Multiple sequence alignment - TraesCS7A01G383600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G383600 chr7A 100.000 4097 0 0 1 4097 558750855 558754951 0.000000e+00 7566.0
1 TraesCS7A01G383600 chr7A 96.232 345 12 1 8 351 646466234 646466578 7.690000e-157 564.0
2 TraesCS7A01G383600 chr7A 95.137 329 15 1 17 344 566095712 566095384 6.070000e-143 518.0
3 TraesCS7A01G383600 chr7B 94.365 3141 140 21 338 3466 521612037 521615152 0.000000e+00 4785.0
4 TraesCS7A01G383600 chr7B 92.097 620 33 6 3480 4097 521615227 521615832 0.000000e+00 859.0
5 TraesCS7A01G383600 chr7B 97.436 39 1 0 3477 3515 69587477 69587515 2.640000e-07 67.6
6 TraesCS7A01G383600 chr7D 93.726 3156 123 32 338 3464 492216053 492219162 0.000000e+00 4662.0
7 TraesCS7A01G383600 chr7D 93.053 619 41 2 3479 4097 492219252 492219868 0.000000e+00 904.0
8 TraesCS7A01G383600 chr3A 95.601 341 10 4 8 345 83767012 83766674 3.600000e-150 542.0
9 TraesCS7A01G383600 chr3A 97.436 39 1 0 3477 3515 74237187 74237225 2.640000e-07 67.6
10 TraesCS7A01G383600 chr2A 94.372 231 13 0 115 345 128722133 128722363 5.040000e-94 355.0
11 TraesCS7A01G383600 chr2A 85.761 309 24 8 57 345 235338010 235337702 3.980000e-80 309.0
12 TraesCS7A01G383600 chr2B 93.868 212 13 0 136 347 622481690 622481479 1.840000e-83 320.0
13 TraesCS7A01G383600 chr5B 83.702 362 32 13 8 345 147460094 147459736 2.380000e-82 316.0
14 TraesCS7A01G383600 chr5B 92.308 39 3 0 3477 3515 247256180 247256218 5.720000e-04 56.5
15 TraesCS7A01G383600 chr1B 88.976 127 12 2 220 345 96460479 96460604 5.480000e-34 156.0
16 TraesCS7A01G383600 chr1B 94.318 88 5 0 136 223 96460120 96460207 7.140000e-28 135.0
17 TraesCS7A01G383600 chr5A 88.496 113 11 2 235 345 696843689 696843801 7.140000e-28 135.0
18 TraesCS7A01G383600 chr5D 94.872 39 2 0 3477 3515 449292839 449292801 1.230000e-05 62.1
19 TraesCS7A01G383600 chr1A 94.872 39 2 0 3477 3515 460934516 460934478 1.230000e-05 62.1
20 TraesCS7A01G383600 chr2D 88.000 50 4 2 3477 3525 594403894 594403846 1.590000e-04 58.4
21 TraesCS7A01G383600 chr4A 87.755 49 4 2 3477 3524 565436162 565436115 5.720000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G383600 chr7A 558750855 558754951 4096 False 7566 7566 100.0000 1 4097 1 chr7A.!!$F1 4096
1 TraesCS7A01G383600 chr7B 521612037 521615832 3795 False 2822 4785 93.2310 338 4097 2 chr7B.!!$F2 3759
2 TraesCS7A01G383600 chr7D 492216053 492219868 3815 False 2783 4662 93.3895 338 4097 2 chr7D.!!$F1 3759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.028770 TGCAGAGCGGTTTGTTTTCG 59.971 50.0 7.01 0.0 0.0 3.46 F
200 201 0.028902 GCAGAGCGGTTTGTTTTCGT 59.971 50.0 7.01 0.0 0.0 3.85 F
961 975 0.036732 TGGATCAGAGCCCACAACAC 59.963 55.0 1.14 0.0 0.0 3.32 F
2042 2086 0.176680 CGCTGAAGTATCCCTGTGCT 59.823 55.0 0.00 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1485 0.529337 TACGACGACCTAGAGGCTCG 60.529 60.000 9.22 14.84 41.28 5.03 R
1729 1771 1.130373 TCACATTCCGCGCAAGATTTC 59.870 47.619 8.75 0.00 43.02 2.17 R
2703 2747 1.579964 CTGAAAGCACGCCATCAGCA 61.580 55.000 8.26 0.00 44.04 4.41 R
3322 3378 0.390860 GTATCCACGGCAGATGCTCT 59.609 55.000 4.59 0.00 41.70 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 2.686106 GGGCGTTGGGAGGGAGTA 60.686 66.667 0.00 0.00 0.00 2.59
132 133 2.582978 GGCGTTGGGAGGGAGTAC 59.417 66.667 0.00 0.00 0.00 2.73
133 134 1.988406 GGCGTTGGGAGGGAGTACT 60.988 63.158 0.00 0.00 0.00 2.73
134 135 1.218316 GCGTTGGGAGGGAGTACTG 59.782 63.158 0.00 0.00 0.00 2.74
135 136 1.898154 CGTTGGGAGGGAGTACTGG 59.102 63.158 0.00 0.00 0.00 4.00
136 137 0.903454 CGTTGGGAGGGAGTACTGGT 60.903 60.000 0.00 0.00 0.00 4.00
137 138 1.359168 GTTGGGAGGGAGTACTGGTT 58.641 55.000 0.00 0.00 0.00 3.67
138 139 1.003233 GTTGGGAGGGAGTACTGGTTG 59.997 57.143 0.00 0.00 0.00 3.77
139 140 0.546747 TGGGAGGGAGTACTGGTTGG 60.547 60.000 0.00 0.00 0.00 3.77
140 141 1.272554 GGGAGGGAGTACTGGTTGGG 61.273 65.000 0.00 0.00 0.00 4.12
141 142 0.252558 GGAGGGAGTACTGGTTGGGA 60.253 60.000 0.00 0.00 0.00 4.37
142 143 1.196012 GAGGGAGTACTGGTTGGGAG 58.804 60.000 0.00 0.00 0.00 4.30
143 144 0.252742 AGGGAGTACTGGTTGGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
144 145 0.252558 GGGAGTACTGGTTGGGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
145 146 1.196012 GGAGTACTGGTTGGGAGGAG 58.804 60.000 0.00 0.00 0.00 3.69
146 147 1.196012 GAGTACTGGTTGGGAGGAGG 58.804 60.000 0.00 0.00 0.00 4.30
147 148 0.790993 AGTACTGGTTGGGAGGAGGA 59.209 55.000 0.00 0.00 0.00 3.71
148 149 1.196012 GTACTGGTTGGGAGGAGGAG 58.804 60.000 0.00 0.00 0.00 3.69
149 150 1.089978 TACTGGTTGGGAGGAGGAGA 58.910 55.000 0.00 0.00 0.00 3.71
150 151 0.252467 ACTGGTTGGGAGGAGGAGAG 60.252 60.000 0.00 0.00 0.00 3.20
151 152 0.252467 CTGGTTGGGAGGAGGAGAGT 60.252 60.000 0.00 0.00 0.00 3.24
152 153 0.545309 TGGTTGGGAGGAGGAGAGTG 60.545 60.000 0.00 0.00 0.00 3.51
153 154 1.268283 GGTTGGGAGGAGGAGAGTGG 61.268 65.000 0.00 0.00 0.00 4.00
154 155 1.081092 TTGGGAGGAGGAGAGTGGG 59.919 63.158 0.00 0.00 0.00 4.61
155 156 1.452226 TTGGGAGGAGGAGAGTGGGA 61.452 60.000 0.00 0.00 0.00 4.37
156 157 1.392534 GGGAGGAGGAGAGTGGGAA 59.607 63.158 0.00 0.00 0.00 3.97
157 158 0.252742 GGGAGGAGGAGAGTGGGAAA 60.253 60.000 0.00 0.00 0.00 3.13
158 159 1.199615 GGAGGAGGAGAGTGGGAAAG 58.800 60.000 0.00 0.00 0.00 2.62
159 160 1.199615 GAGGAGGAGAGTGGGAAAGG 58.800 60.000 0.00 0.00 0.00 3.11
160 161 0.494095 AGGAGGAGAGTGGGAAAGGT 59.506 55.000 0.00 0.00 0.00 3.50
161 162 0.906066 GGAGGAGAGTGGGAAAGGTC 59.094 60.000 0.00 0.00 0.00 3.85
162 163 0.533032 GAGGAGAGTGGGAAAGGTCG 59.467 60.000 0.00 0.00 0.00 4.79
163 164 0.178929 AGGAGAGTGGGAAAGGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
164 165 0.037232 GGAGAGTGGGAAAGGTCGTG 60.037 60.000 0.00 0.00 0.00 4.35
165 166 0.670854 GAGAGTGGGAAAGGTCGTGC 60.671 60.000 0.00 0.00 0.00 5.34
166 167 2.027625 GAGTGGGAAAGGTCGTGCG 61.028 63.158 0.00 0.00 0.00 5.34
167 168 3.047877 GTGGGAAAGGTCGTGCGG 61.048 66.667 0.00 0.00 0.00 5.69
