Multiple sequence alignment - TraesCS7A01G381800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G381800 chr7A 100.000 3940 0 0 1 3940 556482132 556478193 0.000000e+00 7276.0
1 TraesCS7A01G381800 chr7A 85.882 1792 202 28 1130 2907 556357410 556355656 0.000000e+00 1860.0
2 TraesCS7A01G381800 chr7A 88.269 1057 121 1 1652 2708 556325598 556326651 0.000000e+00 1262.0
3 TraesCS7A01G381800 chr7A 84.225 355 43 5 1130 1477 556325101 556325449 2.270000e-87 333.0
4 TraesCS7A01G381800 chr7A 93.023 43 2 1 320 362 556324587 556324628 1.180000e-05 62.1
5 TraesCS7A01G381800 chr7B 94.804 1867 89 5 1130 2992 518340057 518338195 0.000000e+00 2904.0
6 TraesCS7A01G381800 chr7B 84.797 1822 225 24 1130 2928 517922246 517920454 0.000000e+00 1783.0
7 TraesCS7A01G381800 chr7B 86.217 1422 168 13 1134 2537 517851140 517852551 0.000000e+00 1515.0
8 TraesCS7A01G381800 chr7B 88.439 1185 115 6 1155 2338 518333752 518332589 0.000000e+00 1410.0
9 TraesCS7A01G381800 chr7B 87.864 412 44 4 2532 2938 609299629 609299219 2.750000e-131 479.0
10 TraesCS7A01G381800 chr7B 85.390 397 53 3 2533 2925 517857967 517858362 1.320000e-109 407.0
11 TraesCS7A01G381800 chr7B 83.217 286 33 7 760 1043 518340459 518340187 8.450000e-62 248.0
12 TraesCS7A01G381800 chr7B 84.914 232 28 2 1291 1518 609205127 609204899 1.100000e-55 228.0
13 TraesCS7A01G381800 chr7B 91.150 113 10 0 2620 2732 609203438 609203326 1.900000e-33 154.0
14 TraesCS7A01G381800 chr7B 80.117 171 22 5 2770 2938 609203326 609203166 2.490000e-22 117.0
15 TraesCS7A01G381800 chr7B 100.000 30 0 0 2334 2363 518331030 518331001 5.500000e-04 56.5
16 TraesCS7A01G381800 chr7D 94.001 1817 99 5 1130 2945 489675185 489673378 0.000000e+00 2743.0
17 TraesCS7A01G381800 chr7D 87.106 1365 166 4 1566 2928 489160217 489158861 0.000000e+00 1537.0
18 TraesCS7A01G381800 chr7D 75.901 805 124 48 802 1569 489161017 489160246 8.100000e-92 348.0
19 TraesCS7A01G381800 chr7D 91.457 199 16 1 560 758 489675790 489675593 5.020000e-69 272.0
20 TraesCS7A01G381800 chr1A 94.605 797 41 2 3145 3940 495336104 495336899 0.000000e+00 1232.0
21 TraesCS7A01G381800 chr1A 93.045 762 46 3 3185 3940 221699989 221700749 0.000000e+00 1107.0
22 TraesCS7A01G381800 chr1A 94.118 34 2 0 55 88 584488510 584488543 7.000000e-03 52.8
23 TraesCS7A01G381800 chr2D 91.743 763 57 2 3184 3940 635194452 635193690 0.000000e+00 1055.0
24 TraesCS7A01G381800 chr2D 91.743 763 57 2 3184 3940 635196693 635195931 0.000000e+00 1055.0
25 TraesCS7A01G381800 chr2D 91.612 763 58 2 3184 3940 635198934 635198172 0.000000e+00 1050.0
26 TraesCS7A01G381800 chr2D 91.612 763 58 2 3184 3940 635201174 635200412 0.000000e+00 1050.0
27 TraesCS7A01G381800 chr2D 100.000 28 0 0 63 90 602738922 602738895 7.000000e-03 52.8
28 TraesCS7A01G381800 chr2A 91.287 769 61 2 3178 3940 378579727 378580495 0.000000e+00 1044.0
29 TraesCS7A01G381800 chr6D 91.350 763 60 3 3184 3940 402561994 402561232 0.000000e+00 1038.0
30 TraesCS7A01G381800 chr1B 90.025 802 65 8 3148 3940 388777850 388777055 0.000000e+00 1024.0
31 TraesCS7A01G381800 chr1B 100.000 28 0 0 62 89 302512177 302512150 7.000000e-03 52.8
32 TraesCS7A01G381800 chr5B 87.821 312 29 7 3198 3502 548247554 548247863 1.350000e-94 357.0
33 TraesCS7A01G381800 chr3B 87.037 324 33 5 3189 3505 799140763 799140442 1.350000e-94 357.0
34 TraesCS7A01G381800 chr4B 80.263 380 36 18 3148 3501 578055688 578055322 2.350000e-62 250.0
35 TraesCS7A01G381800 chr4B 100.000 28 0 0 61 88 298270110 298270137 7.000000e-03 52.8
36 TraesCS7A01G381800 chr6B 77.561 410 82 6 1733 2140 680797188 680796787 5.090000e-59 239.0
37 TraesCS7A01G381800 chr6B 74.771 436 90 14 1139 1560 680797766 680797337 1.130000e-40 178.0
38 TraesCS7A01G381800 chr6A 98.780 82 1 0 319 400 93770037 93769956 3.170000e-31 147.0
39 TraesCS7A01G381800 chr3A 97.143 35 0 1 54 88 697283701 697283668 1.530000e-04 58.4
40 TraesCS7A01G381800 chr2B 97.059 34 1 0 55 88 359306212 359306179 1.530000e-04 58.4
41 TraesCS7A01G381800 chrUn 100.000 29 0 0 60 88 42479237 42479265 2.000000e-03 54.7
42 TraesCS7A01G381800 chr1D 100.000 28 0 0 62 89 212719245 212719272 7.000000e-03 52.8
43 TraesCS7A01G381800 chr1D 100.000 28 0 0 61 88 452622793 452622820 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G381800 chr7A 556478193 556482132 3939 True 7276.000000 7276 100.000000 1 3940 1 chr7A.!!$R2 3939
1 TraesCS7A01G381800 chr7A 556355656 556357410 1754 True 1860.000000 1860 85.882000 1130 2907 1 chr7A.!!$R1 1777
2 TraesCS7A01G381800 chr7A 556324587 556326651 2064 False 552.366667 1262 88.505667 320 2708 3 chr7A.!!$F1 2388
3 TraesCS7A01G381800 chr7B 517920454 517922246 1792 True 1783.000000 1783 84.797000 1130 2928 1 chr7B.!!$R1 1798
4 TraesCS7A01G381800 chr7B 518338195 518340459 2264 True 1576.000000 2904 89.010500 760 2992 2 chr7B.!!$R4 2232
5 TraesCS7A01G381800 chr7B 517851140 517852551 1411 False 1515.000000 1515 86.217000 1134 2537 1 chr7B.!!$F1 1403
6 TraesCS7A01G381800 chr7B 518331001 518333752 2751 True 733.250000 1410 94.219500 1155 2363 2 chr7B.!!$R3 1208
7 TraesCS7A01G381800 chr7D 489673378 489675790 2412 True 1507.500000 2743 92.729000 560 2945 2 chr7D.!!$R2 2385
8 TraesCS7A01G381800 chr7D 489158861 489161017 2156 True 942.500000 1537 81.503500 802 2928 2 chr7D.!!$R1 2126
9 TraesCS7A01G381800 chr1A 495336104 495336899 795 False 1232.000000 1232 94.605000 3145 3940 1 chr1A.!!$F2 795
10 TraesCS7A01G381800 chr1A 221699989 221700749 760 False 1107.000000 1107 93.045000 3185 3940 1 chr1A.!!$F1 755
11 TraesCS7A01G381800 chr2D 635193690 635201174 7484 True 1052.500000 1055 91.677500 3184 3940 4 chr2D.!!$R2 756
12 TraesCS7A01G381800 chr2A 378579727 378580495 768 False 1044.000000 1044 91.287000 3178 3940 1 chr2A.!!$F1 762
13 TraesCS7A01G381800 chr6D 402561232 402561994 762 True 1038.000000 1038 91.350000 3184 3940 1 chr6D.!!$R1 756
14 TraesCS7A01G381800 chr1B 388777055 388777850 795 True 1024.000000 1024 90.025000 3148 3940 1 chr1B.!!$R2 792
15 TraesCS7A01G381800 chr6B 680796787 680797766 979 True 208.500000 239 76.166000 1139 2140 2 chr6B.!!$R1 1001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.038343 AATGCAGCGCGGAAACATTT 60.038 45.0 13.03 0.0 0.00 2.32 F
1069 1164 0.035317 TGCACAGACACAGGTGATCC 59.965 55.0 6.40 0.0 37.18 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2161 0.464373 CCTGCACCCATACGAGCAAT 60.464 55.0 0.0 0.0 36.44 3.56 R
3013 4827 0.093026 CGTCGCCAAGAAGCTAAACG 59.907 55.0 0.0 0.0 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.780616 ATATATTATGAGAGGATGGAGTCTGG 57.219 38.462 0.00 0.00 0.00 3.86
47 48 2.100128 ATGAGAGGATGGAGTCTGGG 57.900 55.000 0.00 0.00 0.00 4.45
48 49 1.010795 TGAGAGGATGGAGTCTGGGA 58.989 55.000 0.00 0.00 0.00 4.37
49 50 1.577729 TGAGAGGATGGAGTCTGGGAT 59.422 52.381 0.00 0.00 0.00 3.85
50 51 2.022625 TGAGAGGATGGAGTCTGGGATT 60.023 50.000 0.00 0.00 0.00 3.01
51 52 2.632512 GAGAGGATGGAGTCTGGGATTC 59.367 54.545 0.00 0.00 0.00 2.52
52 53 2.249743 AGAGGATGGAGTCTGGGATTCT 59.750 50.000 0.00 0.00 0.00 2.40
53 54 3.044894 GAGGATGGAGTCTGGGATTCTT 58.955 50.000 0.00 0.00 0.00 2.52
54 55 3.457749 GAGGATGGAGTCTGGGATTCTTT 59.542 47.826 0.00 0.00 0.00 2.52
55 56 4.635473 AGGATGGAGTCTGGGATTCTTTA 58.365 43.478 0.00 0.00 0.00 1.85
56 57 4.410555 AGGATGGAGTCTGGGATTCTTTAC 59.589 45.833 0.00 0.00 0.00 2.01
57 58 4.164221 GGATGGAGTCTGGGATTCTTTACA 59.836 45.833 0.00 0.00 0.00 2.41
58 59 4.826274 TGGAGTCTGGGATTCTTTACAG 57.174 45.455 0.00 0.00 0.00 2.74
59 60 4.425772 TGGAGTCTGGGATTCTTTACAGA 58.574 43.478 0.00 0.00 37.61 3.41
60 61 4.844085 TGGAGTCTGGGATTCTTTACAGAA 59.156 41.667 0.00 0.00 43.45 3.02
72 73 5.593679 TCTTTACAGAATTACTCCCTCCG 57.406 43.478 0.00 0.00 0.00 4.63
73 74 5.021458 TCTTTACAGAATTACTCCCTCCGT 58.979 41.667 0.00 0.00 0.00 4.69
75 76 2.108970 ACAGAATTACTCCCTCCGTCC 58.891 52.381 0.00 0.00 0.00 4.79
76 77 2.292323 ACAGAATTACTCCCTCCGTCCT 60.292 50.000 0.00 0.00 0.00 3.85
77 78 3.053095 ACAGAATTACTCCCTCCGTCCTA 60.053 47.826 0.00 0.00 0.00 2.94
78 79 4.153411 CAGAATTACTCCCTCCGTCCTAT 58.847 47.826 0.00 0.00 0.00 2.57
79 80 5.163012 ACAGAATTACTCCCTCCGTCCTATA 60.163 44.000 0.00 0.00 0.00 1.31
80 81 5.773680 CAGAATTACTCCCTCCGTCCTATAA 59.226 44.000 0.00 0.00 0.00 0.98
82 83 7.614583 CAGAATTACTCCCTCCGTCCTATAATA 59.385 40.741 0.00 0.00 0.00 0.98
83 84 8.345306 AGAATTACTCCCTCCGTCCTATAATAT 58.655 37.037 0.00 0.00 0.00 1.28
84 85 9.638176 GAATTACTCCCTCCGTCCTATAATATA 57.362 37.037 0.00 0.00 0.00 0.86
86 87 9.643735 ATTACTCCCTCCGTCCTATAATATAAG 57.356 37.037 0.00 0.00 0.00 1.73
87 88 7.281366 ACTCCCTCCGTCCTATAATATAAGA 57.719 40.000 0.00 0.00 0.00 2.10
88 89 7.884891 ACTCCCTCCGTCCTATAATATAAGAT 58.115 38.462 0.00 0.00 0.00 2.40
92 93 8.634444 CCCTCCGTCCTATAATATAAGATTCAG 58.366 40.741 0.00 0.00 0.00 3.02
93 94 8.138712 CCTCCGTCCTATAATATAAGATTCAGC 58.861 40.741 0.00 0.00 0.00 4.26
