTTAATCCGAGCTCATATGCAC 57.327 39.130 15.40 0.00 34.99 4.57
375 376 2.916702 AATCCGAGCTCATATGCACA 57.083 45.000 15.40 0.00 34.99 4.57
376 377 2.160822 ATCCGAGCTCATATGCACAC 57.839 50.000 15.40 0.00 34.99 3.82
377 378 1.114627 TCCGAGCTCATATGCACACT 58.885 50.000 15.40 0.00 34.99 3.55
378 379 1.202452 TCCGAGCTCATATGCACACTG 60.202 52.381 15.40 0.00 34.99 3.66
379 380 1.202452 CCGAGCTCATATGCACACTGA 60.202 52.381 15.40 0.00 34.99 3.41
380 381 2.547430 CCGAGCTCATATGCACACTGAT 60.547 50.000 15.40 0.00 34.99 2.90
381 382 3.129109 CGAGCTCATATGCACACTGATT 58.871 45.455 15.40 0.00 34.99 2.57
382 383 4.301628 CGAGCTCATATGCACACTGATTA 58.698 43.478 15.40 0.00 34.99 1.75
383 384 4.385146 CGAGCTCATATGCACACTGATTAG 59.615 45.833 15.40 0.00 34.99 1.73
384 385 4.063689 AGCTCATATGCACACTGATTAGC 58.936 43.478 0.00 0.00 34.99 3.09
385 386 3.811497 GCTCATATGCACACTGATTAGCA 59.189 43.478 0.00 0.00 41.73 3.49
386 387 6.254776 AGCTCATATGCACACTGATTAGCAG 61.255 44.000 0.00 0.00 40.71 4.24
387 388 8.585864 AGCTCATATGCACACTGATTAGCAGT 62.586 42.308 0.00 0.00 46.43 4.40
388 389 9.303502 AGCTCATATGCACACTGATTAGCAGTA 62.304 40.741 1.83 0.00 44.97 2.74
463 464 9.903682 ATAAGCACTGATAAATTTATCACATGC 57.096 29.630 34.98 34.98 45.91 4.06
466 467 8.057812 GCACTGATAAATTTATCACATGCTTG 57.942 34.615 34.81 26.13 44.32 4.01
467 468 7.703621 GCACTGATAAATTTATCACATGCTTGT 59.296 33.333 34.81 26.55 44.32 3.16
468 469 9.229784 CACTGATAAATTTATCACATGCTTGTC 57.770 33.333 28.93 8.07 43.25 3.18
469 470 8.959548 ACTGATAAATTTATCACATGCTTGTCA 58.040 29.630 28.93 11.57 43.25 3.58
470 471 9.791820 CTGATAAATTTATCACATGCTTGTCAA 57.208 29.630 28.93 10.12 43.25 3.18
475 476 7.837202 ATTTATCACATGCTTGTCAATTTGG 57.163 32.000 1.56 0.00 32.34 3.28
476 477 4.877378 ATCACATGCTTGTCAATTTGGT 57.123 36.364 1.56 0.00 32.34 3.67
477 478 3.979948 TCACATGCTTGTCAATTTGGTG 58.020 40.909 1.56 0.00 32.34 4.17
478 479 3.635836 TCACATGCTTGTCAATTTGGTGA 59.364 39.130 1.56 0.00 32.34 4.02
479 480 3.737266 CACATGCTTGTCAATTTGGTGAC 59.263 43.478 1.56 0.00 46.74 3.67
495 496 5.850557 TGGTGACAAAGTGACATTTCAAT 57.149 34.783 0.00 0.00 37.44 2.57
496 497 6.219417 TGGTGACAAAGTGACATTTCAATT 57.781 33.333 0.00 0.00 41.78 2.32
498 499 7.102346 TGGTGACAAAGTGACATTTCAATTTT 58.898 30.769 4.63 0.00 45.44 1.82
499 500 7.064371 TGGTGACAAAGTGACATTTCAATTTTG 59.936 33.333 4.63 10.35 45.44 2.44
500 501 7.401080 GTGACAAAGTGACATTTCAATTTTGG 58.599 34.615 17.49 7.42 45.44 3.28
501 502 7.277539 GTGACAAAGTGACATTTCAATTTTGGA 59.722 33.333 17.49 7.16 45.44 3.53
502 503 7.492020 TGACAAAGTGACATTTCAATTTTGGAG 59.508 33.333 17.49 6.65 45.44 3.86
503 504 6.258507 ACAAAGTGACATTTCAATTTTGGAGC 59.741 34.615 17.49 0.00 45.44 4.70
504 505 5.534207 AGTGACATTTCAATTTTGGAGCA 57.466 34.783 0.00 0.00 31.90 4.26
505 506 6.105397 AGTGACATTTCAATTTTGGAGCAT 57.895 33.333 0.00 0.00 31.90 3.79
506 507 6.161381 AGTGACATTTCAATTTTGGAGCATC 58.839 36.000 0.00 0.00 31.90 3.91
507 508 5.061311 GTGACATTTCAATTTTGGAGCATCG 59.939 40.000 0.00 0.00 30.71 3.84
508 509 5.048154 TGACATTTCAATTTTGGAGCATCGA 60.048 36.000 0.00 0.00 34.37 3.59
509 510 5.969423 ACATTTCAATTTTGGAGCATCGAT 58.031 33.333 0.00 0.00 34.37 3.59
510 511 6.400568 ACATTTCAATTTTGGAGCATCGATT 58.599 32.000 0.00 0.00 34.37 3.34
511 512 6.875195 ACATTTCAATTTTGGAGCATCGATTT 59.125 30.769 0.00 0.00 34.37 2.17
512 513 7.388500 ACATTTCAATTTTGGAGCATCGATTTT 59.612 29.630 0.00 0.00 34.37 1.82
513 514 6.949578 TTCAATTTTGGAGCATCGATTTTC 57.050 33.333 0.00 0.00 34.37 2.29
514 515 6.271488 TCAATTTTGGAGCATCGATTTTCT 57.729 33.333 0.00 0.00 34.37 2.52
515 516 6.690530 TCAATTTTGGAGCATCGATTTTCTT 58.309 32.000 0.00 0.00 34.37 2.52
516 517 7.825681 TCAATTTTGGAGCATCGATTTTCTTA 58.174 30.769 0.00 0.00 34.37 2.10
517 518 8.469200 TCAATTTTGGAGCATCGATTTTCTTAT 58.531 29.630 0.00 0.00 34.37 1.73
518 519 9.090692 CAATTTTGGAGCATCGATTTTCTTATT 57.909 29.630 0.00 0.00 34.37 1.40
519 520 9.657419 AATTTTGGAGCATCGATTTTCTTATTT 57.343 25.926 0.00 0.00 34.37 1.40
520 521 9.657419 ATTTTGGAGCATCGATTTTCTTATTTT 57.343 25.926 0.00 0.00 34.37 1.82
521 522 9.487790 TTTTGGAGCATCGATTTTCTTATTTTT 57.512 25.926 0.00 0.00 34.37 1.94
593 595 8.905702 GGTCAAATATTCATCAATGTTTATCGC 58.094 33.333 0.00 0.00 33.01 4.58
594 596 8.621487 GTCAAATATTCATCAATGTTTATCGCG 58.379 33.333 0.00 0.00 33.01 5.87
599 601 9.897744 ATATTCATCAATGTTTATCGCGAAAAT 57.102 25.926 15.24 0.00 0.00 1.82
610 612 9.996879 TGTTTATCGCGAAAATAATTCAAAAAC 57.003 25.926 15.24 3.74 0.00 2.43
611 613 9.996879 GTTTATCGCGAAAATAATTCAAAAACA 57.003 25.926 15.24 0.00 0.00 2.83
678 680 2.984562 TGCATGTGAGCTCGGAATTAA 58.015 42.857 9.64 0.00 34.99 1.40
681 683 4.217334 TGCATGTGAGCTCGGAATTAAAAA 59.783 37.500 9.64 0.00 34.99 1.94
706 709 4.109766 CGCTTTCGAAAAAGAAAACCCTT 58.890 39.130 12.41 0.00 43.90 3.95
710 713 2.683867 TCGAAAAAGAAAACCCTTGCGA 59.316 40.909 0.00 0.00 0.00 5.10
745 748 3.090312 CGTGATAAAACGTGAGCACAG 57.910 47.619 12.43 3.99 38.74 3.66
809 812 0.400594 AACCTTACTGACAGGTGGGC 59.599 55.000 7.51 0.00 44.48 5.36
1743 1747 0.749454 GTGCAGGGATGCCGATTTCT 60.749 55.000 0.00 0.00 0.00 2.52
1866 1870 3.578282 CCAGAGCCACCAAATTAACCTTT 59.422 43.478 0.00 0.00 0.00 3.11
1970 1974 0.458669 TACGCTTCGATCCTTGGTCC 59.541 55.000 0.00 0.00 0.00 4.46
1988 1992 3.020984 GTCCCAGGTTTGTTTCAGTCAA 58.979 45.455 0.00 0.00 0.00 3.18
1989 1993 3.636764 GTCCCAGGTTTGTTTCAGTCAAT 59.363 43.478 0.00 0.00 0.00 2.57
1997 2001 4.998671 TTGTTTCAGTCAATTGCTTGGA 57.001 36.364 0.00 0.00 32.95 3.53
2054 2058 6.093404 TCGTTGATCTCACTTGTACTGAATC 58.907 40.000 0.00 0.00 0.00 2.52
2214 2219 9.109533 GTTATTTGAATTCTGCAGCAAAATTTG 57.890 29.630 17.43 0.57 34.38 2.32
2254 2259 9.550811 GTATAAAAACCTGTACATACTTTGCAC 57.449 33.333 0.00 0.00 0.00 4.57
2733 2740 1.851304 TCCATGTTCCATTTCCTGGC 58.149 50.000 0.00 0.00 45.52 4.85
2839 2846 1.756538 CAATGGGGAAGGTATGTTGCC 59.243 52.381 0.00 0.00 37.20 4.52
2960 2967 1.538849 GGAACAACTCCGGTTACGTGT 60.539 52.381 0.00 0.00 38.78 4.49
3139 3146 6.899393 ATTAATCCTGTGAAAACTGCAGAA 57.101 33.333 23.35 0.00 32.39 3.02
3226 3233 2.029470 ACCACCACAACAACAACAACAG 60.029 45.455 0.00 0.00 0.00 3.16
3247 3254 2.628178 GCAAAGCCTTAAGTCCCAAACT 59.372 45.455 0.97 0.00 41.10 2.66
3249 3256 4.462834 GCAAAGCCTTAAGTCCCAAACTAT 59.537 41.667 0.97 0.00 37.17 2.12
3307 3315 2.174334 CCAACTCATGGTTCTGGCG 58.826 57.895 0.00 0.00 44.85 5.69
3480 3498 2.932194 AGCTTCTGGAGGCCTGCA 60.932 61.111 26.78 26.78 33.44 4.41