168 169 4.323477 TGGGAAAGGTCGTGCGGG 62.323 66.667 0.00 0.00 0.00 6.13
186 187 4.126390 CGTGCGCGTTCTGCAGAG 62.126 66.667 17.43 7.60 46.97 3.35
187 188 4.436448 GTGCGCGTTCTGCAGAGC 62.436 66.667 19.69 19.69 46.97 4.09
191 192 3.044305 GCGTTCTGCAGAGCGGTT 61.044 61.111 40.98 0.00 46.50 4.44
192 193 2.607892 GCGTTCTGCAGAGCGGTTT 61.608 57.895 40.98 0.00 46.50 3.27
193 194 1.205064 CGTTCTGCAGAGCGGTTTG 59.795 57.895 36.37 15.06 43.49 2.93
194 195 1.498865 CGTTCTGCAGAGCGGTTTGT 61.499 55.000 36.37 0.00 43.49 2.83
195 196 0.663153 GTTCTGCAGAGCGGTTTGTT 59.337 50.000 17.43 0.00 36.18 2.83
196 197 1.065551 GTTCTGCAGAGCGGTTTGTTT 59.934 47.619 17.43 0.00 36.18 2.83
197 198 1.388547 TCTGCAGAGCGGTTTGTTTT 58.611 45.000 13.74 0.00 36.18 2.43
198 199 1.333619 TCTGCAGAGCGGTTTGTTTTC 59.666 47.619 13.74 0.00 36.18 2.29
199 200 0.028770 TGCAGAGCGGTTTGTTTTCG 59.971 50.000 7.01 0.00 0.00 3.46
200 201 0.028902 GCAGAGCGGTTTGTTTTCGT 59.971 50.000 7.01 0.00 0.00 3.85
201 202 1.741993 CAGAGCGGTTTGTTTTCGTG 58.258 50.000 0.00 0.00 0.00 4.35
202 203 1.329292 CAGAGCGGTTTGTTTTCGTGA 59.671 47.619 0.00 0.00 0.00 4.35
203 204 2.032030 CAGAGCGGTTTGTTTTCGTGAT 60.032 45.455 0.00 0.00 0.00 3.06
204 205 2.616842 AGAGCGGTTTGTTTTCGTGATT 59.383 40.909 0.00 0.00 0.00 2.57
205 206 3.810941 AGAGCGGTTTGTTTTCGTGATTA 59.189 39.130 0.00 0.00 0.00 1.75
206 207 4.454504 AGAGCGGTTTGTTTTCGTGATTAT 59.545 37.500 0.00 0.00 0.00 1.28
207 208 5.640357 AGAGCGGTTTGTTTTCGTGATTATA 59.360 36.000 0.00 0.00 0.00 0.98
208 209 5.864986 AGCGGTTTGTTTTCGTGATTATAG 58.135 37.500 0.00 0.00 0.00 1.31
209 210 4.494410 GCGGTTTGTTTTCGTGATTATAGC 59.506 41.667 0.00 0.00 0.00 2.97
210 211 4.721977 CGGTTTGTTTTCGTGATTATAGCG 59.278 41.667 0.00 0.00 0.00 4.26
211 212 5.444877 CGGTTTGTTTTCGTGATTATAGCGA 60.445 40.000 0.00 0.00 0.00 4.93
212 213 6.483687 GGTTTGTTTTCGTGATTATAGCGAT 58.516 36.000 0.00 0.00 34.52 4.58
213 214 6.410914 GGTTTGTTTTCGTGATTATAGCGATG 59.589 38.462 0.00 0.00 34.52 3.84
214 215 5.651172 TGTTTTCGTGATTATAGCGATGG 57.349 39.130 0.00 0.00 34.52 3.51
215 216 5.353111 TGTTTTCGTGATTATAGCGATGGA 58.647 37.500 0.00 0.00 34.52 3.41
216 217 5.462068 TGTTTTCGTGATTATAGCGATGGAG 59.538 40.000 0.00 0.00 34.52 3.86
217 218 3.850122 TCGTGATTATAGCGATGGAGG 57.150 47.619 0.00 0.00 0.00 4.30
218 219 3.418047 TCGTGATTATAGCGATGGAGGA 58.582 45.455 0.00 0.00 0.00 3.71
219 220 4.017126 TCGTGATTATAGCGATGGAGGAT 58.983 43.478 0.00 0.00 0.00 3.24
220 221 4.462834 TCGTGATTATAGCGATGGAGGATT 59.537 41.667 0.00 0.00 0.00 3.01
221 222 5.650703 TCGTGATTATAGCGATGGAGGATTA 59.349 40.000 0.00 0.00 0.00 1.75
222 223 5.974158 CGTGATTATAGCGATGGAGGATTAG 59.026 44.000 0.00 0.00 0.00 1.73
223 224 6.404844 CGTGATTATAGCGATGGAGGATTAGT 60.405 42.308 0.00 0.00 0.00 2.24
224 225 6.754209 GTGATTATAGCGATGGAGGATTAGTG 59.246 42.308 0.00 0.00 0.00 2.74
225 226 5.661056 TTATAGCGATGGAGGATTAGTGG 57.339 43.478 0.00 0.00 0.00 4.00
226 227 1.051812 AGCGATGGAGGATTAGTGGG 58.948 55.000 0.00 0.00 0.00 4.61
227 228 0.759346 GCGATGGAGGATTAGTGGGT 59.241 55.000 0.00 0.00 0.00 4.51
228 229 1.141053 GCGATGGAGGATTAGTGGGTT 59.859 52.381 0.00 0.00 0.00 4.11
229 230 2.838736 CGATGGAGGATTAGTGGGTTG 58.161 52.381 0.00 0.00 0.00 3.77
230 231 2.434336 CGATGGAGGATTAGTGGGTTGA 59.566 50.000 0.00 0.00 0.00 3.18
231 232 3.071602 CGATGGAGGATTAGTGGGTTGAT 59.928 47.826 0.00 0.00 0.00 2.57
232 233 4.444876 CGATGGAGGATTAGTGGGTTGATT 60.445 45.833 0.00 0.00 0.00 2.57
233 234 4.235079 TGGAGGATTAGTGGGTTGATTG 57.765 45.455 0.00 0.00 0.00 2.67
234 235 3.053693 TGGAGGATTAGTGGGTTGATTGG 60.054 47.826 0.00 0.00 0.00 3.16
235 236 2.952310 GAGGATTAGTGGGTTGATTGGC 59.048 50.000 0.00 0.00 0.00 4.52
236 237 1.676006 GGATTAGTGGGTTGATTGGCG 59.324 52.381 0.00 0.00 0.00 5.69
237 238 2.365582 GATTAGTGGGTTGATTGGCGT 58.634 47.619 0.00 0.00 0.00 5.68
238 239 1.529226 TTAGTGGGTTGATTGGCGTG 58.471 50.000 0.00 0.00 0.00 5.34
239 240 0.398696 TAGTGGGTTGATTGGCGTGT 59.601 50.000 0.00 0.00 0.00 4.49
240 241 0.467290 AGTGGGTTGATTGGCGTGTT 60.467 50.000 0.00 0.00 0.00 3.32
241 242 0.387565 GTGGGTTGATTGGCGTGTTT 59.612 50.000 0.00 0.00 0.00 2.83
242 243 0.387202 TGGGTTGATTGGCGTGTTTG 59.613 50.000 0.00 0.00 0.00 2.93
243 244 0.387565 GGGTTGATTGGCGTGTTTGT 59.612 50.000 0.00 0.00 0.00 2.83
244 245 1.202475 GGGTTGATTGGCGTGTTTGTT 60.202 47.619 0.00 0.00 0.00 2.83
245 246 1.857837 GGTTGATTGGCGTGTTTGTTG 59.142 47.619 0.00 0.00 0.00 3.33
246 247 1.257675 GTTGATTGGCGTGTTTGTTGC 59.742 47.619 0.00 0.00 0.00 4.17
247 248 0.457443 TGATTGGCGTGTTTGTTGCA 59.543 45.000 0.00 0.00 0.00 4.08
248 249 1.068281 TGATTGGCGTGTTTGTTGCAT 59.932 42.857 0.00 0.00 0.00 3.96
249 250 1.720852 GATTGGCGTGTTTGTTGCATC 59.279 47.619 0.00 0.00 0.00 3.91
250 251 0.457443 TTGGCGTGTTTGTTGCATCA 59.543 45.000 0.00 0.00 0.00 3.07
251 252 0.457443 TGGCGTGTTTGTTGCATCAA 59.543 45.000 6.10 6.10 0.00 2.57
252 253 1.134995 TGGCGTGTTTGTTGCATCAAA 60.135 42.857 17.00 17.00 35.36 2.69
261 262 5.825905 TTTGTTGCATCAAACATCGAATG 57.174 34.783 17.00 0.00 39.68 2.67
262 263 4.762956 TGTTGCATCAAACATCGAATGA 57.237 36.364 0.00 0.00 35.16 2.57
263 264 5.313520 TGTTGCATCAAACATCGAATGAT 57.686 34.783 0.00 0.00 35.16 2.45
264 265 5.712004 TGTTGCATCAAACATCGAATGATT 58.288 33.333 0.00 0.00 35.16 2.57
265 266 6.850555 TGTTGCATCAAACATCGAATGATTA 58.149 32.000 0.00 0.00 35.16 1.75
266 267 7.311408 TGTTGCATCAAACATCGAATGATTAA 58.689 30.769 0.00 0.00 35.16 1.40
267 268 7.485595 TGTTGCATCAAACATCGAATGATTAAG 59.514 33.333 0.00 0.00 35.16 1.85
268 269 6.497437 TGCATCAAACATCGAATGATTAAGG 58.503 36.000 0.00 0.00 31.65 2.69
269 270 5.916883 GCATCAAACATCGAATGATTAAGGG 59.083 40.000 0.00 0.00 31.65 3.95
270 271 6.460123 GCATCAAACATCGAATGATTAAGGGT 60.460 38.462 0.00 0.00 31.65 4.34
271 272 6.677781 TCAAACATCGAATGATTAAGGGTC 57.322 37.500 0.00 0.00 30.49 4.46
272 273 6.176896 TCAAACATCGAATGATTAAGGGTCA 58.823 36.000 0.00 0.00 30.49 4.02
273 274 6.828273 TCAAACATCGAATGATTAAGGGTCAT 59.172 34.615 0.00 0.00 37.91 3.06