94 95 8.824756 TCCGTCCTATAATATAAGATTCAGCT 57.175 34.615 0.00 0.00 0.00 4.24
96 97 9.307121 CCGTCCTATAATATAAGATTCAGCTTG 57.693 37.037 0.00 0.00 0.00 4.01
98 99 9.658799 GTCCTATAATATAAGATTCAGCTTGCA 57.341 33.333 0.00 0.00 0.00 4.08
103 104 7.975866 AATATAAGATTCAGCTTGCAAAACG 57.024 32.000 0.00 0.00 0.00 3.60
104 105 3.988379 AAGATTCAGCTTGCAAAACGA 57.012 38.095 0.00 0.00 0.00 3.85
105 106 4.510038 AAGATTCAGCTTGCAAAACGAT 57.490 36.364 0.00 0.00 0.00 3.73
106 107 4.088823 AGATTCAGCTTGCAAAACGATC 57.911 40.909 0.00 1.33 0.00 3.69
107 108 3.755378 AGATTCAGCTTGCAAAACGATCT 59.245 39.130 0.00 3.64 0.00 2.75
108 109 3.988379 TTCAGCTTGCAAAACGATCTT 57.012 38.095 0.00 0.00 0.00 2.40
109 110 5.412594 AGATTCAGCTTGCAAAACGATCTTA 59.587 36.000 0.00 0.00 0.00 2.10
110 111 5.627499 TTCAGCTTGCAAAACGATCTTAT 57.373 34.783 0.00 0.00 0.00 1.73
111 112 6.735678 TTCAGCTTGCAAAACGATCTTATA 57.264 33.333 0.00 0.00 0.00 0.98
112 113 6.925610 TCAGCTTGCAAAACGATCTTATAT 57.074 33.333 0.00 0.00 0.00 0.86
113 114 7.320443 TCAGCTTGCAAAACGATCTTATATT 57.680 32.000 0.00 0.00 0.00 1.28
114 115 8.432110 TCAGCTTGCAAAACGATCTTATATTA 57.568 30.769 0.00 0.00 0.00 0.98
116 117 8.551205 CAGCTTGCAAAACGATCTTATATTAGA 58.449 33.333 0.00 0.00 0.00 2.10
117 118 9.109393 AGCTTGCAAAACGATCTTATATTAGAA 57.891 29.630 0.00 0.00 0.00 2.10
122 123 9.477484 GCAAAACGATCTTATATTAGAAGAGGA 57.523 33.333 6.87 0.00 36.41 3.71
125 126 7.948034 ACGATCTTATATTAGAAGAGGAGGG 57.052 40.000 6.87 0.00 36.41 4.30
128 129 7.832187 CGATCTTATATTAGAAGAGGAGGGACT 59.168 40.741 6.87 0.00 37.67 3.85
131 132 9.407957 TCTTATATTAGAAGAGGAGGGACTAGA 57.592 37.037 0.00 0.00 41.55 2.43
133 134 7.657352 ATATTAGAAGAGGAGGGACTAGACT 57.343 40.000 0.00 0.00 41.55 3.24
135 136 2.028876 GAAGAGGAGGGACTAGACTGC 58.971 57.143 0.00 0.00 41.55 4.40
136 137 1.003646 AGAGGAGGGACTAGACTGCA 58.996 55.000 0.00 0.00 41.55 4.41
137 138 1.064017 AGAGGAGGGACTAGACTGCAG 60.064 57.143 13.48 13.48 41.55 4.41
138 139 0.707616 AGGAGGGACTAGACTGCAGT 59.292 55.000 21.88 21.88 41.55 4.40
139 140 1.923850 AGGAGGGACTAGACTGCAGTA 59.076 52.381 21.73 3.87 41.55 2.74
140 141 2.092103 AGGAGGGACTAGACTGCAGTAG 60.092 54.545 21.73 17.22 41.55 2.57
141 142 2.092321 GGAGGGACTAGACTGCAGTAGA 60.092 54.545 21.73 9.77 41.55 2.59
142 143 3.211045 GAGGGACTAGACTGCAGTAGAG 58.789 54.545 21.73 21.09 41.55 2.43
143 144 2.847449 AGGGACTAGACTGCAGTAGAGA 59.153 50.000 26.44 10.77 36.02 3.10
144 145 2.946990 GGGACTAGACTGCAGTAGAGAC 59.053 54.545 26.44 21.34 0.00 3.36
146 147 3.523547 GACTAGACTGCAGTAGAGACGA 58.476 50.000 26.44 9.20 0.00 4.20
147 148 3.264104 ACTAGACTGCAGTAGAGACGAC 58.736 50.000 26.44 11.22 0.00 4.34
148 149 1.080298 AGACTGCAGTAGAGACGACG 58.920 55.000 21.73 0.00 0.00 5.12
149 150 0.797542 GACTGCAGTAGAGACGACGT 59.202 55.000 21.73 0.00 0.00 4.34
150 151 1.197264 GACTGCAGTAGAGACGACGTT 59.803 52.381 21.73 0.00 0.00 3.99
151 152 1.069159 ACTGCAGTAGAGACGACGTTG 60.069 52.381 20.16 0.00 0.00 4.10
152 153 0.386858 TGCAGTAGAGACGACGTTGC 60.387 55.000 12.02 12.02 0.00 4.17
153 154 1.071567 GCAGTAGAGACGACGTTGCC 61.072 60.000 0.13 0.00 0.00 4.52
154 155 0.793478 CAGTAGAGACGACGTTGCCG 60.793 60.000 0.13 0.00 40.83 5.69
156 157 2.693762 TAGAGACGACGTTGCCGGG 61.694 63.158 2.18 0.00 38.78 5.73
157 158 4.047059 GAGACGACGTTGCCGGGA 62.047 66.667 2.18 0.00 38.78 5.14
159 160 3.408851 GACGACGTTGCCGGGAAC 61.409 66.667 27.34 27.34 38.78 3.62
173 174 2.781631 GGAACCCCCAACAGGTAGA 58.218 57.895 0.00 0.00 36.27 2.59
174 175 0.618981 GGAACCCCCAACAGGTAGAG 59.381 60.000 0.00 0.00 36.27 2.43
176 177 1.703513 GAACCCCCAACAGGTAGAGTT 59.296 52.381 0.00 0.00 36.27 3.01
177 178 2.727429 ACCCCCAACAGGTAGAGTTA 57.273 50.000 0.00 0.00 35.24 2.24
178 179 2.263545 ACCCCCAACAGGTAGAGTTAC 58.736 52.381 0.00 0.00 35.24 2.50
181 182 3.442076 CCCCAACAGGTAGAGTTACTCT 58.558 50.000 19.35 19.35 43.83 3.24
182 183 3.195825 CCCCAACAGGTAGAGTTACTCTG 59.804 52.174 23.60 10.96 41.37 3.35
183 184 3.833070 CCCAACAGGTAGAGTTACTCTGT 59.167 47.826 23.60 11.59 41.37 3.41
184 185 4.082136 CCCAACAGGTAGAGTTACTCTGTC 60.082 50.000 23.60 15.71 41.37 3.51
185 186 4.767928 CCAACAGGTAGAGTTACTCTGTCT 59.232 45.833 23.60 16.80 41.37 3.41
187 188 6.433404 CCAACAGGTAGAGTTACTCTGTCTTA 59.567 42.308 23.60 1.32 41.37 2.10
188 189 7.362229 CCAACAGGTAGAGTTACTCTGTCTTAG 60.362 44.444 23.60 11.94 41.37 2.18
201 202 1.615502 GTCTTAGAGACGACGTTGCC 58.384 55.000 0.13 0.00 35.28 4.52
202 203 0.167470 TCTTAGAGACGACGTTGCCG 59.833 55.000 0.13 0.00 40.83 5.69
203 204 0.797249 CTTAGAGACGACGTTGCCGG 60.797 60.000 0.13 0.00 38.78 6.13
206 207 3.562779 GAGACGACGTTGCCGGGAA 62.563 63.158 3.37 3.37 38.78 3.97
207 208 2.433664 GACGACGTTGCCGGGAAT 60.434 61.111 12.99 0.00 38.78 3.01
208 209 2.433664 ACGACGTTGCCGGGAATC 60.434 61.111 12.99 5.34 38.78 2.52
209 210 3.192922 CGACGTTGCCGGGAATCC 61.193 66.667 12.99 0.00 38.78 3.01
210 211 2.046700 GACGTTGCCGGGAATCCA 60.047 61.111 12.99 0.00 38.78 3.41
212 213 3.131478 CGTTGCCGGGAATCCACC 61.131 66.667 12.99 0.00 0.00 4.61
214 215 1.605165 GTTGCCGGGAATCCACCAA 60.605 57.895 12.99 0.00 0.00 3.67
215 216 1.153989 TTGCCGGGAATCCACCAAA 59.846 52.632 3.37 0.00 0.00 3.28
216 217 1.182385 TTGCCGGGAATCCACCAAAC 61.182 55.000 3.37 0.00 0.00 2.93
217 218 2.348104 GCCGGGAATCCACCAAACC 61.348 63.158 2.18 0.00 0.00 3.27
218 219 2.043980 CCGGGAATCCACCAAACCG 61.044 63.158 0.09 0.00 40.89 4.44
219 220 1.003112 CGGGAATCCACCAAACCGA 60.003 57.895 0.09 0.00 43.69 4.69
220 221 0.393808 CGGGAATCCACCAAACCGAT 60.394 55.000 0.09 0.00 43.69 4.18
221 222 1.389555 GGGAATCCACCAAACCGATC 58.610 55.000 0.09 0.00 0.00 3.69
222 223 1.064685 GGGAATCCACCAAACCGATCT 60.065 52.381 0.09 0.00 0.00 2.75
223 224 2.017049 GGAATCCACCAAACCGATCTG 58.983 52.381 0.00 0.00 0.00 2.90
224 225 2.355716 GGAATCCACCAAACCGATCTGA 60.356 50.000 0.00 0.00 0.00 3.27
225 226 3.343617 GAATCCACCAAACCGATCTGAA 58.656 45.455 0.00 0.00 0.00 3.02
226 227 2.940994 TCCACCAAACCGATCTGAAA 57.059 45.000 0.00 0.00 0.00 2.69
227 228 3.433306 TCCACCAAACCGATCTGAAAT 57.567 42.857 0.00 0.00 0.00 2.17
228 229 4.561500 TCCACCAAACCGATCTGAAATA 57.438 40.909 0.00 0.00 0.00 1.40
229 230 4.258543 TCCACCAAACCGATCTGAAATAC 58.741 43.478 0.00 0.00 0.00 1.89
231 232 4.332819 CCACCAAACCGATCTGAAATACTC 59.667 45.833 0.00 0.00 0.00 2.59
232 233 5.178797 CACCAAACCGATCTGAAATACTCT 58.821 41.667 0.00 0.00 0.00 3.24
233 234 6.338146 CACCAAACCGATCTGAAATACTCTA 58.662 40.000 0.00 0.00 0.00 2.43
234 235 6.255887 CACCAAACCGATCTGAAATACTCTAC 59.744 42.308 0.00 0.00 0.00 2.59
235 236 5.753921 CCAAACCGATCTGAAATACTCTACC 59.246 44.000 0.00 0.00 0.00 3.18
236 237 4.832590 ACCGATCTGAAATACTCTACCG 57.167 45.455 0.00 0.00 0.00 4.02
237 238 3.004524 ACCGATCTGAAATACTCTACCGC 59.995 47.826 0.00 0.00 0.00 5.68
238 239 3.004419 CCGATCTGAAATACTCTACCGCA 59.996 47.826 0.00 0.00 0.00 5.69
239 240 3.975670 CGATCTGAAATACTCTACCGCAC 59.024 47.826 0.00 0.00 0.00 5.34
240 241 3.795623 TCTGAAATACTCTACCGCACC 57.204 47.619 0.00 0.00 0.00 5.01
241 242 3.093814 TCTGAAATACTCTACCGCACCA 58.906 45.455 0.00 0.00 0.00 4.17
242 243 3.512329 TCTGAAATACTCTACCGCACCAA 59.488 43.478 0.00 0.00 0.00 3.67
243 244 4.161565 TCTGAAATACTCTACCGCACCAAT 59.838 41.667 0.00 0.00 0.00 3.16
244 245 4.188462 TGAAATACTCTACCGCACCAATG 58.812 43.478 0.00 0.00 0.00 2.82
254 255 3.736100 CACCAATGCAGCGCGGAA 61.736 61.111 13.03 0.00 0.00 4.30
255 256 2.983030 ACCAATGCAGCGCGGAAA 60.983 55.556 13.03 0.00 0.00 3.13
256 257 2.504681 CCAATGCAGCGCGGAAAC 60.505 61.111 13.03 0.00 0.00 2.78
258 259 1.153978 CAATGCAGCGCGGAAACAT 60.154 52.632 13.03 2.19 0.00 2.71
259 260 0.733566 CAATGCAGCGCGGAAACATT 60.734 50.000 13.03 8.84 0.00 2.71
260 261 0.038343 AATGCAGCGCGGAAACATTT 60.038 45.000 13.03 0.00 0.00 2.32
261 262 0.733566 ATGCAGCGCGGAAACATTTG 60.734 50.000 13.03 0.00 0.00 2.32
263 264 0.456653 GCAGCGCGGAAACATTTGAT 60.457 50.000 13.03 0.00 0.00 2.57
265 266 1.650153 CAGCGCGGAAACATTTGATTG 59.350 47.619 8.83 0.00 0.00 2.67
266 267 1.539388 AGCGCGGAAACATTTGATTGA 59.461 42.857 8.83 0.00 0.00 2.57
267 268 1.913403 GCGCGGAAACATTTGATTGAG 59.087 47.619 8.83 0.00 0.00 3.02
269 270 3.820689 CGCGGAAACATTTGATTGAGAA 58.179 40.909 0.00 0.00 0.00 2.87
271 272 4.613622 CGCGGAAACATTTGATTGAGAACT 60.614 41.667 0.00 0.00 0.00 3.01
272 273 4.618489 GCGGAAACATTTGATTGAGAACTG 59.382 41.667 0.00 0.00 0.00 3.16
273 274 5.762045 CGGAAACATTTGATTGAGAACTGT 58.238 37.500 0.00 0.00 0.00 3.55
274 275 6.208644 CGGAAACATTTGATTGAGAACTGTT 58.791 36.000 0.00 0.00 0.00 3.16
276 277 6.421801 GGAAACATTTGATTGAGAACTGTTGG 59.578 38.462 0.00 0.00 0.00 3.77
277 278 6.713762 AACATTTGATTGAGAACTGTTGGA 57.286 33.333 0.00 0.00 0.00 3.53
278 279 6.713762 ACATTTGATTGAGAACTGTTGGAA 57.286 33.333 0.00 0.00 0.00 3.53
280 281 7.205297 ACATTTGATTGAGAACTGTTGGAAAG 58.795 34.615 0.00 0.00 0.00 2.62