3567 3585 8.937835 CCCAACCCTATCACATATATCATCATA 58.062 37.037 0.00 0.00 0.00 2.15
3576 3594 5.363868 CACATATATCATCATACCGGACCCT 59.636 44.000 9.46 0.00 0.00 4.34
3598 3616 1.973281 CTTCCTTGCGTGGCCACAT 60.973 57.895 34.16 0.00 0.00 3.21
3697 3716 5.336610 CCATACAACATTGCAGGTCAAATCA 60.337 40.000 0.00 0.00 38.34 2.57
3934 3955 6.128200 TGTCATGCATCATTGTTACTGTCTTC 60.128 38.462 0.00 0.00 0.00 2.87
3941 3962 1.497991 TGTTACTGTCTTCTGTGCGC 58.502 50.000 0.00 0.00 0.00 6.09
4093 4115 2.046892 AGCATCGCCACAGGTGTC 60.047 61.111 0.00 0.00 34.40 3.67
4298 4330 7.839907 TGGCAAGCTAATCTTTCAATTGTTAT 58.160 30.769 5.13 0.00 31.27 1.89
4299 4331 7.760794 TGGCAAGCTAATCTTTCAATTGTTATG 59.239 33.333 5.13 0.00 31.27 1.90
4419 4452 4.142138 ACGATAACCAGGATGTCACTTCTC 60.142 45.833 0.00 0.00 0.00 2.87
4423 4456 2.028930 ACCAGGATGTCACTTCTCGTTC 60.029 50.000 0.00 0.00 0.00 3.95
4440 4473 2.620115 CGTTCATATTCTGGGCATGCTT 59.380 45.455 18.92 0.00 0.00 3.91
4533 4566 5.943416 TCAACATATGGTCAAAAAGATCCGT 59.057 36.000 7.80 0.00 0.00 4.69
4546 4579 3.298686 AGATCCGTGGACATCTCAGTA 57.701 47.619 0.00 0.00 0.00 2.74
4628 4661 5.126384 TGTGGAAATTTGATCGAATAACCCC 59.874 40.000 19.67 13.40 0.00 4.95
4629 4662 4.647399 TGGAAATTTGATCGAATAACCCCC 59.353 41.667 19.67 12.75 0.00 5.40
4672 4705 4.935205 TGAAATGTCATAGTTCGACAAGGG 59.065 41.667 0.00 0.00 45.91 3.95
4710 4745 4.216257 GCAGATTGCTTTGAGGTTTGAGTA 59.784 41.667 0.00 0.00 40.96 2.59
4766 4802 2.521547 AGATAAAGCAGCCAAAGCCT 57.478 45.000 0.00 0.00 41.25 4.58
4767 4803 2.097825 AGATAAAGCAGCCAAAGCCTG 58.902 47.619 0.00 0.00 41.25 4.85
5295 5331 8.039603 TGAAATGCAACTTTGTTATCTACGAT 57.960 30.769 0.00 0.00 0.00 3.73
5573 5609 4.677182 ACCTTTTGTGCTCCCTTTATGAT 58.323 39.130 0.00 0.00 0.00 2.45
5576 5612 6.897413 ACCTTTTGTGCTCCCTTTATGATAAT 59.103 34.615 0.00 0.00 0.00 1.28
5663 5699 4.338118 TGAAAAGTTGGTGAATGACAGACC 59.662 41.667 0.00 0.00 0.00 3.85
5675 5711 4.574599 ATGACAGACCTTTTGAACTTGC 57.425 40.909 0.00 0.00 0.00 4.01
5713 5749 1.425066 ACTGATGCTTCTTTGACCCCA 59.575 47.619 0.88 0.00 0.00 4.96
5792 5828 1.164411 TGTGCTCCCATGCTAAAACG 58.836 50.000 0.00 0.00 0.00 3.60
5793 5829 1.165270 GTGCTCCCATGCTAAAACGT 58.835 50.000 0.00 0.00 0.00 3.99
5852 5917 3.367703 GCCATGTAGCAATTGTTTGAGCT 60.368 43.478 7.40 0.00 40.92 4.09
5856 5921 5.356882 TGTAGCAATTGTTTGAGCTGTAC 57.643 39.130 7.40 0.00 37.94 2.90
5857 5922 5.063204 TGTAGCAATTGTTTGAGCTGTACT 58.937 37.500 7.40 0.00 37.94 2.73
5858 5923 5.530915 TGTAGCAATTGTTTGAGCTGTACTT 59.469 36.000 7.40 0.00 37.94 2.24
5869 5934 2.664085 GAGCTGTACTTCTGTTTCTCGC 59.336 50.000 0.00 0.00 0.00 5.03
5984 6052 0.390340 GTCGAGCAGCAATCCAGACA 60.390 55.000 0.00 0.00 0.00 3.41
6053 6121 8.691797 GGATACCAAAATATTGCTTTTGAGGTA 58.308 33.333 9.72 5.81 44.97 3.08
6094 6162 3.897239 TCAGAAACCTTCTTTTCCTGCA 58.103 40.909 0.00 0.00 38.11 4.41
6119 6187 4.032703 ACTGTGTCATCAGTTTGTTTGC 57.967 40.909 3.18 0.00 44.92 3.68
6138 6206 4.645762 TGCTATCACTCTGATCTGACAC 57.354 45.455 0.00 0.00 38.26 3.67
6140 6208 4.708909 TGCTATCACTCTGATCTGACACTT 59.291 41.667 0.00 0.00 38.26 3.16
6145 6213 4.001652 CACTCTGATCTGACACTTGCAAT 58.998 43.478 0.00 0.00 0.00 3.56
6146 6214 4.093115 CACTCTGATCTGACACTTGCAATC 59.907 45.833 0.00 0.00 0.00 2.67
6156 6224 2.154462 CACTTGCAATCCTTCCGTTCT 58.846 47.619 0.00 0.00 0.00 3.01
6178 6246 4.074259 TCATTGACCAACAGGTGATGAAG 58.926 43.478 7.47 0.00 34.34 3.02
6190 6258 9.293404 CAACAGGTGATGAAGAATGGATATATT 57.707 33.333 0.00 0.00 0.00 1.28
6223 6291 2.685388 TCTCTTCCAGTCATGAGTAGCG 59.315 50.000 1.86 0.00 0.00 4.26
6243 6331 2.159421 CGTAGCTGAACCTGATGTACGT 60.159 50.000 0.00 0.00 0.00 3.57
6250 6338 0.613260 ACCTGATGTACGTGGCATGT 59.387 50.000 17.65 17.65 0.00 3.21
6254 6342 3.687212 CCTGATGTACGTGGCATGTAAAA 59.313 43.478 20.48 12.62 0.00 1.52
6256 6344 5.163663 CCTGATGTACGTGGCATGTAAAATT 60.164 40.000 20.48 2.00 0.00 1.82
6257 6345 6.037720 CCTGATGTACGTGGCATGTAAAATTA 59.962 38.462 20.48 12.77 0.00 1.40
6271 6359 6.528537 TGTAAAATTATGTGAAGCATGCCT 57.471 33.333 15.66 0.00 38.47 4.75
6273 6361 3.976793 AATTATGTGAAGCATGCCTCG 57.023 42.857 15.66 0.00 38.47 4.63
6275 6363 2.401583 TATGTGAAGCATGCCTCGTT 57.598 45.000 15.66 0.95 38.47 3.85
6276 6364 2.401583 ATGTGAAGCATGCCTCGTTA 57.598 45.000 15.66 1.65 36.26 3.18
6277 6365 1.438651 TGTGAAGCATGCCTCGTTAC 58.561 50.000 15.66 6.19 0.00 2.50
6278 6366 0.370273 GTGAAGCATGCCTCGTTACG 59.630 55.000 15.66 0.00 0.00 3.18
6332 6424 2.928416 GAACTGGGTTCCTTCCGTG 58.072 57.895 0.00 0.00 36.65 4.94
6333 6425 0.605589 GAACTGGGTTCCTTCCGTGG 60.606 60.000 0.00 0.00 36.65 4.94
6347 6439 5.424252 TCCTTCCGTGGTCTCTGTAAATATT 59.576 40.000 0.00 0.00 0.00 1.28
6350 6442 7.599245 CCTTCCGTGGTCTCTGTAAATATTATC 59.401 40.741 0.00 0.00 0.00 1.75
6390 6482 5.168526 TCAACTAATTAATCATGTGCGCC 57.831 39.130 4.18 0.00 0.00 6.53
6391 6483 4.036262 TCAACTAATTAATCATGTGCGCCC 59.964 41.667 4.18 0.00 0.00 6.13
6392 6484 3.550820 ACTAATTAATCATGTGCGCCCA 58.449 40.909 4.18 0.00 0.00 5.36
6393 6485 4.144297 ACTAATTAATCATGTGCGCCCAT 58.856 39.130 4.18 0.56 0.00 4.00
6394 6486 3.374220 AATTAATCATGTGCGCCCATG 57.626 42.857 24.64 24.64 42.89 3.66
6395 6487 1.761449 TTAATCATGTGCGCCCATGT 58.239 45.000 28.12 15.38 42.29 3.21
6396 6488 1.761449 TAATCATGTGCGCCCATGTT 58.239 45.000 28.12 22.63 42.29 2.71
6397 6489 1.761449 AATCATGTGCGCCCATGTTA 58.239 45.000 28.12 13.80 42.29 2.41
6399 6491 1.761449 TCATGTGCGCCCATGTTATT 58.239 45.000 28.12 0.00 42.29 1.40
6400 6492 1.404748 TCATGTGCGCCCATGTTATTG 59.595 47.619 28.12 7.59 42.29 1.90
6401 6493 0.102844 ATGTGCGCCCATGTTATTGC 59.897 50.000 4.01 0.00 0.00 3.56
6402 6494 1.226945 GTGCGCCCATGTTATTGCC 60.227 57.895 4.18 0.00 0.00 4.52
6403 6495 2.026014 GCGCCCATGTTATTGCCG 59.974 61.111 0.00 0.00 0.00 5.69
6405 6497 1.063972 CGCCCATGTTATTGCCGTG 59.936 57.895 0.00 0.00 0.00 4.94
6406 6498 1.437160 GCCCATGTTATTGCCGTGG 59.563 57.895 0.00 0.00 38.48 4.94
6407 6499 1.319614 GCCCATGTTATTGCCGTGGT 61.320 55.000 0.00 0.00 37.29 4.16
6408 6500 1.181786 CCCATGTTATTGCCGTGGTT 58.818 50.000 0.00 0.00 37.29 3.67
6409 6501 1.548269 CCCATGTTATTGCCGTGGTTT 59.452 47.619 0.00 0.00 37.29 3.27
6410 6502 2.028567 CCCATGTTATTGCCGTGGTTTT 60.029 45.455 0.00 0.00 37.29 2.43
6411 6503 2.992543 CCATGTTATTGCCGTGGTTTTG 59.007 45.455 0.00 0.00 34.82 2.44
6412 6504 3.553922 CCATGTTATTGCCGTGGTTTTGT 60.554 43.478 0.00 0.00 34.82 2.83
6413 6505 3.802948 TGTTATTGCCGTGGTTTTGTT 57.197 38.095 0.00 0.00 0.00 2.83