274 275 7.339212 TCAAACATCGAATGATTAAGGGTCATT 59.661 33.333 3.04 3.04 46.07 2.57
275 276 8.620416 CAAACATCGAATGATTAAGGGTCATTA 58.380 33.333 3.36 0.00 44.10 1.90
276 277 7.969536 ACATCGAATGATTAAGGGTCATTAG 57.030 36.000 3.36 4.14 44.10 1.73
277 278 7.735917 ACATCGAATGATTAAGGGTCATTAGA 58.264 34.615 12.52 12.52 45.28 2.10
279 280 9.224267 CATCGAATGATTAAGGGTCATTAGATT 57.776 33.333 16.71 6.44 46.67 2.40
280 281 9.799106 ATCGAATGATTAAGGGTCATTAGATTT 57.201 29.630 14.88 2.51 46.67 2.17
281 282 9.627123 TCGAATGATTAAGGGTCATTAGATTTT 57.373 29.630 8.25 0.00 44.10 1.82
282 283 9.669353 CGAATGATTAAGGGTCATTAGATTTTG 57.331 33.333 3.36 0.00 44.10 2.44
286 287 9.527157 TGATTAAGGGTCATTAGATTTTGTTGA 57.473 29.630 0.00 0.00 0.00 3.18
289 290 6.780457 AGGGTCATTAGATTTTGTTGATGG 57.220 37.500 0.00 0.00 0.00 3.51
290 291 6.493166 AGGGTCATTAGATTTTGTTGATGGA 58.507 36.000 0.00 0.00 0.00 3.41
291 292 7.128077 AGGGTCATTAGATTTTGTTGATGGAT 58.872 34.615 0.00 0.00 0.00 3.41
292 293 7.069085 AGGGTCATTAGATTTTGTTGATGGATG 59.931 37.037 0.00 0.00 0.00 3.51
293 294 7.205297 GGTCATTAGATTTTGTTGATGGATGG 58.795 38.462 0.00 0.00 0.00 3.51
294 295 7.068593 GGTCATTAGATTTTGTTGATGGATGGA 59.931 37.037 0.00 0.00 0.00 3.41
295 296 8.636213 GTCATTAGATTTTGTTGATGGATGGAT 58.364 33.333 0.00 0.00 0.00 3.41
296 297 8.853126 TCATTAGATTTTGTTGATGGATGGATC 58.147 33.333 0.00 0.00 0.00 3.36
297 298 8.857098 CATTAGATTTTGTTGATGGATGGATCT 58.143 33.333 0.00 0.00 0.00 2.75
298 299 6.710597 AGATTTTGTTGATGGATGGATCTG 57.289 37.500 0.00 0.00 0.00 2.90
299 300 6.429151 AGATTTTGTTGATGGATGGATCTGA 58.571 36.000 0.00 0.00 0.00 3.27
300 301 7.067421 AGATTTTGTTGATGGATGGATCTGAT 58.933 34.615 0.00 0.00 0.00 2.90
301 302 7.563924 AGATTTTGTTGATGGATGGATCTGATT 59.436 33.333 0.00 0.00 0.00 2.57
302 303 6.459670 TTTGTTGATGGATGGATCTGATTG 57.540 37.500 0.00 0.00 0.00 2.67
303 304 5.120054 TGTTGATGGATGGATCTGATTGT 57.880 39.130 0.00 0.00 0.00 2.71
304 305 5.512298 TGTTGATGGATGGATCTGATTGTT 58.488 37.500 0.00 0.00 0.00 2.83
305 306 5.953548 TGTTGATGGATGGATCTGATTGTTT 59.046 36.000 0.00 0.00 0.00 2.83
306 307 6.127563 TGTTGATGGATGGATCTGATTGTTTG 60.128 38.462 0.00 0.00 0.00 2.93
307 308 4.891168 TGATGGATGGATCTGATTGTTTGG 59.109 41.667 0.00 0.00 0.00 3.28
308 309 4.320546 TGGATGGATCTGATTGTTTGGT 57.679 40.909 0.00 0.00 0.00 3.67
309 310 4.676109 TGGATGGATCTGATTGTTTGGTT 58.324 39.130 0.00 0.00 0.00 3.67
310 311 5.085920 TGGATGGATCTGATTGTTTGGTTT 58.914 37.500 0.00 0.00 0.00 3.27
311 312 5.543405 TGGATGGATCTGATTGTTTGGTTTT 59.457 36.000 0.00 0.00 0.00 2.43
312 313 6.101997 GGATGGATCTGATTGTTTGGTTTTC 58.898 40.000 0.00 0.00 0.00 2.29
313 314 5.467035 TGGATCTGATTGTTTGGTTTTCC 57.533 39.130 0.00 0.00 41.14 3.13
314 315 4.022416 TGGATCTGATTGTTTGGTTTTCCG 60.022 41.667 0.00 0.00 44.36 4.30
315 316 3.363341 TCTGATTGTTTGGTTTTCCGC 57.637 42.857 0.00 0.00 44.36 5.54
316 317 2.955660 TCTGATTGTTTGGTTTTCCGCT 59.044 40.909 0.00 0.00 44.36 5.52
317 318 3.004315 TCTGATTGTTTGGTTTTCCGCTC 59.996 43.478 0.00 0.00 44.36 5.03
318 319 2.955660 TGATTGTTTGGTTTTCCGCTCT 59.044 40.909 0.00 0.00 44.36 4.09
319 320 3.004315 TGATTGTTTGGTTTTCCGCTCTC 59.996 43.478 0.00 0.00 44.36 3.20
320 321 2.341846 TGTTTGGTTTTCCGCTCTCT 57.658 45.000 0.00 0.00 44.36 3.10
321 322 2.650322 TGTTTGGTTTTCCGCTCTCTT 58.350 42.857 0.00 0.00 44.36 2.85
322 323 3.020984 TGTTTGGTTTTCCGCTCTCTTT 58.979 40.909 0.00 0.00 44.36 2.52
323 324 3.445805 TGTTTGGTTTTCCGCTCTCTTTT 59.554 39.130 0.00 0.00 44.36 2.27
324 325 4.081917 TGTTTGGTTTTCCGCTCTCTTTTT 60.082 37.500 0.00 0.00 44.36 1.94
325 326 3.982576 TGGTTTTCCGCTCTCTTTTTC 57.017 42.857 0.00 0.00 44.36 2.29
326 327 3.551846 TGGTTTTCCGCTCTCTTTTTCT 58.448 40.909 0.00 0.00 44.36 2.52
327 328 3.951680 TGGTTTTCCGCTCTCTTTTTCTT 59.048 39.130 0.00 0.00 44.36 2.52
328 329 4.401202 TGGTTTTCCGCTCTCTTTTTCTTT 59.599 37.500 0.00 0.00 44.36 2.52
329 330 5.105513 TGGTTTTCCGCTCTCTTTTTCTTTT 60.106 36.000 0.00 0.00 44.36 2.27
330 331 6.095720 TGGTTTTCCGCTCTCTTTTTCTTTTA 59.904 34.615 0.00 0.00 44.36 1.52
331 332 7.145985 GGTTTTCCGCTCTCTTTTTCTTTTAT 58.854 34.615 0.00 0.00 0.00 1.40
332 333 8.294577 GGTTTTCCGCTCTCTTTTTCTTTTATA 58.705 33.333 0.00 0.00 0.00 0.98
333 334 9.331106 GTTTTCCGCTCTCTTTTTCTTTTATAG 57.669 33.333 0.00 0.00 0.00 1.31
334 335 7.611213 TTCCGCTCTCTTTTTCTTTTATAGG 57.389 36.000 0.00 0.00 0.00 2.57
335 336 6.942976 TCCGCTCTCTTTTTCTTTTATAGGA 58.057 36.000 0.00 0.00 0.00 2.94
336 337 7.042335 TCCGCTCTCTTTTTCTTTTATAGGAG 58.958 38.462 0.00 0.00 0.00 3.69
337 338 6.819146 CCGCTCTCTTTTTCTTTTATAGGAGT 59.181 38.462 0.00 0.00 0.00 3.85
338 339 7.980099 CCGCTCTCTTTTTCTTTTATAGGAGTA 59.020 37.037 0.00 0.00 0.00 2.59
339 340 9.026074 CGCTCTCTTTTTCTTTTATAGGAGTAG 57.974 37.037 0.00 0.00 0.00 2.57
340 341 9.878667 GCTCTCTTTTTCTTTTATAGGAGTAGT 57.121 33.333 0.00 0.00 0.00 2.73
381 382 6.586082 ACTTGTCATCAAACAACTCAAACAAC 59.414 34.615 0.00 0.00 35.39 3.32
396 397 6.713450 ACTCAAACAACATCCCTAACGTAAAT 59.287 34.615 0.00 0.00 0.00 1.40
430 431 5.123820 CCGATTTCTTGATGAGTTTAAGGCA 59.876 40.000 0.00 0.00 0.00 4.75
464 465 5.700832 GGCCTTATTTTTGGGAAACTTCAAG 59.299 40.000 0.00 0.00 0.00 3.02
480 481 2.305928 TCAAGGGTGTTCATGTTGTGG 58.694 47.619 0.00 0.00 0.00 4.17
516 517 4.838986 ACTAAGCTAGGTTGTTCTTCCTCA 59.161 41.667 17.34 0.00 35.51 3.86
573 574 1.607509 CCTCTCATGGCTAATGGCTCG 60.608 57.143 0.00 0.00 41.46 5.03
574 575 1.069823 CTCTCATGGCTAATGGCTCGT 59.930 52.381 0.00 0.00 41.46 4.18
603 605 0.730840 CATCAGCTTCGCTTGCATGA 59.269 50.000 3.33 0.00 36.40 3.07
616 618 4.164294 GCTTGCATGAGTCAAAGTCAATC 58.836 43.478 3.33 0.00 30.32 2.67
633 635 0.037326 ATCGTCGCACTTGTCCACAT 60.037 50.000 0.00 0.00 0.00 3.21
634 636 0.666274 TCGTCGCACTTGTCCACATC 60.666 55.000 0.00 0.00 0.00 3.06
635 637 1.781555 GTCGCACTTGTCCACATCG 59.218 57.895 0.00 0.00 0.00 3.84
636 638 0.944311 GTCGCACTTGTCCACATCGT 60.944 55.000 0.00 0.00 0.00 3.73
637 639 0.666274 TCGCACTTGTCCACATCGTC 60.666 55.000 0.00 0.00 0.00 4.20