281 282 6.773976 TTTGATTGAGAACTGTTGGAAAGT 57.226 33.333 0.00 0.00 0.00 2.66
282 283 5.756195 TGATTGAGAACTGTTGGAAAGTG 57.244 39.130 0.00 0.00 0.00 3.16
283 284 5.436175 TGATTGAGAACTGTTGGAAAGTGA 58.564 37.500 0.00 0.00 0.00 3.41
284 285 5.296780 TGATTGAGAACTGTTGGAAAGTGAC 59.703 40.000 0.00 0.00 0.00 3.67
285 286 3.194861 TGAGAACTGTTGGAAAGTGACG 58.805 45.455 0.00 0.00 0.00 4.35
288 289 2.684001 ACTGTTGGAAAGTGACGACA 57.316 45.000 0.00 0.00 0.00 4.35
290 291 2.550978 CTGTTGGAAAGTGACGACAGT 58.449 47.619 0.00 0.00 41.86 3.55
291 292 2.276201 TGTTGGAAAGTGACGACAGTG 58.724 47.619 0.00 0.00 0.00 3.66
292 293 2.093921 TGTTGGAAAGTGACGACAGTGA 60.094 45.455 0.00 0.00 0.00 3.41
293 294 2.509052 TGGAAAGTGACGACAGTGAG 57.491 50.000 0.00 0.00 0.00 3.51
294 295 1.140816 GGAAAGTGACGACAGTGAGC 58.859 55.000 0.00 0.00 0.00 4.26
295 296 1.269831 GGAAAGTGACGACAGTGAGCT 60.270 52.381 0.00 0.00 0.00 4.09
298 299 2.999507 AGTGACGACAGTGAGCTTAG 57.000 50.000 0.00 0.00 0.00 2.18
299 300 1.068194 AGTGACGACAGTGAGCTTAGC 60.068 52.381 0.00 0.00 0.00 3.09
300 301 1.068194 GTGACGACAGTGAGCTTAGCT 60.068 52.381 6.37 6.37 43.88 3.32
301 302 1.613925 TGACGACAGTGAGCTTAGCTT 59.386 47.619 8.58 0.00 39.88 3.74
303 304 3.119814 TGACGACAGTGAGCTTAGCTTAG 60.120 47.826 8.58 0.00 39.88 2.18
304 305 2.820787 ACGACAGTGAGCTTAGCTTAGT 59.179 45.455 8.58 4.02 39.88 2.24
307 308 5.048224 ACGACAGTGAGCTTAGCTTAGTTTA 60.048 40.000 8.58 0.00 39.88 2.01
308 309 6.037098 CGACAGTGAGCTTAGCTTAGTTTAT 58.963 40.000 8.58 0.00 39.88 1.40
311 312 8.068892 ACAGTGAGCTTAGCTTAGTTTATACT 57.931 34.615 8.58 1.06 39.88 2.12
313 314 7.650104 CAGTGAGCTTAGCTTAGTTTATACTCC 59.350 40.741 8.58 0.00 39.88 3.85
315 316 7.650104 GTGAGCTTAGCTTAGTTTATACTCCAG 59.350 40.741 8.58 0.00 39.88 3.86
317 318 8.080363 AGCTTAGCTTAGTTTATACTCCAGTT 57.920 34.615 0.00 0.00 33.89 3.16
354 355 2.107141 CCGCATTCGTCTCCCTCC 59.893 66.667 0.00 0.00 0.00 4.30
356 357 1.066587 CGCATTCGTCTCCCTCCTC 59.933 63.158 0.00 0.00 0.00 3.71
357 358 1.066587 GCATTCGTCTCCCTCCTCG 59.933 63.158 0.00 0.00 0.00 4.63
375 376 3.728845 CTCGAGGAGAGGAGAGTAGAAG 58.271 54.545 3.91 0.00 43.20 2.85
376 377 3.109151 TCGAGGAGAGGAGAGTAGAAGT 58.891 50.000 0.00 0.00 0.00 3.01
399 407 1.005332 CCCTCACTCAGGTCTCTCTCA 59.995 57.143 0.00 0.00 41.51 3.27
402 410 3.009723 CTCACTCAGGTCTCTCTCACTC 58.990 54.545 0.00 0.00 0.00 3.51
403 411 2.642311 TCACTCAGGTCTCTCTCACTCT 59.358 50.000 0.00 0.00 0.00 3.24
404 412 3.009723 CACTCAGGTCTCTCTCACTCTC 58.990 54.545 0.00 0.00 0.00 3.20
405 413 2.912956 ACTCAGGTCTCTCTCACTCTCT 59.087 50.000 0.00 0.00 0.00 3.10
406 414 3.273434 CTCAGGTCTCTCTCACTCTCTG 58.727 54.545 0.00 0.00 0.00 3.35
407 415 2.642311 TCAGGTCTCTCTCACTCTCTGT 59.358 50.000 0.00 0.00 0.00 3.41
408 416 3.073798 TCAGGTCTCTCTCACTCTCTGTT 59.926 47.826 0.00 0.00 0.00 3.16
409 417 4.287326 TCAGGTCTCTCTCACTCTCTGTTA 59.713 45.833 0.00 0.00 0.00 2.41
410 418 5.007034 CAGGTCTCTCTCACTCTCTGTTAA 58.993 45.833 0.00 0.00 0.00 2.01
412 420 6.152661 CAGGTCTCTCTCACTCTCTGTTAATT 59.847 42.308 0.00 0.00 0.00 1.40
413 421 6.723977 AGGTCTCTCTCACTCTCTGTTAATTT 59.276 38.462 0.00 0.00 0.00 1.82
414 422 6.811170 GGTCTCTCTCACTCTCTGTTAATTTG 59.189 42.308 0.00 0.00 0.00 2.32
415 423 7.375053 GTCTCTCTCACTCTCTGTTAATTTGT 58.625 38.462 0.00 0.00 0.00 2.83
416 424 7.870445 GTCTCTCTCACTCTCTGTTAATTTGTT 59.130 37.037 0.00 0.00 0.00 2.83
417 425 7.869937 TCTCTCTCACTCTCTGTTAATTTGTTG 59.130 37.037 0.00 0.00 0.00 3.33
418 426 6.931281 TCTCTCACTCTCTGTTAATTTGTTGG 59.069 38.462 0.00 0.00 0.00 3.77
419 427 6.826668 TCTCACTCTCTGTTAATTTGTTGGA 58.173 36.000 0.00 0.00 0.00 3.53
420 428 6.931281 TCTCACTCTCTGTTAATTTGTTGGAG 59.069 38.462 0.00 0.00 0.00 3.86
423 431 7.939039 TCACTCTCTGTTAATTTGTTGGAGAAT 59.061 33.333 0.00 0.00 0.00 2.40
425 433 9.793259 ACTCTCTGTTAATTTGTTGGAGAATAA 57.207 29.630 0.00 0.00 0.00 1.40
454 462 5.163499 GGAGTATATCCTTTGCCTCGATAGG 60.163 48.000 0.00 0.00 45.64 2.57
467 475 4.116238 CCTCGATAGGCTTTGTTTCTCTC 58.884 47.826 0.00 0.00 35.64 3.20
468 476 4.382040 CCTCGATAGGCTTTGTTTCTCTCA 60.382 45.833 0.00 0.00 35.64 3.27
470 478 5.171476 TCGATAGGCTTTGTTTCTCTCAAG 58.829 41.667 0.00 0.00 0.00 3.02
471 479 4.331168 CGATAGGCTTTGTTTCTCTCAAGG 59.669 45.833 0.00 0.00 0.00 3.61
473 481 4.170468 AGGCTTTGTTTCTCTCAAGGAA 57.830 40.909 0.00 0.00 0.00 3.36
482 490 1.691976 TCTCTCAAGGAAACGGAGCAA 59.308 47.619 0.00 0.00 36.82 3.91
483 491 2.104111 TCTCTCAAGGAAACGGAGCAAA 59.896 45.455 0.00 0.00 36.82 3.68
485 493 2.158813 TCTCAAGGAAACGGAGCAAACT 60.159 45.455 0.00 0.00 36.82 2.66
486 494 2.618709 CTCAAGGAAACGGAGCAAACTT 59.381 45.455 0.00 0.00 31.58 2.66
488 496 2.341846 AGGAAACGGAGCAAACTTGA 57.658 45.000 0.00 0.00 0.00 3.02
489 497 2.222027 AGGAAACGGAGCAAACTTGAG 58.778 47.619 0.00 0.00 0.00 3.02
490 498 1.335051 GGAAACGGAGCAAACTTGAGC 60.335 52.381 0.00 0.00 0.00 4.26
491 499 1.604278 GAAACGGAGCAAACTTGAGCT 59.396 47.619 0.00 0.00 45.25 4.09
492 500 1.680338 AACGGAGCAAACTTGAGCTT 58.320 45.000 0.00 0.00 42.04 3.74
493 501 1.230324 ACGGAGCAAACTTGAGCTTC 58.770 50.000 0.00 0.00 42.04 3.86
495 503 0.110010 GGAGCAAACTTGAGCTTCGC 60.110 55.000 0.00 0.00 42.04 4.70
496 504 0.871057 GAGCAAACTTGAGCTTCGCT 59.129 50.000 0.00 0.00 42.04 4.93
504 512 3.184683 GAGCTTCGCTCGGCACAG 61.185 66.667 0.00 0.00 45.85 3.66
505 513 3.633094 GAGCTTCGCTCGGCACAGA 62.633 63.158 0.00 0.00 45.85 3.41
506 514 3.482783 GCTTCGCTCGGCACAGAC 61.483 66.667 0.00 0.00 0.00 3.51
508 516 2.049156 TTCGCTCGGCACAGACAG 60.049 61.111 0.00 0.00 0.00 3.51
509 517 2.477972 CTTCGCTCGGCACAGACAGA 62.478 60.000 0.00 0.00 0.00 3.41
510 518 2.049156 CGCTCGGCACAGACAGAA 60.049 61.111 0.00 0.00 0.00 3.02
511 519 2.375766 CGCTCGGCACAGACAGAAC 61.376 63.158 0.00 0.00 0.00 3.01
512 520 1.005630 GCTCGGCACAGACAGAACT 60.006 57.895 0.00 0.00 0.00 3.01
513 521 0.243907 GCTCGGCACAGACAGAACTA 59.756 55.000 0.00 0.00 0.00 2.24
515 523 2.534298 CTCGGCACAGACAGAACTATG 58.466 52.381 0.00 0.00 0.00 2.23
516 524 1.002366 CGGCACAGACAGAACTATGC 58.998 55.000 0.00 0.00 39.26 3.14
517 525 1.404717 CGGCACAGACAGAACTATGCT 60.405 52.381 0.00 0.00 39.80 3.79
521 529 3.069289 CACAGACAGAACTATGCTTGCA 58.931 45.455 0.00 0.00 0.00 4.08
522 530 3.688185 CACAGACAGAACTATGCTTGCAT 59.312 43.478 12.88 12.88 0.00 3.96
523 531 4.872124 CACAGACAGAACTATGCTTGCATA 59.128 41.667 13.72 13.72 0.00 3.14
524 532 5.526479 CACAGACAGAACTATGCTTGCATAT 59.474 40.000 14.63 2.53 0.00 1.78
525 533 6.037940 CACAGACAGAACTATGCTTGCATATT 59.962 38.462 14.63 7.57 0.00 1.28
526 534 6.600822 ACAGACAGAACTATGCTTGCATATTT 59.399 34.615 14.63 14.81 0.00 1.40
527 535 7.770433 ACAGACAGAACTATGCTTGCATATTTA 59.230 33.333 14.63 0.00 0.00 1.40
528 536 8.066595 CAGACAGAACTATGCTTGCATATTTAC 58.933 37.037 14.63 9.89 0.00 2.01
529 537 6.948353 ACAGAACTATGCTTGCATATTTACG 58.052 36.000 14.63 11.77 0.00 3.18
530 538 6.761242 ACAGAACTATGCTTGCATATTTACGA 59.239 34.615 14.63 0.00 0.00 3.43
531 539 7.042456 ACAGAACTATGCTTGCATATTTACGAG 60.042 37.037 14.63 6.73 0.00 4.18
533 541 6.771188 ACTATGCTTGCATATTTACGAGAC 57.229 37.500 14.63 0.00 0.00 3.36
534 542 5.696724 ACTATGCTTGCATATTTACGAGACC 59.303 40.000 14.63 0.00 0.00 3.85
535 543 4.137116 TGCTTGCATATTTACGAGACCT 57.863 40.909 0.00 0.00 0.00 3.85
536 544 4.119862 TGCTTGCATATTTACGAGACCTC 58.880 43.478 0.00 0.00 0.00 3.85
538 546 4.570772 GCTTGCATATTTACGAGACCTCAA 59.429 41.667 0.00 0.00 0.00 3.02
539 547 5.064707 GCTTGCATATTTACGAGACCTCAAA 59.935 40.000 0.00 0.00 0.00 2.69
540 548 6.662414 TTGCATATTTACGAGACCTCAAAG 57.338 37.500 0.00 0.00 0.00 2.77
541 549 5.730550 TGCATATTTACGAGACCTCAAAGT 58.269 37.500 0.00 0.00 0.00 2.66
542 550 5.810587 TGCATATTTACGAGACCTCAAAGTC 59.189 40.000 0.00 0.00 37.01 3.01
544 552 4.884668 ATTTACGAGACCTCAAAGTCCA 57.115 40.909 0.00 0.00 37.49 4.02
546 554 2.821991 ACGAGACCTCAAAGTCCAAG 57.178 50.000 0.00 0.00 37.49 3.61
548 556 1.270305 CGAGACCTCAAAGTCCAAGCA 60.270 52.381 0.00 0.00 37.49 3.91
549 557 2.806745 CGAGACCTCAAAGTCCAAGCAA 60.807 50.000 0.00 0.00 37.49 3.91
550 558 2.810852 GAGACCTCAAAGTCCAAGCAAG 59.189 50.000 0.00 0.00 37.49 4.01
552 560 2.810852 GACCTCAAAGTCCAAGCAAGAG 59.189 50.000 0.00 0.00 0.00 2.85
553 561 2.439507 ACCTCAAAGTCCAAGCAAGAGA 59.560 45.455 0.00 0.00 0.00 3.10
554 562 3.073650 ACCTCAAAGTCCAAGCAAGAGAT 59.926 43.478 0.00 0.00 0.00 2.75
567 575 2.353505 GCAAGAGATCACAGTCTGAGCA 60.354 50.000 6.91 0.00 37.80 4.26
635 643 2.070783 GCACATTTGCCCAATCAGTTG 58.929 47.619 0.00 0.00 43.66 3.16
638 646 2.028748 ACATTTGCCCAATCAGTTGAGC 60.029 45.455 0.00 0.00 39.29 4.26
644 652 1.280133 CCCAATCAGTTGAGCTCAGGA 59.720 52.381 17.43 15.75 37.53 3.86
660 672 4.159135 GCTCAGGACAACATGGAAATGAAT 59.841 41.667 0.00 0.00 0.00 2.57
697 709 4.498345 GCTCTCCTGTTATCCGTAGACTTG 60.498 50.000 0.00 0.00 0.00 3.16
