Multiple sequence alignment - TraesCS7A01G383500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G383500 chr7A 100.000 2399 0 0 1 2399 558647924 558645526 0.000000e+00 4431
1 TraesCS7A01G383500 chr5A 94.836 1007 47 5 1395 2399 445700382 445701385 0.000000e+00 1567
2 TraesCS7A01G383500 chr5A 93.657 1009 57 7 1395 2399 532980808 532979803 0.000000e+00 1502
3 TraesCS7A01G383500 chr5A 92.951 993 64 6 1 991 707740961 707739973 0.000000e+00 1441
4 TraesCS7A01G383500 chr5A 93.187 411 26 2 989 1398 687274975 687274566 9.490000e-169 603
5 TraesCS7A01G383500 chr3A 94.036 1006 57 3 1395 2399 84901050 84900047 0.000000e+00 1522
6 TraesCS7A01G383500 chr3A 93.831 1005 60 2 1395 2399 85784104 85783102 0.000000e+00 1511
7 TraesCS7A01G383500 chr1A 93.731 1005 58 4 1397 2399 96682873 96683874 0.000000e+00 1502
8 TraesCS7A01G383500 chr2A 92.976 1025 62 9 1379 2399 653911066 653912084 0.000000e+00 1485
9 TraesCS7A01G383500 chr7D 92.979 997 62 7 1 991 406099125 406100119 0.000000e+00 1447
10 TraesCS7A01G383500 chr5D 92.757 994 62 6 1 991 90703644 90702658 0.000000e+00 1428
11 TraesCS7A01G383500 chr5D 92.308 1001 67 7 1 992 70284871 70283872 0.000000e+00 1413
12 TraesCS7A01G383500 chr5D 92.440 992 66 7 1 990 219896158 219897142 0.000000e+00 1408
13 TraesCS7A01G383500 chr2D 92.656 994 64 7 1 991 351338426 351337439 0.000000e+00 1423
14 TraesCS7A01G383500 chr6D 92.713 988 63 8 10 991 453508236 453509220 0.000000e+00 1417
15 TraesCS7A01G383500 chr6D 92.246 993 69 5 1 991 133416352 133417338 0.000000e+00 1400
16 TraesCS7A01G383500 chr3D 91.913 1014 77 5 1390 2399 531152834 531153846 0.000000e+00 1413
17 TraesCS7A01G383500 chr3D 91.964 1008 75 6 1395 2399 307196615 307197619 0.000000e+00 1408
18 TraesCS7A01G383500 chr3D 92.632 285 21 0 1114 1398 351310589 351310305 6.170000e-111 411
19 TraesCS7A01G383500 chrUn 91.881 1010 76 5 1395 2399 288186251 288185243 0.000000e+00 1406
20 TraesCS7A01G383500 chrUn 91.463 410 33 2 991 1398 99854999 99854590 1.610000e-156 562
21 TraesCS7A01G383500 chr1D 92.339 992 71 5 3 991 207983490 207984479 0.000000e+00 1406
22 TraesCS7A01G383500 chr1D 88.049 410 47 1 991 1398 120951594 120951185 3.590000e-133 484
23 TraesCS7A01G383500 chr4A 90.909 407 28 5 991 1395 734992243 734992642 2.710000e-149 538
24 TraesCS7A01G383500 chr4B 90.418 407 37 2 991 1395 672321260 672321666 3.510000e-148 534
25 TraesCS7A01G383500 chr3B 88.780 410 44 2 991 1398 250471192 250470783 3.560000e-138 501
26 TraesCS7A01G383500 chr6B 88.148 405 46 1 991 1393 514656088 514656492 4.640000e-132 481
27 TraesCS7A01G383500 chr1B 93.396 212 10 1 1187 1398 391066292 391066085 6.440000e-81 311


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G383500 chr7A 558645526 558647924 2398 True 4431 4431 100.000 1 2399 1 chr7A.!!$R1 2398
1 TraesCS7A01G383500 chr5A 445700382 445701385 1003 False 1567 1567 94.836 1395 2399 1 chr5A.!!$F1 1004
2 TraesCS7A01G383500 chr5A 532979803 532980808 1005 True 1502 1502 93.657 1395 2399 1 chr5A.!!$R1 1004
3 TraesCS7A01G383500 chr5A 707739973 707740961 988 True 1441 1441 92.951 1 991 1 chr5A.!!$R3 990
4 TraesCS7A01G383500 chr3A 84900047 84901050 1003 True 1522 1522 94.036 1395 2399 1 chr3A.!!$R1 1004
5 TraesCS7A01G383500 chr3A 85783102 85784104 1002 True 1511 1511 93.831 1395 2399 1 chr3A.!!$R2 1004
6 TraesCS7A01G383500 chr1A 96682873 96683874 1001 False 1502 1502 93.731 1397 2399 1 chr1A.!!$F1 1002
7 TraesCS7A01G383500 chr2A 653911066 653912084 1018 False 1485 1485 92.976 1379 2399 1 chr2A.!!$F1 1020
8 TraesCS7A01G383500 chr7D 406099125 406100119 994 False 1447 1447 92.979 1 991 1 chr7D.!!$F1 990
9 TraesCS7A01G383500 chr5D 90702658 90703644 986 True 1428 1428 92.757 1 991 1 chr5D.!!$R2 990
10 TraesCS7A01G383500 chr5D 70283872 70284871 999 True 1413 1413 92.308 1 992 1 chr5D.!!$R1 991
11 TraesCS7A01G383500 chr5D 219896158 219897142 984 False 1408 1408 92.440 1 990 1 chr5D.!!$F1 989
12 TraesCS7A01G383500 chr2D 351337439 351338426 987 True 1423 1423 92.656 1 991 1 chr2D.!!$R1 990
13 TraesCS7A01G383500 chr6D 453508236 453509220 984 False 1417 1417 92.713 10 991 1 chr6D.!!$F2 981
14 TraesCS7A01G383500 chr6D 133416352 133417338 986 False 1400 1400 92.246 1 991 1 chr6D.!!$F1 990
15 TraesCS7A01G383500 chr3D 531152834 531153846 1012 False 1413 1413 91.913 1390 2399 1 chr3D.!!$F2 1009
16 TraesCS7A01G383500 chr3D 307196615 307197619 1004 False 1408 1408 91.964 1395 2399 1 chr3D.!!$F1 1004
17 TraesCS7A01G383500 chrUn 288185243 288186251 1008 True 1406 1406 91.881 1395 2399 1 chrUn.!!$R2 1004
18 TraesCS7A01G383500 chr1D 207983490 207984479 989 False 1406 1406 92.339 3 991 1 chr1D.!!$F1 988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 619 1.213926 GTCGACTCCCCTAGGGTTCTA 59.786 57.143 26.66 9.0 44.74 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2079 0.32121 TGTGTTGGCCCATACACGAG 60.321 55.0 20.99 0.0 45.84 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.447040 GAATGATAACATGATGTTGACAAGATG 57.553 33.333 20.29 0.00 41.30 2.90
171 172 2.174854 ACCCACTACAAAGCACCTCTTT 59.825 45.455 0.00 0.00 45.43 2.52
189 193 8.636213 CACCTCTTTCCATTGCAAGATAAATAT 58.364 33.333 4.94 0.00 0.00 1.28
211 215 3.685139 TCAAGTTGGCCAAACAAAACA 57.315 38.095 22.47 0.00 41.61 2.83
326 330 6.591834 AGATCTGGTCATAAACTCAAAGTTCG 59.408 38.462 0.00 0.00 37.47 3.95
329 334 5.361427 TGGTCATAAACTCAAAGTTCGTCA 58.639 37.500 0.00 0.00 37.47 4.35
337 342 3.815401 ACTCAAAGTTCGTCAATCCCAAG 59.185 43.478 0.00 0.00 0.00 3.61
356 362 2.639065 AGAAACACACCGCAAAAGAGA 58.361 42.857 0.00 0.00 0.00 3.10
425 441 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
430 446 4.723789 AGAGAGAGAGAGAGAGAGGTGAAT 59.276 45.833 0.00 0.00 0.00 2.57
460 476 3.944015 GCTACTAACTACAGACCCGAAGA 59.056 47.826 0.00 0.00 0.00 2.87
462 478 5.067544 GCTACTAACTACAGACCCGAAGATT 59.932 44.000 0.00 0.00 0.00 2.40
504 520 1.987807 ATCGGAGAGGCACCAATGGG 61.988 60.000 3.55 0.00 43.63 4.00
603 619 1.213926 GTCGACTCCCCTAGGGTTCTA 59.786 57.143 26.66 9.00 44.74 2.10
759 779 2.626683 CCAGGGCCCATTATGTTCCTTT 60.627 50.000 27.56 0.00 0.00 3.11
761 781 3.132824 CAGGGCCCATTATGTTCCTTTTC 59.867 47.826 27.56 0.00 0.00 2.29