6414 6506 4.124851 TGTTATTGCCGTGGTTTTGTTT 57.875 36.364 0.00 0.00 0.00 2.83
6421 6513 2.025898 CCGTGGTTTTGTTTACCCTGT 58.974 47.619 0.00 0.00 34.66 4.00
6447 6550 1.072965 ACCTTCTTTGGCTGTCAGGAG 59.927 52.381 1.14 0.00 0.00 3.69
6456 6559 1.280421 GGCTGTCAGGAGACCTTGAAT 59.720 52.381 1.14 0.00 44.33 2.57
6457 6560 2.354259 GCTGTCAGGAGACCTTGAATG 58.646 52.381 1.14 0.00 44.33 2.67
6475 6578 7.278424 CCTTGAATGATAATTCCGTGCAAAATT 59.722 33.333 0.00 0.00 0.00 1.82
6485 6588 4.865776 TCCGTGCAAAATTAAACTCCTTG 58.134 39.130 0.00 0.00 0.00 3.61
6496 6599 7.530426 AATTAAACTCCTTGCATTCTGAGTT 57.470 32.000 12.28 12.28 46.88 3.01
6500 6603 0.529378 CCTTGCATTCTGAGTTGGCC 59.471 55.000 0.00 0.00 0.00 5.36
6504 6607 2.037901 TGCATTCTGAGTTGGCCAAAA 58.962 42.857 22.47 11.20 0.00 2.44
6505 6608 2.433604 TGCATTCTGAGTTGGCCAAAAA 59.566 40.909 22.47 10.12 0.00 1.94
6527 6630 2.311124 AATTCAGTAGTAGGGCGTGC 57.689 50.000 0.00 0.00 0.00 5.34
6528 6631 1.191535 ATTCAGTAGTAGGGCGTGCA 58.808 50.000 0.00 0.00 0.00 4.57
6529 6632 0.245539 TTCAGTAGTAGGGCGTGCAC 59.754 55.000 6.82 6.82 0.00 4.57
6530 6633 0.611062 TCAGTAGTAGGGCGTGCACT 60.611 55.000 16.19 0.73 0.00 4.40
6531 6634 0.246635 CAGTAGTAGGGCGTGCACTT 59.753 55.000 16.19 0.26 0.00 3.16
6532 6635 0.246635 AGTAGTAGGGCGTGCACTTG 59.753 55.000 16.19 0.69 0.00 3.16
6544 7151 2.031191 CGTGCACTTGTTTTTAGGTCGT 59.969 45.455 16.19 0.00 0.00 4.34
6559 7166 9.887406 TTTTTAGGTCGTTGATTTTGACTAATC 57.113 29.630 0.00 0.00 35.54 1.75
6560 7167 7.605410 TTAGGTCGTTGATTTTGACTAATCC 57.395 36.000 0.00 0.00 34.34 3.01
6563 7170 6.488683 AGGTCGTTGATTTTGACTAATCCAAA 59.511 34.615 0.00 0.00 34.34 3.28
6565 7172 7.326063 GGTCGTTGATTTTGACTAATCCAAAAG 59.674 37.037 0.00 0.00 43.83 2.27
6567 7174 7.860373 TCGTTGATTTTGACTAATCCAAAAGTG 59.140 33.333 0.00 0.00 43.83 3.16
6568 7175 7.647715 CGTTGATTTTGACTAATCCAAAAGTGT 59.352 33.333 0.00 0.00 43.83 3.55
6571 7292 9.959749 TGATTTTGACTAATCCAAAAGTGTAAC 57.040 29.630 0.00 0.00 43.83 2.50
6604 7325 6.129062 CGAATACGAATCCAGTGATTAGCTTC 60.129 42.308 0.00 0.00 41.30 3.86
6606 7327 4.437239 ACGAATCCAGTGATTAGCTTCTG 58.563 43.478 0.00 0.00 41.30 3.02
6613 7396 5.053145 CCAGTGATTAGCTTCTGATGGTAC 58.947 45.833 0.00 0.00 0.00 3.34
6631 7414 6.233905 TGGTACATAATACATGTGCTCAGT 57.766 37.500 9.11 4.55 35.44 3.41
6643 7431 1.215647 GCTCAGTACACCTGACCGG 59.784 63.158 0.00 0.00 45.34 5.28
6644 7432 1.248785 GCTCAGTACACCTGACCGGA 61.249 60.000 9.46 0.00 45.34 5.14
6645 7433 0.811915 CTCAGTACACCTGACCGGAG 59.188 60.000 9.46 0.00 45.34 4.63
6646 7434 1.215647 CAGTACACCTGACCGGAGC 59.784 63.158 9.46 0.00 44.49 4.70
6647 7435 2.181021 GTACACCTGACCGGAGCG 59.819 66.667 9.46 0.00 36.31 5.03
6648 7436 2.034532 TACACCTGACCGGAGCGA 59.965 61.111 9.46 0.00 36.31 4.93
6649 7437 2.044555 TACACCTGACCGGAGCGAG 61.045 63.158 9.46 0.00 36.31 5.03
6650 7438 4.803426 CACCTGACCGGAGCGAGC 62.803 72.222 9.46 0.00 36.31 5.03
6652 7440 4.504916 CCTGACCGGAGCGAGCTG 62.505 72.222 9.46 0.00 33.16 4.24
6653 7441 4.504916 CTGACCGGAGCGAGCTGG 62.505 72.222 9.46 0.66 40.29 4.85
6660 7448 1.302511 GGAGCGAGCTGGGTTTGAA 60.303 57.895 0.84 0.00 0.00 2.69
6693 7481 5.241949 ACCAACATTTAAGACGCCAAATACA 59.758 36.000 0.00 0.00 0.00 2.29
6694 7482 6.071616 ACCAACATTTAAGACGCCAAATACAT 60.072 34.615 0.00 0.00 0.00 2.29
6695 7483 7.121463 ACCAACATTTAAGACGCCAAATACATA 59.879 33.333 0.00 0.00 0.00 2.29
6696 7484 8.134895 CCAACATTTAAGACGCCAAATACATAT 58.865 33.333 0.00 0.00 0.00 1.78
6737 7591 6.385649 GTCAAACAGACTTGTTGGGATAAA 57.614 37.500 0.00 0.00 46.54 1.40
6797 7654 6.211584 AGTGCTCCAAGTTCTTGATAAGACTA 59.788 38.462 13.29 0.00 37.23 2.59
6825 7683 1.962547 CGACTGCACAAAACGAAATCG 59.037 47.619 0.48 0.48 46.33 3.34
6834 7692 5.713281 CACAAAACGAAATCGAAAACCAAG 58.287 37.500 10.16 0.00 43.02 3.61
6837 7695 3.701532 ACGAAATCGAAAACCAAGCAA 57.298 38.095 10.16 0.00 43.02 3.91
6848 7706 2.371658 ACCAAGCAAAAGAAGCTCCT 57.628 45.000 0.00 0.00 42.53 3.69
7074 7956 2.603652 GGTGGTGAAGGGGAGGTCC 61.604 68.421 0.00 0.00 0.00 4.46
7174 8056 1.614241 CCCCCAAGGTCGAAGATCGT 61.614 60.000 0.00 0.00 46.28 3.73
7181 8063 4.847516 TCGAAGATCGTGCCCGCG 62.848 66.667 0.00 0.00 41.35 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.794439 CGTCCGATCTGGCGCACA 62.794 66.667 10.83 3.75 37.80 4.57
7 8 4.492160 TCGTCCGATCTGGCGCAC 62.492 66.667 10.83 0.00 37.24 5.34
8 9 4.492160 GTCGTCCGATCTGGCGCA 62.492 66.667 10.83 0.00 37.24 6.09
9 10 4.194720 AGTCGTCCGATCTGGCGC 62.195 66.667 6.23 0.00 37.24 6.53
10 11 2.024871 GAGTCGTCCGATCTGGCG 59.975 66.667 4.61 4.61 38.22 5.69
11 12 2.413765 GGAGTCGTCCGATCTGGC 59.586 66.667 0.00 0.00 37.80 4.85
12 13 3.121019 GGGAGTCGTCCGATCTGG 58.879 66.667 0.00 0.00 45.05 3.86
18 19 4.831307 CGCTTCGGGAGTCGTCCG 62.831 72.222 1.70 1.70 45.05 4.79
19 20 4.493747 CCGCTTCGGGAGTCGTCC 62.494 72.222 0.00 0.00 44.15 4.79
29 30 1.398041 TGCAGAAAATCATCCGCTTCG 59.602 47.619 0.00 0.00 0.00 3.79
30 31 3.492421 TTGCAGAAAATCATCCGCTTC 57.508 42.857 0.00 0.00 0.00 3.86
31 32 3.507233 TCTTTGCAGAAAATCATCCGCTT 59.493 39.130 0.00 0.00 0.00 4.68
32 33 3.084039 TCTTTGCAGAAAATCATCCGCT 58.916 40.909 0.00 0.00 0.00 5.52
33 34 3.492421 TCTTTGCAGAAAATCATCCGC 57.508 42.857 0.00 0.00 0.00 5.54
34 35 5.239359 TGATCTTTGCAGAAAATCATCCG 57.761 39.130 0.00 0.00 30.76 4.18
35 36 6.214399 GGATGATCTTTGCAGAAAATCATCC 58.786 40.000 27.82 27.82 45.04 3.51
36 37 6.802608 TGGATGATCTTTGCAGAAAATCATC 58.197 36.000 22.07 22.07 40.32 2.92
37 38 6.605995 TCTGGATGATCTTTGCAGAAAATCAT 59.394 34.615 14.76 12.14 38.42 2.45
38 39 5.947566 TCTGGATGATCTTTGCAGAAAATCA 59.052 36.000 14.76 4.93 38.42 2.57
39 40 6.446781 TCTGGATGATCTTTGCAGAAAATC 57.553 37.500 14.76 0.00 38.42 2.17
40 41 6.605995 TCATCTGGATGATCTTTGCAGAAAAT 59.394 34.615 18.89 5.84 43.46 1.82
41 42 5.947566 TCATCTGGATGATCTTTGCAGAAAA 59.052 36.000 18.89 10.72 43.46 2.29
42 43 5.503002 TCATCTGGATGATCTTTGCAGAAA 58.497 37.500 18.89 10.98 43.46 2.52
43 44 5.106876 TCATCTGGATGATCTTTGCAGAA 57.893 39.130 18.89 6.38 43.46 3.02
44 45 4.765813 TCATCTGGATGATCTTTGCAGA 57.234 40.909 17.85 17.85 44.19 4.26
55 56 4.275196 CCACTGCTACAAATCATCTGGATG 59.725 45.833 4.36 4.36 36.02 3.51
56 57 4.458397 CCACTGCTACAAATCATCTGGAT 58.542 43.478 0.00 0.00 38.05 3.41
57 58 3.877559 CCACTGCTACAAATCATCTGGA 58.122 45.455 0.00 0.00 0.00 3.86
58 59 2.357009 GCCACTGCTACAAATCATCTGG 59.643 50.000 0.00 0.00 33.53 3.86
59 60 2.357009 GGCCACTGCTACAAATCATCTG 59.643 50.000 0.00 0.00 37.74 2.90