731 743 4.084433 GCGTCGCCGACCAAATTAATATTA 60.084 41.667 12.26 0.00 35.63 0.98
736 748 4.145997 CCGACCAAATTAATATTACGCGC 58.854 43.478 5.73 0.00 0.00 6.86
753 765 1.372128 GCTGCTTGCAAGAAACGGG 60.372 57.895 30.39 8.87 42.31 5.28
758 770 0.318107 CTTGCAAGAAACGGGCAGTG 60.318 55.000 22.31 0.00 38.97 3.66
783 819 1.000843 CTGGATTGTGTCGTGGAGTCA 59.999 52.381 0.00 0.00 0.00 3.41
787 823 0.828022 TTGTGTCGTGGAGTCAACCT 59.172 50.000 0.00 0.00 0.00 3.50
789 825 0.387929 GTGTCGTGGAGTCAACCTCA 59.612 55.000 0.00 0.00 42.40 3.86
790 826 1.116308 TGTCGTGGAGTCAACCTCAA 58.884 50.000 0.00 0.00 42.40 3.02
887 937 3.670311 TCTCACGTCATTCTACGCTAC 57.330 47.619 0.00 0.00 46.71 3.58
891 941 3.189910 TCACGTCATTCTACGCTACACTT 59.810 43.478 0.00 0.00 46.71 3.16
906 956 5.564848 CGCTACACTTGCTTCTATATAGCCA 60.565 44.000 4.75 0.00 37.85 4.75
909 959 5.059833 ACACTTGCTTCTATATAGCCAAGC 58.940 41.667 21.19 21.19 41.43 4.01
934 994 0.455633 GTACGCCGGTGTACACAGAG 60.456 60.000 40.16 19.88 43.32 3.35
939 999 1.669211 GCCGGTGTACACAGAGTTCTC 60.669 57.143 26.51 6.46 0.00 2.87
969 1029 8.617290 GGAACTTCCTAAGAATACTTCACAAA 57.383 34.615 0.00 0.00 37.53 2.83
986 1046 9.429359 ACTTCACAAATAGTCTTGAGAATACTG 57.571 33.333 0.00 0.00 36.00 2.74
987 1047 7.834068 TCACAAATAGTCTTGAGAATACTGC 57.166 36.000 0.00 0.00 0.00 4.40
989 1049 8.043113 TCACAAATAGTCTTGAGAATACTGCAT 58.957 33.333 0.00 0.00 0.00 3.96
1037 1106 2.743928 GAGGCCACTGCTGAACCG 60.744 66.667 5.01 0.00 37.74 4.44
1069 1164 0.035317 TGCACAGACACAGGTGATCC 59.965 55.000 6.40 0.00 37.18 3.36
1073 1168 0.174389 CAGACACAGGTGATCCTCCG 59.826 60.000 6.40 0.00 43.07 4.63
1080 1175 0.324368 AGGTGATCCTCCGTGCTGTA 60.324 55.000 0.00 0.00 40.58 2.74
1086 1181 2.526304 TCCTCCGTGCTGTATAATGC 57.474 50.000 0.00 0.00 0.00 3.56
1093 1204 6.017109 CCTCCGTGCTGTATAATGCTAAAATT 60.017 38.462 0.00 0.00 0.00 1.82
1157 1293 2.158957 TGTTCAGGACGAAAGCTCAAGT 60.159 45.455 0.00 0.00 34.69 3.16
1318 1475 8.297470 TCCCTACAGAAGTAATAACGTGTTAT 57.703 34.615 0.00 0.00 37.36 1.89
1328 1485 1.153353 AACGTGTTATGCCTTGGACG 58.847 50.000 0.00 0.00 0.00 4.79
1598 1831 6.451393 TGAATTTACTGTAAAATGGTGTGCC 58.549 36.000 16.14 0.00 0.00 5.01
1671 1913 2.281345 GCCAGGGGATGCTCATCG 60.281 66.667 4.02 0.00 38.69 3.84
1946 2188 2.446435 GTATGGGTGCAGGACAACATT 58.554 47.619 6.77 0.00 37.92 2.71
1949 2191 0.539438 GGGTGCAGGACAACATTGGA 60.539 55.000 0.00 0.00 37.92 3.53
2035 2280 2.172082 GGGGGAGGATTTACAGGTACAC 59.828 54.545 0.00 0.00 0.00 2.90
2161 2406 1.060266 CGAAAATGACAGAGCTGAGCG 59.940 52.381 4.21 0.00 0.00 5.03
2315 2560 1.354040 CGTCGCTGCTCATCTTCTTT 58.646 50.000 0.00 0.00 0.00 2.52
2867 4678 2.206576 ACTTCTTCTGGTTCATGGCC 57.793 50.000 0.00 0.00 0.00 5.36
2945 4756 8.715191 AAAGCATAGATCAGCATTAGTATAGC 57.285 34.615 0.00 0.00 0.00 2.97
2992 4806 9.490663 AATTTGAAAATCTTTCATCGATCGTAC 57.509 29.630 15.94 0.00 0.00 3.67
2993 4807 7.827819 TTGAAAATCTTTCATCGATCGTACT 57.172 32.000 15.94 0.00 0.00 2.73
2994 4808 7.827819 TGAAAATCTTTCATCGATCGTACTT 57.172 32.000 15.94 0.00 0.00 2.24
2995 4809 7.675478 TGAAAATCTTTCATCGATCGTACTTG 58.325 34.615 15.94 9.07 0.00 3.16
2996 4810 7.544217 TGAAAATCTTTCATCGATCGTACTTGA 59.456 33.333 15.94 11.17 0.00 3.02
2997 4811 7.827819 AAATCTTTCATCGATCGTACTTGAA 57.172 32.000 15.94 15.91 0.00 2.69
2998 4812 6.814076 ATCTTTCATCGATCGTACTTGAAC 57.186 37.500 15.94 0.00 0.00 3.18
2999 4813 5.705902 TCTTTCATCGATCGTACTTGAACA 58.294 37.500 15.94 7.13 0.00 3.18
3000 4814 6.153756 TCTTTCATCGATCGTACTTGAACAA 58.846 36.000 15.94 8.12 0.00 2.83
3001 4815 6.308041 TCTTTCATCGATCGTACTTGAACAAG 59.692 38.462 15.94 12.22 43.79 3.16
3002 4816 5.305139 TCATCGATCGTACTTGAACAAGA 57.695 39.130 15.94 2.86 40.79 3.02
3003 4817 5.705902 TCATCGATCGTACTTGAACAAGAA 58.294 37.500 15.94 4.46 40.79 2.52
3004 4818 6.330278 TCATCGATCGTACTTGAACAAGAAT 58.670 36.000 15.94 8.30 40.79 2.40
3005 4819 7.477494 TCATCGATCGTACTTGAACAAGAATA 58.523 34.615 15.94 1.93 40.79 1.75
3006 4820 8.135529 TCATCGATCGTACTTGAACAAGAATAT 58.864 33.333 15.94 8.28 40.79 1.28
3007 4821 8.755941 CATCGATCGTACTTGAACAAGAATATT 58.244 33.333 15.94 0.00 40.79 1.28
3008 4822 8.115491 TCGATCGTACTTGAACAAGAATATTG 57.885 34.615 15.94 11.04 40.79 1.90
3009 4823 7.758076 TCGATCGTACTTGAACAAGAATATTGT 59.242 33.333 15.94 0.00 40.79 2.71
3010 4824 8.380644 CGATCGTACTTGAACAAGAATATTGTT 58.619 33.333 19.35 5.62 44.43 2.83
3020 4834 6.190954 ACAAGAATATTGTTCCCGTTTAGC 57.809 37.500 0.00 0.00 0.00 3.09
3021 4835 5.944007 ACAAGAATATTGTTCCCGTTTAGCT 59.056 36.000 0.00 0.00 0.00 3.32
3022 4836 6.433093 ACAAGAATATTGTTCCCGTTTAGCTT 59.567 34.615 0.00 0.00 0.00 3.74
3023 4837 6.679327 AGAATATTGTTCCCGTTTAGCTTC 57.321 37.500 0.00 0.00 0.00 3.86
3024 4838 6.415573 AGAATATTGTTCCCGTTTAGCTTCT 58.584 36.000 0.00 0.00 0.00 2.85
3025 4839 6.884836 AGAATATTGTTCCCGTTTAGCTTCTT 59.115 34.615 0.00 0.00 0.00 2.52
3026 4840 4.766404 ATTGTTCCCGTTTAGCTTCTTG 57.234 40.909 0.00 0.00 0.00 3.02
3027 4841 2.500229 TGTTCCCGTTTAGCTTCTTGG 58.500 47.619 0.00 0.00 0.00 3.61
3028 4842 1.199327 GTTCCCGTTTAGCTTCTTGGC 59.801 52.381 0.00 0.00 0.00 4.52
3029 4843 0.672401 TCCCGTTTAGCTTCTTGGCG 60.672 55.000 0.00 0.00 37.29 5.69
3030 4844 0.672401 CCCGTTTAGCTTCTTGGCGA 60.672 55.000 0.00 0.00 37.29 5.54
3031 4845 0.442699 CCGTTTAGCTTCTTGGCGAC 59.557 55.000 0.00 0.00 37.29 5.19
3032 4846 0.093026 CGTTTAGCTTCTTGGCGACG 59.907 55.000 0.00 0.00 37.29 5.12
3033 4847 1.145803 GTTTAGCTTCTTGGCGACGT 58.854 50.000 0.00 0.00 37.29 4.34
3034 4848 2.331194 GTTTAGCTTCTTGGCGACGTA 58.669 47.619 0.00 0.00 37.29 3.57
3035 4849 2.928116 GTTTAGCTTCTTGGCGACGTAT 59.072 45.455 0.00 0.00 37.29 3.06
3036 4850 2.203800 TAGCTTCTTGGCGACGTATG 57.796 50.000 0.00 0.00 37.29 2.39
3037 4851 0.530744 AGCTTCTTGGCGACGTATGA 59.469 50.000 0.00 0.00 37.29 2.15
3038 4852 1.067142 AGCTTCTTGGCGACGTATGAA 60.067 47.619 0.00 0.27 37.29 2.57
3039 4853 1.324736 GCTTCTTGGCGACGTATGAAG 59.675 52.381 17.44 17.44 35.42 3.02
3040 4854 2.607187 CTTCTTGGCGACGTATGAAGT 58.393 47.619 15.30 0.00 0.00 3.01
3041 4855 2.736144 TCTTGGCGACGTATGAAGTT 57.264 45.000 0.00 0.00 0.00 2.66
3042 4856 3.034721 TCTTGGCGACGTATGAAGTTT 57.965 42.857 0.00 0.00 0.00 2.66
3043 4857 3.395639 TCTTGGCGACGTATGAAGTTTT 58.604 40.909 0.00 0.00 0.00 2.43
3044 4858 3.810941 TCTTGGCGACGTATGAAGTTTTT 59.189 39.130 0.00 0.00 0.00 1.94
3081 4895 3.670203 GGCGACGTATCAAGTGAAAATG 58.330 45.455 0.00 0.00 0.00 2.32
3082 4896 3.485216 GGCGACGTATCAAGTGAAAATGG 60.485 47.826 0.00 0.00 0.00 3.16
3083 4897 3.369756 GCGACGTATCAAGTGAAAATGGA 59.630 43.478 0.00 0.00 0.00 3.41
3084 4898 4.034048 GCGACGTATCAAGTGAAAATGGAT 59.966 41.667 0.00 0.00 0.00 3.41
3085 4899 5.447279 GCGACGTATCAAGTGAAAATGGATT 60.447 40.000 0.00 0.00 0.00 3.01
3086 4900 6.542852 CGACGTATCAAGTGAAAATGGATTT 58.457 36.000 0.00 0.00 0.00 2.17
3087 4901 6.682863 CGACGTATCAAGTGAAAATGGATTTC 59.317 38.462 0.00 0.00 46.30 2.17
3098 4912 6.849588 GAAAATGGATTTCAGTGCAAACTT 57.150 33.333 0.00 0.00 45.58 2.66
3099 4913 6.849588 AAAATGGATTTCAGTGCAAACTTC 57.150 33.333 0.00 0.00 0.00 3.01
3100 4914 5.534207 AATGGATTTCAGTGCAAACTTCA 57.466 34.783 0.00 0.00 0.00 3.02
3101 4915 4.998671 TGGATTTCAGTGCAAACTTCAA 57.001 36.364 0.00 0.00 0.00 2.69
3102 4916 5.336150 TGGATTTCAGTGCAAACTTCAAA 57.664 34.783 0.00 0.00 0.00 2.69
3103 4917 5.916318 TGGATTTCAGTGCAAACTTCAAAT 58.084 33.333 0.00 0.00 0.00 2.32
3104 4918 7.048629 TGGATTTCAGTGCAAACTTCAAATA 57.951 32.000 0.00 0.00 0.00 1.40
3105 4919 7.669427 TGGATTTCAGTGCAAACTTCAAATAT 58.331 30.769 0.00 0.00 0.00 1.28
3106 4920 8.149647 TGGATTTCAGTGCAAACTTCAAATATT 58.850 29.630 0.00 0.00 0.00 1.28
3107 4921 8.992073 GGATTTCAGTGCAAACTTCAAATATTT 58.008 29.630 0.00 0.00 0.00 1.40
3117 4931 9.410556 GCAAACTTCAAATATTTTGCTTCTAGA 57.589 29.630 11.34 0.00 46.68 2.43
3120 4934 9.578439 AACTTCAAATATTTTGCTTCTAGATGC 57.422 29.630 20.73 20.73 0.00 3.91
3121 4935 8.964772 ACTTCAAATATTTTGCTTCTAGATGCT 58.035 29.630 25.75 12.16 33.23 3.79
3122 4936 9.234384 CTTCAAATATTTTGCTTCTAGATGCTG 57.766 33.333 25.75 15.58 33.23 4.41
3123 4937 7.709947 TCAAATATTTTGCTTCTAGATGCTGG 58.290 34.615 25.75 6.91 33.23 4.85
3124 4938 7.557358 TCAAATATTTTGCTTCTAGATGCTGGA 59.443 33.333 25.75 14.43 33.23 3.86
3125 4939 6.874288 ATATTTTGCTTCTAGATGCTGGAC 57.126 37.500 25.75 3.39 33.23 4.02
3126 4940 3.988976 TTTGCTTCTAGATGCTGGACT 57.011 42.857 25.75 0.00 33.23 3.85
3127 4941 3.533606 TTGCTTCTAGATGCTGGACTC 57.466 47.619 25.75 2.16 33.23 3.36
3128 4942 2.744760 TGCTTCTAGATGCTGGACTCT 58.255 47.619 25.75 0.00 33.23 3.24
3129 4943 3.903467 TGCTTCTAGATGCTGGACTCTA 58.097 45.455 25.75 5.73 33.23 2.43
3130 4944 3.888323 TGCTTCTAGATGCTGGACTCTAG 59.112 47.826 25.75 4.10 41.47 2.43
3131 4945 4.141287 GCTTCTAGATGCTGGACTCTAGA 58.859 47.826 20.36 11.40 45.08 2.43
3132 4946 4.766891 GCTTCTAGATGCTGGACTCTAGAT 59.233 45.833 20.36 0.00 45.69 1.98