762 782 3.103742 GGGCCCATTATGTTCCTTTTCA 58.896 45.455 19.95 0.00 0.00 2.69
993 1024 7.204496 AGATACATTGGAGACGTATCAGTAC 57.796 40.000 12.92 0.00 42.52 2.73
994 1025 6.999272 AGATACATTGGAGACGTATCAGTACT 59.001 38.462 12.92 0.00 42.52 2.73
995 1026 5.502153 ACATTGGAGACGTATCAGTACTC 57.498 43.478 12.92 0.92 0.00 2.59
996 1027 4.948004 ACATTGGAGACGTATCAGTACTCA 59.052 41.667 12.92 0.00 0.00 3.41
997 1028 5.066634 ACATTGGAGACGTATCAGTACTCAG 59.933 44.000 12.92 0.00 0.00 3.35
998 1029 4.482952 TGGAGACGTATCAGTACTCAGA 57.517 45.455 12.92 0.00 0.00 3.27
999 1030 4.443621 TGGAGACGTATCAGTACTCAGAG 58.556 47.826 12.92 0.00 0.00 3.35
1000 1031 4.161754 TGGAGACGTATCAGTACTCAGAGA 59.838 45.833 12.92 0.00 0.00 3.10
1001 1032 5.163290 TGGAGACGTATCAGTACTCAGAGAT 60.163 44.000 12.92 0.00 0.00 2.75
1002 1033 5.178623 GGAGACGTATCAGTACTCAGAGATG 59.821 48.000 12.92 0.12 0.00 2.90
1003 1034 5.919755 AGACGTATCAGTACTCAGAGATGA 58.080 41.667 3.79 5.87 0.00 2.92
1004 1035 5.756347 AGACGTATCAGTACTCAGAGATGAC 59.244 44.000 3.79 0.00 0.00 3.06
1005 1036 5.429130 ACGTATCAGTACTCAGAGATGACA 58.571 41.667 3.79 0.00 0.00 3.58
1006 1037 5.525745 ACGTATCAGTACTCAGAGATGACAG 59.474 44.000 3.79 3.83 0.00 3.51
1007 1038 5.755861 CGTATCAGTACTCAGAGATGACAGA 59.244 44.000 3.79 2.34 0.00 3.41
1008 1039 6.073819 CGTATCAGTACTCAGAGATGACAGAG 60.074 46.154 3.79 0.00 0.00 3.35
1009 1040 4.522114 TCAGTACTCAGAGATGACAGAGG 58.478 47.826 3.79 0.00 32.52 3.69
1010 1041 4.018870 TCAGTACTCAGAGATGACAGAGGT 60.019 45.833 3.79 0.00 32.52 3.85
1011 1042 5.189934 TCAGTACTCAGAGATGACAGAGGTA 59.810 44.000 3.79 0.00 32.52 3.08
1012 1043 5.883115 CAGTACTCAGAGATGACAGAGGTAA 59.117 44.000 3.79 0.00 32.52 2.85
1013 1044 6.375736 CAGTACTCAGAGATGACAGAGGTAAA 59.624 42.308 3.79 0.00 32.52 2.01
1014 1045 7.068103 CAGTACTCAGAGATGACAGAGGTAAAT 59.932 40.741 3.79 0.00 32.52 1.40
1015 1046 6.865834 ACTCAGAGATGACAGAGGTAAATT 57.134 37.500 3.79 0.00 32.52 1.82
1016 1047 7.251321 ACTCAGAGATGACAGAGGTAAATTT 57.749 36.000 3.79 0.00 32.52 1.82
1017 1048 7.327214 ACTCAGAGATGACAGAGGTAAATTTC 58.673 38.462 3.79 0.00 32.52 2.17
1018 1049 7.180051 ACTCAGAGATGACAGAGGTAAATTTCT 59.820 37.037 3.79 0.00 32.52 2.52
1019 1050 7.911651 TCAGAGATGACAGAGGTAAATTTCTT 58.088 34.615 0.00 0.00 0.00 2.52
1020 1051 7.821359 TCAGAGATGACAGAGGTAAATTTCTTG 59.179 37.037 0.00 0.00 0.00 3.02
1021 1052 6.597280 AGAGATGACAGAGGTAAATTTCTTGC 59.403 38.462 0.00 0.00 0.00 4.01
1022 1053 6.240894 AGATGACAGAGGTAAATTTCTTGCA 58.759 36.000 0.00 0.00 0.00 4.08
1023 1054 5.947228 TGACAGAGGTAAATTTCTTGCAG 57.053 39.130 0.00 0.00 0.00 4.41
1024 1055 4.761739 TGACAGAGGTAAATTTCTTGCAGG 59.238 41.667 0.00 0.00 0.00 4.85
1025 1056 4.082125 ACAGAGGTAAATTTCTTGCAGGG 58.918 43.478 0.00 0.00 0.00 4.45
1026 1057 3.445096 CAGAGGTAAATTTCTTGCAGGGG 59.555 47.826 0.00 0.00 0.00 4.79
1027 1058 2.760650 GAGGTAAATTTCTTGCAGGGGG 59.239 50.000 0.00 0.00 0.00 5.40
1028 1059 2.381961 AGGTAAATTTCTTGCAGGGGGA 59.618 45.455 0.00 0.00 0.00 4.81
1029 1060 3.012844 AGGTAAATTTCTTGCAGGGGGAT 59.987 43.478 0.00 0.00 0.00 3.85
1030 1061 3.132824 GGTAAATTTCTTGCAGGGGGATG 59.867 47.826 0.00 0.00 0.00 3.51
1031 1062 1.870064 AATTTCTTGCAGGGGGATGG 58.130 50.000 0.00 0.00 0.00 3.51
1032 1063 1.009997 ATTTCTTGCAGGGGGATGGA 58.990 50.000 0.00 0.00 0.00 3.41
1033 1064 0.783206 TTTCTTGCAGGGGGATGGAA 59.217 50.000 0.00 0.00 0.00 3.53
1034 1065 0.783206 TTCTTGCAGGGGGATGGAAA 59.217 50.000 0.00 0.00 29.57 3.13
1035 1066 0.783206 TCTTGCAGGGGGATGGAAAA 59.217 50.000 0.00 0.00 29.57 2.29
1036 1067 1.148867 TCTTGCAGGGGGATGGAAAAA 59.851 47.619 0.00 0.00 29.57 1.94
1037 1068 2.190538 CTTGCAGGGGGATGGAAAAAT 58.809 47.619 0.00 0.00 29.57 1.82
1038 1069 3.012274 TCTTGCAGGGGGATGGAAAAATA 59.988 43.478 0.00 0.00 29.57 1.40
1039 1070 3.030873 TGCAGGGGGATGGAAAAATAG 57.969 47.619 0.00 0.00 0.00 1.73
1040 1071 2.584965 TGCAGGGGGATGGAAAAATAGA 59.415 45.455 0.00 0.00 0.00 1.98
1041 1072 3.207321 TGCAGGGGGATGGAAAAATAGAT 59.793 43.478 0.00 0.00 0.00 1.98
1042 1073 4.226384 GCAGGGGGATGGAAAAATAGATT 58.774 43.478 0.00 0.00 0.00 2.40
1043 1074 4.039609 GCAGGGGGATGGAAAAATAGATTG 59.960 45.833 0.00 0.00 0.00 2.67
1044 1075 4.590222 CAGGGGGATGGAAAAATAGATTGG 59.410 45.833 0.00 0.00 0.00 3.16
1045 1076 4.235164 AGGGGGATGGAAAAATAGATTGGT 59.765 41.667 0.00 0.00 0.00 3.67
1046 1077 4.344968 GGGGGATGGAAAAATAGATTGGTG 59.655 45.833 0.00 0.00 0.00 4.17
1047 1078 4.202253 GGGGATGGAAAAATAGATTGGTGC 60.202 45.833 0.00 0.00 0.00 5.01
1048 1079 4.499696 GGGATGGAAAAATAGATTGGTGCG 60.500 45.833 0.00 0.00 0.00 5.34
1049 1080 3.502191 TGGAAAAATAGATTGGTGCGC 57.498 42.857 0.00 0.00 0.00 6.09
1050 1081 2.822561 TGGAAAAATAGATTGGTGCGCA 59.177 40.909 5.66 5.66 0.00 6.09
1051 1082 3.119531 TGGAAAAATAGATTGGTGCGCAG 60.120 43.478 12.22 0.00 0.00 5.18
1052 1083 3.128589 GGAAAAATAGATTGGTGCGCAGA 59.871 43.478 12.22 0.00 0.00 4.26
1053 1084 3.764885 AAAATAGATTGGTGCGCAGAC 57.235 42.857 12.22 7.90 0.00 3.51
1054 1085 1.290203 AATAGATTGGTGCGCAGACG 58.710 50.000 12.22 0.00 44.07 4.18
1055 1086 0.175760 ATAGATTGGTGCGCAGACGT 59.824 50.000 12.22 0.00 42.83 4.34
1056 1087 0.457853 TAGATTGGTGCGCAGACGTC 60.458 55.000 12.22 7.70 42.83 4.34
1057 1088 2.740714 GATTGGTGCGCAGACGTCC 61.741 63.158 12.22 9.06 42.83 4.79
1058 1089 3.240134 ATTGGTGCGCAGACGTCCT 62.240 57.895 12.22 0.00 42.83 3.85
1059 1090 4.662961 TGGTGCGCAGACGTCCTG 62.663 66.667 12.22 11.01 45.67 3.86
1065 1096 4.385405 GCAGACGTCCTGGCAGCT 62.385 66.667 13.01 0.00 43.13 4.24
1066 1097 2.433838 CAGACGTCCTGGCAGCTG 60.434 66.667 13.01 10.11 39.23 4.24
1067 1098 2.601666 AGACGTCCTGGCAGCTGA 60.602 61.111 20.43 0.00 0.00 4.26
1068 1099 2.210013 AGACGTCCTGGCAGCTGAA 61.210 57.895 20.43 3.26 0.00 3.02
1069 1100 1.739562 GACGTCCTGGCAGCTGAAG 60.740 63.158 20.43 13.83 0.00 3.02
1070 1101 3.123620 CGTCCTGGCAGCTGAAGC 61.124 66.667 20.43 0.84 42.49 3.86
1081 1112 2.450619 GCTGAAGCTTCGACACTCC 58.549 57.895 21.11 0.00 38.21 3.85
1082 1113 0.319900 GCTGAAGCTTCGACACTCCA 60.320 55.000 21.11 1.07 38.21 3.86
1083 1114 1.873903 GCTGAAGCTTCGACACTCCAA 60.874 52.381 21.11 0.00 38.21 3.53
1084 1115 2.693069 CTGAAGCTTCGACACTCCAAT 58.307 47.619 21.11 0.00 0.00 3.16