60 61 2.240667 AGGCCACTGCTACAAATCATCT 59.759 45.455 5.01 0.00 37.74 2.90
61 62 2.648059 AGGCCACTGCTACAAATCATC 58.352 47.619 5.01 0.00 37.74 2.92
62 63 2.814805 AGGCCACTGCTACAAATCAT 57.185 45.000 5.01 0.00 37.74 2.45
63 64 2.584835 AAGGCCACTGCTACAAATCA 57.415 45.000 5.01 0.00 37.74 2.57
64 65 3.942130 AAAAGGCCACTGCTACAAATC 57.058 42.857 5.01 0.00 37.74 2.17
65 66 5.076873 TCTTAAAAGGCCACTGCTACAAAT 58.923 37.500 5.01 0.00 37.74 2.32
66 67 4.465886 TCTTAAAAGGCCACTGCTACAAA 58.534 39.130 5.01 0.00 37.74 2.83
67 68 4.093472 TCTTAAAAGGCCACTGCTACAA 57.907 40.909 5.01 0.00 37.74 2.41
68 69 3.780804 TCTTAAAAGGCCACTGCTACA 57.219 42.857 5.01 0.00 37.74 2.74
69 70 5.880887 ACTATTCTTAAAAGGCCACTGCTAC 59.119 40.000 5.01 0.00 37.74 3.58
70 71 6.062258 ACTATTCTTAAAAGGCCACTGCTA 57.938 37.500 5.01 0.00 37.74 3.49
71 72 4.923415 ACTATTCTTAAAAGGCCACTGCT 58.077 39.130 5.01 0.00 37.74 4.24
72 73 6.944234 ATACTATTCTTAAAAGGCCACTGC 57.056 37.500 5.01 0.00 0.00 4.40
75 76 9.998106 TGAGATATACTATTCTTAAAAGGCCAC 57.002 33.333 5.01 0.00 0.00 5.01
96 97 9.678260 ACTTCTTGCTTTTATACTTGATGAGAT 57.322 29.630 0.00 0.00 0.00 2.75
97 98 9.155975 GACTTCTTGCTTTTATACTTGATGAGA 57.844 33.333 0.00 0.00 0.00 3.27
98 99 8.939929 TGACTTCTTGCTTTTATACTTGATGAG 58.060 33.333 0.00 0.00 0.00 2.90
99 100 8.846943 TGACTTCTTGCTTTTATACTTGATGA 57.153 30.769 0.00 0.00 0.00 2.92
100 101 9.897744 TTTGACTTCTTGCTTTTATACTTGATG 57.102 29.630 0.00 0.00 0.00 3.07
102 103 9.730420 GTTTTGACTTCTTGCTTTTATACTTGA 57.270 29.630 0.00 0.00 0.00 3.02
103 104 9.515020 TGTTTTGACTTCTTGCTTTTATACTTG 57.485 29.630 0.00 0.00 0.00 3.16
108 109 9.651913 TCTTTTGTTTTGACTTCTTGCTTTTAT 57.348 25.926 0.00 0.00 0.00 1.40
109 110 9.482627 TTCTTTTGTTTTGACTTCTTGCTTTTA 57.517 25.926 0.00 0.00 0.00 1.52
110 111 7.961325 TCTTTTGTTTTGACTTCTTGCTTTT 57.039 28.000 0.00 0.00 0.00 2.27
111 112 7.961325 TTCTTTTGTTTTGACTTCTTGCTTT 57.039 28.000 0.00 0.00 0.00 3.51
112 113 7.961325 TTTCTTTTGTTTTGACTTCTTGCTT 57.039 28.000 0.00 0.00 0.00 3.91
113 114 7.961325 TTTTCTTTTGTTTTGACTTCTTGCT 57.039 28.000 0.00 0.00 0.00 3.91
129 130 9.862585 GCGATGTCAATGTTTTAATTTTCTTTT 57.137 25.926 0.00 0.00 0.00 2.27
130 131 9.039870 TGCGATGTCAATGTTTTAATTTTCTTT 57.960 25.926 0.00 0.00 0.00 2.52
131 132 8.487176 GTGCGATGTCAATGTTTTAATTTTCTT 58.513 29.630 0.00 0.00 0.00 2.52
132 133 7.116233 GGTGCGATGTCAATGTTTTAATTTTCT 59.884 33.333 0.00 0.00 0.00 2.52
133 134 7.226772 GGTGCGATGTCAATGTTTTAATTTTC 58.773 34.615 0.00 0.00 0.00 2.29
134 135 6.147000 GGGTGCGATGTCAATGTTTTAATTTT 59.853 34.615 0.00 0.00 0.00 1.82
135 136 5.637387 GGGTGCGATGTCAATGTTTTAATTT 59.363 36.000 0.00 0.00 0.00 1.82
136 137 5.167845 GGGTGCGATGTCAATGTTTTAATT 58.832 37.500 0.00 0.00 0.00 1.40
137 138 4.219507 TGGGTGCGATGTCAATGTTTTAAT 59.780 37.500 0.00 0.00 0.00 1.40
138 139 3.570125 TGGGTGCGATGTCAATGTTTTAA 59.430 39.130 0.00 0.00 0.00 1.52
139 140 3.149981 TGGGTGCGATGTCAATGTTTTA 58.850 40.909 0.00 0.00 0.00 1.52
140 141 1.959985 TGGGTGCGATGTCAATGTTTT 59.040 42.857 0.00 0.00 0.00 2.43
141 142 1.614996 TGGGTGCGATGTCAATGTTT 58.385 45.000 0.00 0.00 0.00 2.83
142 143 1.614996 TTGGGTGCGATGTCAATGTT 58.385 45.000 0.00 0.00 0.00 2.71
143 144 1.614996 TTTGGGTGCGATGTCAATGT 58.385 45.000 0.00 0.00 0.00 2.71
144 145 2.721274 TTTTGGGTGCGATGTCAATG 57.279 45.000 0.00 0.00 0.00 2.82
145 146 2.627699 AGTTTTTGGGTGCGATGTCAAT 59.372 40.909 0.00 0.00 0.00 2.57
146 147 2.028130 AGTTTTTGGGTGCGATGTCAA 58.972 42.857 0.00 0.00 0.00 3.18
147 148 1.686355 AGTTTTTGGGTGCGATGTCA 58.314 45.000 0.00 0.00 0.00 3.58
148 149 2.034053 TCAAGTTTTTGGGTGCGATGTC 59.966 45.455 0.00 0.00 34.97 3.06
149 150 2.028130 TCAAGTTTTTGGGTGCGATGT 58.972 42.857 0.00 0.00 34.97 3.06
150 151 2.791383 TCAAGTTTTTGGGTGCGATG 57.209 45.000 0.00 0.00 34.97 3.84
151 152 3.810310 TTTCAAGTTTTTGGGTGCGAT 57.190 38.095 0.00 0.00 34.97 4.58
152 153 3.594603 TTTTCAAGTTTTTGGGTGCGA 57.405 38.095 0.00 0.00 34.97 5.10
173 174 1.890489 GTGCCATCTTACGGGGTTTTT 59.110 47.619 0.00 0.00 0.00 1.94
174 175 1.202952 TGTGCCATCTTACGGGGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
175 176 0.402504 TGTGCCATCTTACGGGGTTT 59.597 50.000 0.00 0.00 0.00 3.27
176 177 0.402504 TTGTGCCATCTTACGGGGTT 59.597 50.000 0.00 0.00 0.00 4.11
177 178 0.402504 TTTGTGCCATCTTACGGGGT 59.597 50.000 0.00 0.00 0.00 4.95
178 179 1.540267 TTTTGTGCCATCTTACGGGG 58.460 50.000 0.00 0.00 0.00 5.73
179 180 2.556622 AGTTTTTGTGCCATCTTACGGG 59.443 45.455 0.00 0.00 0.00 5.28
180 181 3.915437 AGTTTTTGTGCCATCTTACGG 57.085 42.857 0.00 0.00 0.00 4.02
181 182 5.277825 TCAAAGTTTTTGTGCCATCTTACG 58.722 37.500 1.92 0.00 0.00 3.18
182 183 7.307337 CCAATCAAAGTTTTTGTGCCATCTTAC 60.307 37.037 1.92 0.00 0.00 2.34
183 184 6.705381 CCAATCAAAGTTTTTGTGCCATCTTA 59.295 34.615 1.92 0.00 0.00 2.10
184 185 5.528320 CCAATCAAAGTTTTTGTGCCATCTT 59.472 36.000 1.92 0.00 0.00 2.40
185 186 5.058490 CCAATCAAAGTTTTTGTGCCATCT 58.942 37.500 1.92 0.00 0.00 2.90
186 187 4.319694 GCCAATCAAAGTTTTTGTGCCATC 60.320 41.667 1.92 0.00 0.00 3.51
187 188 3.565063 GCCAATCAAAGTTTTTGTGCCAT 59.435 39.130 1.92 0.00 0.00 4.40
188 189 2.941720 GCCAATCAAAGTTTTTGTGCCA 59.058 40.909 1.92 0.00 0.00 4.92
189 190 2.941720 TGCCAATCAAAGTTTTTGTGCC 59.058 40.909 1.92 0.00 0.00 5.01
190 191 3.373439 TGTGCCAATCAAAGTTTTTGTGC 59.627 39.130 1.92 4.01 0.00 4.57
191 192 4.201802 GGTGTGCCAATCAAAGTTTTTGTG 60.202 41.667 1.92 0.00 34.09 3.33
192 193 3.938334 GGTGTGCCAATCAAAGTTTTTGT 59.062 39.130 1.92 0.00 34.09 2.83
193 194 3.937706 TGGTGTGCCAATCAAAGTTTTTG 59.062 39.130 0.00 0.00 42.83 2.44
194 195 4.213564 TGGTGTGCCAATCAAAGTTTTT 57.786 36.364 0.00 0.00 42.83 1.94
195 196 3.902881 TGGTGTGCCAATCAAAGTTTT 57.097 38.095 0.00 0.00 42.83 2.43
206 207 9.514908 AAAGGATTTCGTTTTTATGGTGTGCCA 62.515 37.037 0.00 0.00 41.83 4.92
207 208 3.924073 GGATTTCGTTTTTATGGTGTGCC 59.076 43.478 0.00 0.00 0.00 5.01
208 209 4.805219 AGGATTTCGTTTTTATGGTGTGC 58.195 39.130 0.00 0.00 0.00 4.57
209 210 7.707774 AAAAGGATTTCGTTTTTATGGTGTG 57.292 32.000 5.42 0.00 39.88 3.82
210 211 9.634163 GATAAAAGGATTTCGTTTTTATGGTGT 57.366 29.630 14.07 0.00 41.99 4.16
211 212 9.632807 TGATAAAAGGATTTCGTTTTTATGGTG 57.367 29.630 14.07 0.00 41.99 4.17
227 228 9.594936 TCAAGGGTTAAGAAAATGATAAAAGGA 57.405 29.630 0.00 0.00 0.00 3.36
233 234 8.802267 CCAAGTTCAAGGGTTAAGAAAATGATA 58.198 33.333 0.00 0.00 0.00 2.15
234 235 7.670364 CCAAGTTCAAGGGTTAAGAAAATGAT 58.330 34.615 0.00 0.00 0.00 2.45
235 236 6.462347 GCCAAGTTCAAGGGTTAAGAAAATGA 60.462 38.462 0.00 0.00 0.00 2.57