3133 4947 5.335897 GCTTCTAGATGCTGGACTCTAGATG 60.336 48.000 20.36 15.69 45.69 2.90
3134 4948 4.661222 TCTAGATGCTGGACTCTAGATGG 58.339 47.826 11.40 0.00 43.05 3.51
3135 4949 3.326946 AGATGCTGGACTCTAGATGGT 57.673 47.619 0.00 0.00 0.00 3.55
3136 4950 3.230134 AGATGCTGGACTCTAGATGGTC 58.770 50.000 3.99 3.99 0.00 4.02
3143 4957 3.791973 GACTCTAGATGGTCCACAGTG 57.208 52.381 0.00 0.00 0.00 3.66
3166 4980 9.667107 AGTGATTTTGTTAGAATAAATCCGAGA 57.333 29.630 0.00 0.00 37.43 4.04
3212 5026 4.232221 GACACCGAGATTTGTTAACGAGA 58.768 43.478 0.26 0.00 0.00 4.04
3249 5063 0.259065 ATCTCCGAGGCCTGACTACA 59.741 55.000 12.00 0.00 0.00 2.74
3250 5064 0.259065 TCTCCGAGGCCTGACTACAT 59.741 55.000 12.00 0.00 0.00 2.29
3259 5075 0.176680 CCTGACTACATGCGCTCCTT 59.823 55.000 9.73 0.00 0.00 3.36
3317 5133 2.819154 CGCCGGCACATGTCATCA 60.819 61.111 28.98 0.00 0.00 3.07
3354 7411 3.068590 GCCTGTGCTATTATGTTGGCATT 59.931 43.478 0.00 0.00 38.99 3.56
3398 7455 4.446455 CCCGCTATATATGAGAGGCCTAGA 60.446 50.000 4.42 0.00 32.89 2.43
3447 7504 8.141909 CGACTCCATATCCTATCTAAACACAAA 58.858 37.037 0.00 0.00 0.00 2.83
3513 7576 6.183361 ACAACTCTAATAAACTCCACCTTGGT 60.183 38.462 0.00 0.00 39.03 3.67
3627 7690 4.816048 AGACTCCATATGACTCCACCTA 57.184 45.455 3.65 0.00 0.00 3.08
3641 7704 3.833070 CTCCACCTACAACTTGTAGTCCT 59.167 47.826 22.12 6.68 46.68 3.85
3659 7722 5.261216 AGTCCTTTCTTTTCTTGACCACAA 58.739 37.500 0.00 0.00 34.65 3.33
3852 7915 1.597663 CGACCGCTTGTCTGAAACTTT 59.402 47.619 2.36 0.00 42.13 2.66
3853 7916 2.031683 CGACCGCTTGTCTGAAACTTTT 59.968 45.455 2.36 0.00 42.13 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.874195 CCAGACTCCATCCTCTCATAATATATA 57.126 37.037 0.00 0.00 0.00 0.86
21 22 7.788867 CCCAGACTCCATCCTCTCATAATATAT 59.211 40.741 0.00 0.00 0.00 0.86
24 25 5.076458 TCCCAGACTCCATCCTCTCATAATA 59.924 44.000 0.00 0.00 0.00 0.98
25 26 4.140591 TCCCAGACTCCATCCTCTCATAAT 60.141 45.833 0.00 0.00 0.00 1.28
26 27 3.207549 TCCCAGACTCCATCCTCTCATAA 59.792 47.826 0.00 0.00 0.00 1.90
27 28 2.791774 TCCCAGACTCCATCCTCTCATA 59.208 50.000 0.00 0.00 0.00 2.15
28 29 1.577729 TCCCAGACTCCATCCTCTCAT 59.422 52.381 0.00 0.00 0.00 2.90
29 30 1.010795 TCCCAGACTCCATCCTCTCA 58.989 55.000 0.00 0.00 0.00 3.27
30 31 2.397044 ATCCCAGACTCCATCCTCTC 57.603 55.000 0.00 0.00 0.00 3.20
31 32 2.249743 AGAATCCCAGACTCCATCCTCT 59.750 50.000 0.00 0.00 0.00 3.69
32 33 2.688477 AGAATCCCAGACTCCATCCTC 58.312 52.381 0.00 0.00 0.00 3.71
34 35 3.941704 AAAGAATCCCAGACTCCATCC 57.058 47.619 0.00 0.00 0.00 3.51
35 36 5.129485 TCTGTAAAGAATCCCAGACTCCATC 59.871 44.000 0.00 0.00 0.00 3.51
36 37 5.032846 TCTGTAAAGAATCCCAGACTCCAT 58.967 41.667 0.00 0.00 0.00 3.41
37 38 4.425772 TCTGTAAAGAATCCCAGACTCCA 58.574 43.478 0.00 0.00 0.00 3.86
38 39 5.422214 TTCTGTAAAGAATCCCAGACTCC 57.578 43.478 0.00 0.00 33.90 3.85
39 40 8.261522 AGTAATTCTGTAAAGAATCCCAGACTC 58.738 37.037 8.64 0.00 37.52 3.36
40 41 8.152023 AGTAATTCTGTAAAGAATCCCAGACT 57.848 34.615 8.64 5.30 37.52 3.24
42 43 7.365652 GGGAGTAATTCTGTAAAGAATCCCAGA 60.366 40.741 20.68 0.22 40.51 3.86
45 46 6.901300 AGGGAGTAATTCTGTAAAGAATCCC 58.099 40.000 18.93 18.93 40.84 3.85
46 47 6.993308 GGAGGGAGTAATTCTGTAAAGAATCC 59.007 42.308 8.64 6.55 37.52 3.01
47 48 6.702282 CGGAGGGAGTAATTCTGTAAAGAATC 59.298 42.308 8.64 0.00 37.52 2.52
48 49 6.156429 ACGGAGGGAGTAATTCTGTAAAGAAT 59.844 38.462 1.97 1.97 39.93 2.40
49 50 5.482878 ACGGAGGGAGTAATTCTGTAAAGAA 59.517 40.000 0.00 0.00 0.00 2.52
50 51 5.021458 ACGGAGGGAGTAATTCTGTAAAGA 58.979 41.667 0.00 0.00 0.00 2.52
51 52 5.340439 ACGGAGGGAGTAATTCTGTAAAG 57.660 43.478 0.00 0.00 0.00 1.85
52 53 4.161001 GGACGGAGGGAGTAATTCTGTAAA 59.839 45.833 0.00 0.00 0.00 2.01
53 54 3.703052 GGACGGAGGGAGTAATTCTGTAA 59.297 47.826 0.00 0.00 0.00 2.41
54 55 3.053095 AGGACGGAGGGAGTAATTCTGTA 60.053 47.826 0.00 0.00 0.00 2.74
55 56 2.108970 GGACGGAGGGAGTAATTCTGT 58.891 52.381 0.00 0.00 0.00 3.41
56 57 2.389715 AGGACGGAGGGAGTAATTCTG 58.610 52.381 0.00 0.00 0.00 3.02
57 58 2.850695 AGGACGGAGGGAGTAATTCT 57.149 50.000 0.00 0.00 0.00 2.40
58 59 6.854091 ATTATAGGACGGAGGGAGTAATTC 57.146 41.667 0.00 0.00 0.00 2.17
60 61 9.643735 CTTATATTATAGGACGGAGGGAGTAAT 57.356 37.037 0.00 0.00 0.00 1.89
61 62 8.839745 TCTTATATTATAGGACGGAGGGAGTAA 58.160 37.037 0.00 0.00 0.00 2.24
62 63 8.397951 TCTTATATTATAGGACGGAGGGAGTA 57.602 38.462 0.00 0.00 0.00 2.59
63 64 7.281366 TCTTATATTATAGGACGGAGGGAGT 57.719 40.000 0.00 0.00 0.00 3.85
64 65 8.770010 AATCTTATATTATAGGACGGAGGGAG 57.230 38.462 0.00 0.00 0.00 4.30
65 66 8.341513 TGAATCTTATATTATAGGACGGAGGGA 58.658 37.037 0.00 0.00 0.00 4.20
66 67 8.534954 TGAATCTTATATTATAGGACGGAGGG 57.465 38.462 0.00 0.00 0.00 4.30
67 68 8.138712 GCTGAATCTTATATTATAGGACGGAGG 58.861 40.741 0.00 0.00 0.00 4.30
68 69 8.908903 AGCTGAATCTTATATTATAGGACGGAG 58.091 37.037 0.00 0.00 0.00 4.63
69 70 8.824756 AGCTGAATCTTATATTATAGGACGGA 57.175 34.615 0.00 0.00 0.00 4.69
70 71 9.307121 CAAGCTGAATCTTATATTATAGGACGG 57.693 37.037 0.00 0.00 0.00 4.79
72 73 9.658799 TGCAAGCTGAATCTTATATTATAGGAC 57.341 33.333 0.00 0.00 0.00 3.85
77 78 9.669353 CGTTTTGCAAGCTGAATCTTATATTAT 57.331 29.630 0.00 0.00 0.00 1.28
78 79 8.888716 TCGTTTTGCAAGCTGAATCTTATATTA 58.111 29.630 0.00 0.00 0.00 0.98
79 80 7.761409 TCGTTTTGCAAGCTGAATCTTATATT 58.239 30.769 0.00 0.00 0.00 1.28
80 81 7.320443 TCGTTTTGCAAGCTGAATCTTATAT 57.680 32.000 0.00 0.00 0.00 0.86
82 83 5.627499 TCGTTTTGCAAGCTGAATCTTAT 57.373 34.783 0.00 0.00 0.00 1.73
83 84 5.412594 AGATCGTTTTGCAAGCTGAATCTTA 59.587 36.000 0.00 0.00 0.00 2.10
84 85 3.988379 TCGTTTTGCAAGCTGAATCTT 57.012 38.095 0.00 0.00 0.00 2.40
86 87 4.088823 AGATCGTTTTGCAAGCTGAATC 57.911 40.909 0.00 1.40 0.00 2.52
87 88 4.510038 AAGATCGTTTTGCAAGCTGAAT 57.490 36.364 0.00 0.00 0.00 2.57
88 89 3.988379 AAGATCGTTTTGCAAGCTGAA 57.012 38.095 0.00 0.00 0.00 3.02
92 93 9.374960 CTTCTAATATAAGATCGTTTTGCAAGC 57.625 33.333 0.00 0.00 0.00 4.01
96 97 9.477484 TCCTCTTCTAATATAAGATCGTTTTGC 57.523 33.333 0.00 0.00 32.72 3.68
99 100 8.808092 CCCTCCTCTTCTAATATAAGATCGTTT 58.192 37.037 0.00 0.00 32.72 3.60
100 101 8.171400 TCCCTCCTCTTCTAATATAAGATCGTT 58.829 37.037 0.00 0.00 32.72 3.85
105 106 9.407957 TCTAGTCCCTCCTCTTCTAATATAAGA 57.592 37.037 0.00 0.00 0.00 2.10
106 107 9.457436 GTCTAGTCCCTCCTCTTCTAATATAAG 57.543 40.741 0.00 0.00 0.00 1.73
107 108 9.185007 AGTCTAGTCCCTCCTCTTCTAATATAA 57.815 37.037 0.00 0.00 0.00 0.98
108 109 8.607713 CAGTCTAGTCCCTCCTCTTCTAATATA 58.392 40.741 0.00 0.00 0.00 0.86
109 110 7.466804 CAGTCTAGTCCCTCCTCTTCTAATAT 58.533 42.308 0.00 0.00 0.00 1.28
110 111 6.692008 GCAGTCTAGTCCCTCCTCTTCTAATA 60.692 46.154 0.00 0.00 0.00 0.98
111 112 5.701224 CAGTCTAGTCCCTCCTCTTCTAAT 58.299 45.833 0.00 0.00 0.00 1.73
112 113 4.629204 GCAGTCTAGTCCCTCCTCTTCTAA 60.629 50.000 0.00 0.00 0.00 2.10
113 114 3.117813 GCAGTCTAGTCCCTCCTCTTCTA 60.118 52.174 0.00 0.00 0.00 2.10
114 115 2.357777 GCAGTCTAGTCCCTCCTCTTCT 60.358 54.545 0.00 0.00 0.00 2.85
116 117 1.359474 TGCAGTCTAGTCCCTCCTCTT 59.641 52.381 0.00 0.00 0.00 2.85
117 118 1.003646 TGCAGTCTAGTCCCTCCTCT 58.996 55.000 0.00 0.00 0.00 3.69
119 120 0.707616 ACTGCAGTCTAGTCCCTCCT 59.292 55.000 15.25 0.00 0.00 3.69
120 121 2.092321 TCTACTGCAGTCTAGTCCCTCC 60.092 54.545 25.56 0.00 0.00 4.30
122 123 2.847449 TCTCTACTGCAGTCTAGTCCCT 59.153 50.000 25.56 0.00 0.00 4.20
123 124 2.946990 GTCTCTACTGCAGTCTAGTCCC 59.053 54.545 25.56 10.30 0.00 4.46
124 125 2.610374 CGTCTCTACTGCAGTCTAGTCC 59.390 54.545 25.56 14.52 0.00 3.85
125 126 3.307782 GTCGTCTCTACTGCAGTCTAGTC 59.692 52.174 25.56 17.23 0.00 2.59
128 129 2.269172 CGTCGTCTCTACTGCAGTCTA 58.731 52.381 25.56 11.84 0.00 2.59
129 130 1.080298 CGTCGTCTCTACTGCAGTCT 58.920 55.000 25.56 1.44 0.00 3.24
130 131 0.797542 ACGTCGTCTCTACTGCAGTC 59.202 55.000 25.56 7.61 0.00 3.51
131 132 1.069159 CAACGTCGTCTCTACTGCAGT 60.069 52.381 25.12 25.12 0.00 4.40
133 134 0.386858 GCAACGTCGTCTCTACTGCA 60.387 55.000 11.53 0.00 0.00 4.41
135 136 3.017232 GGCAACGTCGTCTCTACTG 57.983 57.895 0.00 0.00 0.00 2.74
156 157 1.359168 ACTCTACCTGTTGGGGGTTC 58.641 55.000 0.00 0.00 40.03 3.62
157 158 1.829138 AACTCTACCTGTTGGGGGTT 58.171 50.000 0.00 0.00 40.03 4.11
159 160 2.500504 GAGTAACTCTACCTGTTGGGGG 59.499 54.545 0.00 0.00 40.03 5.40
160 161 3.195825 CAGAGTAACTCTACCTGTTGGGG 59.804 52.174 0.00 0.00 38.99 4.96
161 162 3.833070 ACAGAGTAACTCTACCTGTTGGG 59.167 47.826 2.93 0.00 38.99 4.12
162 163 4.767928 AGACAGAGTAACTCTACCTGTTGG 59.232 45.833 6.16 0.00 38.99 3.77
163 164 5.968528 AGACAGAGTAACTCTACCTGTTG 57.031 43.478 6.16 0.00 38.99 3.33
164 165 7.460071 TCTAAGACAGAGTAACTCTACCTGTT 58.540 38.462 6.16 0.00 38.99 3.16
165 166 7.018487 TCTAAGACAGAGTAACTCTACCTGT 57.982 40.000 5.38 5.38 38.99 4.00
166 167 7.548196 CTCTAAGACAGAGTAACTCTACCTG 57.452 44.000 0.00 2.34 45.10 4.00
181 182 1.068748 GGCAACGTCGTCTCTAAGACA 60.069 52.381 0.00 0.00 45.30 3.41