638 640 1.781555 GCACTTGTCCACATCGTCG 59.218 57.895 0.00 0.00 0.00 5.12
639 641 1.626654 GCACTTGTCCACATCGTCGG 61.627 60.000 0.00 0.00 0.00 4.79
640 642 0.319555 CACTTGTCCACATCGTCGGT 60.320 55.000 0.00 0.00 0.00 4.69
641 643 0.038526 ACTTGTCCACATCGTCGGTC 60.039 55.000 0.00 0.00 0.00 4.79
656 667 0.109689 CGGTCTCGTTCTCTTTCGCT 60.110 55.000 0.00 0.00 0.00 4.93
677 688 4.218417 GCTTCCTTGCCTCTCAACAAATTA 59.782 41.667 0.00 0.00 0.00 1.40
718 729 9.910511 CTTGTTTCTCAATTCTCAACATTTTTG 57.089 29.630 0.00 0.00 35.35 2.44
883 897 2.739784 CGGATGGGCTGAGCTAGG 59.260 66.667 3.72 0.00 0.00 3.02
891 905 1.478631 GGCTGAGCTAGGGCAATTTT 58.521 50.000 3.72 0.00 41.70 1.82
961 975 0.036732 TGGATCAGAGCCCACAACAC 59.963 55.000 1.14 0.00 0.00 3.32
1019 1036 4.112341 GCTACCACGCCGACTCGT 62.112 66.667 0.00 0.00 44.35 4.18
1090 1107 4.873129 CCATGTCTCCGGCCGACG 62.873 72.222 30.73 17.38 43.80 5.12
1144 1161 1.464376 CCCCGACGAGGACATATGCT 61.464 60.000 1.58 0.00 45.00 3.79
1447 1485 5.344207 CTGCAAGGTAAACTCACACTTAC 57.656 43.478 0.00 0.00 0.00 2.34
1505 1543 3.281727 AGGATAGCCGAATTTGAGCAA 57.718 42.857 8.35 0.00 39.96 3.91
1507 1545 4.210331 AGGATAGCCGAATTTGAGCAATT 58.790 39.130 8.35 0.00 37.84 2.32
1527 1565 4.974645 TTTGATTCACCTGTAGACCACT 57.025 40.909 0.00 0.00 0.00 4.00
1531 1569 4.102524 TGATTCACCTGTAGACCACTGTTT 59.897 41.667 0.00 0.00 0.00 2.83
1537 1575 5.047306 CACCTGTAGACCACTGTTTCATAGA 60.047 44.000 0.00 0.00 0.00 1.98
1601 1639 9.394477 GAGTAACAATTGGTGAATTTCTGTTAC 57.606 33.333 19.36 19.36 40.14 2.50
1626 1667 5.769367 TCATCCAGAAGATTCGGTATTACG 58.231 41.667 4.26 0.00 30.59 3.18
1702 1743 3.997021 AGCTGTATTGTGCAGTTACTGTC 59.003 43.478 14.23 7.00 36.42 3.51
1715 1756 6.370994 TGCAGTTACTGTCTGTAGTCTACTAC 59.629 42.308 14.23 12.40 40.24 2.73
1716 1757 6.594937 GCAGTTACTGTCTGTAGTCTACTACT 59.405 42.308 18.44 3.11 40.35 2.57
1717 1758 7.763528 GCAGTTACTGTCTGTAGTCTACTACTA 59.236 40.741 18.44 6.77 40.35 1.82
1741 1783 4.165779 ACAATAAAAGGAAATCTTGCGCG 58.834 39.130 0.00 0.00 35.55 6.86
1815 1857 2.093306 TTTGTGCGAACGATCCTGAT 57.907 45.000 0.00 0.00 0.00 2.90
1849 1891 0.828762 TGCAAAGCTGGTGGAAGCAT 60.829 50.000 0.00 0.00 46.93 3.79
1942 1984 6.093404 TGTTCTCTTTAGTCACTTATCTGCG 58.907 40.000 0.00 0.00 0.00 5.18
2035 2079 2.941453 TCACTGTCGCTGAAGTATCC 57.059 50.000 0.00 0.00 0.00 2.59
2042 2086 0.176680 CGCTGAAGTATCCCTGTGCT 59.823 55.000 0.00 0.00 0.00 4.40
2118 2162 8.880878 AGCAACCGAACTATTTTGTTTTATTT 57.119 26.923 0.00 0.00 0.00 1.40
2152 2196 2.586425 TCAAAGCACTAAAGCTGCCTT 58.414 42.857 0.00 0.00 45.89 4.35
2202 2246 1.031235 TGCAAATGTGTCTGTGGTGG 58.969 50.000 0.00 0.00 0.00 4.61
2222 2266 6.105333 GGTGGCATTATGTCTGCAAATTTAA 58.895 36.000 0.00 0.00 41.47 1.52
2703 2747 1.097547 GCTGTCTGCAACACACTGGT 61.098 55.000 0.00 0.00 42.31 4.00
2931 2975 2.350522 AGCTGTTTTAGAGTGCATCCG 58.649 47.619 0.00 0.00 0.00 4.18
3044 3088 7.147828 TGGAATACCACTTTACAGAGATCAGAG 60.148 40.741 0.00 0.00 41.77 3.35
3060 3104 5.421693 AGATCAGAGCTCTTTACAGTCACAT 59.578 40.000 15.27 0.00 0.00 3.21
3061 3105 4.814147 TCAGAGCTCTTTACAGTCACATG 58.186 43.478 15.27 0.00 0.00 3.21
3062 3106 3.370366 CAGAGCTCTTTACAGTCACATGC 59.630 47.826 15.27 0.00 0.00 4.06
3067 3111 4.242475 CTCTTTACAGTCACATGCCGTTA 58.758 43.478 0.00 0.00 0.00 3.18
3126 3170 4.098960 CCATCAATTTTGCCATCTACAGCT 59.901 41.667 0.00 0.00 0.00 4.24
3143 3187 3.454812 ACAGCTTACCGATTTATGGAGGT 59.545 43.478 0.00 0.00 40.52 3.85
3171 3215 1.004044 AGATGAACCAGAAGGCACCAG 59.996 52.381 0.00 0.00 39.06 4.00
3181 3226 5.221803 ACCAGAAGGCACCAGATATCTAATG 60.222 44.000 4.54 7.88 39.06 1.90
3208 3253 9.836864 TCAGTATAGATTGTATCAGCATTTTGT 57.163 29.630 0.00 0.00 0.00 2.83
3211 3256 9.669353 GTATAGATTGTATCAGCATTTTGTTGG 57.331 33.333 0.00 0.00 0.00 3.77
3212 3257 6.839124 AGATTGTATCAGCATTTTGTTGGA 57.161 33.333 0.00 0.00 0.00 3.53
3213 3258 7.230849 AGATTGTATCAGCATTTTGTTGGAA 57.769 32.000 0.00 0.00 0.00 3.53
3214 3259 7.092716 AGATTGTATCAGCATTTTGTTGGAAC 58.907 34.615 0.00 0.00 0.00 3.62
3215 3260 5.781210 TGTATCAGCATTTTGTTGGAACA 57.219 34.783 0.00 0.00 37.08 3.18
3216 3261 5.527951 TGTATCAGCATTTTGTTGGAACAC 58.472 37.500 0.00 0.00 39.29 3.32
3217 3262 4.669206 ATCAGCATTTTGTTGGAACACA 57.331 36.364 0.00 0.00 39.29 3.72
3218 3263 3.779759 TCAGCATTTTGTTGGAACACAC 58.220 40.909 0.00 0.00 39.29 3.82
3222 3278 5.809562 CAGCATTTTGTTGGAACACACTTTA 59.190 36.000 0.00 0.00 39.29 1.85
3269 3325 7.039152 GGTTCTGTAAAAGAGAACTACTAGGGT 60.039 40.741 14.32 0.00 45.82 4.34
3279 3335 7.974504 AGAGAACTACTAGGGTCAAAAATGAA 58.025 34.615 0.00 0.00 0.00 2.57
3285 3341 9.802039 ACTACTAGGGTCAAAAATGAATTTGTA 57.198 29.630 0.00 0.00 40.40 2.41
3322 3378 3.135348 TGGTTGCCCAATTGATTTGTTCA 59.865 39.130 7.12 0.00 37.98 3.18
3346 3402 2.755650 CATCTGCCGTGGATACCTTAC 58.244 52.381 0.00 0.00 0.00 2.34
3347 3403 1.855295 TCTGCCGTGGATACCTTACA 58.145 50.000 0.00 0.00 0.00 2.41
3435 3494 3.576078 AACACCTGGACTCAACATTGA 57.424 42.857 0.00 0.00 35.57 2.57
3468 3528 9.884636 TTTACTAATCTAACTGATTTGCTAGCA 57.115 29.630 14.93 14.93 42.28 3.49
3469 3529 9.884636 TTACTAATCTAACTGATTTGCTAGCAA 57.115 29.630 26.06 26.06 42.28 3.91
3470 3530 8.202745 ACTAATCTAACTGATTTGCTAGCAAC 57.797 34.615 29.33 19.05 42.28 4.17
3471 3531 8.043710 ACTAATCTAACTGATTTGCTAGCAACT 58.956 33.333 29.33 24.10 42.28 3.16
3472 3532 6.674694 ATCTAACTGATTTGCTAGCAACTG 57.325 37.500 29.33 22.44 35.46 3.16
3473 3533 4.937620 TCTAACTGATTTGCTAGCAACTGG 59.062 41.667 29.33 19.97 35.46 4.00
3474 3534 3.423539 ACTGATTTGCTAGCAACTGGA 57.576 42.857 29.33 15.59 35.46 3.86
3489 3625 4.335594 GCAACTGGAGTAGTTCAAAACTGT 59.664 41.667 2.65 0.00 46.55 3.55
3504 3640 7.447374 TCAAAACTGTGACACTTATTATGGG 57.553 36.000 7.20 0.00 0.00 4.00
3506 3642 7.504238 TCAAAACTGTGACACTTATTATGGGTT 59.496 33.333 7.20 0.00 0.00 4.11
3573 3709 5.658468 TCTCAGTTCTATGCATGAGTCTTG 58.342 41.667 10.16 1.67 40.07 3.02