236 237 5.696270 GCCAAGTTCAAGGGTTAAGAAAATG 59.304 40.000 0.00 0.00 0.00 2.32
237 238 5.602561 AGCCAAGTTCAAGGGTTAAGAAAAT 59.397 36.000 0.00 0.00 29.87 1.82
238 239 4.959839 AGCCAAGTTCAAGGGTTAAGAAAA 59.040 37.500 0.00 0.00 29.87 2.29
239 240 4.542697 AGCCAAGTTCAAGGGTTAAGAAA 58.457 39.130 0.00 0.00 29.87 2.52
240 241 4.178956 AGCCAAGTTCAAGGGTTAAGAA 57.821 40.909 0.00 0.00 29.87 2.52
241 242 3.876309 AGCCAAGTTCAAGGGTTAAGA 57.124 42.857 0.00 0.00 29.87 2.10
242 243 4.340950 TCAAAGCCAAGTTCAAGGGTTAAG 59.659 41.667 0.00 0.00 44.23 1.85
243 244 4.282496 TCAAAGCCAAGTTCAAGGGTTAA 58.718 39.130 0.00 0.00 44.23 2.01
244 245 3.904717 TCAAAGCCAAGTTCAAGGGTTA 58.095 40.909 0.00 0.00 44.23 2.85
245 246 2.745968 TCAAAGCCAAGTTCAAGGGTT 58.254 42.857 0.00 0.00 46.74 4.11
246 247 2.452600 TCAAAGCCAAGTTCAAGGGT 57.547 45.000 0.00 0.00 37.18 4.34
247 248 3.070015 ACAATCAAAGCCAAGTTCAAGGG 59.930 43.478 0.00 0.00 0.00 3.95
248 249 4.326504 ACAATCAAAGCCAAGTTCAAGG 57.673 40.909 0.00 0.00 0.00 3.61
249 250 5.350633 TCAACAATCAAAGCCAAGTTCAAG 58.649 37.500 0.00 0.00 0.00 3.02
250 251 5.336150 TCAACAATCAAAGCCAAGTTCAA 57.664 34.783 0.00 0.00 0.00 2.69
251 252 4.998671 TCAACAATCAAAGCCAAGTTCA 57.001 36.364 0.00 0.00 0.00 3.18
252 253 5.005682 GTGTTCAACAATCAAAGCCAAGTTC 59.994 40.000 0.00 0.00 0.00 3.01
253 254 4.869861 GTGTTCAACAATCAAAGCCAAGTT 59.130 37.500 0.00 0.00 0.00 2.66
254 255 4.081752 TGTGTTCAACAATCAAAGCCAAGT 60.082 37.500 0.00 0.00 35.24 3.16
255 256 4.431809 TGTGTTCAACAATCAAAGCCAAG 58.568 39.130 0.00 0.00 35.24 3.61
256 257 4.462508 TGTGTTCAACAATCAAAGCCAA 57.537 36.364 0.00 0.00 35.24 4.52
257 258 4.462508 TTGTGTTCAACAATCAAAGCCA 57.537 36.364 0.00 0.00 43.96 4.75
267 268 8.100508 TGTATAAAATCCGATTGTGTTCAACA 57.899 30.769 0.00 0.00 36.33 3.33
268 269 9.009327 CATGTATAAAATCCGATTGTGTTCAAC 57.991 33.333 0.00 0.00 36.33 3.18
269 270 7.700234 GCATGTATAAAATCCGATTGTGTTCAA 59.300 33.333 0.00 0.00 37.98 2.69
270 271 7.066887 AGCATGTATAAAATCCGATTGTGTTCA 59.933 33.333 0.00 0.00 0.00 3.18
271 272 7.417612 AGCATGTATAAAATCCGATTGTGTTC 58.582 34.615 0.00 0.00 0.00 3.18
272 273 7.333528 AGCATGTATAAAATCCGATTGTGTT 57.666 32.000 0.00 0.00 0.00 3.32
273 274 6.942532 AGCATGTATAAAATCCGATTGTGT 57.057 33.333 0.00 0.00 0.00 3.72
274 275 7.195646 ACAAGCATGTATAAAATCCGATTGTG 58.804 34.615 0.00 0.00 38.24 3.33
275 276 7.333528 ACAAGCATGTATAAAATCCGATTGT 57.666 32.000 0.00 0.00 38.24 2.71
276 277 9.729023 TTTACAAGCATGTATAAAATCCGATTG 57.271 29.630 2.11 0.00 41.51 2.67
277 278 9.730420 GTTTACAAGCATGTATAAAATCCGATT 57.270 29.630 2.11 0.00 41.51 3.34
278 279 9.120538 AGTTTACAAGCATGTATAAAATCCGAT 57.879 29.630 2.11 0.00 41.51 4.18
279 280 8.500753 AGTTTACAAGCATGTATAAAATCCGA 57.499 30.769 2.11 0.00 41.51 4.55
280 281 9.009327 CAAGTTTACAAGCATGTATAAAATCCG 57.991 33.333 2.11 0.00 41.51 4.18
281 282 9.855021 ACAAGTTTACAAGCATGTATAAAATCC 57.145 29.630 2.11 0.00 41.51 3.01
284 285 9.891828 CTCACAAGTTTACAAGCATGTATAAAA 57.108 29.630 2.11 0.00 41.51 1.52
285 286 8.020819 GCTCACAAGTTTACAAGCATGTATAAA 58.979 33.333 2.11 0.00 41.51 1.40
286 287 7.390440 AGCTCACAAGTTTACAAGCATGTATAA 59.610 33.333 2.11 0.00 41.51 0.98
287 288 6.878923 AGCTCACAAGTTTACAAGCATGTATA 59.121 34.615 2.11 0.00 41.51 1.47
288 289 5.707298 AGCTCACAAGTTTACAAGCATGTAT 59.293 36.000 2.11 0.00 41.51 2.29
289 290 5.049474 CAGCTCACAAGTTTACAAGCATGTA 60.049 40.000 0.00 0.00 41.05 2.29
290 291 3.885297 AGCTCACAAGTTTACAAGCATGT 59.115 39.130 0.00 0.00 43.74 3.21
291 292 4.224433 CAGCTCACAAGTTTACAAGCATG 58.776 43.478 0.00 0.00 32.25 4.06
292 293 3.304928 GCAGCTCACAAGTTTACAAGCAT 60.305 43.478 0.00 0.00 32.25 3.79
293 294 2.033299 GCAGCTCACAAGTTTACAAGCA 59.967 45.455 0.00 0.00 32.25 3.91
294 295 2.291741 AGCAGCTCACAAGTTTACAAGC 59.708 45.455 0.00 0.00 0.00 4.01
295 296 3.058639 GGAGCAGCTCACAAGTTTACAAG 60.059 47.826 24.09 0.00 31.08 3.16
296 297 2.878406 GGAGCAGCTCACAAGTTTACAA 59.122 45.455 24.09 0.00 31.08 2.41
297 298 2.104792 AGGAGCAGCTCACAAGTTTACA 59.895 45.455 24.09 0.00 31.08 2.41
298 299 2.772287 AGGAGCAGCTCACAAGTTTAC 58.228 47.619 24.09 3.16 31.08 2.01
299 300 3.141398 CAAGGAGCAGCTCACAAGTTTA 58.859 45.455 24.09 0.00 31.08 2.01
300 301 1.952296 CAAGGAGCAGCTCACAAGTTT 59.048 47.619 24.09 5.40 31.08 2.66
301 302 1.602311 CAAGGAGCAGCTCACAAGTT 58.398 50.000 24.09 6.12 31.08 2.66
302 303 0.250640 CCAAGGAGCAGCTCACAAGT 60.251 55.000 24.09 0.90 31.08 3.16
303 304 1.584380 GCCAAGGAGCAGCTCACAAG 61.584 60.000 24.09 10.60 31.08 3.16
304 305 1.601759 GCCAAGGAGCAGCTCACAA 60.602 57.895 24.09 0.00 31.08 3.33
305 306 2.033141 GCCAAGGAGCAGCTCACA 59.967 61.111 24.09 0.00 31.08 3.58
306 307 2.033141 TGCCAAGGAGCAGCTCAC 59.967 61.111 24.09 13.08 38.00 3.51
313 314 6.543831 TCTTTTTCTCTTATATGCCAAGGAGC 59.456 38.462 0.00 0.00 0.00 4.70
314 315 8.511604 TTCTTTTTCTCTTATATGCCAAGGAG 57.488 34.615 0.00 0.00 0.00 3.69
315 316 8.877864 TTTCTTTTTCTCTTATATGCCAAGGA 57.122 30.769 0.00 0.00 0.00 3.36
316 317 8.193438 CCTTTCTTTTTCTCTTATATGCCAAGG 58.807 37.037 0.00 0.00 0.00 3.61
317 318 8.960591 TCCTTTCTTTTTCTCTTATATGCCAAG 58.039 33.333 0.00 0.00 0.00 3.61
318 319 8.739972 GTCCTTTCTTTTTCTCTTATATGCCAA 58.260 33.333 0.00 0.00 0.00 4.52
319 320 7.888021 TGTCCTTTCTTTTTCTCTTATATGCCA 59.112 33.333 0.00 0.00 0.00 4.92
320 321 8.184848 GTGTCCTTTCTTTTTCTCTTATATGCC 58.815 37.037 0.00 0.00 0.00 4.40
321 322 8.730680 TGTGTCCTTTCTTTTTCTCTTATATGC 58.269 33.333 0.00 0.00 0.00 3.14
325 326 9.190317 ACTTTGTGTCCTTTCTTTTTCTCTTAT 57.810 29.630 0.00 0.00 0.00 1.73
326 327 8.575649 ACTTTGTGTCCTTTCTTTTTCTCTTA 57.424 30.769 0.00 0.00 0.00 2.10
327 328 7.468141 ACTTTGTGTCCTTTCTTTTTCTCTT 57.532 32.000 0.00 0.00 0.00 2.85
328 329 7.468141 AACTTTGTGTCCTTTCTTTTTCTCT 57.532 32.000 0.00 0.00 0.00 3.10
329 330 8.534333 AAAACTTTGTGTCCTTTCTTTTTCTC 57.466 30.769 0.00 0.00 0.00 2.87
330 331 8.902540 AAAAACTTTGTGTCCTTTCTTTTTCT 57.097 26.923 0.00 0.00 0.00 2.52
334 335 9.378551 GGATTAAAAACTTTGTGTCCTTTCTTT 57.621 29.630 0.00 0.00 0.00 2.52
335 336 7.704899 CGGATTAAAAACTTTGTGTCCTTTCTT 59.295 33.333 0.00 0.00 0.00 2.52
336 337 7.067737 TCGGATTAAAAACTTTGTGTCCTTTCT 59.932 33.333 0.00 0.00 0.00 2.52
337 338 7.197703 TCGGATTAAAAACTTTGTGTCCTTTC 58.802 34.615 0.00 0.00 0.00 2.62
338 339 7.102847 TCGGATTAAAAACTTTGTGTCCTTT 57.897 32.000 0.00 0.00 0.00 3.11
339 340 6.702716 TCGGATTAAAAACTTTGTGTCCTT 57.297 33.333 0.00 0.00 0.00 3.36
340 341 5.278315 GCTCGGATTAAAAACTTTGTGTCCT 60.278 40.000 0.00 0.00 0.00 3.85
