Multiple sequence alignment - TraesCS7A01G380300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G380300 chr7A 100.000 7624 0 0 1 7624 555671853 555664230 0.000000e+00 14079.0
1 TraesCS7A01G380300 chr7A 80.410 439 69 11 193 628 670570612 670571036 1.230000e-82 318.0
2 TraesCS7A01G380300 chr7A 86.702 188 23 2 442 628 670602059 670602245 2.790000e-49 207.0
3 TraesCS7A01G380300 chr7A 77.632 152 24 8 7427 7575 121901069 121900925 4.900000e-12 84.2
4 TraesCS7A01G380300 chr7B 96.610 2065 63 4 2919 4980 516482226 516480166 0.000000e+00 3419.0
5 TraesCS7A01G380300 chr7B 95.143 1709 67 9 4981 6681 516480009 516478309 0.000000e+00 2682.0
6 TraesCS7A01G380300 chr7B 96.667 1140 31 7 914 2053 516484242 516483110 0.000000e+00 1888.0
7 TraesCS7A01G380300 chr7B 90.249 923 53 16 6710 7623 516478315 516477421 0.000000e+00 1171.0
8 TraesCS7A01G380300 chr7B 92.439 529 29 6 2345 2862 516482752 516482224 0.000000e+00 745.0
9 TraesCS7A01G380300 chr7B 80.913 241 16 12 2077 2313 516483122 516482908 6.120000e-36 163.0
10 TraesCS7A01G380300 chr7D 95.640 2064 62 3 2919 4980 488049197 488047160 0.000000e+00 3288.0
11 TraesCS7A01G380300 chr7D 97.253 1165 28 4 889 2053 488051190 488050030 0.000000e+00 1971.0
12 TraesCS7A01G380300 chr7D 92.932 1146 60 12 4981 6112 488047003 488045865 0.000000e+00 1648.0
13 TraesCS7A01G380300 chr7D 92.000 875 56 9 1 870 488128560 488127695 0.000000e+00 1216.0
14 TraesCS7A01G380300 chr7D 91.418 536 28 7 2345 2862 488049730 488049195 0.000000e+00 719.0
15 TraesCS7A01G380300 chr7D 87.627 493 50 8 6145 6634 488045791 488045307 5.170000e-156 562.0
16 TraesCS7A01G380300 chr7D 87.179 273 26 5 2077 2345 488050042 488049775 1.240000e-77 302.0
17 TraesCS7A01G380300 chr7D 100.000 32 0 0 860 891 488126498 488126467 8.260000e-05 60.2
18 TraesCS7A01G380300 chr4D 80.039 511 99 2 197 705 487362505 487361996 7.220000e-100 375.0
19 TraesCS7A01G380300 chr4D 78.333 120 14 5 7457 7576 467971468 467971361 4.940000e-07 67.6
20 TraesCS7A01G380300 chr3D 80.769 416 75 5 197 610 23124572 23124160 3.430000e-83 320.0
21 TraesCS7A01G380300 chr3D 76.384 542 92 16 193 724 7315012 7314497 7.590000e-65 259.0
22 TraesCS7A01G380300 chr3B 87.770 139 16 1 1816 1954 772440605 772440468 2.200000e-35 161.0
23 TraesCS7A01G380300 chr1A 81.429 140 21 4 7435 7574 542432560 542432426 8.090000e-20 110.0