3577 3713 5.236695 CAGTTCTATGCATGAGTCTTGGATG 59.763 44.000 19.31 11.36 0.00 3.51
3622 3758 9.886132 CATGTCTTATTTGTAGGGTAGTTAGTT 57.114 33.333 0.00 0.00 0.00 2.24
3623 3759 9.886132 ATGTCTTATTTGTAGGGTAGTTAGTTG 57.114 33.333 0.00 0.00 0.00 3.16
3626 3762 9.545928 TCTTATTTGTAGGGTAGTTAGTTGGTA 57.454 33.333 0.00 0.00 0.00 3.25
3640 3776 8.142485 AGTTAGTTGGTACCACATACTACATT 57.858 34.615 19.99 9.31 33.87 2.71
3745 3881 2.723322 TGAGAATGGAGATGGCTTGG 57.277 50.000 0.00 0.00 0.00 3.61
3763 3899 2.046700 TTTAGGTTGGCTCGGCGG 60.047 61.111 7.21 0.00 0.00 6.13
3878 4014 2.182030 CTTCTCCACCTCGCCGAC 59.818 66.667 0.00 0.00 0.00 4.79
4001 4138 1.580942 CGTCGTAACCCTGAACCGA 59.419 57.895 0.00 0.00 0.00 4.69
4021 4158 3.130516 CGACCATGGCTGAAGTAGAAGTA 59.869 47.826 13.04 0.00 0.00 2.24
4032 4169 3.518634 AGTAGAAGTAAGCAGAGCAGC 57.481 47.619 0.00 0.00 0.00 5.25
4064 4201 5.491982 TGTCCTTTATCTTTGAGAAGAGGC 58.508 41.667 0.00 0.00 44.65 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.686106 TACTCCCTCCCAACGCCC 60.686 66.667 0.00 0.00 0.00 6.13
115 116 1.988406 AGTACTCCCTCCCAACGCC 60.988 63.158 0.00 0.00 0.00 5.68
116 117 1.218316 CAGTACTCCCTCCCAACGC 59.782 63.158 0.00 0.00 0.00 4.84
117 118 0.903454 ACCAGTACTCCCTCCCAACG 60.903 60.000 0.00 0.00 0.00 4.10
118 119 1.003233 CAACCAGTACTCCCTCCCAAC 59.997 57.143 0.00 0.00 0.00 3.77
119 120 1.358152 CAACCAGTACTCCCTCCCAA 58.642 55.000 0.00 0.00 0.00 4.12
120 121 0.546747 CCAACCAGTACTCCCTCCCA 60.547 60.000 0.00 0.00 0.00 4.37
121 122 1.272554 CCCAACCAGTACTCCCTCCC 61.273 65.000 0.00 0.00 0.00 4.30
122 123 0.252558 TCCCAACCAGTACTCCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
123 124 1.196012 CTCCCAACCAGTACTCCCTC 58.804 60.000 0.00 0.00 0.00 4.30
124 125 0.252742 CCTCCCAACCAGTACTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
125 126 0.252558 TCCTCCCAACCAGTACTCCC 60.253 60.000 0.00 0.00 0.00 4.30
126 127 1.196012 CTCCTCCCAACCAGTACTCC 58.804 60.000 0.00 0.00 0.00 3.85
127 128 1.196012 CCTCCTCCCAACCAGTACTC 58.804 60.000 0.00 0.00 0.00 2.59
128 129 0.790993 TCCTCCTCCCAACCAGTACT 59.209 55.000 0.00 0.00 0.00 2.73
129 130 1.196012 CTCCTCCTCCCAACCAGTAC 58.804 60.000 0.00 0.00 0.00 2.73
130 131 1.007238 CTCTCCTCCTCCCAACCAGTA 59.993 57.143 0.00 0.00 0.00 2.74
131 132 0.252467 CTCTCCTCCTCCCAACCAGT 60.252 60.000 0.00 0.00 0.00 4.00
132 133 0.252467 ACTCTCCTCCTCCCAACCAG 60.252 60.000 0.00 0.00 0.00 4.00
133 134 0.545309 CACTCTCCTCCTCCCAACCA 60.545 60.000 0.00 0.00 0.00 3.67
134 135 1.268283 CCACTCTCCTCCTCCCAACC 61.268 65.000 0.00 0.00 0.00 3.77
135 136 1.268283 CCCACTCTCCTCCTCCCAAC 61.268 65.000 0.00 0.00 0.00 3.77
136 137 1.081092 CCCACTCTCCTCCTCCCAA 59.919 63.158 0.00 0.00 0.00 4.12
137 138 1.452226 TTCCCACTCTCCTCCTCCCA 61.452 60.000 0.00 0.00 0.00 4.37
138 139 0.252742 TTTCCCACTCTCCTCCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
139 140 1.199615 CTTTCCCACTCTCCTCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
140 141 1.199615 CCTTTCCCACTCTCCTCCTC 58.800 60.000 0.00 0.00 0.00 3.71
141 142 0.494095 ACCTTTCCCACTCTCCTCCT 59.506 55.000 0.00 0.00 0.00 3.69
142 143 0.906066 GACCTTTCCCACTCTCCTCC 59.094 60.000 0.00 0.00 0.00 4.30
143 144 0.533032 CGACCTTTCCCACTCTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
144 145 0.178929 ACGACCTTTCCCACTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
145 146 0.037232 CACGACCTTTCCCACTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
146 147 0.670854 GCACGACCTTTCCCACTCTC 60.671 60.000 0.00 0.00 0.00 3.20
147 148 1.371558 GCACGACCTTTCCCACTCT 59.628 57.895 0.00 0.00 0.00 3.24
148 149 2.027625 CGCACGACCTTTCCCACTC 61.028 63.158 0.00 0.00 0.00 3.51
149 150 2.030562 CGCACGACCTTTCCCACT 59.969 61.111 0.00 0.00 0.00 4.00
150 151 3.047877 CCGCACGACCTTTCCCAC 61.048 66.667 0.00 0.00 0.00 4.61
151 152 4.323477 CCCGCACGACCTTTCCCA 62.323 66.667 0.00 0.00 0.00 4.37
169 170 4.126390 CTCTGCAGAACGCGCACG 62.126 66.667 18.85 0.00 46.97 5.34
170 171 4.436448 GCTCTGCAGAACGCGCAC 62.436 66.667 18.85 0.00 46.97 5.34
174 175 2.607892 AAACCGCTCTGCAGAACGC 61.608 57.895 29.41 22.72 42.89 4.84
175 176 1.205064 CAAACCGCTCTGCAGAACG 59.795 57.895 28.21 28.21 33.82 3.95
176 177 0.663153 AACAAACCGCTCTGCAGAAC 59.337 50.000 18.85 12.84 0.00 3.01
177 178 1.388547 AAACAAACCGCTCTGCAGAA 58.611 45.000 18.85 1.63 0.00 3.02
178 179 1.333619 GAAAACAAACCGCTCTGCAGA 59.666 47.619 17.19 17.19 0.00 4.26
179 180 1.758783 GAAAACAAACCGCTCTGCAG 58.241 50.000 7.63 7.63 0.00 4.41
180 181 0.028770 CGAAAACAAACCGCTCTGCA 59.971 50.000 0.00 0.00 0.00 4.41
181 182 0.028902 ACGAAAACAAACCGCTCTGC 59.971 50.000 0.00 0.00 0.00 4.26
182 183 1.329292 TCACGAAAACAAACCGCTCTG 59.671 47.619 0.00 0.00 0.00 3.35
183 184 1.658994 TCACGAAAACAAACCGCTCT 58.341 45.000 0.00 0.00 0.00 4.09
184 185 2.681152 ATCACGAAAACAAACCGCTC 57.319 45.000 0.00 0.00 0.00 5.03
185 186 4.759516 ATAATCACGAAAACAAACCGCT 57.240 36.364 0.00 0.00 0.00 5.52
186 187 4.494410 GCTATAATCACGAAAACAAACCGC 59.506 41.667 0.00 0.00 0.00 5.68
187 188 4.721977 CGCTATAATCACGAAAACAAACCG 59.278 41.667 0.00 0.00 0.00 4.44
188 189 5.860641 TCGCTATAATCACGAAAACAAACC 58.139 37.500 0.00 0.00 31.97 3.27
189 190 6.410914 CCATCGCTATAATCACGAAAACAAAC 59.589 38.462 0.00 0.00 39.56 2.93
190 191 6.314152 TCCATCGCTATAATCACGAAAACAAA 59.686 34.615 0.00 0.00 39.56 2.83
191 192 5.813157 TCCATCGCTATAATCACGAAAACAA 59.187 36.000 0.00 0.00 39.56 2.83
192 193 5.353111 TCCATCGCTATAATCACGAAAACA 58.647 37.500 0.00 0.00 39.56 2.83
193 194 5.107453 CCTCCATCGCTATAATCACGAAAAC 60.107 44.000 0.00 0.00 39.56 2.43
194 195 4.988540 CCTCCATCGCTATAATCACGAAAA 59.011 41.667 0.00 0.00 39.56 2.29
195 196 4.279922 TCCTCCATCGCTATAATCACGAAA 59.720 41.667 0.00 0.00 39.56 3.46
196 197 3.824443 TCCTCCATCGCTATAATCACGAA 59.176 43.478 0.00 0.00 39.56 3.85
197 198 3.418047 TCCTCCATCGCTATAATCACGA 58.582 45.455 0.00 0.00 40.53 4.35
198 199 3.850122 TCCTCCATCGCTATAATCACG 57.150 47.619 0.00 0.00 0.00 4.35