1085 1116 3.849911 CTGAAGCTTCGACACTCCAATA 58.150 45.455 21.11 0.00 0.00 1.90
1086 1117 4.437239 CTGAAGCTTCGACACTCCAATAT 58.563 43.478 21.11 0.00 0.00 1.28
1087 1118 4.183865 TGAAGCTTCGACACTCCAATATG 58.816 43.478 21.11 0.00 0.00 1.78
1088 1119 3.185246 AGCTTCGACACTCCAATATGG 57.815 47.619 0.00 0.00 39.43 2.74
1089 1120 2.158900 AGCTTCGACACTCCAATATGGG 60.159 50.000 0.00 0.00 38.32 4.00
1090 1121 2.420129 GCTTCGACACTCCAATATGGGT 60.420 50.000 0.00 0.00 38.32 4.51
1091 1122 3.873910 CTTCGACACTCCAATATGGGTT 58.126 45.455 0.00 0.00 38.32 4.11
1092 1123 3.260475 TCGACACTCCAATATGGGTTG 57.740 47.619 0.00 0.00 38.32 3.77
1093 1124 2.569853 TCGACACTCCAATATGGGTTGT 59.430 45.455 6.00 6.00 38.32 3.32
1094 1125 2.936498 CGACACTCCAATATGGGTTGTC 59.064 50.000 17.42 17.42 41.89 3.18
1095 1126 3.279434 GACACTCCAATATGGGTTGTCC 58.721 50.000 16.91 5.48 40.65 4.02
1107 1138 2.561478 GGTTGTCCCTAGCACAAAGA 57.439 50.000 6.98 0.00 35.53 2.52
1108 1139 2.858745 GGTTGTCCCTAGCACAAAGAA 58.141 47.619 6.98 0.00 35.53 2.52
1109 1140 3.421844 GGTTGTCCCTAGCACAAAGAAT 58.578 45.455 6.98 0.00 35.53 2.40
1110 1141 4.585879 GGTTGTCCCTAGCACAAAGAATA 58.414 43.478 6.98 0.00 35.53 1.75
1111 1142 4.636206 GGTTGTCCCTAGCACAAAGAATAG 59.364 45.833 6.98 0.00 35.53 1.73
1112 1143 4.487714 TGTCCCTAGCACAAAGAATAGG 57.512 45.455 0.00 0.00 35.54 2.57
1114 1145 3.933861 CCCTAGCACAAAGAATAGGGT 57.066 47.619 7.81 0.00 46.43 4.34
1115 1146 3.545703 CCCTAGCACAAAGAATAGGGTG 58.454 50.000 7.81 0.00 46.43 4.61
1135 1166 5.796350 GTGCAACCGTCTAGTTATCAATT 57.204 39.130 0.00 0.00 0.00 2.32
1136 1167 5.796813 GTGCAACCGTCTAGTTATCAATTC 58.203 41.667 0.00 0.00 0.00 2.17
1137 1168 5.581085 GTGCAACCGTCTAGTTATCAATTCT 59.419 40.000 0.00 0.00 0.00 2.40
1138 1169 6.092259 GTGCAACCGTCTAGTTATCAATTCTT 59.908 38.462 0.00 0.00 0.00 2.52
1139 1170 7.277098 GTGCAACCGTCTAGTTATCAATTCTTA 59.723 37.037 0.00 0.00 0.00 2.10
1140 1171 7.277098 TGCAACCGTCTAGTTATCAATTCTTAC 59.723 37.037 0.00 0.00 0.00 2.34
1141 1172 7.277098 GCAACCGTCTAGTTATCAATTCTTACA 59.723 37.037 0.00 0.00 0.00 2.41
1142 1173 9.146984 CAACCGTCTAGTTATCAATTCTTACAA 57.853 33.333 0.00 0.00 0.00 2.41
1143 1174 9.886132 AACCGTCTAGTTATCAATTCTTACAAT 57.114 29.630 0.00 0.00 0.00 2.71
1144 1175 9.530633 ACCGTCTAGTTATCAATTCTTACAATC 57.469 33.333 0.00 0.00 0.00 2.67
1145 1176 9.751542 CCGTCTAGTTATCAATTCTTACAATCT 57.248 33.333 0.00 0.00 0.00 2.40
1155 1186 9.995003 ATCAATTCTTACAATCTAGAGGTCATC 57.005 33.333 0.00 0.00 0.00 2.92
1156 1187 8.138074 TCAATTCTTACAATCTAGAGGTCATCG 58.862 37.037 0.00 0.00 0.00 3.84
1157 1188 7.825331 ATTCTTACAATCTAGAGGTCATCGA 57.175 36.000 0.00 0.00 0.00 3.59
1158 1189 6.869315 TCTTACAATCTAGAGGTCATCGAG 57.131 41.667 0.00 0.00 32.28 4.04
1159 1190 6.592870 TCTTACAATCTAGAGGTCATCGAGA 58.407 40.000 0.00 0.00 42.90 4.04
1160 1191 6.483974 TCTTACAATCTAGAGGTCATCGAGAC 59.516 42.308 0.00 6.50 41.73 3.36
1172 1203 4.901814 GTCATCGAGACAATGAACAATGG 58.098 43.478 9.30 0.00 46.77 3.16
1173 1204 4.631377 GTCATCGAGACAATGAACAATGGA 59.369 41.667 9.30 0.00 46.77 3.41
1174 1205 4.872124 TCATCGAGACAATGAACAATGGAG 59.128 41.667 0.00 0.00 30.37 3.86
1175 1206 3.599343 TCGAGACAATGAACAATGGAGG 58.401 45.455 0.00 0.00 0.00 4.30
1176 1207 3.260632 TCGAGACAATGAACAATGGAGGA 59.739 43.478 0.00 0.00 0.00 3.71
1177 1208 3.620374 CGAGACAATGAACAATGGAGGAG 59.380 47.826 0.00 0.00 0.00 3.69
1178 1209 3.944015 GAGACAATGAACAATGGAGGAGG 59.056 47.826 0.00 0.00 0.00 4.30
1179 1210 3.331889 AGACAATGAACAATGGAGGAGGT 59.668 43.478 0.00 0.00 0.00 3.85
1180 1211 3.690460 ACAATGAACAATGGAGGAGGTC 58.310 45.455 0.00 0.00 0.00 3.85
1181 1212 3.074390 ACAATGAACAATGGAGGAGGTCA 59.926 43.478 0.00 0.00 0.00 4.02
1182 1213 4.264083 ACAATGAACAATGGAGGAGGTCAT 60.264 41.667 0.00 0.00 0.00 3.06
1183 1214 3.354948 TGAACAATGGAGGAGGTCATG 57.645 47.619 0.00 0.00 0.00 3.07
1184 1215 2.019984 GAACAATGGAGGAGGTCATGC 58.980 52.381 0.00 0.00 0.00 4.06
1185 1216 0.107508 ACAATGGAGGAGGTCATGCG 60.108 55.000 0.00 0.00 0.00 4.73
1186 1217 0.178767 CAATGGAGGAGGTCATGCGA 59.821 55.000 0.00 0.00 0.00 5.10
1187 1218 0.467384 AATGGAGGAGGTCATGCGAG 59.533 55.000 0.00 0.00 0.00 5.03
1188 1219 0.689080 ATGGAGGAGGTCATGCGAGT 60.689 55.000 0.00 0.00 0.00 4.18
1189 1220 1.142748 GGAGGAGGTCATGCGAGTG 59.857 63.158 0.00 0.00 0.00 3.51
1190 1221 1.520342 GAGGAGGTCATGCGAGTGC 60.520 63.158 0.00 0.00 43.20 4.40
1203 1234 4.704833 AGTGCAGCGGCGGTGATT 62.705 61.111 39.35 21.54 45.35 2.57
1204 1235 3.737172 GTGCAGCGGCGGTGATTT 61.737 61.111 39.35 0.00 45.35 2.17
1205 1236 2.983030 TGCAGCGGCGGTGATTTT 60.983 55.556 39.35 0.00 45.35 1.82
1206 1237 2.258286 GCAGCGGCGGTGATTTTT 59.742 55.556 39.35 0.00 32.22 1.94
1207 1238 2.088178 GCAGCGGCGGTGATTTTTG 61.088 57.895 39.35 14.40 32.22 2.44
1208 1239 1.578926 CAGCGGCGGTGATTTTTGA 59.421 52.632 33.21 0.00 32.22 2.69
1209 1240 0.171007 CAGCGGCGGTGATTTTTGAT 59.829 50.000 33.21 0.00 32.22 2.57
1210 1241 0.171007 AGCGGCGGTGATTTTTGATG 59.829 50.000 12.25 0.00 0.00 3.07
1211 1242 0.170116 GCGGCGGTGATTTTTGATGA 59.830 50.000 9.78 0.00 0.00 2.92
1212 1243 1.202290 GCGGCGGTGATTTTTGATGAT 60.202 47.619 9.78 0.00 0.00 2.45
1213 1244 2.735126 GCGGCGGTGATTTTTGATGATT 60.735 45.455 9.78 0.00 0.00 2.57
1214 1245 2.853594 CGGCGGTGATTTTTGATGATTG 59.146 45.455 0.00 0.00 0.00 2.67
1215 1246 3.673052 CGGCGGTGATTTTTGATGATTGT 60.673 43.478 0.00 0.00 0.00 2.71
1216 1247 4.244862 GGCGGTGATTTTTGATGATTGTT 58.755 39.130 0.00 0.00 0.00 2.83
1217 1248 5.406649 GGCGGTGATTTTTGATGATTGTTA 58.593 37.500 0.00 0.00 0.00 2.41
1218 1249 6.042143 GGCGGTGATTTTTGATGATTGTTAT 58.958 36.000 0.00 0.00 0.00 1.89
1219 1250 6.198966 GGCGGTGATTTTTGATGATTGTTATC 59.801 38.462 0.00 0.00 0.00 1.75
1220 1251 6.751425 GCGGTGATTTTTGATGATTGTTATCA 59.249 34.615 0.00 0.00 44.52 2.15
1234 1265 8.969260 TGATTGTTATCATCTAGCTTGTGATT 57.031 30.769 14.48 2.17 35.87 2.57
1235 1266 9.399797 TGATTGTTATCATCTAGCTTGTGATTT 57.600 29.630 14.48 1.26 35.87 2.17
1238 1269 8.213518 TGTTATCATCTAGCTTGTGATTTTCC 57.786 34.615 14.48 5.73 34.62 3.13
1239 1270 8.049117 TGTTATCATCTAGCTTGTGATTTTCCT 58.951 33.333 14.48 0.00 34.62 3.36