24 TraesCS7A01G380300 chr5B 82.258 124 18 3 7454 7577 328369346 328369465 3.760000e-18 104.0
25 TraesCS7A01G380300 chr2D 79.861 144 23 5 7442 7585 65659256 65659393 4.870000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G380300 chr7A 555664230 555671853 7623 True 14079.0 14079 100.000000 1 7624 1 chr7A.!!$R2 7623
1 TraesCS7A01G380300 chr7B 516477421 516484242 6821 True 1678.0 3419 92.003500 914 7623 6 chr7B.!!$R1 6709
2 TraesCS7A01G380300 chr7D 488045307 488051190 5883 True 1415.0 3288 92.008167 889 6634 6 chr7D.!!$R1 5745
3 TraesCS7A01G380300 chr7D 488126467 488128560 2093 True 638.1 1216 96.000000 1 891 2 chr7D.!!$R2 890
4 TraesCS7A01G380300 chr4D 487361996 487362505 509 True 375.0 375 80.039000 197 705 1 chr4D.!!$R2 508
5 TraesCS7A01G380300 chr3D 7314497 7315012 515 True 259.0 259 76.384000 193 724 1 chr3D.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 613 0.034337 CGAGGTTGGGGAAGAACGAA 59.966 55.0 0.00 0.00 0.00 3.85 F
649 651 0.830648 CCAACCTCCTCGCTCCATAA 59.169 55.0 0.00 0.00 0.00 1.90 F
2315 3527 0.179073 CTAGGCGTATGCAAGGCTGT 60.179 55.0 20.86 9.12 45.35 4.40 F
3867 5222 0.033208 TCCCCAATGTGAAGGATGGC 60.033 55.0 0.00 0.00 0.00 4.40 F
4710 6067 0.247460 GGCTTTTCTTGTGCCCATCC 59.753 55.0 0.00 0.00 40.71 3.51 F
5208 6726 0.697854 ACCTCAGGTTTCAGTGGGGT 60.698 55.0 0.00 0.00 43.18 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 3039 0.034574 AATTGACATGCCCAGGCGTA 60.035 50.0 2.37 0.0 45.51 4.42 R
2338 3629 0.108329 AAATACACCCCTGAGCGTCG 60.108 55.0 0.00 0.0 0.00 5.12 R
4123 5478 0.249120 CGTGCCTGATAGACCCACAA 59.751 55.0 0.00 0.0 0.00 3.33 R
4864 6221 0.531974 AGCGTTGGCGAAAGAAGTCA 60.532 50.0 0.00 0.0 46.35 3.41 R
5982 7511 0.247185 CTGGAAAATGGGCGTGCATT 59.753 50.0 0.00 0.0 0.00 3.56 R
6741 8316 0.045623 TAAGCTCCCATTCCCCCTCA 59.954 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.894828 TCTTGAAGCCGTTATTGTTTAAGAC 58.105 36.000 0.00 0.00 0.00 3.01
54 55 6.531439 CCGTTATTGTTTAAGACCTTTCTCG 58.469 40.000 0.00 0.00 0.00 4.04
63 64 7.170998 TGTTTAAGACCTTTCTCGTTCTCATTC 59.829 37.037 0.00 0.00 0.00 2.67
86 87 5.989168 TCTGGTATCAAATATAGTTGGTGCG 59.011 40.000 12.62 0.00 0.00 5.34
87 88 5.060506 TGGTATCAAATATAGTTGGTGCGG 58.939 41.667 12.62 0.00 0.00 5.69
93 94 5.937540 TCAAATATAGTTGGTGCGGATATGG 59.062 40.000 12.62 0.00 0.00 2.74