199 200 6.754209 CACTAATCCTCCATCGCTATAATCAC 59.246 42.308 0.00 0.00 0.00 3.06
200 201 6.127338 CCACTAATCCTCCATCGCTATAATCA 60.127 42.308 0.00 0.00 0.00 2.57
201 202 6.276847 CCACTAATCCTCCATCGCTATAATC 58.723 44.000 0.00 0.00 0.00 1.75
202 203 5.129485 CCCACTAATCCTCCATCGCTATAAT 59.871 44.000 0.00 0.00 0.00 1.28
203 204 4.466370 CCCACTAATCCTCCATCGCTATAA 59.534 45.833 0.00 0.00 0.00 0.98
204 205 4.023980 CCCACTAATCCTCCATCGCTATA 58.976 47.826 0.00 0.00 0.00 1.31
205 206 2.834549 CCCACTAATCCTCCATCGCTAT 59.165 50.000 0.00 0.00 0.00 2.97
206 207 2.248248 CCCACTAATCCTCCATCGCTA 58.752 52.381 0.00 0.00 0.00 4.26
207 208 1.051812 CCCACTAATCCTCCATCGCT 58.948 55.000 0.00 0.00 0.00 4.93
208 209 0.759346 ACCCACTAATCCTCCATCGC 59.241 55.000 0.00 0.00 0.00 4.58
209 210 2.434336 TCAACCCACTAATCCTCCATCG 59.566 50.000 0.00 0.00 0.00 3.84
210 211 4.713792 ATCAACCCACTAATCCTCCATC 57.286 45.455 0.00 0.00 0.00 3.51
211 212 4.386761 CCAATCAACCCACTAATCCTCCAT 60.387 45.833 0.00 0.00 0.00 3.41
212 213 3.053693 CCAATCAACCCACTAATCCTCCA 60.054 47.826 0.00 0.00 0.00 3.86
213 214 3.555966 CCAATCAACCCACTAATCCTCC 58.444 50.000 0.00 0.00 0.00 4.30
214 215 2.952310 GCCAATCAACCCACTAATCCTC 59.048 50.000 0.00 0.00 0.00 3.71
215 216 2.683742 CGCCAATCAACCCACTAATCCT 60.684 50.000 0.00 0.00 0.00 3.24
216 217 1.676006 CGCCAATCAACCCACTAATCC 59.324 52.381 0.00 0.00 0.00 3.01
217 218 2.097466 CACGCCAATCAACCCACTAATC 59.903 50.000 0.00 0.00 0.00 1.75
218 219 2.091541 CACGCCAATCAACCCACTAAT 58.908 47.619 0.00 0.00 0.00 1.73
219 220 1.202830 ACACGCCAATCAACCCACTAA 60.203 47.619 0.00 0.00 0.00 2.24
220 221 0.398696 ACACGCCAATCAACCCACTA 59.601 50.000 0.00 0.00 0.00 2.74
221 222 0.467290 AACACGCCAATCAACCCACT 60.467 50.000 0.00 0.00 0.00 4.00
222 223 0.387565 AAACACGCCAATCAACCCAC 59.612 50.000 0.00 0.00 0.00 4.61
223 224 0.387202 CAAACACGCCAATCAACCCA 59.613 50.000 0.00 0.00 0.00 4.51
224 225 0.387565 ACAAACACGCCAATCAACCC 59.612 50.000 0.00 0.00 0.00 4.11
225 226 1.857837 CAACAAACACGCCAATCAACC 59.142 47.619 0.00 0.00 0.00 3.77
226 227 1.257675 GCAACAAACACGCCAATCAAC 59.742 47.619 0.00 0.00 0.00 3.18
227 228 1.134995 TGCAACAAACACGCCAATCAA 60.135 42.857 0.00 0.00 0.00 2.57
228 229 0.457443 TGCAACAAACACGCCAATCA 59.543 45.000 0.00 0.00 0.00 2.57
229 230 1.720852 GATGCAACAAACACGCCAATC 59.279 47.619 0.00 0.00 0.00 2.67
230 231 1.068281 TGATGCAACAAACACGCCAAT 59.932 42.857 0.00 0.00 0.00 3.16
231 232 0.457443 TGATGCAACAAACACGCCAA 59.543 45.000 0.00 0.00 0.00 4.52
232 233 0.457443 TTGATGCAACAAACACGCCA 59.543 45.000 6.97 0.00 0.00 5.69
233 234 1.565305 TTTGATGCAACAAACACGCC 58.435 45.000 17.17 0.00 35.29 5.68
239 240 5.527033 TCATTCGATGTTTGATGCAACAAA 58.473 33.333 17.17 17.17 37.41 2.83
240 241 5.118642 TCATTCGATGTTTGATGCAACAA 57.881 34.783 5.14 5.14 0.00 2.83
241 242 4.762956 TCATTCGATGTTTGATGCAACA 57.237 36.364 0.00 0.00 0.00 3.33
242 243 7.043854 CCTTAATCATTCGATGTTTGATGCAAC 60.044 37.037 0.00 0.00 30.76 4.17
243 244 6.974048 CCTTAATCATTCGATGTTTGATGCAA 59.026 34.615 0.00 0.00 30.76 4.08
244 245 6.459985 CCCTTAATCATTCGATGTTTGATGCA 60.460 38.462 0.00 0.00 30.76 3.96
245 246 5.916883 CCCTTAATCATTCGATGTTTGATGC 59.083 40.000 0.00 0.00 30.76 3.91
246 247 7.031226 ACCCTTAATCATTCGATGTTTGATG 57.969 36.000 0.00 0.00 30.76 3.07
247 248 6.828273 TGACCCTTAATCATTCGATGTTTGAT 59.172 34.615 0.00 0.00 30.13 2.57
248 249 6.176896 TGACCCTTAATCATTCGATGTTTGA 58.823 36.000 0.00 0.00 30.13 2.69
249 250 6.435430 TGACCCTTAATCATTCGATGTTTG 57.565 37.500 0.00 0.00 30.13 2.93
250 251 7.645058 AATGACCCTTAATCATTCGATGTTT 57.355 32.000 0.00 0.00 41.89 2.83
251 252 8.210946 TCTAATGACCCTTAATCATTCGATGTT 58.789 33.333 6.14 0.00 43.96 2.71
252 253 7.735917 TCTAATGACCCTTAATCATTCGATGT 58.264 34.615 6.14 0.00 43.96 3.06
253 254 8.783833 ATCTAATGACCCTTAATCATTCGATG 57.216 34.615 12.80 0.00 42.67 3.84
254 255 9.799106 AAATCTAATGACCCTTAATCATTCGAT 57.201 29.630 6.14 8.17 44.53 3.59
255 256 9.627123 AAAATCTAATGACCCTTAATCATTCGA 57.373 29.630 6.14 6.53 43.96 3.71
256 257 9.669353 CAAAATCTAATGACCCTTAATCATTCG 57.331 33.333 6.14 1.99 43.96 3.34
260 261 9.527157 TCAACAAAATCTAATGACCCTTAATCA 57.473 29.630 0.00 0.00 0.00 2.57
263 264 8.748412 CCATCAACAAAATCTAATGACCCTTAA 58.252 33.333 0.00 0.00 0.00 1.85
264 265 8.112822 TCCATCAACAAAATCTAATGACCCTTA 58.887 33.333 0.00 0.00 0.00 2.69
265 266 6.953520 TCCATCAACAAAATCTAATGACCCTT 59.046 34.615 0.00 0.00 0.00 3.95
266 267 6.493166 TCCATCAACAAAATCTAATGACCCT 58.507 36.000 0.00 0.00 0.00 4.34
267 268 6.773976 TCCATCAACAAAATCTAATGACCC 57.226 37.500 0.00 0.00 0.00 4.46
268 269 7.068593 TCCATCCATCAACAAAATCTAATGACC 59.931 37.037 0.00 0.00 0.00 4.02
269 270 7.999679 TCCATCCATCAACAAAATCTAATGAC 58.000 34.615 0.00 0.00 0.00 3.06
270 271 8.771521 ATCCATCCATCAACAAAATCTAATGA 57.228 30.769 0.00 0.00 0.00 2.57
271 272 8.857098 AGATCCATCCATCAACAAAATCTAATG 58.143 33.333 0.00 0.00 0.00 1.90
272 273 8.857098 CAGATCCATCCATCAACAAAATCTAAT 58.143 33.333 0.00 0.00 0.00 1.73
273 274 8.054572 TCAGATCCATCCATCAACAAAATCTAA 58.945 33.333 0.00 0.00 0.00 2.10
274 275 7.576403 TCAGATCCATCCATCAACAAAATCTA 58.424 34.615 0.00 0.00 0.00 1.98
275 276 6.429151 TCAGATCCATCCATCAACAAAATCT 58.571 36.000 0.00 0.00 0.00 2.40
276 277 6.704289 TCAGATCCATCCATCAACAAAATC 57.296 37.500 0.00 0.00 0.00 2.17
277 278 7.125204 ACAATCAGATCCATCCATCAACAAAAT 59.875 33.333 0.00 0.00 0.00 1.82
278 279 6.438108 ACAATCAGATCCATCCATCAACAAAA 59.562 34.615 0.00 0.00 0.00 2.44
279 280 5.953548 ACAATCAGATCCATCCATCAACAAA 59.046 36.000 0.00 0.00 0.00 2.83
280 281 5.512298 ACAATCAGATCCATCCATCAACAA 58.488 37.500 0.00 0.00 0.00 2.83
281 282 5.120054 ACAATCAGATCCATCCATCAACA 57.880 39.130 0.00 0.00 0.00 3.33
282 283 6.270815 CAAACAATCAGATCCATCCATCAAC 58.729 40.000 0.00 0.00 0.00 3.18
283 284 5.361571 CCAAACAATCAGATCCATCCATCAA 59.638 40.000 0.00 0.00 0.00 2.57
284 285 4.891168 CCAAACAATCAGATCCATCCATCA 59.109 41.667 0.00 0.00 0.00 3.07
285 286 4.891756 ACCAAACAATCAGATCCATCCATC 59.108 41.667 0.00 0.00 0.00 3.51