1240 1271 9.547753 GTTATCATCTAGCTTGTGATTTTCCTA 57.452 33.333 14.48 0.00 34.62 2.94
1243 1274 9.638176 ATCATCTAGCTTGTGATTTTCCTATTT 57.362 29.630 0.00 0.00 28.62 1.40
1244 1275 9.466497 TCATCTAGCTTGTGATTTTCCTATTTT 57.534 29.630 0.00 0.00 0.00 1.82
1249 1280 8.422577 AGCTTGTGATTTTCCTATTTTTAGGT 57.577 30.769 0.00 0.00 38.38 3.08
1250 1281 8.870116 AGCTTGTGATTTTCCTATTTTTAGGTT 58.130 29.630 0.00 0.00 38.38 3.50
1251 1282 9.489084 GCTTGTGATTTTCCTATTTTTAGGTTT 57.511 29.630 0.00 0.00 38.38 3.27
1271 1302 8.045176 AGGTTTGAACATTGTAATAGAGAAGC 57.955 34.615 0.00 0.00 0.00 3.86
1272 1303 7.665559 AGGTTTGAACATTGTAATAGAGAAGCA 59.334 33.333 0.00 0.00 0.00 3.91
1273 1304 8.462016 GGTTTGAACATTGTAATAGAGAAGCAT 58.538 33.333 0.00 0.00 0.00 3.79
1284 1315 9.535170 TGTAATAGAGAAGCATATAAGGTAGCT 57.465 33.333 0.00 0.00 39.37 3.32
1286 1317 8.657387 AATAGAGAAGCATATAAGGTAGCTCA 57.343 34.615 0.00 0.00 36.07 4.26
1287 1318 6.339587 AGAGAAGCATATAAGGTAGCTCAC 57.660 41.667 0.00 0.00 36.07 3.51
1288 1319 5.048364 AGAGAAGCATATAAGGTAGCTCACG 60.048 44.000 0.00 0.00 36.07 4.35
1289 1320 4.827835 AGAAGCATATAAGGTAGCTCACGA 59.172 41.667 0.00 0.00 36.07 4.35
1290 1321 5.302059 AGAAGCATATAAGGTAGCTCACGAA 59.698 40.000 0.00 0.00 36.07 3.85
1291 1322 4.872664 AGCATATAAGGTAGCTCACGAAC 58.127 43.478 0.00 0.00 30.05 3.95
1292 1323 4.585162 AGCATATAAGGTAGCTCACGAACT 59.415 41.667 0.00 0.00 30.05 3.01
1293 1324 5.768662 AGCATATAAGGTAGCTCACGAACTA 59.231 40.000 0.00 0.00 30.05 2.24
1294 1325 6.072397 AGCATATAAGGTAGCTCACGAACTAG 60.072 42.308 0.00 0.00 30.05 2.57
1295 1326 2.943449 AAGGTAGCTCACGAACTAGC 57.057 50.000 0.00 0.00 39.08 3.42
1301 1332 2.943449 GCTCACGAACTAGCTAGGTT 57.057 50.000 24.35 15.38 35.80 3.50
1303 1334 3.954999 GCTCACGAACTAGCTAGGTTAG 58.045 50.000 24.35 17.64 35.80 2.34
1304 1335 3.377798 GCTCACGAACTAGCTAGGTTAGT 59.622 47.826 24.35 18.25 35.80 2.24
1305 1336 4.731193 GCTCACGAACTAGCTAGGTTAGTG 60.731 50.000 28.25 28.25 45.09 2.74
1306 1337 4.959596 CACGAACTAGCTAGGTTAGTGA 57.040 45.455 29.37 0.00 45.91 3.41
1307 1338 4.634883 TCACGAACTAGCTAGGTTAGTGAG 59.365 45.833 30.64 17.13 46.23 3.51
1308 1339 4.634883 CACGAACTAGCTAGGTTAGTGAGA 59.365 45.833 29.37 0.00 45.91 3.27
1309 1340 5.297278 CACGAACTAGCTAGGTTAGTGAGAT 59.703 44.000 29.37 5.22 45.91 2.75
1310 1341 5.887035 ACGAACTAGCTAGGTTAGTGAGATT 59.113 40.000 24.35 5.72 32.87 2.40
1311 1342 6.377712 ACGAACTAGCTAGGTTAGTGAGATTT 59.622 38.462 24.35 5.21 32.87 2.17
1312 1343 7.093858 ACGAACTAGCTAGGTTAGTGAGATTTT 60.094 37.037 24.35 5.01 32.87 1.82
1313 1344 7.432838 CGAACTAGCTAGGTTAGTGAGATTTTC 59.567 40.741 24.35 12.40 30.42 2.29
1314 1345 7.964666 ACTAGCTAGGTTAGTGAGATTTTCT 57.035 36.000 24.35 0.00 28.89 2.52
1315 1346 7.777095 ACTAGCTAGGTTAGTGAGATTTTCTG 58.223 38.462 24.35 0.00 28.89 3.02
1316 1347 5.423886 AGCTAGGTTAGTGAGATTTTCTGC 58.576 41.667 0.00 0.00 0.00 4.26
1317 1348 4.268884 GCTAGGTTAGTGAGATTTTCTGCG 59.731 45.833 0.00 0.00 0.00 5.18
1318 1349 4.537135 AGGTTAGTGAGATTTTCTGCGA 57.463 40.909 0.00 0.00 0.00 5.10
1319 1350 4.246458 AGGTTAGTGAGATTTTCTGCGAC 58.754 43.478 0.00 0.00 0.00 5.19
1320 1351 4.021016 AGGTTAGTGAGATTTTCTGCGACT 60.021 41.667 0.00 0.00 0.00 4.18
1321 1352 4.691216 GGTTAGTGAGATTTTCTGCGACTT 59.309 41.667 0.00 0.00 0.00 3.01
1322 1353 5.867716 GGTTAGTGAGATTTTCTGCGACTTA 59.132 40.000 0.00 0.00 0.00 2.24
1323 1354 6.535508 GGTTAGTGAGATTTTCTGCGACTTAT 59.464 38.462 0.00 0.00 0.00 1.73
1324 1355 7.394872 GTTAGTGAGATTTTCTGCGACTTATG 58.605 38.462 0.00 0.00 0.00 1.90
1325 1356 5.724328 AGTGAGATTTTCTGCGACTTATGA 58.276 37.500 0.00 0.00 0.00 2.15
1326 1357 6.344500 AGTGAGATTTTCTGCGACTTATGAT 58.656 36.000 0.00 0.00 0.00 2.45
1327 1358 6.820656 AGTGAGATTTTCTGCGACTTATGATT 59.179 34.615 0.00 0.00 0.00 2.57
1328 1359 6.904011 GTGAGATTTTCTGCGACTTATGATTG 59.096 38.462 0.00 0.00 0.00 2.67
1329 1360 6.037500 TGAGATTTTCTGCGACTTATGATTGG 59.962 38.462 0.00 0.00 0.00 3.16
1330 1361 5.882557 AGATTTTCTGCGACTTATGATTGGT 59.117 36.000 0.00 0.00 0.00 3.67
1331 1362 5.957842 TTTTCTGCGACTTATGATTGGTT 57.042 34.783 0.00 0.00 0.00 3.67
1332 1363 5.957842 TTTCTGCGACTTATGATTGGTTT 57.042 34.783 0.00 0.00 0.00 3.27
1333 1364 4.944962 TCTGCGACTTATGATTGGTTTG 57.055 40.909 0.00 0.00 0.00 2.93
1334 1365 4.574892 TCTGCGACTTATGATTGGTTTGA 58.425 39.130 0.00 0.00 0.00 2.69
1335 1366 4.631377 TCTGCGACTTATGATTGGTTTGAG 59.369 41.667 0.00 0.00 0.00 3.02
1336 1367 3.689161 TGCGACTTATGATTGGTTTGAGG 59.311 43.478 0.00 0.00 0.00 3.86
1337 1368 3.938963 GCGACTTATGATTGGTTTGAGGA 59.061 43.478 0.00 0.00 0.00 3.71
1338 1369 4.394920 GCGACTTATGATTGGTTTGAGGAA 59.605 41.667 0.00 0.00 0.00 3.36
1339 1370 5.673818 GCGACTTATGATTGGTTTGAGGAAC 60.674 44.000 0.00 0.00 37.53 3.62
1349 1380 3.282831 GTTTGAGGAACCGTTGAATGG 57.717 47.619 0.97 0.97 31.85 3.16
1350 1381 2.882137 GTTTGAGGAACCGTTGAATGGA 59.118 45.455 11.00 0.00 31.85 3.41
1351 1382 2.940994 TGAGGAACCGTTGAATGGAA 57.059 45.000 11.00 0.00 0.00 3.53
1352 1383 3.433306 TGAGGAACCGTTGAATGGAAT 57.567 42.857 11.00 0.00 0.00 3.01
1353 1384 3.761897 TGAGGAACCGTTGAATGGAATT 58.238 40.909 11.00 0.00 40.93 2.17
1354 1385 3.505680 TGAGGAACCGTTGAATGGAATTG 59.494 43.478 11.00 0.00 36.07 2.32
1355 1386 3.496331 AGGAACCGTTGAATGGAATTGT 58.504 40.909 11.00 0.00 36.07 2.71
1356 1387 4.658063 AGGAACCGTTGAATGGAATTGTA 58.342 39.130 11.00 0.00 36.07 2.41
1357 1388 5.074115 AGGAACCGTTGAATGGAATTGTAA 58.926 37.500 11.00 0.00 36.07 2.41
1358 1389 5.536916 AGGAACCGTTGAATGGAATTGTAAA 59.463 36.000 11.00 0.00 36.07 2.01
1359 1390 6.210584 AGGAACCGTTGAATGGAATTGTAAAT 59.789 34.615 11.00 0.00 36.07 1.40
1360 1391 7.394923 AGGAACCGTTGAATGGAATTGTAAATA 59.605 33.333 11.00 0.00 36.07 1.40
1361 1392 8.194769 GGAACCGTTGAATGGAATTGTAAATAT 58.805 33.333 11.00 0.00 36.07 1.28
1362 1393 9.233232 GAACCGTTGAATGGAATTGTAAATATC 57.767 33.333 11.00 0.00 36.07 1.63
1363 1394 7.712797 ACCGTTGAATGGAATTGTAAATATCC 58.287 34.615 11.00 0.00 36.07 2.59
1364 1395 7.559897 ACCGTTGAATGGAATTGTAAATATCCT 59.440 33.333 11.00 0.00 36.07 3.24
1365 1396 8.076178 CCGTTGAATGGAATTGTAAATATCCTC 58.924 37.037 0.00 0.00 36.07 3.71
1366 1397 8.620416 CGTTGAATGGAATTGTAAATATCCTCA 58.380 33.333 0.00 0.00 36.07 3.86