94 95 5.499004 AATATAGTTGGTGCGGATATGGT 57.501 39.130 0.00 0.00 0.00 3.55
95 96 2.902705 TAGTTGGTGCGGATATGGTC 57.097 50.000 0.00 0.00 0.00 4.02
102 103 2.542597 GTGCGGATATGGTCGTTGTTA 58.457 47.619 0.00 0.00 0.00 2.41
226 228 4.832266 AGCAACCACCTATTTCATTTCACA 59.168 37.500 0.00 0.00 0.00 3.58
268 270 7.147312 ACATAATCAACCACATGTGAAAACTG 58.853 34.615 27.46 14.95 30.64 3.16
444 446 1.412710 GTCGATGAGCCTCCACCATTA 59.587 52.381 0.00 0.00 0.00 1.90
451 453 2.173569 GAGCCTCCACCATTACCAGATT 59.826 50.000 0.00 0.00 0.00 2.40
504 506 2.447443 AGTCGATGAACAGGACTGCTA 58.553 47.619 9.41 0.00 39.43 3.49
566 568 3.712907 GCCCCCGTGCTACCTTGA 61.713 66.667 0.00 0.00 0.00 3.02
568 570 1.607612 CCCCCGTGCTACCTTGAAT 59.392 57.895 0.00 0.00 0.00 2.57
611 613 0.034337 CGAGGTTGGGGAAGAACGAA 59.966 55.000 0.00 0.00 0.00 3.85
649 651 0.830648 CCAACCTCCTCGCTCCATAA 59.169 55.000 0.00 0.00 0.00 1.90
708 712 2.202770 AAACGCCGACGACACACA 60.203 55.556 0.00 0.00 43.93 3.72
709 713 1.593209 AAACGCCGACGACACACAT 60.593 52.632 0.00 0.00 43.93 3.21
741 747 1.592543 GCCTCTTTGCCGTTGTTTTTG 59.407 47.619 0.00 0.00 0.00 2.44
742 748 2.887337 CCTCTTTGCCGTTGTTTTTGT 58.113 42.857 0.00 0.00 0.00 2.83
754 760 5.175126 CCGTTGTTTTTGTTTTGTGTGTACA 59.825 36.000 0.00 0.00 34.31 2.90
761 767 5.682943 TTGTTTTGTGTGTACATAGAGGC 57.317 39.130 0.00 0.00 36.53 4.70
812 818 6.269769 TCCCTCTTGGATGCTTTGTTTTAATT 59.730 34.615 0.00 0.00 38.61 1.40
846 852 7.772332 ACTAATAAAATCTACTGTGCCTTCG 57.228 36.000 0.00 0.00 0.00 3.79
851 857 5.767816 AAATCTACTGTGCCTTCGTTTTT 57.232 34.783 0.00 0.00 0.00 1.94
852 858 5.358298 AATCTACTGTGCCTTCGTTTTTC 57.642 39.130 0.00 0.00 0.00 2.29
856 862 4.450082 ACTGTGCCTTCGTTTTTCTTTT 57.550 36.364 0.00 0.00 0.00 2.27
857 863 5.570234 ACTGTGCCTTCGTTTTTCTTTTA 57.430 34.783 0.00 0.00 0.00 1.52
940 2152 3.284449 ACCGCAGTTTTCACCGCC 61.284 61.111 0.00 0.00 0.00 6.13
1073 2285 1.074850 CCTCCCTCCTCTTCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
1134 2346 2.754254 CAAAACCCTAGCCCGCCC 60.754 66.667 0.00 0.00 0.00 6.13
1731 2943 0.883370 GTTTCACAGACACCCGGGTC 60.883 60.000 27.51 14.74 38.08 4.46
1785 2997 2.407616 CCGATGTCGCTCGTGCTA 59.592 61.111 7.97 0.00 36.93 3.49
1791 3003 0.953960 TGTCGCTCGTGCTAGAGTCA 60.954 55.000 7.97 5.65 40.26 3.41
1818 3030 2.284190 GGCAAGTCCTATCTCTGCAAC 58.716 52.381 0.00 0.00 0.00 4.17