286 287 4.875389 ACCAAACAATCAGATCCATCCAT 58.125 39.130 0.00 0.00 0.00 3.41
287 288 4.320546 ACCAAACAATCAGATCCATCCA 57.679 40.909 0.00 0.00 0.00 3.41
288 289 5.665916 AAACCAAACAATCAGATCCATCC 57.334 39.130 0.00 0.00 0.00 3.51
289 290 6.101997 GGAAAACCAAACAATCAGATCCATC 58.898 40.000 0.00 0.00 0.00 3.51
290 291 5.336690 CGGAAAACCAAACAATCAGATCCAT 60.337 40.000 0.00 0.00 0.00 3.41
291 292 4.022416 CGGAAAACCAAACAATCAGATCCA 60.022 41.667 0.00 0.00 0.00 3.41
292 293 4.485163 CGGAAAACCAAACAATCAGATCC 58.515 43.478 0.00 0.00 0.00 3.36
293 294 3.920412 GCGGAAAACCAAACAATCAGATC 59.080 43.478 0.00 0.00 0.00 2.75
294 295 3.573967 AGCGGAAAACCAAACAATCAGAT 59.426 39.130 0.00 0.00 0.00 2.90
295 296 2.955660 AGCGGAAAACCAAACAATCAGA 59.044 40.909 0.00 0.00 0.00 3.27
296 297 3.004734 AGAGCGGAAAACCAAACAATCAG 59.995 43.478 0.00 0.00 0.00 2.90
297 298 2.955660 AGAGCGGAAAACCAAACAATCA 59.044 40.909 0.00 0.00 0.00 2.57
298 299 3.253432 AGAGAGCGGAAAACCAAACAATC 59.747 43.478 0.00 0.00 0.00 2.67
299 300 3.222603 AGAGAGCGGAAAACCAAACAAT 58.777 40.909 0.00 0.00 0.00 2.71
300 301 2.650322 AGAGAGCGGAAAACCAAACAA 58.350 42.857 0.00 0.00 0.00 2.83
301 302 2.341846 AGAGAGCGGAAAACCAAACA 57.658 45.000 0.00 0.00 0.00 2.83
302 303 3.710326 AAAGAGAGCGGAAAACCAAAC 57.290 42.857 0.00 0.00 0.00 2.93
303 304 4.401202 AGAAAAAGAGAGCGGAAAACCAAA 59.599 37.500 0.00 0.00 0.00 3.28
304 305 3.951680 AGAAAAAGAGAGCGGAAAACCAA 59.048 39.130 0.00 0.00 0.00 3.67
305 306 3.551846 AGAAAAAGAGAGCGGAAAACCA 58.448 40.909 0.00 0.00 0.00 3.67
306 307 4.569761 AAGAAAAAGAGAGCGGAAAACC 57.430 40.909 0.00 0.00 0.00 3.27
307 308 9.331106 CTATAAAAGAAAAAGAGAGCGGAAAAC 57.669 33.333 0.00 0.00 0.00 2.43
308 309 8.512138 CCTATAAAAGAAAAAGAGAGCGGAAAA 58.488 33.333 0.00 0.00 0.00 2.29
309 310 7.881232 TCCTATAAAAGAAAAAGAGAGCGGAAA 59.119 33.333 0.00 0.00 0.00 3.13
310 311 7.391620 TCCTATAAAAGAAAAAGAGAGCGGAA 58.608 34.615 0.00 0.00 0.00 4.30
311 312 6.942976 TCCTATAAAAGAAAAAGAGAGCGGA 58.057 36.000 0.00 0.00 0.00 5.54
312 313 6.819146 ACTCCTATAAAAGAAAAAGAGAGCGG 59.181 38.462 0.00 0.00 0.00 5.52
313 314 7.835634 ACTCCTATAAAAGAAAAAGAGAGCG 57.164 36.000 0.00 0.00 0.00 5.03
314 315 9.878667 ACTACTCCTATAAAAGAAAAAGAGAGC 57.121 33.333 0.00 0.00 0.00 4.09
323 324 9.642343 TGCTCATCTACTACTCCTATAAAAGAA 57.358 33.333 0.00 0.00 0.00 2.52
324 325 9.815306 ATGCTCATCTACTACTCCTATAAAAGA 57.185 33.333 0.00 0.00 0.00 2.52
326 327 9.588096 TGATGCTCATCTACTACTCCTATAAAA 57.412 33.333 10.76 0.00 38.60 1.52
327 328 9.760926 ATGATGCTCATCTACTACTCCTATAAA 57.239 33.333 10.76 0.00 38.60 1.40
330 331 8.777089 TCTATGATGCTCATCTACTACTCCTAT 58.223 37.037 10.76 0.00 38.26 2.57
331 332 8.044309 GTCTATGATGCTCATCTACTACTCCTA 58.956 40.741 10.76 0.00 38.26 2.94
332 333 6.884295 GTCTATGATGCTCATCTACTACTCCT 59.116 42.308 10.76 0.00 38.26 3.69
333 334 6.884295 AGTCTATGATGCTCATCTACTACTCC 59.116 42.308 10.76 0.00 38.26 3.85
334 335 7.921786 AGTCTATGATGCTCATCTACTACTC 57.078 40.000 10.76 0.00 38.26 2.59
335 336 7.723616 ACAAGTCTATGATGCTCATCTACTACT 59.276 37.037 10.76 6.93 38.26 2.57
336 337 7.881142 ACAAGTCTATGATGCTCATCTACTAC 58.119 38.462 10.76 5.15 38.26 2.73
337 338 7.721399 TGACAAGTCTATGATGCTCATCTACTA 59.279 37.037 10.76 1.05 38.26 1.82
338 339 6.548993 TGACAAGTCTATGATGCTCATCTACT 59.451 38.462 10.76 6.65 38.26 2.57
339 340 6.743110 TGACAAGTCTATGATGCTCATCTAC 58.257 40.000 10.76 4.87 38.26 2.59
340 341 6.966534 TGACAAGTCTATGATGCTCATCTA 57.033 37.500 10.76 0.00 38.26 1.98
341 342 5.866159 TGACAAGTCTATGATGCTCATCT 57.134 39.130 10.76 0.66 38.26 2.90
342 343 6.221659 TGATGACAAGTCTATGATGCTCATC 58.778 40.000 3.03 3.03 38.26 2.92
396 397 9.667107 ACTCATCAAGAAATCGGTTTAAGATTA 57.333 29.630 0.00 0.00 37.34 1.75
430 431 7.293828 TCCCAAAAATAAGGCCAATTCTTTTT 58.706 30.769 5.01 6.63 32.10 1.94
464 465 0.958822 GGACCACAACATGAACACCC 59.041 55.000 0.00 0.00 0.00 4.61
480 481 3.099267 AGCTTAGTCGCATACATGGAC 57.901 47.619 0.00 0.00 0.00 4.02
516 517 1.523758 GTCATGAGCAAAACCCGTCT 58.476 50.000 0.00 0.00 0.00 4.18
573 574 3.043586 CGAAGCTGATGTATGGTACGAC 58.956 50.000 0.00 0.00 0.00 4.34
574 575 3.349488 CGAAGCTGATGTATGGTACGA 57.651 47.619 0.00 0.00 0.00 3.43
603 605 1.792949 GTGCGACGATTGACTTTGACT 59.207 47.619 0.00 0.00 0.00 3.41
616 618 1.781555 GATGTGGACAAGTGCGACG 59.218 57.895 0.00 0.00 0.00 5.12
633 635 1.196354 GAAAGAGAACGAGACCGACGA 59.804 52.381 0.00 0.00 39.50 4.20
634 636 1.604396 GAAAGAGAACGAGACCGACG 58.396 55.000 0.00 0.00 39.50 5.12
635 637 1.604396 CGAAAGAGAACGAGACCGAC 58.396 55.000 0.00 0.00 39.50 4.79
636 638 0.109873 GCGAAAGAGAACGAGACCGA 60.110 55.000 0.00 0.00 39.50 4.69
637 639 0.109689 AGCGAAAGAGAACGAGACCG 60.110 55.000 0.00 0.00 42.50 4.79
638 640 1.987074 GAAGCGAAAGAGAACGAGACC 59.013 52.381 0.00 0.00 0.00 3.85
639 641 1.987074 GGAAGCGAAAGAGAACGAGAC 59.013 52.381 0.00 0.00 0.00 3.36
640 642 1.887198 AGGAAGCGAAAGAGAACGAGA 59.113 47.619 0.00 0.00 0.00 4.04
641 643 2.355717 AGGAAGCGAAAGAGAACGAG 57.644 50.000 0.00 0.00 0.00 4.18
656 667 6.916360 AATAATTTGTTGAGAGGCAAGGAA 57.084 33.333 0.00 0.00 37.12 3.36
697 708 8.359642 CCTACCAAAAATGTTGAGAATTGAGAA 58.640 33.333 0.00 0.00 0.00 2.87
698 709 7.523709 GCCTACCAAAAATGTTGAGAATTGAGA 60.524 37.037 0.00 0.00 0.00 3.27
699 710 6.587608 GCCTACCAAAAATGTTGAGAATTGAG 59.412 38.462 0.00 0.00 0.00 3.02
700 711 6.041409 TGCCTACCAAAAATGTTGAGAATTGA 59.959 34.615 0.00 0.00 0.00 2.57
701 712 6.222389 TGCCTACCAAAAATGTTGAGAATTG 58.778 36.000 0.00 0.00 0.00 2.32
702 713 6.418057 TGCCTACCAAAAATGTTGAGAATT 57.582 33.333 0.00 0.00 0.00 2.17
703 714 6.438425 AGATGCCTACCAAAAATGTTGAGAAT 59.562 34.615 0.00 0.00 0.00 2.40
718 729 6.575162 TTTTCTTTTTGAGAGATGCCTACC 57.425 37.500 0.00 0.00 35.37 3.18
805 819 1.603172 CGATGAGCCGATCCACCTTAC 60.603 57.143 0.00 0.00 0.00 2.34
808 822 1.043116 TTCGATGAGCCGATCCACCT 61.043 55.000 0.00 0.00 38.45 4.00
891 905 5.934625 GTCAGTGGATGAAGAAGCTTAGAAA 59.065 40.000 0.00 0.00 40.43 2.52