341 342 4.915667 GCTCGGATTAAAAACTTTGTGTCC 59.084 41.667 0.00 0.00 0.00 4.02
342 343 5.758924 AGCTCGGATTAAAAACTTTGTGTC 58.241 37.500 0.00 0.00 0.00 3.67
343 344 5.298276 TGAGCTCGGATTAAAAACTTTGTGT 59.702 36.000 9.64 0.00 0.00 3.72
344 345 5.757886 TGAGCTCGGATTAAAAACTTTGTG 58.242 37.500 9.64 0.00 0.00 3.33
345 346 6.575162 ATGAGCTCGGATTAAAAACTTTGT 57.425 33.333 9.64 0.00 0.00 2.83
346 347 7.166473 GCATATGAGCTCGGATTAAAAACTTTG 59.834 37.037 9.64 0.00 0.00 2.77
347 348 7.148086 TGCATATGAGCTCGGATTAAAAACTTT 60.148 33.333 9.64 0.00 34.99 2.66
348 349 6.318648 TGCATATGAGCTCGGATTAAAAACTT 59.681 34.615 9.64 0.00 34.99 2.66
349 350 5.822519 TGCATATGAGCTCGGATTAAAAACT 59.177 36.000 9.64 0.00 34.99 2.66
350 351 5.909610 GTGCATATGAGCTCGGATTAAAAAC 59.090 40.000 9.64 0.00 34.99 2.43
351 352 5.588246 TGTGCATATGAGCTCGGATTAAAAA 59.412 36.000 9.64 0.00 34.99 1.94
352 353 5.007626 GTGTGCATATGAGCTCGGATTAAAA 59.992 40.000 9.64 0.00 34.99 1.52
353 354 4.511454 GTGTGCATATGAGCTCGGATTAAA 59.489 41.667 9.64 0.00 34.99 1.52
354 355 4.058124 GTGTGCATATGAGCTCGGATTAA 58.942 43.478 9.64 0.00 34.99 1.40
355 356 3.321968 AGTGTGCATATGAGCTCGGATTA 59.678 43.478 9.64 0.00 34.99 1.75
356 357 2.103771 AGTGTGCATATGAGCTCGGATT 59.896 45.455 9.64 0.00 34.99 3.01
357 358 1.690893 AGTGTGCATATGAGCTCGGAT 59.309 47.619 9.64 1.45 34.99 4.18
358 359 1.114627 AGTGTGCATATGAGCTCGGA 58.885 50.000 9.64 0.00 34.99 4.55
359 360 1.202452 TCAGTGTGCATATGAGCTCGG 60.202 52.381 9.64 0.00 34.99 4.63
360 361 2.214387 TCAGTGTGCATATGAGCTCG 57.786 50.000 9.64 0.00 34.99 5.03
361 362 4.152045 GCTAATCAGTGTGCATATGAGCTC 59.848 45.833 6.82 6.82 34.99 4.09
362 363 4.063689 GCTAATCAGTGTGCATATGAGCT 58.936 43.478 6.97 0.00 34.99 4.09
363 364 3.811497 TGCTAATCAGTGTGCATATGAGC 59.189 43.478 6.97 2.87 0.00 4.26
364 365 5.593183 CTGCTAATCAGTGTGCATATGAG 57.407 43.478 6.97 0.00 38.02 2.90
449 450 8.723311 CCAAATTGACAAGCATGTGATAAATTT 58.277 29.630 0.00 4.28 40.74 1.82
450 451 7.879160 ACCAAATTGACAAGCATGTGATAAATT 59.121 29.630 0.00 0.00 40.74 1.82
451 452 7.332430 CACCAAATTGACAAGCATGTGATAAAT 59.668 33.333 0.00 0.00 40.74 1.40
452 453 6.645827 CACCAAATTGACAAGCATGTGATAAA 59.354 34.615 0.00 0.00 40.74 1.40
453 454 6.015603 TCACCAAATTGACAAGCATGTGATAA 60.016 34.615 0.00 0.00 40.74 1.75
454 455 5.476254 TCACCAAATTGACAAGCATGTGATA 59.524 36.000 0.00 0.00 40.74 2.15
455 456 4.281435 TCACCAAATTGACAAGCATGTGAT 59.719 37.500 0.00 0.00 40.74 3.06
456 457 3.635836 TCACCAAATTGACAAGCATGTGA 59.364 39.130 0.00 8.48 40.74 3.58
457 458 3.737266 GTCACCAAATTGACAAGCATGTG 59.263 43.478 0.00 0.00 44.62 3.21
458 459 3.981211 GTCACCAAATTGACAAGCATGT 58.019 40.909 0.00 0.00 44.62 3.21
467 468 5.850557 ATGTCACTTTGTCACCAAATTGA 57.149 34.783 0.00 4.68 43.68 2.57
468 469 6.534436 TGAAATGTCACTTTGTCACCAAATTG 59.466 34.615 0.00 0.00 40.61 2.32
469 470 6.638610 TGAAATGTCACTTTGTCACCAAATT 58.361 32.000 0.00 0.00 39.72 1.82
470 471 6.219417 TGAAATGTCACTTTGTCACCAAAT 57.781 33.333 0.00 0.00 39.72 2.32
471 472 5.651387 TGAAATGTCACTTTGTCACCAAA 57.349 34.783 0.00 0.00 38.22 3.28
472 473 5.651387 TTGAAATGTCACTTTGTCACCAA 57.349 34.783 0.00 0.00 31.90 3.67
473 474 5.850557 ATTGAAATGTCACTTTGTCACCA 57.149 34.783 0.00 0.00 31.90 4.17
474 475 7.401080 CAAAATTGAAATGTCACTTTGTCACC 58.599 34.615 2.22 0.00 36.90 4.02
475 476 7.277539 TCCAAAATTGAAATGTCACTTTGTCAC 59.722 33.333 14.41 0.00 36.90 3.67
476 477 7.326454 TCCAAAATTGAAATGTCACTTTGTCA 58.674 30.769 14.41 3.36 36.90 3.58
477 478 7.517259 GCTCCAAAATTGAAATGTCACTTTGTC 60.517 37.037 14.41 4.66 36.90 3.18
478 479 6.258507 GCTCCAAAATTGAAATGTCACTTTGT 59.741 34.615 14.41 0.79 36.90 2.83
479 480 6.258287 TGCTCCAAAATTGAAATGTCACTTTG 59.742 34.615 10.74 10.74 36.90 2.77
480 481 6.347696 TGCTCCAAAATTGAAATGTCACTTT 58.652 32.000 0.00 0.00 38.03 2.66
481 482 5.916318 TGCTCCAAAATTGAAATGTCACTT 58.084 33.333 0.00 0.00 31.90 3.16
482 483 5.534207 TGCTCCAAAATTGAAATGTCACT 57.466 34.783 0.00 0.00 31.90 3.41
483 484 5.061311 CGATGCTCCAAAATTGAAATGTCAC 59.939 40.000 0.00 0.00 31.90 3.67
484 485 5.048154 TCGATGCTCCAAAATTGAAATGTCA 60.048 36.000 0.00 0.00 0.00 3.58
485 486 5.401550 TCGATGCTCCAAAATTGAAATGTC 58.598 37.500 0.00 0.00 0.00 3.06
486 487 5.389859 TCGATGCTCCAAAATTGAAATGT 57.610 34.783 0.00 0.00 0.00 2.71
487 488 6.897259 AATCGATGCTCCAAAATTGAAATG 57.103 33.333 0.00 0.00 0.00 2.32
488 489 7.820872 AGAAAATCGATGCTCCAAAATTGAAAT 59.179 29.630 0.00 0.00 0.00 2.17
489 490 7.153985 AGAAAATCGATGCTCCAAAATTGAAA 58.846 30.769 0.00 0.00 0.00 2.69
490 491 6.690530 AGAAAATCGATGCTCCAAAATTGAA 58.309 32.000 0.00 0.00 0.00 2.69
491 492 6.271488 AGAAAATCGATGCTCCAAAATTGA 57.729 33.333 0.00 0.00 0.00 2.57
492 493 6.956299 AAGAAAATCGATGCTCCAAAATTG 57.044 33.333 0.00 0.00 0.00 2.32
493 494 9.657419 AAATAAGAAAATCGATGCTCCAAAATT 57.343 25.926 0.00 0.00 0.00 1.82
494 495 9.657419 AAAATAAGAAAATCGATGCTCCAAAAT 57.343 25.926 0.00 0.00 0.00 1.82
495 496 9.487790 AAAAATAAGAAAATCGATGCTCCAAAA 57.512 25.926 0.00 0.00 0.00 2.44
518 519 1.142060 TTCTGGAGGTCCGGGAAAAA 58.858 50.000 0.00 0.00 42.72 1.94
519 520 1.142060 TTTCTGGAGGTCCGGGAAAA 58.858 50.000 0.00 0.00 42.72 2.29
520 521 1.004277 CATTTCTGGAGGTCCGGGAAA 59.996 52.381 0.00 14.95 42.91 3.13
521 522 0.618458 CATTTCTGGAGGTCCGGGAA 59.382 55.000 0.00 0.73 43.75 3.97
522 523 0.546747 ACATTTCTGGAGGTCCGGGA 60.547 55.000 0.00 0.00 42.72 5.14
523 524 0.328258 AACATTTCTGGAGGTCCGGG 59.672 55.000 0.00 0.00 42.72 5.73
524 525 3.560636 ATAACATTTCTGGAGGTCCGG 57.439 47.619 0.00 0.00 43.86 5.14
525 526 4.941263 TGAAATAACATTTCTGGAGGTCCG 59.059 41.667 11.69 0.00 39.43 4.79
526 527 6.603201 TGATGAAATAACATTTCTGGAGGTCC 59.397 38.462 11.69 0.00 0.00 4.46
527 528 7.475840 GTGATGAAATAACATTTCTGGAGGTC 58.524 38.462 11.69 3.57 0.00 3.85
528 529 6.094048 CGTGATGAAATAACATTTCTGGAGGT 59.906 38.462 11.69 0.00 0.00 3.85
529 530 6.316140 TCGTGATGAAATAACATTTCTGGAGG 59.684 38.462 11.69 3.44 0.00 4.30
535 536 9.464248 GCAAAATTCGTGATGAAATAACATTTC 57.536 29.630 4.96 4.96 40.71 2.17
657 659 2.048444 AATTCCGAGCTCACATGCAT 57.952 45.000 15.40 0.00 34.99 3.96
678 680 5.771602 TTTCTTTTTCGAAAGCGCTTTTT 57.228 30.435 34.01 15.85 37.46 1.94
681 683 3.550275 GGTTTTCTTTTTCGAAAGCGCTT 59.450 39.130 18.98 18.98 35.69 4.68
706 709 0.863144 GTTACGTTTGCTTCCTCGCA 59.137 50.000 0.00 0.00 38.31 5.10
710 713 2.228138 TCACGTTACGTTTGCTTCCT 57.772 45.000 7.98 0.00 38.32 3.36
745 748 1.579429 CACCGGTTGCTTACTTGCC 59.421 57.895 2.97 0.00 0.00 4.52