1827 3039 4.596212 TCCTATCTCTGCAACATCATGGAT 59.404 41.667 0.00 0.00 0.00 3.41
1971 3183 8.655935 TTATATATCTCTGCTCAACTGATGGA 57.344 34.615 0.00 0.00 0.00 3.41
1994 3206 6.073548 GGATTGAACTCTGTTTGCTATATCGG 60.074 42.308 0.00 0.00 0.00 4.18
2001 3213 5.382616 TCTGTTTGCTATATCGGAGTAGGA 58.617 41.667 3.37 0.00 0.00 2.94
2014 3226 6.461110 TCGGAGTAGGAAGTATTAAACTGG 57.539 41.667 0.00 0.00 38.88 4.00
2028 3240 9.569122 AGTATTAAACTGGAATTAGTGTTGTGT 57.431 29.630 0.00 0.00 36.93 3.72
2065 3277 7.452880 TGTTAGATAAGGATATGGCAATTGC 57.547 36.000 22.47 22.47 41.14 3.56
2066 3278 7.003482 TGTTAGATAAGGATATGGCAATTGCA 58.997 34.615 30.32 17.35 44.36 4.08
2067 3279 7.670979 TGTTAGATAAGGATATGGCAATTGCAT 59.329 33.333 30.32 22.23 44.36 3.96
2068 3280 8.526147 GTTAGATAAGGATATGGCAATTGCATT 58.474 33.333 30.32 19.14 44.36 3.56
2069 3281 7.549147 AGATAAGGATATGGCAATTGCATTT 57.451 32.000 30.32 16.75 44.36 2.32
2070 3282 7.383687 AGATAAGGATATGGCAATTGCATTTG 58.616 34.615 30.32 15.38 44.36 2.32
2071 3283 5.362105 AAGGATATGGCAATTGCATTTGT 57.638 34.783 30.32 13.19 44.36 2.83
2072 3284 4.952460 AGGATATGGCAATTGCATTTGTC 58.048 39.130 30.32 19.73 44.36 3.18
2073 3285 4.652421 AGGATATGGCAATTGCATTTGTCT 59.348 37.500 30.32 17.27 44.36 3.41
2074 3286 4.748102 GGATATGGCAATTGCATTTGTCTG 59.252 41.667 30.32 1.33 44.36 3.51
2075 3287 3.965379 ATGGCAATTGCATTTGTCTGA 57.035 38.095 30.32 7.71 44.36 3.27
2076 3288 3.747854 TGGCAATTGCATTTGTCTGAA 57.252 38.095 30.32 4.35 44.36 3.02
2077 3289 4.274602 TGGCAATTGCATTTGTCTGAAT 57.725 36.364 30.32 0.00 44.36 2.57
2078 3290 3.997681 TGGCAATTGCATTTGTCTGAATG 59.002 39.130 30.32 0.00 44.36 2.67
2079 3291 3.998341 GGCAATTGCATTTGTCTGAATGT 59.002 39.130 30.32 0.00 44.36 2.71
2080 3292 4.142988 GGCAATTGCATTTGTCTGAATGTG 60.143 41.667 30.32 0.00 44.36 3.21
2081 3293 4.687018 GCAATTGCATTTGTCTGAATGTGA 59.313 37.500 25.36 0.00 38.86 3.58
2082 3294 5.163992 GCAATTGCATTTGTCTGAATGTGAG 60.164 40.000 25.36 0.00 38.86 3.51
2083 3295 5.970317 ATTGCATTTGTCTGAATGTGAGA 57.030 34.783 0.00 0.00 38.86 3.27
2084 3296 5.970317 TTGCATTTGTCTGAATGTGAGAT 57.030 34.783 0.00 0.00 38.86 2.75
2085 3297 7.634671 ATTGCATTTGTCTGAATGTGAGATA 57.365 32.000 0.00 0.00 38.86 1.98
2086 3298 7.634671 TTGCATTTGTCTGAATGTGAGATAT 57.365 32.000 0.00 0.00 38.86 1.63
2087 3299 7.023197 TGCATTTGTCTGAATGTGAGATATG 57.977 36.000 0.00 0.00 38.86 1.78