1367 1398 9.736023 GTTGAATGGAATTGTAAATATCCTCAC 57.264 33.333 0.00 0.00 36.07 3.51
1368 1399 9.473007 TTGAATGGAATTGTAAATATCCTCACA 57.527 29.630 0.00 0.00 36.07 3.58
1369 1400 9.123902 TGAATGGAATTGTAAATATCCTCACAG 57.876 33.333 0.00 0.00 36.07 3.66
1370 1401 9.342308 GAATGGAATTGTAAATATCCTCACAGA 57.658 33.333 0.00 0.00 36.07 3.41
1371 1402 8.682936 ATGGAATTGTAAATATCCTCACAGAC 57.317 34.615 0.00 0.00 33.02 3.51
1372 1403 6.761242 TGGAATTGTAAATATCCTCACAGACG 59.239 38.462 0.00 0.00 33.02 4.18
1373 1404 6.984474 GGAATTGTAAATATCCTCACAGACGA 59.016 38.462 0.00 0.00 0.00 4.20
1374 1405 7.657761 GGAATTGTAAATATCCTCACAGACGAT 59.342 37.037 0.00 0.00 0.00 3.73
1375 1406 7.953158 ATTGTAAATATCCTCACAGACGATG 57.047 36.000 0.00 0.00 0.00 3.84
1376 1407 6.465439 TGTAAATATCCTCACAGACGATGT 57.535 37.500 0.00 0.00 45.43 3.06
1377 1408 7.576861 TGTAAATATCCTCACAGACGATGTA 57.423 36.000 0.00 0.00 41.41 2.29
1378 1409 8.178313 TGTAAATATCCTCACAGACGATGTAT 57.822 34.615 0.00 0.00 41.41 2.29
1379 1410 8.297426 TGTAAATATCCTCACAGACGATGTATC 58.703 37.037 0.00 0.00 41.41 2.24
1380 1411 7.531857 AAATATCCTCACAGACGATGTATCT 57.468 36.000 0.00 0.00 41.41 1.98
1381 1412 8.637196 AAATATCCTCACAGACGATGTATCTA 57.363 34.615 0.00 0.00 41.41 1.98
1382 1413 8.815565 AATATCCTCACAGACGATGTATCTAT 57.184 34.615 0.00 0.00 41.41 1.98
1383 1414 8.815565 ATATCCTCACAGACGATGTATCTATT 57.184 34.615 0.00 0.00 41.41 1.73
1384 1415 6.961360 TCCTCACAGACGATGTATCTATTT 57.039 37.500 0.00 0.00 41.41 1.40
1385 1416 7.348080 TCCTCACAGACGATGTATCTATTTT 57.652 36.000 0.00 0.00 41.41 1.82
1386 1417 8.459911 TCCTCACAGACGATGTATCTATTTTA 57.540 34.615 0.00 0.00 41.41 1.52
1387 1418 9.078990 TCCTCACAGACGATGTATCTATTTTAT 57.921 33.333 0.00 0.00 41.41 1.40
1525 1557 1.614413 GAGGAGTTGTGGTCTTCTCGT 59.386 52.381 0.00 0.00 29.43 4.18
1574 1606 4.480537 TGATATTGGTGGGGTTAGTTGGAT 59.519 41.667 0.00 0.00 0.00 3.41
1627 1661 2.203788 TGGGTCCGCCTCTGTCTT 60.204 61.111 0.00 0.00 34.45 3.01
1710 1745 3.824443 TGACCACTCTGTCTTACGATTGA 59.176 43.478 0.00 0.00 36.21 2.57
1740 1775 4.091509 GGATGGATTACTAATTGTAGCGCG 59.908 45.833 0.00 0.00 32.08 6.86
1916 1952 3.502123 AAATTTCTCCCTTGGACGACA 57.498 42.857 0.00 0.00 0.00 4.35
2160 2197 2.816411 TGACCTCAAAGACCCGACTAT 58.184 47.619 0.00 0.00 0.00 2.12
2166 2203 2.301870 TCAAAGACCCGACTATGTGCTT 59.698 45.455 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.776158 CGATGTGGTCTATCTCTACATAAATAC 57.224 37.037 0.00 0.00 32.58 1.89
53 54 7.818997 AACGATGTGGTCTATCTCTACATAA 57.181 36.000 0.00 0.00 32.58 1.90
70 71 6.255020 CGTTGCTACTAAGGATAAAACGATGT 59.745 38.462 0.00 0.00 41.05 3.06
111 112 1.352083 TCCCAGTGACAGAAAGGGAG 58.648 55.000 0.00 0.00 43.39 4.30
189 193 5.112686 GTGTTTTGTTTGGCCAACTTGATA 58.887 37.500 20.35 0.00 36.21 2.15
211 215 6.924060 CCTCGTATTTCTTCTCCGATATTTGT 59.076 38.462 0.00 0.00 0.00 2.83
308 312 7.015877 GGATTGACGAACTTTGAGTTTATGAC 58.984 38.462 0.00 0.00 38.80 3.06
326 330 2.031157 CGGTGTGTTTCTTGGGATTGAC 60.031 50.000 0.00 0.00 0.00 3.18
329 334 0.958822 GCGGTGTGTTTCTTGGGATT 59.041 50.000 0.00 0.00 0.00 3.01
337 342 3.300009 CATCTCTTTTGCGGTGTGTTTC 58.700 45.455 0.00 0.00 0.00 2.78
356 362 5.487845 TCTCTTGGAGATCCATATGATGCAT 59.512 40.000 3.65 0.00 46.97 3.96
425 441 8.167605 TGTAGTTAGTAGCTAGATGGATTCAC 57.832 38.462 0.00 0.00 0.00 3.18
430 446 6.297582 GGTCTGTAGTTAGTAGCTAGATGGA 58.702 44.000 0.00 0.00 0.00 3.41
460 476 6.649141 TGATGCGTGAGTAGTTCTTTGTAAAT 59.351 34.615 0.00 0.00 0.00 1.40
462 478 5.534407 TGATGCGTGAGTAGTTCTTTGTAA 58.466 37.500 0.00 0.00 0.00 2.41
849 879 4.039852 TGACATAGTGCCAAGTGTCAGTTA 59.960 41.667 3.18 0.00 44.14 2.24
992 1023 6.865834 AATTTACCTCTGTCATCTCTGAGT 57.134 37.500 4.32 0.00 33.54 3.41
993 1024 7.555087 AGAAATTTACCTCTGTCATCTCTGAG 58.445 38.462 0.00 0.00 34.61 3.35
994 1025 7.487822 AGAAATTTACCTCTGTCATCTCTGA 57.512 36.000 0.00 0.00 0.00 3.27
995 1026 7.413877 GCAAGAAATTTACCTCTGTCATCTCTG 60.414 40.741 0.00 0.00 0.00 3.35
996 1027 6.597280 GCAAGAAATTTACCTCTGTCATCTCT 59.403 38.462 0.00 0.00 0.00 3.10
997 1028 6.372659 TGCAAGAAATTTACCTCTGTCATCTC 59.627 38.462 0.00 0.00 0.00 2.75
998 1029 6.240894 TGCAAGAAATTTACCTCTGTCATCT 58.759 36.000 0.00 0.00 0.00 2.90
999 1030 6.404074 CCTGCAAGAAATTTACCTCTGTCATC 60.404 42.308 0.00 0.00 34.07 2.92
1000 1031 5.416952 CCTGCAAGAAATTTACCTCTGTCAT 59.583 40.000 0.00 0.00 34.07 3.06
1001 1032 4.761739 CCTGCAAGAAATTTACCTCTGTCA 59.238 41.667 0.00 0.00 34.07 3.58
1002 1033 4.156739 CCCTGCAAGAAATTTACCTCTGTC 59.843 45.833 0.00 0.00 34.07 3.51
1003 1034 4.082125 CCCTGCAAGAAATTTACCTCTGT 58.918 43.478 0.00 0.00 34.07 3.41
1004 1035 3.445096 CCCCTGCAAGAAATTTACCTCTG 59.555 47.826 0.00 0.00 34.07 3.35
1005 1036 3.564352 CCCCCTGCAAGAAATTTACCTCT 60.564 47.826 0.00 0.00 34.07 3.69
1006 1037 2.760650 CCCCCTGCAAGAAATTTACCTC 59.239 50.000 0.00 0.00 34.07 3.85
1007 1038 2.381961 TCCCCCTGCAAGAAATTTACCT 59.618 45.455 0.00 0.00 34.07 3.08
1008 1039 2.815158 TCCCCCTGCAAGAAATTTACC 58.185 47.619 0.00 0.00 34.07 2.85
1009 1040 3.132824 CCATCCCCCTGCAAGAAATTTAC 59.867 47.826 0.00 0.00 34.07 2.01
1010 1041 3.012274 TCCATCCCCCTGCAAGAAATTTA 59.988 43.478 0.00 0.00 34.07 1.40
1011 1042 2.190538 CCATCCCCCTGCAAGAAATTT 58.809 47.619 0.00 0.00 34.07 1.82
1012 1043 1.362237 TCCATCCCCCTGCAAGAAATT 59.638 47.619 0.00 0.00 34.07 1.82
1013 1044 1.009997 TCCATCCCCCTGCAAGAAAT 58.990 50.000 0.00 0.00 34.07 2.17
1014 1045 0.783206 TTCCATCCCCCTGCAAGAAA 59.217 50.000 0.00 0.00 34.07 2.52
1015 1046 0.783206 TTTCCATCCCCCTGCAAGAA 59.217 50.000 0.00 0.00 34.07 2.52
1016 1047 0.783206 TTTTCCATCCCCCTGCAAGA 59.217 50.000 0.00 0.00 34.07 3.02
1017 1048 1.643310 TTTTTCCATCCCCCTGCAAG 58.357 50.000 0.00 0.00 0.00 4.01
1018 1049 2.340721 ATTTTTCCATCCCCCTGCAA 57.659 45.000 0.00 0.00 0.00 4.08
1019 1050 2.584965 TCTATTTTTCCATCCCCCTGCA 59.415 45.455 0.00 0.00 0.00 4.41
1020 1051 3.312736 TCTATTTTTCCATCCCCCTGC 57.687 47.619 0.00 0.00 0.00 4.85
1021 1052 4.590222 CCAATCTATTTTTCCATCCCCCTG 59.410 45.833 0.00 0.00 0.00 4.45
1022 1053 4.235164 ACCAATCTATTTTTCCATCCCCCT 59.765 41.667 0.00 0.00 0.00 4.79
1023 1054 4.344968 CACCAATCTATTTTTCCATCCCCC 59.655 45.833 0.00 0.00 0.00 5.40