1019 1036 1.305887 GAGTTCGGGAGGAAGGGGA 60.306 63.158 0.00 0.00 34.69 4.81
1436 1474 1.912417 AGAGGCTCGTAAGTGTGAGT 58.088 50.000 9.22 0.00 34.67 3.41
1447 1485 0.529337 TACGACGACCTAGAGGCTCG 60.529 60.000 9.22 14.84 41.28 5.03
1475 1513 8.262227 TCAAATTCGGCTATCCTAGAGTTTAAA 58.738 33.333 0.00 0.00 0.00 1.52
1505 1543 5.221925 ACAGTGGTCTACAGGTGAATCAAAT 60.222 40.000 0.00 0.00 0.00 2.32
1507 1545 3.646162 ACAGTGGTCTACAGGTGAATCAA 59.354 43.478 0.00 0.00 0.00 2.57
1537 1575 9.793259 TCTAACAGTGAAGAATTACCAGAAATT 57.207 29.630 0.00 0.00 0.00 1.82
1566 1604 8.934023 TTCACCAATTGTTACTCTTAAATCCT 57.066 30.769 4.43 0.00 0.00 3.24
1577 1615 9.691362 ATGTAACAGAAATTCACCAATTGTTAC 57.309 29.630 18.58 18.58 40.40 2.50
1580 1618 7.950512 TGATGTAACAGAAATTCACCAATTGT 58.049 30.769 4.43 0.00 32.18 2.71
1584 1622 6.718912 TGGATGATGTAACAGAAATTCACCAA 59.281 34.615 0.00 0.00 0.00 3.67
1588 1626 8.102676 TCTTCTGGATGATGTAACAGAAATTCA 58.897 33.333 7.29 0.00 45.89 2.57
1601 1639 6.309009 CGTAATACCGAATCTTCTGGATGATG 59.691 42.308 7.49 0.00 34.45 3.07
1715 1756 7.321271 CGCGCAAGATTTCCTTTTATTGTATAG 59.679 37.037 8.75 0.00 43.02 1.31
1716 1757 7.129622 CGCGCAAGATTTCCTTTTATTGTATA 58.870 34.615 8.75 0.00 43.02 1.47
1717 1758 5.971202 CGCGCAAGATTTCCTTTTATTGTAT 59.029 36.000 8.75 0.00 43.02 2.29
1729 1771 1.130373 TCACATTCCGCGCAAGATTTC 59.870 47.619 8.75 0.00 43.02 2.17
1741 1783 9.459640 CATAAGATTTGATCAATGTCACATTCC 57.540 33.333 9.40 0.00 0.00 3.01
1849 1891 7.609760 AATTCAAATCAACATAGTCGCAGTA 57.390 32.000 0.00 0.00 0.00 2.74
1942 1984 4.946478 ATATGAGCCACTACAGAAGTCC 57.054 45.455 0.00 0.00 35.76 3.85
1998 2042 6.073981 ACAGTGATCAGAGGCAGATTATCTA 58.926 40.000 0.00 0.00 0.00 1.98
2118 2162 5.669477 AGTGCTTTGAAACATTTGCCTAAA 58.331 33.333 0.00 0.00 0.00 1.85
2197 2241 2.212812 TTGCAGACATAATGCCACCA 57.787 45.000 0.00 0.00 43.18 4.17
2664 2708 4.040095 CAGCTCTTCACATCCTCCATATGA 59.960 45.833 3.65 0.00 0.00 2.15
2703 2747 1.579964 CTGAAAGCACGCCATCAGCA 61.580 55.000 8.26 0.00 44.04 4.41
2931 2975 2.496899 TGAATTCCTCCCTCACTTGC 57.503 50.000 2.27 0.00 0.00 4.01
3039 3083 4.814147 CATGTGACTGTAAAGAGCTCTGA 58.186 43.478 19.06 5.66 0.00 3.27
3044 3088 1.394917 CGGCATGTGACTGTAAAGAGC 59.605 52.381 0.00 0.00 0.00 4.09
3067 3111 1.228124 TTGCAGCTAGCCCGTTTGT 60.228 52.632 12.13 0.00 44.83 2.83
3126 3170 9.603921 CTTTAGTTTACCTCCATAAATCGGTAA 57.396 33.333 0.00 0.00 39.51 2.85
3143 3187 6.430000 GTGCCTTCTGGTTCATCTTTAGTTTA 59.570 38.462 0.00 0.00 35.27 2.01
3207 3252 3.506067 CCTCCCATAAAGTGTGTTCCAAC 59.494 47.826 0.00 0.00 0.00 3.77
3208 3253 3.761897 CCTCCCATAAAGTGTGTTCCAA 58.238 45.455 0.00 0.00 0.00 3.53
3209 3254 2.554344 GCCTCCCATAAAGTGTGTTCCA 60.554 50.000 0.00 0.00 0.00 3.53
3210 3255 2.092323 GCCTCCCATAAAGTGTGTTCC 58.908 52.381 0.00 0.00 0.00 3.62
3211 3256 2.488153 GTGCCTCCCATAAAGTGTGTTC 59.512 50.000 0.00 0.00 0.00 3.18
3212 3257 2.514803 GTGCCTCCCATAAAGTGTGTT 58.485 47.619 0.00 0.00 0.00 3.32
3213 3258 1.271926 GGTGCCTCCCATAAAGTGTGT 60.272 52.381 0.00 0.00 0.00 3.72
3214 3259 1.271871 TGGTGCCTCCCATAAAGTGTG 60.272 52.381 0.00 0.00 34.77 3.82
3215 3260 1.072266 TGGTGCCTCCCATAAAGTGT 58.928 50.000 0.00 0.00 34.77 3.55
3216 3261 2.026641 CATGGTGCCTCCCATAAAGTG 58.973 52.381 0.00 0.00 43.46 3.16
3217 3262 1.063717 CCATGGTGCCTCCCATAAAGT 60.064 52.381 2.57 0.00 43.46 2.66
3218 3263 1.696063 CCATGGTGCCTCCCATAAAG 58.304 55.000 2.57 0.00 43.46 1.85
3222 3278 2.618185 ACCCATGGTGCCTCCCAT 60.618 61.111 11.73 0.00 46.28 4.00
3237 3293 3.986277 TCTCTTTTACAGAACCACGACC 58.014 45.455 0.00 0.00 0.00 4.79
3279 3335 8.632679 CAACCACTGGCATATCTTTATACAAAT 58.367 33.333 0.00 0.00 0.00 2.32
3322 3378 0.390860 GTATCCACGGCAGATGCTCT 59.609 55.000 4.59 0.00 41.70 4.09
3333 3389 6.971527 TTACAACAATGTAAGGTATCCACG 57.028 37.500 0.00 0.00 44.90 4.94
3346 3402 7.095565 ATGTGCACATCAATTGTTACAACAATG 60.096 33.333 26.61 11.39 44.18 2.82
3347 3403 6.930164 ATGTGCACATCAATTGTTACAACAAT 59.070 30.769 26.61 13.30 45.53 2.71
3419 3478 6.824305 AGTTAAATCAATGTTGAGTCCAGG 57.176 37.500 1.65 0.00 41.08 4.45
3451 3511 4.937620 TCCAGTTGCTAGCAAATCAGTTAG 59.062 41.667 30.83 16.30 37.70 2.34
3469 3529 5.116882 GTCACAGTTTTGAACTACTCCAGT 58.883 41.667 0.00 0.00 40.46 4.00
3470 3530 5.006746 GTGTCACAGTTTTGAACTACTCCAG 59.993 44.000 0.00 0.00 40.46 3.86
3471 3531 4.873827 GTGTCACAGTTTTGAACTACTCCA 59.126 41.667 0.00 0.00 40.46 3.86
3472 3532 5.116882 AGTGTCACAGTTTTGAACTACTCC 58.883 41.667 5.62 0.00 40.46 3.85
3473 3533 6.663944 AAGTGTCACAGTTTTGAACTACTC 57.336 37.500 5.62 0.00 40.46 2.59
3474 3534 8.732746 AATAAGTGTCACAGTTTTGAACTACT 57.267 30.769 2.42 0.00 40.46 2.57
3489 3625 4.080015 CCCTCCAACCCATAATAAGTGTCA 60.080 45.833 0.00 0.00 0.00 3.58
3504 3640 3.686016 TCAAATACTTGCTCCCTCCAAC 58.314 45.455 0.00 0.00 32.14 3.77
3506 3642 3.330701 AGTTCAAATACTTGCTCCCTCCA 59.669 43.478 0.00 0.00 32.14 3.86
3594 3730 5.681639 ACTACCCTACAAATAAGACATGGC 58.318 41.667 0.00 0.00 0.00 4.40
3622 3758 7.131907 AGCATTAATGTAGTATGTGGTACCA 57.868 36.000 11.60 11.60 33.58 3.25
3623 3759 8.985805 GTTAGCATTAATGTAGTATGTGGTACC 58.014 37.037 16.61 4.43 33.58 3.34
3626 3762 7.570132 TGGTTAGCATTAATGTAGTATGTGGT 58.430 34.615 16.61 0.00 0.00 4.16
3745 3881 2.396157 CCGCCGAGCCAACCTAAAC 61.396 63.158 0.00 0.00 0.00 2.01
3773 3909 0.529773 CGAGAAATCGGATTGGCGGA 60.530 55.000 3.59 0.00 0.00 5.54
3809 3945 3.257393 CTCACCTTCTCCAAGAACGATG 58.743 50.000 0.00 0.00 29.89 3.84
3810 3946 2.354203 GCTCACCTTCTCCAAGAACGAT 60.354 50.000 0.00 0.00 29.89 3.73
3987 4123 1.677820 CCATGGTCGGTTCAGGGTTAC 60.678 57.143 2.57 0.00 32.07 2.50
4001 4138 4.624125 GCTTACTTCTACTTCAGCCATGGT 60.624 45.833 14.67 0.00 0.00 3.55
4021 4158 1.373999 GTCAGTCGCTGCTCTGCTT 60.374 57.895 13.95 0.00 0.00 3.91
4032 4169 4.457834 AAGATAAAGGACAGGTCAGTCG 57.542 45.455 1.41 0.00 39.42 4.18
4064 4201 3.257561 CCTTCTGCACGCCGATCG 61.258 66.667 8.51 8.51 45.38 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.