2088 3300 6.038936 TGCATTTGTCTGAATGTGAGATATGG 59.961 38.462 0.00 0.00 38.86 2.74
2104 3316 9.458727 GTGAGATATGGGTTCATCATAATTCAT 57.541 33.333 0.00 0.00 34.96 2.57
2126 3338 4.689612 TTGAACAAGAGACTTGCTAGGT 57.310 40.909 10.78 0.00 0.00 3.08
2157 3369 6.542005 TCTTTACAGCTTCACAAGTTCATTGA 59.458 34.615 0.00 0.00 41.83 2.57
2159 3371 5.779529 ACAGCTTCACAAGTTCATTGAAT 57.220 34.783 1.78 0.00 41.83 2.57
2212 3424 6.633500 TTCTGTTGGAAGTGGATAAAACAG 57.367 37.500 6.95 6.95 43.62 3.16
2213 3425 5.690865 TCTGTTGGAAGTGGATAAAACAGT 58.309 37.500 11.76 0.00 43.07 3.55
2214 3426 5.530915 TCTGTTGGAAGTGGATAAAACAGTG 59.469 40.000 11.76 0.00 43.07 3.66
2231 3443 8.896320 AAAACAGTGTGTGTATCAGTATTACA 57.104 30.769 0.00 0.00 39.03 2.41
2232 3444 8.896320 AAACAGTGTGTGTATCAGTATTACAA 57.104 30.769 0.00 0.00 39.03 2.41
2257 3469 3.780294 ACCACATCTTACCCAAGCATCTA 59.220 43.478 0.00 0.00 0.00 1.98
2260 3472 5.652014 CCACATCTTACCCAAGCATCTAAAA 59.348 40.000 0.00 0.00 0.00 1.52
2261 3473 6.152661 CCACATCTTACCCAAGCATCTAAAAA 59.847 38.462 0.00 0.00 0.00 1.94
2290 3502 5.694231 TGAATGACATGACTGGTTCAAAG 57.306 39.130 0.00 0.00 37.92 2.77
2291 3503 5.132502 TGAATGACATGACTGGTTCAAAGT 58.867 37.500 0.00 0.00 37.92 2.66
2294 3506 4.065088 TGACATGACTGGTTCAAAGTAGC 58.935 43.478 0.00 0.00 37.92 3.58
2296 3508 1.508632 TGACTGGTTCAAAGTAGCGC 58.491 50.000 0.00 0.00 0.00 5.92
2313 3525 1.227674 GCTAGGCGTATGCAAGGCT 60.228 57.895 17.50 17.50 45.35 4.58
2315 3527 0.179073 CTAGGCGTATGCAAGGCTGT 60.179 55.000 20.86 9.12 45.35 4.40
2317 3529 1.137404 GGCGTATGCAAGGCTGTTG 59.863 57.895 9.59 0.00 45.35 3.33
2338 3629 2.046314 TTCGCCTAGTGCCCAAGC 60.046 61.111 0.00 0.00 36.24 4.01
2358 3694 1.369625 GACGCTCAGGGGTGTATTTG 58.630 55.000 0.00 0.00 38.76 2.32
2361 3697 1.376609 GCTCAGGGGTGTATTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
2370 3706 3.805971 GGGTGTATTTGGCGTATAGACAC 59.194 47.826 7.80 0.00 37.81 3.67
2372 3708 5.221303 GGGTGTATTTGGCGTATAGACACTA 60.221 44.000 0.00 0.00 37.81 2.74
2374 3710 6.927381 GGTGTATTTGGCGTATAGACACTAAT 59.073 38.462 0.00 0.00 37.81 1.73
2378 3714 9.646336 GTATTTGGCGTATAGACACTAATTTTG 57.354 33.333 0.00 0.00 37.81 2.44
2381 3717 4.024302 GGCGTATAGACACTAATTTTGGGC 60.024 45.833 0.00 0.00 0.00 5.36
2382 3718 4.573201 GCGTATAGACACTAATTTTGGGCA 59.427 41.667 0.00 0.00 0.00 5.36
2383 3719 5.238650 GCGTATAGACACTAATTTTGGGCAT 59.761 40.000 0.00 0.00 0.00 4.40