1024 1055 4.202253 GCACCAATCTATTTTTCCATCCCC 60.202 45.833 0.00 0.00 0.00 4.81
1025 1056 4.499696 CGCACCAATCTATTTTTCCATCCC 60.500 45.833 0.00 0.00 0.00 3.85
1026 1057 4.610945 CGCACCAATCTATTTTTCCATCC 58.389 43.478 0.00 0.00 0.00 3.51
1027 1058 4.044426 GCGCACCAATCTATTTTTCCATC 58.956 43.478 0.30 0.00 0.00 3.51
1028 1059 3.446873 TGCGCACCAATCTATTTTTCCAT 59.553 39.130 5.66 0.00 0.00 3.41
1029 1060 2.822561 TGCGCACCAATCTATTTTTCCA 59.177 40.909 5.66 0.00 0.00 3.53
1030 1061 3.128589 TCTGCGCACCAATCTATTTTTCC 59.871 43.478 5.66 0.00 0.00 3.13
1031 1062 4.098416 GTCTGCGCACCAATCTATTTTTC 58.902 43.478 5.66 0.00 0.00 2.29
1032 1063 3.426159 CGTCTGCGCACCAATCTATTTTT 60.426 43.478 5.66 0.00 0.00 1.94
1033 1064 2.095853 CGTCTGCGCACCAATCTATTTT 59.904 45.455 5.66 0.00 0.00 1.82
1034 1065 1.665679 CGTCTGCGCACCAATCTATTT 59.334 47.619 5.66 0.00 0.00 1.40
1035 1066 1.290203 CGTCTGCGCACCAATCTATT 58.710 50.000 5.66 0.00 0.00 1.73
1036 1067 0.175760 ACGTCTGCGCACCAATCTAT 59.824 50.000 5.66 0.00 42.83 1.98
1037 1068 0.457853 GACGTCTGCGCACCAATCTA 60.458 55.000 5.66 0.00 42.83 1.98
1038 1069 1.738099 GACGTCTGCGCACCAATCT 60.738 57.895 5.66 0.00 42.83 2.40
1039 1070 2.740714 GGACGTCTGCGCACCAATC 61.741 63.158 16.46 1.76 42.83 2.67
1040 1071 2.742372 GGACGTCTGCGCACCAAT 60.742 61.111 16.46 0.00 42.83 3.16
1041 1072 3.923864 AGGACGTCTGCGCACCAA 61.924 61.111 16.46 0.00 42.83 3.67
1042 1073 4.662961 CAGGACGTCTGCGCACCA 62.663 66.667 16.46 0.00 42.83 4.17
1048 1079 4.385405 AGCTGCCAGGACGTCTGC 62.385 66.667 16.46 15.71 42.05 4.26
1049 1080 2.433838 CAGCTGCCAGGACGTCTG 60.434 66.667 16.46 11.33 43.00 3.51
1050 1081 2.164865 CTTCAGCTGCCAGGACGTCT 62.165 60.000 16.46 0.00 0.00 4.18
1051 1082 1.739562 CTTCAGCTGCCAGGACGTC 60.740 63.158 9.47 7.13 0.00 4.34
1052 1083 2.345244 CTTCAGCTGCCAGGACGT 59.655 61.111 9.47 0.00 0.00 4.34
1053 1084 3.123620 GCTTCAGCTGCCAGGACG 61.124 66.667 9.47 0.00 38.21 4.79
1063 1094 0.319900 TGGAGTGTCGAAGCTTCAGC 60.320 55.000 25.47 16.94 42.49 4.26
1064 1095 2.154854 TTGGAGTGTCGAAGCTTCAG 57.845 50.000 25.47 17.50 0.00 3.02
1065 1096 2.839486 ATTGGAGTGTCGAAGCTTCA 57.161 45.000 25.47 10.50 0.00 3.02
1066 1097 3.557595 CCATATTGGAGTGTCGAAGCTTC 59.442 47.826 16.84 16.84 40.96 3.86
1067 1098 3.535561 CCATATTGGAGTGTCGAAGCTT 58.464 45.455 0.00 0.00 40.96 3.74
1068 1099 2.158900 CCCATATTGGAGTGTCGAAGCT 60.159 50.000 0.00 0.00 40.96 3.74
1069 1100 2.213499 CCCATATTGGAGTGTCGAAGC 58.787 52.381 0.00 0.00 40.96 3.86
1070 1101 3.543680 ACCCATATTGGAGTGTCGAAG 57.456 47.619 0.00 0.00 40.96 3.79
1071 1102 3.008594 ACAACCCATATTGGAGTGTCGAA 59.991 43.478 0.00 0.00 40.96 3.71
1072 1103 2.569853 ACAACCCATATTGGAGTGTCGA 59.430 45.455 0.00 0.00 40.96 4.20
1073 1104 2.936498 GACAACCCATATTGGAGTGTCG 59.064 50.000 14.25 0.00 40.96 4.35
1074 1105 3.279434 GGACAACCCATATTGGAGTGTC 58.721 50.000 18.15 18.15 43.95 3.67
1075 1106 3.366052 GGACAACCCATATTGGAGTGT 57.634 47.619 0.00 3.51 40.96 3.55
1088 1119 2.561478 TCTTTGTGCTAGGGACAACC 57.439 50.000 4.23 0.00 33.06 3.77
1089 1120 4.636206 CCTATTCTTTGTGCTAGGGACAAC 59.364 45.833 4.23 0.00 33.06 3.32
1090 1121 4.843728 CCTATTCTTTGTGCTAGGGACAA 58.156 43.478 0.73 0.73 0.00 3.18
1091 1122 4.487714 CCTATTCTTTGTGCTAGGGACA 57.512 45.455 0.00 0.00 0.00 4.02
1100 1131 2.095263 CGGTTGCACCCTATTCTTTGTG 60.095 50.000 0.00 0.00 33.75 3.33
1101 1132 2.159382 CGGTTGCACCCTATTCTTTGT 58.841 47.619 0.00 0.00 33.75 2.83
1102 1133 2.159382 ACGGTTGCACCCTATTCTTTG 58.841 47.619 0.00 0.00 33.75 2.77
1103 1134 2.039879 AGACGGTTGCACCCTATTCTTT 59.960 45.455 0.00 0.00 33.75 2.52
1104 1135 1.628846 AGACGGTTGCACCCTATTCTT 59.371 47.619 0.00 0.00 33.75 2.52
1105 1136 1.276622 AGACGGTTGCACCCTATTCT 58.723 50.000 0.00 0.00 33.75 2.40
1106 1137 2.167900 ACTAGACGGTTGCACCCTATTC 59.832 50.000 0.00 0.00 33.75 1.75
1107 1138 2.185387 ACTAGACGGTTGCACCCTATT 58.815 47.619 0.00 0.00 33.75 1.73
1108 1139 1.861982 ACTAGACGGTTGCACCCTAT 58.138 50.000 0.00 0.00 33.75 2.57
1109 1140 1.636148 AACTAGACGGTTGCACCCTA 58.364 50.000 0.00 0.00 33.75 3.53
1110 1141 1.636148 TAACTAGACGGTTGCACCCT 58.364 50.000 0.00 0.00 33.75 4.34
1111 1142 2.093869 TGATAACTAGACGGTTGCACCC 60.094 50.000 0.00 0.00 33.75 4.61
1112 1143 3.241067 TGATAACTAGACGGTTGCACC 57.759 47.619 0.00 0.00 34.05 5.01
1113 1144 5.581085 AGAATTGATAACTAGACGGTTGCAC 59.419 40.000 0.00 0.00 0.00 4.57
1114 1145 5.730550 AGAATTGATAACTAGACGGTTGCA 58.269 37.500 0.00 0.00 0.00 4.08
1115 1146 6.663944 AAGAATTGATAACTAGACGGTTGC 57.336 37.500 0.00 0.00 0.00 4.17
1116 1147 8.697846 TGTAAGAATTGATAACTAGACGGTTG 57.302 34.615 0.00 0.00 0.00 3.77
1117 1148 9.886132 ATTGTAAGAATTGATAACTAGACGGTT 57.114 29.630 0.00 0.00 0.00 4.44
1118 1149 9.530633 GATTGTAAGAATTGATAACTAGACGGT 57.469 33.333 0.00 0.00 0.00 4.83
1119 1150 9.751542 AGATTGTAAGAATTGATAACTAGACGG 57.248 33.333 0.00 0.00 0.00 4.79
1129 1160 9.995003 GATGACCTCTAGATTGTAAGAATTGAT 57.005 33.333 0.00 0.00 0.00 2.57
1130 1161 8.138074 CGATGACCTCTAGATTGTAAGAATTGA 58.862 37.037 0.00 0.00 0.00 2.57
1131 1162 8.138074 TCGATGACCTCTAGATTGTAAGAATTG 58.862 37.037 0.00 0.00 0.00 2.32
1132 1163 8.239038 TCGATGACCTCTAGATTGTAAGAATT 57.761 34.615 0.00 0.00 0.00 2.17
1133 1164 7.721842 TCTCGATGACCTCTAGATTGTAAGAAT 59.278 37.037 0.00 0.00 0.00 2.40
1134 1165 7.012515 GTCTCGATGACCTCTAGATTGTAAGAA 59.987 40.741 0.00 0.00 39.69 2.52
1135 1166 6.483974 GTCTCGATGACCTCTAGATTGTAAGA 59.516 42.308 0.00 0.00 39.69 2.10
1136 1167 6.261158 TGTCTCGATGACCTCTAGATTGTAAG 59.739 42.308 11.01 0.00 44.75 2.34
1137 1168 6.120220 TGTCTCGATGACCTCTAGATTGTAA 58.880 40.000 11.01 0.00 44.75 2.41
1138 1169 5.681639 TGTCTCGATGACCTCTAGATTGTA 58.318 41.667 11.01 0.00 44.75 2.41
1139 1170 4.527944 TGTCTCGATGACCTCTAGATTGT 58.472 43.478 11.01 0.00 44.75 2.71
1140 1171 5.506686 TTGTCTCGATGACCTCTAGATTG 57.493 43.478 11.01 0.00 44.75 2.67
1141 1172 5.830457 TCATTGTCTCGATGACCTCTAGATT 59.170 40.000 11.01 0.00 44.75 2.40
1142 1173 5.380900 TCATTGTCTCGATGACCTCTAGAT 58.619 41.667 11.01 0.00 44.75 1.98
1143 1174 4.781934 TCATTGTCTCGATGACCTCTAGA 58.218 43.478 11.01 0.00 44.75 2.43
1144 1175 5.163612 TGTTCATTGTCTCGATGACCTCTAG 60.164 44.000 11.01 0.00 44.75 2.43