182 183 1.615502 GGCAACGTCGTCTCTAAGAC 58.384 55.000 0.00 0.00 41.71 3.01
196 197 1.182385 TTTGGTGGATTCCCGGCAAC 61.182 55.000 0.00 0.00 34.29 4.17
198 199 1.605165 GTTTGGTGGATTCCCGGCA 60.605 57.895 0.00 0.00 34.29 5.69
199 200 2.348104 GGTTTGGTGGATTCCCGGC 61.348 63.158 0.00 0.00 34.29 6.13
200 201 2.043980 CGGTTTGGTGGATTCCCGG 61.044 63.158 0.00 0.00 34.29 5.73
201 202 0.393808 ATCGGTTTGGTGGATTCCCG 60.394 55.000 0.00 0.00 36.83 5.14
202 203 1.064685 AGATCGGTTTGGTGGATTCCC 60.065 52.381 0.00 0.00 0.00 3.97
203 204 2.017049 CAGATCGGTTTGGTGGATTCC 58.983 52.381 0.00 0.00 0.00 3.01
206 207 3.433306 TTTCAGATCGGTTTGGTGGAT 57.567 42.857 0.00 0.00 0.00 3.41
207 208 2.940994 TTTCAGATCGGTTTGGTGGA 57.059 45.000 0.00 0.00 0.00 4.02
208 209 4.261801 AGTATTTCAGATCGGTTTGGTGG 58.738 43.478 0.00 0.00 0.00 4.61
209 210 5.178797 AGAGTATTTCAGATCGGTTTGGTG 58.821 41.667 0.00 0.00 0.00 4.17
210 211 5.422214 AGAGTATTTCAGATCGGTTTGGT 57.578 39.130 0.00 0.00 0.00 3.67
212 213 5.459107 CGGTAGAGTATTTCAGATCGGTTTG 59.541 44.000 0.00 0.00 0.00 2.93
214 215 4.499357 GCGGTAGAGTATTTCAGATCGGTT 60.499 45.833 0.00 0.00 0.00 4.44
215 216 3.004524 GCGGTAGAGTATTTCAGATCGGT 59.995 47.826 0.00 0.00 0.00 4.69
216 217 3.004419 TGCGGTAGAGTATTTCAGATCGG 59.996 47.826 0.00 0.00 0.00 4.18
217 218 3.975670 GTGCGGTAGAGTATTTCAGATCG 59.024 47.826 0.00 0.00 0.00 3.69
218 219 4.202121 TGGTGCGGTAGAGTATTTCAGATC 60.202 45.833 0.00 0.00 0.00 2.75
219 220 3.704566 TGGTGCGGTAGAGTATTTCAGAT 59.295 43.478 0.00 0.00 0.00 2.90
220 221 3.093814 TGGTGCGGTAGAGTATTTCAGA 58.906 45.455 0.00 0.00 0.00 3.27
221 222 3.520290 TGGTGCGGTAGAGTATTTCAG 57.480 47.619 0.00 0.00 0.00 3.02
222 223 3.965379 TTGGTGCGGTAGAGTATTTCA 57.035 42.857 0.00 0.00 0.00 2.69
223 224 3.002348 GCATTGGTGCGGTAGAGTATTTC 59.998 47.826 0.00 0.00 42.28 2.17
224 225 2.943033 GCATTGGTGCGGTAGAGTATTT 59.057 45.455 0.00 0.00 42.28 1.40
225 226 2.561569 GCATTGGTGCGGTAGAGTATT 58.438 47.619 0.00 0.00 42.28 1.89
226 227 2.240493 GCATTGGTGCGGTAGAGTAT 57.760 50.000 0.00 0.00 42.28 2.12
227 228 3.752796 GCATTGGTGCGGTAGAGTA 57.247 52.632 0.00 0.00 42.28 2.59
228 229 4.617875 GCATTGGTGCGGTAGAGT 57.382 55.556 0.00 0.00 42.28 3.24
237 238 3.266230 TTTCCGCGCTGCATTGGTG 62.266 57.895 5.56 0.00 0.00 4.17
238 239 2.983030 TTTCCGCGCTGCATTGGT 60.983 55.556 5.56 0.00 0.00 3.67
239 240 2.504681 GTTTCCGCGCTGCATTGG 60.505 61.111 5.56 0.00 0.00 3.16
240 241 0.733566 AATGTTTCCGCGCTGCATTG 60.734 50.000 5.56 0.00 0.00 2.82
241 242 0.038343 AAATGTTTCCGCGCTGCATT 60.038 45.000 5.56 5.61 0.00 3.56
242 243 0.733566 CAAATGTTTCCGCGCTGCAT 60.734 50.000 5.56 0.00 0.00 3.96
243 244 1.371512 CAAATGTTTCCGCGCTGCA 60.372 52.632 5.56 0.00 0.00 4.41
244 245 0.456653 ATCAAATGTTTCCGCGCTGC 60.457 50.000 5.56 0.00 0.00 5.25
245 246 1.650153 CAATCAAATGTTTCCGCGCTG 59.350 47.619 5.56 0.00 0.00 5.18
246 247 1.539388 TCAATCAAATGTTTCCGCGCT 59.461 42.857 5.56 0.00 0.00 5.92
247 248 1.913403 CTCAATCAAATGTTTCCGCGC 59.087 47.619 0.00 0.00 0.00 6.86
248 249 3.469899 TCTCAATCAAATGTTTCCGCG 57.530 42.857 0.00 0.00 0.00 6.46
249 250 4.618489 CAGTTCTCAATCAAATGTTTCCGC 59.382 41.667 0.00 0.00 0.00 5.54
251 252 6.421801 CCAACAGTTCTCAATCAAATGTTTCC 59.578 38.462 0.00 0.00 39.39 3.13
252 253 7.202526 TCCAACAGTTCTCAATCAAATGTTTC 58.797 34.615 0.00 0.00 39.39 2.78
253 254 7.111247 TCCAACAGTTCTCAATCAAATGTTT 57.889 32.000 0.00 0.00 39.39 2.83
254 255 6.713762 TCCAACAGTTCTCAATCAAATGTT 57.286 33.333 0.00 0.00 41.44 2.71
255 256 6.713762 TTCCAACAGTTCTCAATCAAATGT 57.286 33.333 0.00 0.00 33.63 2.71
256 257 7.168637 CACTTTCCAACAGTTCTCAATCAAATG 59.831 37.037 0.00 0.00 0.00 2.32
258 259 6.376864 TCACTTTCCAACAGTTCTCAATCAAA 59.623 34.615 0.00 0.00 0.00 2.69
259 260 5.885352 TCACTTTCCAACAGTTCTCAATCAA 59.115 36.000 0.00 0.00 0.00 2.57
260 261 5.296780 GTCACTTTCCAACAGTTCTCAATCA 59.703 40.000 0.00 0.00 0.00 2.57
261 262 5.559035 CGTCACTTTCCAACAGTTCTCAATC 60.559 44.000 0.00 0.00 0.00 2.67
263 264 3.621268 CGTCACTTTCCAACAGTTCTCAA 59.379 43.478 0.00 0.00 0.00 3.02
265 266 3.245519 GTCGTCACTTTCCAACAGTTCTC 59.754 47.826 0.00 0.00 0.00 2.87
266 267 3.195661 GTCGTCACTTTCCAACAGTTCT 58.804 45.455 0.00 0.00 0.00 3.01
267 268 2.933906 TGTCGTCACTTTCCAACAGTTC 59.066 45.455 0.00 0.00 0.00 3.01
269 270 2.093658 ACTGTCGTCACTTTCCAACAGT 60.094 45.455 0.37 0.37 41.70 3.55
271 272 2.093921 TCACTGTCGTCACTTTCCAACA 60.094 45.455 0.00 0.00 0.00 3.33
272 273 2.540101 CTCACTGTCGTCACTTTCCAAC 59.460 50.000 0.00 0.00 0.00 3.77
273 274 2.821546 CTCACTGTCGTCACTTTCCAA 58.178 47.619 0.00 0.00 0.00 3.53
274 275 1.538204 GCTCACTGTCGTCACTTTCCA 60.538 52.381 0.00 0.00 0.00 3.53
276 277 2.141535 AGCTCACTGTCGTCACTTTC 57.858 50.000 0.00 0.00 0.00 2.62
277 278 2.604046 AAGCTCACTGTCGTCACTTT 57.396 45.000 0.00 0.00 0.00 2.66
278 279 2.608261 GCTAAGCTCACTGTCGTCACTT 60.608 50.000 0.00 0.00 0.00 3.16
280 281 1.068194 AGCTAAGCTCACTGTCGTCAC 60.068 52.381 0.00 0.00 30.62 3.67
281 282 1.248486 AGCTAAGCTCACTGTCGTCA 58.752 50.000 0.00 0.00 30.62 4.35
282 283 2.355717 AAGCTAAGCTCACTGTCGTC 57.644 50.000 0.00 0.00 38.25 4.20
283 284 2.820787 ACTAAGCTAAGCTCACTGTCGT 59.179 45.455 0.00 0.00 38.25 4.34
284 285 3.495670 ACTAAGCTAAGCTCACTGTCG 57.504 47.619 0.00 0.00 38.25 4.35
285 286 8.192110 AGTATAAACTAAGCTAAGCTCACTGTC 58.808 37.037 0.00 0.00 38.25 3.51
288 289 7.342284 TGGAGTATAAACTAAGCTAAGCTCACT 59.658 37.037 0.00 0.00 34.87 3.41
289 290 7.490000 TGGAGTATAAACTAAGCTAAGCTCAC 58.510 38.462 0.00 0.00 34.87 3.51
290 291 7.342284 ACTGGAGTATAAACTAAGCTAAGCTCA 59.658 37.037 0.00 0.00 34.87 4.26
291 292 7.718525 ACTGGAGTATAAACTAAGCTAAGCTC 58.281 38.462 0.00 0.00 34.87 4.09
292 293 7.663043 ACTGGAGTATAAACTAAGCTAAGCT 57.337 36.000 0.00 0.00 36.80 3.74
293 294 8.604890 CAAACTGGAGTATAAACTAAGCTAAGC 58.395 37.037 0.00 0.00 35.56 3.09
294 295 9.099454 CCAAACTGGAGTATAAACTAAGCTAAG 57.901 37.037 0.00 0.00 40.96 2.18
295 296 8.818860 TCCAAACTGGAGTATAAACTAAGCTAA 58.181 33.333 0.00 0.00 42.67 3.09
311 312 4.680708 GCAGATTCGTATCTCCAAACTGGA 60.681 45.833 0.97 0.00 45.98 3.86
313 314 4.269603 CAGCAGATTCGTATCTCCAAACTG 59.730 45.833 0.97 2.32 39.11 3.16
315 316 3.001736 GCAGCAGATTCGTATCTCCAAAC 59.998 47.826 0.97 0.00 39.11 2.93
317 318 2.483714 GGCAGCAGATTCGTATCTCCAA 60.484 50.000 0.97 0.00 39.11 3.53
354 355 3.134081 ACTTCTACTCTCCTCTCCTCGAG 59.866 52.174 5.13 5.13 39.57 4.04
356 357 3.134081 AGACTTCTACTCTCCTCTCCTCG 59.866 52.174 0.00 0.00 0.00 4.63
357 358 4.704965 GAGACTTCTACTCTCCTCTCCTC 58.295 52.174 0.00 0.00 0.00 3.71
365 366 4.196971 GAGTGAGGGAGACTTCTACTCTC 58.803 52.174 10.24 0.00 39.34 3.20
368 369 3.308832 CCTGAGTGAGGGAGACTTCTACT 60.309 52.174 0.00 0.00 38.36 2.57
369 370 3.020984 CCTGAGTGAGGGAGACTTCTAC 58.979 54.545 0.00 0.00 38.36 2.59
371 372 2.230130 CCTGAGTGAGGGAGACTTCT 57.770 55.000 0.00 0.00 38.36 2.85
381 382 3.009723 GAGTGAGAGAGACCTGAGTGAG 58.990 54.545 0.00 0.00 0.00 3.51
399 407 9.793259 TTATTCTCCAACAAATTAACAGAGAGT 57.207 29.630 0.00 0.00 31.11 3.24
428 436 8.071977 CCTATCGAGGCAAAGGATATACTCCTA 61.072 44.444 0.00 0.00 44.72 2.94
430 438 4.810191 ATCGAGGCAAAGGATATACTCC 57.190 45.455 0.00 0.00 45.33 3.85
431 439 5.897050 CCTATCGAGGCAAAGGATATACTC 58.103 45.833 0.00 0.00 35.54 2.59
432 440 5.923733 CCTATCGAGGCAAAGGATATACT 57.076 43.478 0.00 0.00 35.54 2.12
445 453 4.116238 GAGAGAAACAAAGCCTATCGAGG 58.884 47.826 0.00 0.00 46.93 4.63
446 454 4.748892 TGAGAGAAACAAAGCCTATCGAG 58.251 43.478 0.00 0.00 0.00 4.04
447 455 4.801330 TGAGAGAAACAAAGCCTATCGA 57.199 40.909 0.00 0.00 0.00 3.59
448 456 4.331168 CCTTGAGAGAAACAAAGCCTATCG 59.669 45.833 0.00 0.00 0.00 2.92
449 457 5.491982 TCCTTGAGAGAAACAAAGCCTATC 58.508 41.667 0.00 0.00 0.00 2.08
450 458 5.505181 TCCTTGAGAGAAACAAAGCCTAT 57.495 39.130 0.00 0.00 0.00 2.57
459 467 2.480802 GCTCCGTTTCCTTGAGAGAAAC 59.519 50.000 6.36 6.36 46.20 2.78
460 468 2.104111 TGCTCCGTTTCCTTGAGAGAAA 59.896 45.455 0.00 0.00 0.00 2.52
463 471 2.169832 TTGCTCCGTTTCCTTGAGAG 57.830 50.000 0.00 0.00 0.00 3.20
467 475 2.357637 TCAAGTTTGCTCCGTTTCCTTG 59.642 45.455 0.00 0.00 0.00 3.61
468 476 2.618709 CTCAAGTTTGCTCCGTTTCCTT 59.381 45.455 0.00 0.00 0.00 3.36
470 478 1.335051 GCTCAAGTTTGCTCCGTTTCC 60.335 52.381 0.00 0.00 0.00 3.13
471 479 1.604278 AGCTCAAGTTTGCTCCGTTTC 59.396 47.619 0.00 0.00 33.90 2.78
473 481 1.604278 GAAGCTCAAGTTTGCTCCGTT 59.396 47.619 0.00 0.00 38.75 4.44
475 483 0.164647 CGAAGCTCAAGTTTGCTCCG 59.835 55.000 0.00 0.00 38.75 4.63
490 498 2.049156 TGTCTGTGCCGAGCGAAG 60.049 61.111 0.00 0.00 0.00 3.79
491 499 2.049156 CTGTCTGTGCCGAGCGAA 60.049 61.111 0.00 0.00 0.00 4.70
492 500 2.561037 TTCTGTCTGTGCCGAGCGA 61.561 57.895 0.00 0.00 0.00 4.93
493 501 2.049156 TTCTGTCTGTGCCGAGCG 60.049 61.111 0.00 0.00 0.00 5.03
494 502 0.243907 TAGTTCTGTCTGTGCCGAGC 59.756 55.000 0.00 0.00 0.00 5.03