856 859 0.442699 GCTTAACGAGAAGCCAACGG 59.557 55.000 12.99 0.00 45.08 4.44
1637 1640 4.023963 GCTTAAAACGCAGGTTTCTCTTCT 60.024 41.667 0.00 0.00 45.35 2.85
1743 1747 1.473278 TCAATCTGCGCAAATGCATCA 59.527 42.857 13.05 2.07 45.26 3.07
1866 1870 5.003160 CAGAATGAACCACACCAATCAGTA 58.997 41.667 0.00 0.00 39.69 2.74
1970 1974 3.803778 GCAATTGACTGAAACAAACCTGG 59.196 43.478 10.34 0.00 0.00 4.45
1988 1992 6.894103 AGAGTATCAAGGAAAATCCAAGCAAT 59.106 34.615 0.00 0.00 36.77 3.56
1989 1993 6.151648 CAGAGTATCAAGGAAAATCCAAGCAA 59.848 38.462 0.00 0.00 36.77 3.91
1997 2001 5.324409 TGCAACCAGAGTATCAAGGAAAAT 58.676 37.500 0.00 0.00 37.82 1.82
2054 2058 7.761409 ACAAACAAATGCTACTGTATACATGG 58.239 34.615 5.91 0.00 0.00 3.66
2238 2243 6.974932 ATCTCAAGTGCAAAGTATGTACAG 57.025 37.500 0.33 0.00 0.00 2.74
2297 2304 7.578380 GCCTCTGCAGGAGAAAAATAAAAGAAT 60.578 37.037 15.13 0.00 43.65 2.40
2440 2447 6.097839 ACATATAAGCTTTACTCGACCCAAGA 59.902 38.462 3.20 0.00 0.00 3.02
2733 2740 6.001460 TGTGAGTAAGATAAACCCAAACAGG 58.999 40.000 0.00 0.00 37.03 4.00
2839 2846 9.791820 TTATGCAGAAATGAATGTGACTATTTG 57.208 29.630 0.00 0.00 0.00 2.32
2960 2967 9.841880 GTTGAGCTATCATATATAGAAACACGA 57.158 33.333 0.00 0.00 34.73 4.35
3226 3233 2.628178 AGTTTGGGACTTAAGGCTTTGC 59.372 45.455 8.57 0.00 33.92 3.68
3247 3254 2.972713 CAGCTCTAGCCTACCCCAAATA 59.027 50.000 0.00 0.00 43.38 1.40
3249 3256 1.204146 CAGCTCTAGCCTACCCCAAA 58.796 55.000 0.00 0.00 43.38 3.28
3307 3315 2.421619 GTGGAAGCTAGCTATCCATGC 58.578 52.381 32.65 23.68 44.55 4.06
3480 3498 4.210331 GAGATGGTTTGGGCATATTCAGT 58.790 43.478 0.00 0.00 0.00 3.41
3576 3594 2.281484 GCCACGCAAGGAAGGACA 60.281 61.111 0.00 0.00 46.39 4.02
3598 3616 2.618442 TGCGCATGTTGAGATGGATA 57.382 45.000 5.66 0.00 0.00 2.59
3697 3716 1.063114 AGGCAGGTTCTATAGGACGGT 60.063 52.381 5.05 0.00 0.00 4.83
3934 3955 4.818534 ATGTATTTTATCCTGCGCACAG 57.181 40.909 5.66 0.00 44.05 3.66
4093 4115 5.417811 AGAGAGCAGACAGTACAATGATTG 58.582 41.667 3.16 3.16 0.00 2.67
4272 4304 5.717119 ACAATTGAAAGATTAGCTTGCCAG 58.283 37.500 13.59 0.00 36.80 4.85
4419 4452 2.224606 AGCATGCCCAGAATATGAACG 58.775 47.619 15.66 0.00 0.00 3.95
4423 4456 3.483421 TCTCAAGCATGCCCAGAATATG 58.517 45.455 15.66 1.32 0.00 1.78
4581 4614 6.995686 ACATTGTATTCTACCAACACTGACAA 59.004 34.615 0.00 0.00 30.78 3.18
4585 4618 5.937540 TCCACATTGTATTCTACCAACACTG 59.062 40.000 0.00 0.00 32.05 3.66
4628 4661 5.722263 TCACATGTTCCAAGCATATTTTGG 58.278 37.500 0.00 8.78 45.17 3.28
4629 4662 7.655236 TTTCACATGTTCCAAGCATATTTTG 57.345 32.000 0.00 0.00 0.00 2.44
5292 5328 1.920574 CAGTTCGTACCTTCAGCATCG 59.079 52.381 0.00 0.00 0.00 3.84
5295 5331 0.679505 AGCAGTTCGTACCTTCAGCA 59.320 50.000 0.00 0.00 0.00 4.41
5629 5665 1.334869 CAACTTTTCACGAAGGCAGCT 59.665 47.619 0.00 0.00 0.00 4.24
5663 5699 8.283992 TCATTTATTTGCATGCAAGTTCAAAAG 58.716 29.630 30.01 21.26 37.24 2.27
5675 5711 7.919091 AGCATCAGTAACTCATTTATTTGCATG 59.081 33.333 0.00 0.00 0.00 4.06
5713 5749 9.045223 GCCAATCAAAGAAACATTTTCTTTACT 57.955 29.630 20.70 11.65 44.30 2.24
5852 5917 4.237724 CATGAGCGAGAAACAGAAGTACA 58.762 43.478 0.00 0.00 0.00 2.90
5856 5921 1.396301 GCCATGAGCGAGAAACAGAAG 59.604 52.381 0.00 0.00 0.00 2.85
5857 5922 1.442769 GCCATGAGCGAGAAACAGAA 58.557 50.000 0.00 0.00 0.00 3.02
5858 5923 0.391661 GGCCATGAGCGAGAAACAGA 60.392 55.000 0.00 0.00 45.17 3.41
5984 6052 1.141053 GGGTTATTCATCGAGCCCTGT 59.859 52.381 0.00 0.00 33.58 4.00
6053 6121 2.765689 AGCTGAGTGATAGGTAGCCT 57.234 50.000 0.00 0.00 37.71 4.58
6069 6137 4.582240 CAGGAAAAGAAGGTTTCTGAAGCT 59.418 41.667 4.26 0.00 45.04 3.74
6119 6187 5.042593 GCAAGTGTCAGATCAGAGTGATAG 58.957 45.833 0.00 0.00 37.20 2.08
6138 6206 2.426522 TGAGAACGGAAGGATTGCAAG 58.573 47.619 4.94 0.00 35.47 4.01
6140 6208 2.749076 CAATGAGAACGGAAGGATTGCA 59.251 45.455 0.00 0.00 35.47 4.08
6145 6213 1.974957 TGGTCAATGAGAACGGAAGGA 59.025 47.619 0.00 0.00 36.45 3.36
6146 6214 2.472695 TGGTCAATGAGAACGGAAGG 57.527 50.000 0.00 0.00 36.45 3.46
6156 6224 3.786368 TCATCACCTGTTGGTCAATGA 57.214 42.857 0.00 0.00 46.60 2.57
6178 6246 5.938125 AGTAACGGTGGCAATATATCCATTC 59.062 40.000 0.00 0.00 34.47 2.67
6190 6258 0.606604 GGAAGAGAGTAACGGTGGCA 59.393 55.000 0.00 0.00 0.00 4.92
6223 6291 3.179830 CACGTACATCAGGTTCAGCTAC 58.820 50.000 0.00 0.00 0.00 3.58
6227 6295 1.337728 TGCCACGTACATCAGGTTCAG 60.338 52.381 0.00 0.00 0.00 3.02
6228 6296 0.682292 TGCCACGTACATCAGGTTCA 59.318 50.000 0.00 0.00 0.00 3.18
6229 6297 1.665679 CATGCCACGTACATCAGGTTC 59.334 52.381 0.47 0.00 0.00 3.62
6230 6298 1.003118 ACATGCCACGTACATCAGGTT 59.997 47.619 0.47 0.00 0.00 3.50
6243 6331 6.278172 TGCTTCACATAATTTTACATGCCA 57.722 33.333 0.00 0.00 0.00 4.92
6250 6338 5.356751 ACGAGGCATGCTTCACATAATTTTA 59.643 36.000 27.01 0.00 36.64 1.52
6254 6342 2.923121 ACGAGGCATGCTTCACATAAT 58.077 42.857 27.01 4.56 36.64 1.28
6256 6344 2.401583 AACGAGGCATGCTTCACATA 57.598 45.000 27.01 0.00 36.64 2.29
6257 6345 2.009774 GTAACGAGGCATGCTTCACAT 58.990 47.619 27.01 15.39 40.66 3.21
6276 6364 9.101655 GTGGAATATACAGGTTAATTTACACGT 57.898 33.333 0.00 0.00 0.00 4.49
6277 6365 9.321562 AGTGGAATATACAGGTTAATTTACACG 57.678 33.333 0.00 0.00 30.97 4.49
6298 6390 3.007940 CCAGTTCCTGTACAATGAGTGGA 59.992 47.826 15.70 7.41 0.00 4.02
6320 6412 0.037232 CAGAGACCACGGAAGGAACC 60.037 60.000 0.00 0.00 0.00 3.62
6327 6419 6.014840 GGGATAATATTTACAGAGACCACGGA 60.015 42.308 0.00 0.00 0.00 4.69
6328 6420 6.164176 GGGATAATATTTACAGAGACCACGG 58.836 44.000 0.00 0.00 0.00 4.94
6329 6421 6.755206 TGGGATAATATTTACAGAGACCACG 58.245 40.000 0.00 0.00 0.00 4.94
6332 6424 8.598041 AGTGATGGGATAATATTTACAGAGACC 58.402 37.037 0.00 0.00 0.00 3.85
6385 6477 2.769539 CGGCAATAACATGGGCGCA 61.770 57.895 10.83 5.70 43.46 6.09
6386 6478 2.026014 CGGCAATAACATGGGCGC 59.974 61.111 0.00 0.00 43.46 6.53
6388 6480 1.319614 ACCACGGCAATAACATGGGC 61.320 55.000 0.00 0.00 34.56 5.36
6390 6482 2.992543 CAAAACCACGGCAATAACATGG 59.007 45.455 0.00 0.00 36.46 3.66
6391 6483 3.648009 ACAAAACCACGGCAATAACATG 58.352 40.909 0.00 0.00 0.00 3.21
6392 6484 4.329462 AACAAAACCACGGCAATAACAT 57.671 36.364 0.00 0.00 0.00 2.71
6393 6485 3.802948 AACAAAACCACGGCAATAACA 57.197 38.095 0.00 0.00 0.00 2.41
6394 6486 4.445052 GGTAAACAAAACCACGGCAATAAC 59.555 41.667 0.00 0.00 36.96 1.89
6395 6487 4.501058 GGGTAAACAAAACCACGGCAATAA 60.501 41.667 0.00 0.00 38.87 1.40
6396 6488 3.005578 GGGTAAACAAAACCACGGCAATA 59.994 43.478 0.00 0.00 38.87 1.90