1145 1176 4.705023 TGTTCATTGTCTCGATGACCTCTA 59.295 41.667 11.01 0.00 44.75 2.43
1146 1177 3.511540 TGTTCATTGTCTCGATGACCTCT 59.488 43.478 11.01 0.00 44.75 3.69
1147 1178 3.849911 TGTTCATTGTCTCGATGACCTC 58.150 45.455 11.01 0.00 44.75 3.85
1148 1179 3.961480 TGTTCATTGTCTCGATGACCT 57.039 42.857 11.01 0.00 44.75 3.85
1149 1180 4.201851 CCATTGTTCATTGTCTCGATGACC 60.202 45.833 11.01 0.00 44.75 4.02
1150 1181 4.631377 TCCATTGTTCATTGTCTCGATGAC 59.369 41.667 7.74 7.74 45.54 3.06
1151 1182 4.831107 TCCATTGTTCATTGTCTCGATGA 58.169 39.130 0.00 0.00 32.98 2.92
1152 1183 4.034858 CCTCCATTGTTCATTGTCTCGATG 59.965 45.833 0.00 0.00 0.00 3.84
1153 1184 4.080919 TCCTCCATTGTTCATTGTCTCGAT 60.081 41.667 0.00 0.00 0.00 3.59
1154 1185 3.260632 TCCTCCATTGTTCATTGTCTCGA 59.739 43.478 0.00 0.00 0.00 4.04
1155 1186 3.599343 TCCTCCATTGTTCATTGTCTCG 58.401 45.455 0.00 0.00 0.00 4.04
1156 1187 3.944015 CCTCCTCCATTGTTCATTGTCTC 59.056 47.826 0.00 0.00 0.00 3.36
1157 1188 3.331889 ACCTCCTCCATTGTTCATTGTCT 59.668 43.478 0.00 0.00 0.00 3.41
1158 1189 3.690460 ACCTCCTCCATTGTTCATTGTC 58.310 45.455 0.00 0.00 0.00 3.18
1159 1190 3.074390 TGACCTCCTCCATTGTTCATTGT 59.926 43.478 0.00 0.00 0.00 2.71
1160 1191 3.689347 TGACCTCCTCCATTGTTCATTG 58.311 45.455 0.00 0.00 0.00 2.82
1161 1192 4.275810 CATGACCTCCTCCATTGTTCATT 58.724 43.478 0.00 0.00 0.00 2.57
1162 1193 3.894759 CATGACCTCCTCCATTGTTCAT 58.105 45.455 0.00 0.00 0.00 2.57
1163 1194 2.618816 GCATGACCTCCTCCATTGTTCA 60.619 50.000 0.00 0.00 0.00 3.18
1164 1195 2.019984 GCATGACCTCCTCCATTGTTC 58.980 52.381 0.00 0.00 0.00 3.18
1165 1196 1.679944 CGCATGACCTCCTCCATTGTT 60.680 52.381 0.00 0.00 0.00 2.83
1166 1197 0.107508 CGCATGACCTCCTCCATTGT 60.108 55.000 0.00 0.00 0.00 2.71
1167 1198 0.178767 TCGCATGACCTCCTCCATTG 59.821 55.000 0.00 0.00 0.00 2.82
1168 1199 0.467384 CTCGCATGACCTCCTCCATT 59.533 55.000 0.00 0.00 0.00 3.16
1169 1200 0.689080 ACTCGCATGACCTCCTCCAT 60.689 55.000 0.00 0.00 0.00 3.41
1170 1201 1.305297 ACTCGCATGACCTCCTCCA 60.305 57.895 0.00 0.00 0.00 3.86
1171 1202 1.142748 CACTCGCATGACCTCCTCC 59.857 63.158 0.00 0.00 0.00 4.30
1172 1203 1.520342 GCACTCGCATGACCTCCTC 60.520 63.158 0.00 0.00 38.36 3.71
1173 1204 2.285773 TGCACTCGCATGACCTCCT 61.286 57.895 0.00 0.00 45.36 3.69
1174 1205 2.265739 TGCACTCGCATGACCTCC 59.734 61.111 0.00 0.00 45.36 4.30
1186 1217 4.704833 AATCACCGCCGCTGCACT 62.705 61.111 0.00 0.00 37.32 4.40
1187 1218 2.747507 AAAAATCACCGCCGCTGCAC 62.748 55.000 0.00 0.00 37.32 4.57
1188 1219 2.560119 AAAAATCACCGCCGCTGCA 61.560 52.632 0.00 0.00 37.32 4.41
1189 1220 2.088178 CAAAAATCACCGCCGCTGC 61.088 57.895 0.00 0.00 0.00 5.25
1190 1221 0.171007 ATCAAAAATCACCGCCGCTG 59.829 50.000 0.00 0.00 0.00 5.18
1191 1222 0.171007 CATCAAAAATCACCGCCGCT 59.829 50.000 0.00 0.00 0.00 5.52
1192 1223 0.170116 TCATCAAAAATCACCGCCGC 59.830 50.000 0.00 0.00 0.00 6.53
1193 1224 2.849880 ATCATCAAAAATCACCGCCG 57.150 45.000 0.00 0.00 0.00 6.46
1194 1225 3.848726 ACAATCATCAAAAATCACCGCC 58.151 40.909 0.00 0.00 0.00 6.13
1195 1226 6.751425 TGATAACAATCATCAAAAATCACCGC 59.249 34.615 0.00 0.00 29.55 5.68
1196 1227 8.861033 ATGATAACAATCATCAAAAATCACCG 57.139 30.769 0.00 0.00 36.63 4.94
1208 1239 9.570468 AATCACAAGCTAGATGATAACAATCAT 57.430 29.630 7.49 0.59 43.40 2.45
1209 1240 8.969260 AATCACAAGCTAGATGATAACAATCA 57.031 30.769 7.49 0.00 32.74 2.57
1212 1243 8.677300 GGAAAATCACAAGCTAGATGATAACAA 58.323 33.333 7.49 0.00 32.74 2.83
1213 1244 8.049117 AGGAAAATCACAAGCTAGATGATAACA 58.951 33.333 7.49 0.00 32.74 2.41
1214 1245 8.443953 AGGAAAATCACAAGCTAGATGATAAC 57.556 34.615 7.49 3.80 32.74 1.89
1217 1248 9.638176 AAATAGGAAAATCACAAGCTAGATGAT 57.362 29.630 0.00 0.00 34.52 2.45
1218 1249 9.466497 AAAATAGGAAAATCACAAGCTAGATGA 57.534 29.630 0.00 0.00 0.00 2.92
1223 1254 9.528489 ACCTAAAAATAGGAAAATCACAAGCTA 57.472 29.630 8.83 0.00 39.60 3.32
1224 1255 8.422577 ACCTAAAAATAGGAAAATCACAAGCT 57.577 30.769 8.83 0.00 39.60 3.74
1225 1256 9.489084 AAACCTAAAAATAGGAAAATCACAAGC 57.511 29.630 8.83 0.00 39.60 4.01
1245 1276 9.162764 GCTTCTCTATTACAATGTTCAAACCTA 57.837 33.333 0.00 0.00 0.00 3.08
1246 1277 7.665559 TGCTTCTCTATTACAATGTTCAAACCT 59.334 33.333 0.00 0.00 0.00 3.50
1247 1278 7.816640 TGCTTCTCTATTACAATGTTCAAACC 58.183 34.615 0.00 0.00 0.00 3.27
1258 1289 9.535170 AGCTACCTTATATGCTTCTCTATTACA 57.465 33.333 0.00 0.00 30.96 2.41
1260 1291 9.755122 TGAGCTACCTTATATGCTTCTCTATTA 57.245 33.333 0.00 0.00 35.76 0.98
1261 1292 8.527810 GTGAGCTACCTTATATGCTTCTCTATT 58.472 37.037 0.00 0.00 35.76 1.73
1262 1293 7.148154 CGTGAGCTACCTTATATGCTTCTCTAT 60.148 40.741 0.00 0.00 35.76 1.98
1263 1294 6.149640 CGTGAGCTACCTTATATGCTTCTCTA 59.850 42.308 0.00 0.00 35.76 2.43
1264 1295 5.048364 CGTGAGCTACCTTATATGCTTCTCT 60.048 44.000 0.00 0.00 35.76 3.10
1265 1296 5.048643 TCGTGAGCTACCTTATATGCTTCTC 60.049 44.000 0.00 0.00 35.76 2.87
1266 1297 4.827835 TCGTGAGCTACCTTATATGCTTCT 59.172 41.667 0.00 0.00 35.76 2.85
1267 1298 5.122512 TCGTGAGCTACCTTATATGCTTC 57.877 43.478 0.00 0.00 35.76 3.86
1268 1299 5.069251 AGTTCGTGAGCTACCTTATATGCTT 59.931 40.000 0.00 0.00 35.76 3.91
1269 1300 4.585162 AGTTCGTGAGCTACCTTATATGCT 59.415 41.667 0.00 0.00 38.59 3.79
1270 1301 4.872664 AGTTCGTGAGCTACCTTATATGC 58.127 43.478 0.00 0.00 0.00 3.14
1271 1302 6.087522 GCTAGTTCGTGAGCTACCTTATATG 58.912 44.000 0.00 0.00 35.73 1.78
1272 1303 6.256912 GCTAGTTCGTGAGCTACCTTATAT 57.743 41.667 0.00 0.00 35.73 0.86
1273 1304 5.686159 GCTAGTTCGTGAGCTACCTTATA 57.314 43.478 0.00 0.00 35.73 0.98
1274 1305 4.571372 GCTAGTTCGTGAGCTACCTTAT 57.429 45.455 0.00 0.00 35.73 1.73
1276 1307 2.943449 GCTAGTTCGTGAGCTACCTT 57.057 50.000 0.00 0.00 35.73 3.50
1282 1313 2.943449 AACCTAGCTAGTTCGTGAGC 57.057 50.000 19.31 0.00 39.08 4.26
1283 1314 4.634883 TCACTAACCTAGCTAGTTCGTGAG 59.365 45.833 23.69 17.98 41.93 3.51
1284 1315 4.582869 TCACTAACCTAGCTAGTTCGTGA 58.417 43.478 23.69 23.69 43.50 4.35
1285 1316 4.634883 TCTCACTAACCTAGCTAGTTCGTG 59.365 45.833 19.31 20.68 40.42 4.35
1286 1317 4.841422 TCTCACTAACCTAGCTAGTTCGT 58.159 43.478 19.31 12.12 0.00 3.85
1287 1318 6.380095 AATCTCACTAACCTAGCTAGTTCG 57.620 41.667 19.31 11.57 0.00 3.95