495 503 2.534298 CATAGTTCTGTCTGTGCCGAG 58.466 52.381 0.00 0.00 0.00 4.63
496 504 1.404181 GCATAGTTCTGTCTGTGCCGA 60.404 52.381 10.86 0.00 43.41 5.54
497 505 1.002366 GCATAGTTCTGTCTGTGCCG 58.998 55.000 10.86 0.00 43.41 5.69
501 509 3.407424 TGCAAGCATAGTTCTGTCTGT 57.593 42.857 0.00 0.00 0.00 3.41
502 510 6.615264 AATATGCAAGCATAGTTCTGTCTG 57.385 37.500 18.40 0.00 41.51 3.51
503 511 7.042456 CGTAAATATGCAAGCATAGTTCTGTCT 60.042 37.037 25.13 8.63 43.29 3.41
504 512 7.042725 TCGTAAATATGCAAGCATAGTTCTGTC 60.043 37.037 25.13 15.37 43.29 3.51
505 513 6.761242 TCGTAAATATGCAAGCATAGTTCTGT 59.239 34.615 25.13 9.54 43.29 3.41
506 514 7.169813 TCTCGTAAATATGCAAGCATAGTTCTG 59.830 37.037 25.13 19.41 43.29 3.02
508 516 7.284351 GTCTCGTAAATATGCAAGCATAGTTC 58.716 38.462 25.13 17.22 43.29 3.01
509 517 6.202954 GGTCTCGTAAATATGCAAGCATAGTT 59.797 38.462 24.87 24.87 45.30 2.24
510 518 5.696724 GGTCTCGTAAATATGCAAGCATAGT 59.303 40.000 18.40 13.97 41.51 2.12
511 519 5.928839 AGGTCTCGTAAATATGCAAGCATAG 59.071 40.000 18.40 6.64 41.51 2.23
512 520 5.853936 AGGTCTCGTAAATATGCAAGCATA 58.146 37.500 16.24 16.24 42.28 3.14
513 521 4.708177 AGGTCTCGTAAATATGCAAGCAT 58.292 39.130 12.66 12.66 40.19 3.79
515 523 4.119862 TGAGGTCTCGTAAATATGCAAGC 58.880 43.478 0.00 0.00 0.00 4.01
516 524 6.313905 ACTTTGAGGTCTCGTAAATATGCAAG 59.686 38.462 0.00 0.00 0.00 4.01
517 525 6.170506 ACTTTGAGGTCTCGTAAATATGCAA 58.829 36.000 0.00 0.00 0.00 4.08
521 529 6.540438 TGGACTTTGAGGTCTCGTAAATAT 57.460 37.500 0.00 0.00 36.55 1.28
522 530 5.988310 TGGACTTTGAGGTCTCGTAAATA 57.012 39.130 0.00 0.00 36.55 1.40
523 531 4.884668 TGGACTTTGAGGTCTCGTAAAT 57.115 40.909 0.00 0.00 36.55 1.40
524 532 4.628074 CTTGGACTTTGAGGTCTCGTAAA 58.372 43.478 0.00 0.00 36.55 2.01
525 533 3.554337 GCTTGGACTTTGAGGTCTCGTAA 60.554 47.826 0.00 0.00 36.55 3.18
526 534 2.029290 GCTTGGACTTTGAGGTCTCGTA 60.029 50.000 0.00 0.00 36.55 3.43
527 535 1.270358 GCTTGGACTTTGAGGTCTCGT 60.270 52.381 0.00 0.00 36.55 4.18
528 536 1.270305 TGCTTGGACTTTGAGGTCTCG 60.270 52.381 0.00 0.00 36.55 4.04
529 537 2.550830 TGCTTGGACTTTGAGGTCTC 57.449 50.000 0.00 0.00 36.55 3.36
530 538 2.439507 TCTTGCTTGGACTTTGAGGTCT 59.560 45.455 0.00 0.00 36.55 3.85
531 539 2.810852 CTCTTGCTTGGACTTTGAGGTC 59.189 50.000 0.00 0.00 35.66 3.85
533 541 3.131709 TCTCTTGCTTGGACTTTGAGG 57.868 47.619 0.00 0.00 0.00 3.86
534 542 4.153835 GTGATCTCTTGCTTGGACTTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
535 543 4.067896 GTGATCTCTTGCTTGGACTTTGA 58.932 43.478 0.00 0.00 0.00 2.69
536 544 3.817084 TGTGATCTCTTGCTTGGACTTTG 59.183 43.478 0.00 0.00 0.00 2.77
538 546 3.072184 ACTGTGATCTCTTGCTTGGACTT 59.928 43.478 0.00 0.00 0.00 3.01
539 547 2.636893 ACTGTGATCTCTTGCTTGGACT 59.363 45.455 0.00 0.00 0.00 3.85
540 548 2.999355 GACTGTGATCTCTTGCTTGGAC 59.001 50.000 0.00 0.00 0.00 4.02
541 549 2.902486 AGACTGTGATCTCTTGCTTGGA 59.098 45.455 0.00 0.00 0.00 3.53
542 550 3.001414 CAGACTGTGATCTCTTGCTTGG 58.999 50.000 0.00 0.00 0.00 3.61
544 552 3.617045 GCTCAGACTGTGATCTCTTGCTT 60.617 47.826 8.69 0.00 33.51 3.91
546 554 2.270047 GCTCAGACTGTGATCTCTTGC 58.730 52.381 8.69 0.00 33.51 4.01
548 556 2.896044 TGTGCTCAGACTGTGATCTCTT 59.104 45.455 8.69 0.00 33.51 2.85
549 557 2.230992 GTGTGCTCAGACTGTGATCTCT 59.769 50.000 8.69 0.00 33.51 3.10
550 558 2.605030 GTGTGCTCAGACTGTGATCTC 58.395 52.381 8.69 0.00 33.51 2.75
552 560 1.068264 TCGTGTGCTCAGACTGTGATC 60.068 52.381 8.69 1.49 33.51 2.92
553 561 0.961753 TCGTGTGCTCAGACTGTGAT 59.038 50.000 8.69 0.00 33.51 3.06
554 562 0.961753 ATCGTGTGCTCAGACTGTGA 59.038 50.000 8.69 0.00 0.00 3.58
567 575 5.131067 TCTACTAATGGACTAGCATCGTGT 58.869 41.667 0.00 0.00 0.00 4.49
575 583 5.304871 GGGGTTCCTTCTACTAATGGACTAG 59.695 48.000 0.00 0.00 0.00 2.57
625 633 2.289882 TGTCCTGAGCTCAACTGATTGG 60.290 50.000 18.85 13.40 36.39 3.16
635 643 2.479566 TTCCATGTTGTCCTGAGCTC 57.520 50.000 6.82 6.82 0.00 4.09
638 646 5.909621 ATTCATTTCCATGTTGTCCTGAG 57.090 39.130 0.00 0.00 0.00 3.35
644 652 9.480053 CTGACTTTTTATTCATTTCCATGTTGT 57.520 29.630 0.00 0.00 0.00 3.32
660 672 4.067896 CAGGAGAGCAAGCTGACTTTTTA 58.932 43.478 0.00 0.00 32.29 1.52
717 729 4.274950 AGCAGCGCGTAATATTAATTTGGT 59.725 37.500 8.43 0.00 0.00 3.67
736 748 1.372128 GCCCGTTTCTTGCAAGCAG 60.372 57.895 21.99 11.63 0.00 4.24
758 770 0.729116 CACGACACAATCCAGGCATC 59.271 55.000 0.00 0.00 0.00 3.91
783 819 4.340950 ACGTTTGTCCATTTGATTGAGGTT 59.659 37.500 0.00 0.00 0.00 3.50
787 823 3.067320 TGCACGTTTGTCCATTTGATTGA 59.933 39.130 0.00 0.00 0.00 2.57
789 825 3.317711 TCTGCACGTTTGTCCATTTGATT 59.682 39.130 0.00 0.00 0.00 2.57
790 826 2.884012 TCTGCACGTTTGTCCATTTGAT 59.116 40.909 0.00 0.00 0.00 2.57
868 918 3.099362 GTGTAGCGTAGAATGACGTGAG 58.901 50.000 0.00 0.00 44.74 3.51
873 923 3.512680 AGCAAGTGTAGCGTAGAATGAC 58.487 45.455 0.00 0.00 37.01 3.06
883 933 5.784177 TGGCTATATAGAAGCAAGTGTAGC 58.216 41.667 14.16 0.00 41.93 3.58
887 937 5.303971 AGCTTGGCTATATAGAAGCAAGTG 58.696 41.667 26.10 5.50 42.71 3.16
906 956 0.461339 CACCGGCGTACCAATAGCTT 60.461 55.000 6.01 0.00 34.57 3.74
909 959 1.134753 TGTACACCGGCGTACCAATAG 59.865 52.381 25.84 0.00 40.91 1.73
939 999 7.093289 TGAAGTATTCTTAGGAAGTTCCTGAGG 60.093 40.741 32.45 22.04 46.79 3.86
969 1029 6.264292 ACTCGATGCAGTATTCTCAAGACTAT 59.736 38.462 0.00 0.00 30.54 2.12
973 1033 4.158579 ACACTCGATGCAGTATTCTCAAGA 59.841 41.667 0.00 0.00 0.00 3.02
976 1036 3.443681 TGACACTCGATGCAGTATTCTCA 59.556 43.478 0.00 0.00 0.00 3.27
977 1037 4.033990 TGACACTCGATGCAGTATTCTC 57.966 45.455 0.00 0.00 0.00 2.87
979 1039 5.496387 CATTTGACACTCGATGCAGTATTC 58.504 41.667 0.00 0.00 0.00 1.75
980 1040 4.333649 CCATTTGACACTCGATGCAGTATT 59.666 41.667 0.00 0.00 0.00 1.89
981 1041 3.873361 CCATTTGACACTCGATGCAGTAT 59.127 43.478 0.00 0.00 0.00 2.12
982 1042 3.056179 TCCATTTGACACTCGATGCAGTA 60.056 43.478 0.00 0.00 0.00 2.74
983 1043 2.079158 CCATTTGACACTCGATGCAGT 58.921 47.619 0.00 0.00 0.00 4.40
984 1044 2.349590 TCCATTTGACACTCGATGCAG 58.650 47.619 0.00 0.00 0.00 4.41
985 1045 2.470983 TCCATTTGACACTCGATGCA 57.529 45.000 0.00 0.00 0.00 3.96
986 1046 2.476854 GCTTCCATTTGACACTCGATGC 60.477 50.000 0.00 0.00 0.00 3.91
987 1047 2.743664 TGCTTCCATTTGACACTCGATG 59.256 45.455 0.00 0.00 0.00 3.84
989 1049 2.416747 CTGCTTCCATTTGACACTCGA 58.583 47.619 0.00 0.00 0.00 4.04
1051 1120 0.322975 AGGATCACCTGTGTCTGTGC 59.677 55.000 0.00 0.00 45.92 4.57
1069 1164 5.984233 TTTTAGCATTATACAGCACGGAG 57.016 39.130 0.00 0.00 0.00 4.63
1093 1204 7.868922 GCTATGCATCACATATGGAAATTCAAA 59.131 33.333 0.19 0.00 40.48 2.69
1112 1223 1.819208 GCGGTCCACATGCTATGCA 60.819 57.895 0.00 0.00 44.86 3.96
1127 1238 1.875963 GTCCTGAACACCAATGCGG 59.124 57.895 0.00 0.00 42.50 5.69
1128 1239 0.948623 TCGTCCTGAACACCAATGCG 60.949 55.000 0.00 0.00 0.00 4.73
1157 1293 5.795972 TCAACCGTTCCATCACTTGTATAA 58.204 37.500 0.00 0.00 0.00 0.98
1281 1426 4.755266 TCTGTAGGGAAAATGTAGAGCC 57.245 45.455 0.00 0.00 0.00 4.70
1318 1475 1.948611 GCCTGATTTACGTCCAAGGCA 60.949 52.381 17.72 4.88 40.57 4.75
1328 1485 1.668751 TGAATTCGGCGCCTGATTTAC 59.331 47.619 26.68 16.86 0.00 2.01
1598 1831 5.786574 GTCAATGAAAATTTGCAGAAATGCG 59.213 36.000 4.87 0.00 37.69 4.73
1671 1913 3.630148 CGCCGCCGATGATGTCAC 61.630 66.667 0.00 0.00 36.29 3.67
1919 2161 0.464373 CCTGCACCCATACGAGCAAT 60.464 55.000 0.00 0.00 36.44 3.56
1946 2188 2.605295 AACCCGACGGTCCATCCA 60.605 61.111 13.94 0.00 43.71 3.41
1949 2191 3.766691 CCGAACCCGACGGTCCAT 61.767 66.667 13.94 0.00 43.71 3.41
2035 2280 3.528370 CTCCCCGTCCTAGTGGCG 61.528 72.222 0.00 0.00 34.36 5.69
2061 2306 2.592993 CCTGGAAGACCCTCGCCAA 61.593 63.158 0.00 0.00 34.07 4.52
2161 2406 2.680577 AGAACGTGAATTGACCGGTAC 58.319 47.619 7.34 0.00 0.00 3.34
2327 2572 0.885879 TAAGCGTGGACGACATCTGT 59.114 50.000 2.73 0.00 43.02 3.41
2561 4369 1.724623 GTCTCAATCAACGCAGCGTAA 59.275 47.619 23.30 13.36 39.99 3.18
2975 4789 6.330278 TGTTCAAGTACGATCGATGAAAGAT 58.670 36.000 24.34 0.00 32.36 2.40
2981 4795 6.575083 ATTCTTGTTCAAGTACGATCGATG 57.425 37.500 24.34 14.37 0.00 3.84
2984 4798 7.895870 ACAATATTCTTGTTCAAGTACGATCG 58.104 34.615 14.88 14.88 0.00 3.69
2996 4810 6.433093 AGCTAAACGGGAACAATATTCTTGTT 59.567 34.615 3.17 3.17 44.43 2.83
2997 4811 5.944007 AGCTAAACGGGAACAATATTCTTGT 59.056 36.000 0.00 0.00 0.00 3.16
2998 4812 6.436843 AGCTAAACGGGAACAATATTCTTG 57.563 37.500 0.00 0.00 0.00 3.02
2999 4813 6.884836 AGAAGCTAAACGGGAACAATATTCTT 59.115 34.615 0.00 0.00 0.00 2.52
3000 4814 6.415573 AGAAGCTAAACGGGAACAATATTCT 58.584 36.000 0.00 0.00 0.00 2.40
3001 4815 6.679327 AGAAGCTAAACGGGAACAATATTC 57.321 37.500 0.00 0.00 0.00 1.75
3002 4816 6.127730 CCAAGAAGCTAAACGGGAACAATATT 60.128 38.462 0.00 0.00 0.00 1.28
3003 4817 5.357032 CCAAGAAGCTAAACGGGAACAATAT 59.643 40.000 0.00 0.00 0.00 1.28
3004 4818 4.698304 CCAAGAAGCTAAACGGGAACAATA 59.302 41.667 0.00 0.00 0.00 1.90