6397 6489 2.224090 GGGTAAACAAAACCACGGCAAT 60.224 45.455 0.00 0.00 38.87 3.56
6399 6491 0.745468 GGGTAAACAAAACCACGGCA 59.255 50.000 0.00 0.00 38.87 5.69
6400 6492 1.034356 AGGGTAAACAAAACCACGGC 58.966 50.000 0.00 0.00 38.87 5.68
6401 6493 2.025898 ACAGGGTAAACAAAACCACGG 58.974 47.619 0.00 0.00 38.87 4.94
6402 6494 3.626670 TGTACAGGGTAAACAAAACCACG 59.373 43.478 0.00 0.00 38.87 4.94
6403 6495 4.398673 TGTGTACAGGGTAAACAAAACCAC 59.601 41.667 0.00 0.00 38.87 4.16
6405 6497 5.342433 GTTGTGTACAGGGTAAACAAAACC 58.658 41.667 12.37 0.00 35.99 3.27
6406 6498 5.125900 AGGTTGTGTACAGGGTAAACAAAAC 59.874 40.000 12.37 9.38 39.55 2.43
6407 6499 5.262804 AGGTTGTGTACAGGGTAAACAAAA 58.737 37.500 12.37 0.00 32.92 2.44
6408 6500 4.857679 AGGTTGTGTACAGGGTAAACAAA 58.142 39.130 12.37 0.00 32.92 2.83
6409 6501 4.506937 AGGTTGTGTACAGGGTAAACAA 57.493 40.909 7.80 7.80 0.00 2.83
6410 6502 4.164604 AGAAGGTTGTGTACAGGGTAAACA 59.835 41.667 0.00 0.00 0.00 2.83
6411 6503 4.711399 AGAAGGTTGTGTACAGGGTAAAC 58.289 43.478 0.00 0.00 0.00 2.01
6412 6504 5.376756 AAGAAGGTTGTGTACAGGGTAAA 57.623 39.130 0.00 0.00 0.00 2.01
6413 6505 5.127491 CAAAGAAGGTTGTGTACAGGGTAA 58.873 41.667 0.00 0.00 0.00 2.85
6414 6506 4.445162 CCAAAGAAGGTTGTGTACAGGGTA 60.445 45.833 0.00 0.00 0.00 3.69
6447 6550 4.335315 TGCACGGAATTATCATTCAAGGTC 59.665 41.667 2.21 0.00 40.77 3.85
6456 6559 7.757624 GGAGTTTAATTTTGCACGGAATTATCA 59.242 33.333 8.90 0.43 30.36 2.15
6457 6560 7.973944 AGGAGTTTAATTTTGCACGGAATTATC 59.026 33.333 8.90 5.55 30.36 1.75
6475 6578 4.761739 CCAACTCAGAATGCAAGGAGTTTA 59.238 41.667 17.57 0.00 45.52 2.01
6485 6588 2.818130 TTTTGGCCAACTCAGAATGC 57.182 45.000 20.35 0.00 34.76 3.56
6505 6608 3.439129 GCACGCCCTACTACTGAATTTTT 59.561 43.478 0.00 0.00 0.00 1.94
6506 6609 3.007635 GCACGCCCTACTACTGAATTTT 58.992 45.455 0.00 0.00 0.00 1.82
6509 6612 1.134788 GTGCACGCCCTACTACTGAAT 60.135 52.381 0.00 0.00 0.00 2.57
6510 6613 0.245539 GTGCACGCCCTACTACTGAA 59.754 55.000 0.00 0.00 0.00 3.02
6511 6614 0.611062 AGTGCACGCCCTACTACTGA 60.611 55.000 12.01 0.00 0.00 3.41
6512 6615 0.246635 AAGTGCACGCCCTACTACTG 59.753 55.000 12.01 0.00 0.00 2.74
6514 6617 0.037605 ACAAGTGCACGCCCTACTAC 60.038 55.000 12.01 0.00 0.00 2.73
6516 6619 0.179029 AAACAAGTGCACGCCCTACT 60.179 50.000 12.01 0.00 0.00 2.57
6517 6620 0.666374 AAAACAAGTGCACGCCCTAC 59.334 50.000 12.01 0.00 0.00 3.18
6520 6623 1.601914 CCTAAAAACAAGTGCACGCCC 60.602 52.381 12.01 0.00 0.00 6.13
6521 6624 1.066454 ACCTAAAAACAAGTGCACGCC 59.934 47.619 12.01 0.00 0.00 5.68
6522 6625 2.381589 GACCTAAAAACAAGTGCACGC 58.618 47.619 12.01 0.00 0.00 5.34
6523 6626 2.031191 ACGACCTAAAAACAAGTGCACG 59.969 45.455 12.01 0.00 0.00 5.34
6524 6627 3.685836 ACGACCTAAAAACAAGTGCAC 57.314 42.857 9.40 9.40 0.00 4.57
6527 6630 7.486551 TCAAAATCAACGACCTAAAAACAAGTG 59.513 33.333 0.00 0.00 0.00 3.16
6528 6631 7.486870 GTCAAAATCAACGACCTAAAAACAAGT 59.513 33.333 0.00 0.00 0.00 3.16
6529 6632 7.700656 AGTCAAAATCAACGACCTAAAAACAAG 59.299 33.333 0.00 0.00 0.00 3.16
6530 6633 7.540299 AGTCAAAATCAACGACCTAAAAACAA 58.460 30.769 0.00 0.00 0.00 2.83
6531 6634 7.090953 AGTCAAAATCAACGACCTAAAAACA 57.909 32.000 0.00 0.00 0.00 2.83
6532 6635 9.673454 ATTAGTCAAAATCAACGACCTAAAAAC 57.327 29.630 0.00 0.00 0.00 2.43
6563 7170 7.467557 TCGTATTCGAACAAAAGTTACACTT 57.532 32.000 0.00 0.00 43.34 3.16
6579 7300 5.223382 AGCTAATCACTGGATTCGTATTCG 58.777 41.667 0.00 0.00 42.66 3.34
6585 7306 4.686972 TCAGAAGCTAATCACTGGATTCG 58.313 43.478 0.00 0.00 42.66 3.34
6593 7314 8.839310 ATTATGTACCATCAGAAGCTAATCAC 57.161 34.615 0.00 0.00 0.00 3.06
6598 7319 8.870116 ACATGTATTATGTACCATCAGAAGCTA 58.130 33.333 0.00 0.00 0.00 3.32
6599 7320 7.658982 CACATGTATTATGTACCATCAGAAGCT 59.341 37.037 0.00 0.00 0.00 3.74
6604 7325 6.930722 TGAGCACATGTATTATGTACCATCAG 59.069 38.462 0.00 0.00 0.00 2.90
6606 7327 6.931281 ACTGAGCACATGTATTATGTACCATC 59.069 38.462 0.00 0.00 0.00 3.51
6613 7396 6.283694 AGGTGTACTGAGCACATGTATTATG 58.716 40.000 0.00 0.00 38.51 1.90
6616 7399 4.826274 AGGTGTACTGAGCACATGTATT 57.174 40.909 0.00 0.00 38.51 1.89
6629 7412 2.341101 CGCTCCGGTCAGGTGTACT 61.341 63.158 0.00 0.00 41.99 2.73
6631 7414 2.034532 TCGCTCCGGTCAGGTGTA 59.965 61.111 0.00 0.00 41.99 2.90
6643 7431 0.320771 TCTTCAAACCCAGCTCGCTC 60.321 55.000 0.00 0.00 0.00 5.03
6644 7432 0.108585 TTCTTCAAACCCAGCTCGCT 59.891 50.000 0.00 0.00 0.00 4.93
6645 7433 0.951558 TTTCTTCAAACCCAGCTCGC 59.048 50.000 0.00 0.00 0.00 5.03
6646 7434 3.708563 TTTTTCTTCAAACCCAGCTCG 57.291 42.857 0.00 0.00 0.00 5.03
6670 7458 5.704888 TGTATTTGGCGTCTTAAATGTTGG 58.295 37.500 0.00 0.00 0.00 3.77
6728 7582 5.843673 TCGCATATTGCTTTTTATCCCAA 57.156 34.783 0.00 0.00 42.25 4.12
6729 7583 5.359576 ACTTCGCATATTGCTTTTTATCCCA 59.640 36.000 0.00 0.00 42.25 4.37
6730 7584 5.831997 ACTTCGCATATTGCTTTTTATCCC 58.168 37.500 0.00 0.00 42.25 3.85
6731 7585 7.639945 AGTACTTCGCATATTGCTTTTTATCC 58.360 34.615 0.00 0.00 42.25 2.59
6735 7589 9.289303 CAAATAGTACTTCGCATATTGCTTTTT 57.711 29.630 0.00 0.00 42.25 1.94
6736 7590 8.673711 TCAAATAGTACTTCGCATATTGCTTTT 58.326 29.630 0.00 0.00 42.25 2.27
6737 7591 8.208718 TCAAATAGTACTTCGCATATTGCTTT 57.791 30.769 0.00 0.00 42.25 3.51
6749 7603 5.727434 TCCCTCCGTTTCAAATAGTACTTC 58.273 41.667 0.00 0.00 0.00 3.01
6759 7616 0.034896 GAGCACTCCCTCCGTTTCAA 59.965 55.000 0.00 0.00 0.00 2.69
6782 7639 6.757010 TCGCCAGAATTAGTCTTATCAAGAAC 59.243 38.462 0.00 0.00 39.67 3.01
6797 7654 1.317613 TTTGTGCAGTCGCCAGAATT 58.682 45.000 0.00 0.00 37.32 2.17
6825 7683 3.804325 GGAGCTTCTTTTGCTTGGTTTTC 59.196 43.478 0.00 0.00 41.30 2.29
6834 7692 6.743575 TTATTCAGTAGGAGCTTCTTTTGC 57.256 37.500 0.00 0.00 0.00 3.68
6837 7695 5.351740 GCGTTTATTCAGTAGGAGCTTCTTT 59.648 40.000 0.00 0.00 0.00 2.52
6848 7706 2.901249 GCCTCTGGCGTTTATTCAGTA 58.099 47.619 0.00 0.00 39.62 2.74
6879 7737 2.820037 GAGGGGGCTTCGCTTTCG 60.820 66.667 0.00 0.00 38.88 3.46
6893 7751 0.256464 AGAGACTGTAGACGGGGAGG 59.744 60.000 0.00 0.00 0.00 4.30
6899 7757 0.097325 GCGTGGAGAGACTGTAGACG 59.903 60.000 0.00 0.00 0.00 4.18
6900 7758 0.097325 CGCGTGGAGAGACTGTAGAC 59.903 60.000 0.00 0.00 0.00 2.59
7181 8063 0.539518 GAAGAGAGGAGGAAGGTGGC 59.460 60.000 0.00 0.00 0.00 5.01
7187 8069 3.598782 AGGGTAAGAGAAGAGAGGAGGAA 59.401 47.826 0.00 0.00 0.00 3.36
7193 8078 4.499019 GCAATCGAGGGTAAGAGAAGAGAG 60.499 50.000 0.00 0.00 0.00 3.20
7194 8079 3.381908 GCAATCGAGGGTAAGAGAAGAGA 59.618 47.826 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.