1288 1319 8.471609 AGAAAATCTCACTAACCTAGCTAGTTC 58.528 37.037 19.31 10.95 0.00 3.01
1289 1320 8.254508 CAGAAAATCTCACTAACCTAGCTAGTT 58.745 37.037 19.31 14.85 0.00 2.24
1290 1321 7.631811 GCAGAAAATCTCACTAACCTAGCTAGT 60.632 40.741 19.31 4.58 0.00 2.57
1291 1322 6.699642 GCAGAAAATCTCACTAACCTAGCTAG 59.300 42.308 14.20 14.20 0.00 3.42
1292 1323 6.574350 GCAGAAAATCTCACTAACCTAGCTA 58.426 40.000 0.00 0.00 0.00 3.32
1293 1324 5.423886 GCAGAAAATCTCACTAACCTAGCT 58.576 41.667 0.00 0.00 0.00 3.32
1294 1325 4.268884 CGCAGAAAATCTCACTAACCTAGC 59.731 45.833 0.00 0.00 0.00 3.42
1295 1326 5.517054 GTCGCAGAAAATCTCACTAACCTAG 59.483 44.000 0.00 0.00 39.69 3.02
1296 1327 5.185249 AGTCGCAGAAAATCTCACTAACCTA 59.815 40.000 0.00 0.00 39.69 3.08
1297 1328 4.021016 AGTCGCAGAAAATCTCACTAACCT 60.021 41.667 0.00 0.00 39.69 3.50
1298 1329 4.246458 AGTCGCAGAAAATCTCACTAACC 58.754 43.478 0.00 0.00 39.69 2.85
1299 1330 5.847670 AAGTCGCAGAAAATCTCACTAAC 57.152 39.130 0.00 0.00 39.69 2.34
1300 1331 7.320399 TCATAAGTCGCAGAAAATCTCACTAA 58.680 34.615 0.00 0.00 39.69 2.24
1301 1332 6.863275 TCATAAGTCGCAGAAAATCTCACTA 58.137 36.000 0.00 0.00 39.69 2.74
1302 1333 5.724328 TCATAAGTCGCAGAAAATCTCACT 58.276 37.500 0.00 0.00 39.69 3.41
1303 1334 6.595772 ATCATAAGTCGCAGAAAATCTCAC 57.404 37.500 0.00 0.00 39.69 3.51
1304 1335 6.037500 CCAATCATAAGTCGCAGAAAATCTCA 59.962 38.462 0.00 0.00 39.69 3.27
1305 1336 6.037610 ACCAATCATAAGTCGCAGAAAATCTC 59.962 38.462 0.00 0.00 39.69 2.75
1306 1337 5.882557 ACCAATCATAAGTCGCAGAAAATCT 59.117 36.000 0.00 0.00 39.69 2.40
1307 1338 6.124088 ACCAATCATAAGTCGCAGAAAATC 57.876 37.500 0.00 0.00 39.69 2.17
1308 1339 6.515272 AACCAATCATAAGTCGCAGAAAAT 57.485 33.333 0.00 0.00 39.69 1.82
1309 1340 5.957842 AACCAATCATAAGTCGCAGAAAA 57.042 34.783 0.00 0.00 39.69 2.29
1310 1341 5.471797 TCAAACCAATCATAAGTCGCAGAAA 59.528 36.000 0.00 0.00 39.69 2.52
1311 1342 5.000591 TCAAACCAATCATAAGTCGCAGAA 58.999 37.500 0.00 0.00 39.69 3.02
1312 1343 4.574892 TCAAACCAATCATAAGTCGCAGA 58.425 39.130 0.00 0.00 0.00 4.26
1313 1344 4.201851 CCTCAAACCAATCATAAGTCGCAG 60.202 45.833 0.00 0.00 0.00 5.18
1314 1345 3.689161 CCTCAAACCAATCATAAGTCGCA 59.311 43.478 0.00 0.00 0.00 5.10
1315 1346 3.938963 TCCTCAAACCAATCATAAGTCGC 59.061 43.478 0.00 0.00 0.00 5.19
1316 1347 5.869350 GTTCCTCAAACCAATCATAAGTCG 58.131 41.667 0.00 0.00 31.20 4.18
1329 1360 2.882137 TCCATTCAACGGTTCCTCAAAC 59.118 45.455 0.00 0.00 37.12 2.93
1330 1361 3.216187 TCCATTCAACGGTTCCTCAAA 57.784 42.857 0.00 0.00 0.00 2.69
1331 1362 2.940994 TCCATTCAACGGTTCCTCAA 57.059 45.000 0.00 0.00 0.00 3.02
1332 1363 2.940994 TTCCATTCAACGGTTCCTCA 57.059 45.000 0.00 0.00 0.00 3.86
1333 1364 3.506067 ACAATTCCATTCAACGGTTCCTC 59.494 43.478 0.00 0.00 0.00 3.71
1334 1365 3.496331 ACAATTCCATTCAACGGTTCCT 58.504 40.909 0.00 0.00 0.00 3.36
1335 1366 3.934457 ACAATTCCATTCAACGGTTCC 57.066 42.857 0.00 0.00 0.00 3.62
1336 1367 9.233232 GATATTTACAATTCCATTCAACGGTTC 57.767 33.333 0.00 0.00 0.00 3.62
1337 1368 8.194769 GGATATTTACAATTCCATTCAACGGTT 58.805 33.333 0.00 0.00 0.00 4.44
1338 1369 7.559897 AGGATATTTACAATTCCATTCAACGGT 59.440 33.333 0.00 0.00 0.00 4.83
1339 1370 7.940850 AGGATATTTACAATTCCATTCAACGG 58.059 34.615 0.00 0.00 0.00 4.44
1340 1371 8.620416 TGAGGATATTTACAATTCCATTCAACG 58.380 33.333 0.00 0.00 0.00 4.10
1341 1372 9.736023 GTGAGGATATTTACAATTCCATTCAAC 57.264 33.333 0.00 0.00 0.00 3.18
1342 1373 9.473007 TGTGAGGATATTTACAATTCCATTCAA 57.527 29.630 0.00 0.00 0.00 2.69
1343 1374 9.123902 CTGTGAGGATATTTACAATTCCATTCA 57.876 33.333 0.00 0.00 0.00 2.57
1344 1375 9.342308 TCTGTGAGGATATTTACAATTCCATTC 57.658 33.333 0.00 0.00 0.00 2.67
1345 1376 9.125026 GTCTGTGAGGATATTTACAATTCCATT 57.875 33.333 0.00 0.00 0.00 3.16
1346 1377 7.442364 CGTCTGTGAGGATATTTACAATTCCAT 59.558 37.037 0.00 0.00 0.00 3.41
1347 1378 6.761242 CGTCTGTGAGGATATTTACAATTCCA 59.239 38.462 0.00 0.00 0.00 3.53
1348 1379 6.984474 TCGTCTGTGAGGATATTTACAATTCC 59.016 38.462 0.00 0.00 0.00 3.01
1349 1380 8.491152 CATCGTCTGTGAGGATATTTACAATTC 58.509 37.037 3.01 0.00 35.39 2.17
1350 1381 7.987458 ACATCGTCTGTGAGGATATTTACAATT 59.013 33.333 3.01 0.00 35.39 2.32
1351 1382 7.500992 ACATCGTCTGTGAGGATATTTACAAT 58.499 34.615 3.01 0.00 35.39 2.71
1352 1383 6.873997 ACATCGTCTGTGAGGATATTTACAA 58.126 36.000 3.01 0.00 35.39 2.41
1353 1384 6.465439 ACATCGTCTGTGAGGATATTTACA 57.535 37.500 3.01 0.00 35.39 2.41
1354 1385 8.516234 AGATACATCGTCTGTGAGGATATTTAC 58.484 37.037 3.01 0.00 38.92 2.01
1355 1386 8.637196 AGATACATCGTCTGTGAGGATATTTA 57.363 34.615 3.01 0.00 38.92 1.40
1356 1387 7.531857 AGATACATCGTCTGTGAGGATATTT 57.468 36.000 3.01 0.00 38.92 1.40
1357 1388 8.815565 ATAGATACATCGTCTGTGAGGATATT 57.184 34.615 3.01 0.00 38.92 1.28
1358 1389 8.815565 AATAGATACATCGTCTGTGAGGATAT 57.184 34.615 3.01 0.00 38.92 1.63
1359 1390 8.637196 AAATAGATACATCGTCTGTGAGGATA 57.363 34.615 3.01 0.00 38.92 2.59
1360 1391 7.531857 AAATAGATACATCGTCTGTGAGGAT 57.468 36.000 4.07 0.00 38.92 3.24
1361 1392 6.961360 AAATAGATACATCGTCTGTGAGGA 57.039 37.500 4.07 0.00 38.92 3.71
1362 1393 9.347934 GATAAAATAGATACATCGTCTGTGAGG 57.652 37.037 4.07 0.00 38.92 3.86
1451 1482 6.069440 TGGTGGACAAATCAATTATCTCTCCT 60.069 38.462 0.00 0.00 0.00 3.69
1525 1557 0.536233 CACGGGACAAACATGACCCA 60.536 55.000 14.92 0.00 42.57 4.51
1574 1606 2.676121 CTGGATGGTTGCCGCCAA 60.676 61.111 0.30 0.00 42.48 4.52
1627 1661 2.829384 GGAGGCAGACACAACCCCA 61.829 63.158 0.00 0.00 0.00 4.96
1710 1745 7.133133 ACAATTAGTAATCCATCCGGTTACT 57.867 36.000 16.08 16.08 39.89 2.24
1908 1944 0.611062 CTCCCCTACTGTGTCGTCCA 60.611 60.000 0.00 0.00 0.00 4.02
1916 1952 2.509931 TAGCCGCACTCCCCTACTGT 62.510 60.000 0.00 0.00 0.00 3.55
1985 2021 2.597578 TCATATAGTAGCCCCTGCGA 57.402 50.000 0.00 0.00 44.33 5.10
2043 2079 0.321210 TGTGTTGGCCCATACACGAG 60.321 55.000 20.99 0.00 45.84 4.18
2135 2172 2.233922 TCGGGTCTTTGAGGTCAAGATC 59.766 50.000 0.00 0.00 37.15 2.75
2160 2197 3.127203 GTCTTCGAGTAGCTAGAAGCACA 59.873 47.826 13.72 0.00 45.56 4.57
2166 2203 3.242549 TCGTGTCTTCGAGTAGCTAGA 57.757 47.619 0.00 0.00 34.85 2.43
2206 2243 9.823647 TGGAGTATGATCTTAAATCTTTGAGTC 57.176 33.333 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.