3005 4819 3.506067 CCAAGAAGCTAAACGGGAACAAT 59.494 43.478 0.00 0.00 0.00 2.71
3006 4820 2.882137 CCAAGAAGCTAAACGGGAACAA 59.118 45.455 0.00 0.00 0.00 2.83
3007 4821 2.500229 CCAAGAAGCTAAACGGGAACA 58.500 47.619 0.00 0.00 0.00 3.18
3008 4822 1.199327 GCCAAGAAGCTAAACGGGAAC 59.801 52.381 0.00 0.00 0.00 3.62
3009 4823 1.530323 GCCAAGAAGCTAAACGGGAA 58.470 50.000 0.00 0.00 0.00 3.97
3010 4824 0.672401 CGCCAAGAAGCTAAACGGGA 60.672 55.000 0.00 0.00 0.00 5.14
3011 4825 0.672401 TCGCCAAGAAGCTAAACGGG 60.672 55.000 0.00 0.00 0.00 5.28
3012 4826 0.442699 GTCGCCAAGAAGCTAAACGG 59.557 55.000 0.00 0.00 0.00 4.44
3013 4827 0.093026 CGTCGCCAAGAAGCTAAACG 59.907 55.000 0.00 0.00 0.00 3.60
3014 4828 1.145803 ACGTCGCCAAGAAGCTAAAC 58.854 50.000 0.00 0.00 0.00 2.01
3015 4829 2.728690 TACGTCGCCAAGAAGCTAAA 57.271 45.000 0.00 0.00 0.00 1.85
3016 4830 2.164827 TCATACGTCGCCAAGAAGCTAA 59.835 45.455 0.00 0.00 0.00 3.09
3017 4831 1.746787 TCATACGTCGCCAAGAAGCTA 59.253 47.619 0.00 0.00 0.00 3.32
3018 4832 0.530744 TCATACGTCGCCAAGAAGCT 59.469 50.000 0.00 0.00 0.00 3.74
3019 4833 1.324736 CTTCATACGTCGCCAAGAAGC 59.675 52.381 0.00 0.00 0.00 3.86
3020 4834 2.607187 ACTTCATACGTCGCCAAGAAG 58.393 47.619 12.74 12.74 38.64 2.85
3021 4835 2.736144 ACTTCATACGTCGCCAAGAA 57.264 45.000 0.00 0.00 0.00 2.52
3022 4836 2.736144 AACTTCATACGTCGCCAAGA 57.264 45.000 0.00 0.00 0.00 3.02
3023 4837 3.806316 AAAACTTCATACGTCGCCAAG 57.194 42.857 0.00 0.00 0.00 3.61
3047 4861 1.868498 ACGTCGCCGATCTTTCAAAAA 59.132 42.857 0.00 0.00 37.88 1.94
3048 4862 1.504359 ACGTCGCCGATCTTTCAAAA 58.496 45.000 0.00 0.00 37.88 2.44
3049 4863 2.350899 TACGTCGCCGATCTTTCAAA 57.649 45.000 0.00 0.00 37.88 2.69
3050 4864 2.159352 TGATACGTCGCCGATCTTTCAA 60.159 45.455 0.00 0.00 37.88 2.69
3051 4865 1.402613 TGATACGTCGCCGATCTTTCA 59.597 47.619 0.00 0.00 37.88 2.69
3052 4866 2.115348 TGATACGTCGCCGATCTTTC 57.885 50.000 0.00 0.00 37.88 2.62
3053 4867 2.159282 ACTTGATACGTCGCCGATCTTT 60.159 45.455 0.00 0.00 37.88 2.52
3054 4868 1.404391 ACTTGATACGTCGCCGATCTT 59.596 47.619 0.00 0.00 37.88 2.40
3055 4869 1.022735 ACTTGATACGTCGCCGATCT 58.977 50.000 0.00 0.00 37.88 2.75
3056 4870 1.121240 CACTTGATACGTCGCCGATC 58.879 55.000 0.00 0.00 37.88 3.69
3057 4871 0.736636 TCACTTGATACGTCGCCGAT 59.263 50.000 0.00 0.00 37.88 4.18
3058 4872 0.522626 TTCACTTGATACGTCGCCGA 59.477 50.000 0.00 0.00 37.88 5.54
3059 4873 1.342555 TTTCACTTGATACGTCGCCG 58.657 50.000 0.00 0.00 40.83 6.46
3060 4874 3.485216 CCATTTTCACTTGATACGTCGCC 60.485 47.826 0.00 0.00 0.00 5.54
3061 4875 3.369756 TCCATTTTCACTTGATACGTCGC 59.630 43.478 0.00 0.00 0.00 5.19
3062 4876 5.718649 ATCCATTTTCACTTGATACGTCG 57.281 39.130 0.00 0.00 0.00 5.12
3063 4877 7.526608 TGAAATCCATTTTCACTTGATACGTC 58.473 34.615 0.00 0.00 46.80 4.34
3064 4878 7.174946 ACTGAAATCCATTTTCACTTGATACGT 59.825 33.333 0.00 0.00 46.80 3.57
3065 4879 7.482743 CACTGAAATCCATTTTCACTTGATACG 59.517 37.037 0.00 0.00 46.80 3.06
3066 4880 7.274250 GCACTGAAATCCATTTTCACTTGATAC 59.726 37.037 0.00 0.00 46.80 2.24
3067 4881 7.039853 TGCACTGAAATCCATTTTCACTTGATA 60.040 33.333 0.00 0.00 46.80 2.15
3068 4882 6.161381 GCACTGAAATCCATTTTCACTTGAT 58.839 36.000 0.00 0.00 46.80 2.57
3069 4883 5.068855 TGCACTGAAATCCATTTTCACTTGA 59.931 36.000 0.00 0.00 46.80 3.02
3070 4884 5.291178 TGCACTGAAATCCATTTTCACTTG 58.709 37.500 0.00 0.32 46.80 3.16
3071 4885 5.534207 TGCACTGAAATCCATTTTCACTT 57.466 34.783 0.00 0.00 46.80 3.16
3072 4886 5.534207 TTGCACTGAAATCCATTTTCACT 57.466 34.783 0.00 0.00 46.80 3.41
3073 4887 5.754890 AGTTTGCACTGAAATCCATTTTCAC 59.245 36.000 0.00 0.00 46.80 3.18
3075 4889 6.479660 TGAAGTTTGCACTGAAATCCATTTTC 59.520 34.615 0.00 0.00 43.42 2.29
3076 4890 6.347696 TGAAGTTTGCACTGAAATCCATTTT 58.652 32.000 0.00 0.00 31.60 1.82
3077 4891 5.916318 TGAAGTTTGCACTGAAATCCATTT 58.084 33.333 0.00 0.00 31.60 2.32
3078 4892 5.534207 TGAAGTTTGCACTGAAATCCATT 57.466 34.783 0.00 0.00 31.60 3.16
3079 4893 5.534207 TTGAAGTTTGCACTGAAATCCAT 57.466 34.783 0.00 0.00 31.60 3.41
3080 4894 4.998671 TTGAAGTTTGCACTGAAATCCA 57.001 36.364 0.00 0.00 31.60 3.41
3081 4895 8.538409 AATATTTGAAGTTTGCACTGAAATCC 57.462 30.769 0.00 0.00 32.15 3.01
3094 4908 9.578439 GCATCTAGAAGCAAAATATTTGAAGTT 57.422 29.630 14.86 0.00 0.00 2.66
3095 4909 8.964772 AGCATCTAGAAGCAAAATATTTGAAGT 58.035 29.630 21.11 0.00 0.00 3.01
3096 4910 9.234384 CAGCATCTAGAAGCAAAATATTTGAAG 57.766 33.333 21.11 0.00 0.00 3.02
3097 4911 8.192774 CCAGCATCTAGAAGCAAAATATTTGAA 58.807 33.333 21.11 0.00 0.00 2.69
3098 4912 7.557358 TCCAGCATCTAGAAGCAAAATATTTGA 59.443 33.333 21.11 0.00 0.00 2.69
3099 4913 7.646922 GTCCAGCATCTAGAAGCAAAATATTTG 59.353 37.037 21.11 8.35 0.00 2.32
3100 4914 7.559170 AGTCCAGCATCTAGAAGCAAAATATTT 59.441 33.333 21.11 0.00 0.00 1.40
3101 4915 7.059156 AGTCCAGCATCTAGAAGCAAAATATT 58.941 34.615 21.11 0.00 0.00 1.28
3102 4916 6.599445 AGTCCAGCATCTAGAAGCAAAATAT 58.401 36.000 21.11 0.00 0.00 1.28
3103 4917 5.994250 AGTCCAGCATCTAGAAGCAAAATA 58.006 37.500 21.11 0.31 0.00 1.40
3104 4918 4.853007 AGTCCAGCATCTAGAAGCAAAAT 58.147 39.130 21.11 3.46 0.00 1.82
3105 4919 4.019860 AGAGTCCAGCATCTAGAAGCAAAA 60.020 41.667 21.11 3.72 0.00 2.44
3106 4920 3.517100 AGAGTCCAGCATCTAGAAGCAAA 59.483 43.478 21.11 4.06 0.00 3.68
3107 4921 3.102972 AGAGTCCAGCATCTAGAAGCAA 58.897 45.455 21.11 4.40 0.00 3.91
3108 4922 2.744760 AGAGTCCAGCATCTAGAAGCA 58.255 47.619 21.11 0.00 0.00 3.91
3109 4923 4.141287 TCTAGAGTCCAGCATCTAGAAGC 58.859 47.826 12.00 12.00 46.88 3.86
3113 4927 4.406456 ACCATCTAGAGTCCAGCATCTAG 58.594 47.826 0.00 3.37 44.22 2.43
3114 4928 4.402829 GACCATCTAGAGTCCAGCATCTA 58.597 47.826 0.00 0.00 0.00 1.98
3115 4929 3.230134 GACCATCTAGAGTCCAGCATCT 58.770 50.000 0.00 0.00 0.00 2.90
3116 4930 3.658757 GACCATCTAGAGTCCAGCATC 57.341 52.381 0.00 0.00 0.00 3.91
3123 4937 3.357203 TCACTGTGGACCATCTAGAGTC 58.643 50.000 8.11 0.86 29.23 3.36
3124 4938 3.458044 TCACTGTGGACCATCTAGAGT 57.542 47.619 8.11 0.00 31.81 3.24
3125 4939 5.350504 AAATCACTGTGGACCATCTAGAG 57.649 43.478 8.11 0.00 0.00 2.43
3126 4940 5.013079 ACAAAATCACTGTGGACCATCTAGA 59.987 40.000 8.11 0.00 0.00 2.43
3127 4941 5.248640 ACAAAATCACTGTGGACCATCTAG 58.751 41.667 8.11 0.00 0.00 2.43
3128 4942 5.241403 ACAAAATCACTGTGGACCATCTA 57.759 39.130 8.11 0.00 0.00 1.98
3129 4943 4.104383 ACAAAATCACTGTGGACCATCT 57.896 40.909 8.11 0.00 0.00 2.90
3130 4944 4.853924 AACAAAATCACTGTGGACCATC 57.146 40.909 8.11 0.00 0.00 3.51
3131 4945 5.630121 TCTAACAAAATCACTGTGGACCAT 58.370 37.500 8.11 0.00 0.00 3.55
3132 4946 5.042463 TCTAACAAAATCACTGTGGACCA 57.958 39.130 8.11 0.00 0.00 4.02
3133 4947 6.575162 ATTCTAACAAAATCACTGTGGACC 57.425 37.500 8.11 0.00 0.00 4.46
3136 4950 9.573133 GGATTTATTCTAACAAAATCACTGTGG 57.427 33.333 8.11 0.00 40.02 4.17
3137 4951 9.277565 CGGATTTATTCTAACAAAATCACTGTG 57.722 33.333 0.17 0.17 40.02 3.66
3138 4952 9.226606 TCGGATTTATTCTAACAAAATCACTGT 57.773 29.630 8.71 0.00 40.02 3.55
3139 4953 9.708222 CTCGGATTTATTCTAACAAAATCACTG 57.292 33.333 8.71 0.40 40.02 3.66
3140 4954 9.667107 TCTCGGATTTATTCTAACAAAATCACT 57.333 29.630 8.71 0.00 40.02 3.41
3141 4955 9.704098 GTCTCGGATTTATTCTAACAAAATCAC 57.296 33.333 8.71 0.00 40.02 3.06
3142 4956 9.443323 TGTCTCGGATTTATTCTAACAAAATCA 57.557 29.630 8.71 0.00 40.02 2.57
3166 4980 2.420372 CCTCGGATGATCGACGATATGT 59.580 50.000 10.97 0.00 35.93 2.29
3171 4985 1.496403 CGTCCTCGGATGATCGACGA 61.496 60.000 13.01 0.00 43.80 4.20
3212 5026 4.081420 GGAGATGTAGCCATATCGGTGAAT 60.081 45.833 0.00 0.00 39.66 2.57
3249 5063 3.390521 TCACGGGAAGGAGCGCAT 61.391 61.111 11.47 0.00 0.00 4.73
3250 5064 4.373116 GTCACGGGAAGGAGCGCA 62.373 66.667 11.47 0.00 0.00 6.09
3314 5130 3.011517 ACGCAAGGGGGAGCTGAT 61.012 61.111 0.00 0.00 46.39 2.90
3315 5131 4.020617 CACGCAAGGGGGAGCTGA 62.021 66.667 0.00 0.00 46.39 4.26
3354 7411 3.181479 GGGCTAGACACACGATGTAATCA 60.181 47.826 0.00 0.00 45.97 2.57
3447 7504 4.411212 AGGTAGGTTACAGTTGGACTTGTT 59.589 41.667 0.00 0.00 0.00 2.83
3498 7561 7.027874 AGAATATTCACCAAGGTGGAGTTTA 57.972 36.000 18.51 0.86 45.43 2.01
3513 7576 6.126863 ACTCAAAGTGGTGGAGAATATTCA 57.873 37.500 17.56 0.00 33.00 2.57
3530 7593 4.827304 TTGATGCATTGACGAACTCAAA 57.173 36.364 0.00 0.00 42.37 2.69
3627 7690 7.610305 TCAAGAAAAGAAAGGACTACAAGTTGT 59.390 33.333 14.05 14.05 0.00 3.32
3641 7704 6.479660 GCATTGATTGTGGTCAAGAAAAGAAA 59.520 34.615 0.00 0.00 41.05 2.52
3680 7743 5.865013 GCACAGACTAGAGTAAAGAGAAACC 59.135 44.000 0.00 0.00 0.00 3.27
3684 7747 4.944930 GGAGCACAGACTAGAGTAAAGAGA 59.055 45.833 0.00 0.00 0.00 3.10
3783 7846 6.071560 TCAGGTAATTCTTACGTGTGACATCT 60.072 38.462 15.36 0.00 46.53 2.90
3852 7915 3.886505 ACAAGCAACGGTGAAATTCCTAA 59.113 39.130 3.55 0.00 0.00 2.69
3853 7916 3.482436 ACAAGCAACGGTGAAATTCCTA 58.518 40.909 3.55 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.