2384 3720 6.658831 CGTATAGACACTAATTTTGGGCATG 58.341 40.000 0.00 0.00 0.00 4.06
2385 3721 6.481976 CGTATAGACACTAATTTTGGGCATGA 59.518 38.462 0.00 0.00 0.00 3.07
2392 3729 7.719483 ACACTAATTTTGGGCATGATAATGAG 58.281 34.615 0.00 0.00 0.00 2.90
2398 3735 6.463995 TTTGGGCATGATAATGAGTAAACC 57.536 37.500 0.00 0.00 0.00 3.27
2420 3757 1.003718 AGCTACTGGTTTGGCCGTC 60.004 57.895 0.00 0.00 41.21 4.79
2468 3805 4.941263 TGAACGCCTGAAGCTACAAATATT 59.059 37.500 0.00 0.00 40.39 1.28
2469 3806 4.882671 ACGCCTGAAGCTACAAATATTG 57.117 40.909 0.00 0.00 40.39 1.90
2470 3807 3.065371 ACGCCTGAAGCTACAAATATTGC 59.935 43.478 0.00 0.00 40.39 3.56
2517 3864 7.549134 AGATCTGCATGTTTTAAACAGACGATA 59.451 33.333 15.83 1.22 45.95 2.92
2528 3875 8.725405 TTTAAACAGACGATATTTATCCTGCA 57.275 30.769 0.00 0.00 30.14 4.41
2608 3956 8.465273 AGCTTAACTTTTATTCAGTTGGAACT 57.535 30.769 0.00 0.00 38.60 3.01
2684 4032 5.381174 TGACAAAGGCATTGAGAAATCAG 57.619 39.130 9.74 0.00 41.85 2.90
2685 4033 4.171754 GACAAAGGCATTGAGAAATCAGC 58.828 43.478 9.74 0.00 41.85 4.26
2692 4040 4.413087 GCATTGAGAAATCAGCAGAGTTG 58.587 43.478 0.00 0.00 31.24 3.16
2701 4049 1.273606 TCAGCAGAGTTGACACTAGGC 59.726 52.381 0.00 0.00 34.02 3.93
2751 4099 9.545105 TCTTGAAATTATCAGCATTGTTTTGTT 57.455 25.926 0.00 0.00 39.77 2.83
2767 4121 6.971602 TGTTTTGTTTCTGTTGTGTTGTCTA 58.028 32.000 0.00 0.00 0.00 2.59
2862 4216 6.872020 AGCTTGTTCGTCTTGTATTAGCTAAA 59.128 34.615 10.85 0.00 34.92 1.85
2863 4217 7.386848 AGCTTGTTCGTCTTGTATTAGCTAAAA 59.613 33.333 10.85 0.00 34.92 1.52
2864 4218 7.477733 GCTTGTTCGTCTTGTATTAGCTAAAAC 59.522 37.037 10.85 7.51 0.00 2.43
2865 4219 8.597662 TTGTTCGTCTTGTATTAGCTAAAACT 57.402 30.769 10.85 0.00 0.00 2.66
2866 4220 9.695526 TTGTTCGTCTTGTATTAGCTAAAACTA 57.304 29.630 10.85 1.59 0.00 2.24
2867 4221 9.350357 TGTTCGTCTTGTATTAGCTAAAACTAG 57.650 33.333 10.85 6.50 0.00 2.57
2868 4222 8.805688 GTTCGTCTTGTATTAGCTAAAACTAGG 58.194 37.037 10.85 0.38 0.00 3.02
2869 4223 8.059798 TCGTCTTGTATTAGCTAAAACTAGGT 57.940 34.615 10.85 0.00 0.00 3.08
2870 4224 7.972277 TCGTCTTGTATTAGCTAAAACTAGGTG 59.028 37.037 10.85 0.00 0.00 4.00
2871 4225 7.222224 CGTCTTGTATTAGCTAAAACTAGGTGG 59.778 40.741 10.85 0.00 0.00 4.61
2872 4226 7.494952 GTCTTGTATTAGCTAAAACTAGGTGGG 59.505 40.741 10.85 0.00 0.00 4.61
2873 4227 5.677567 TGTATTAGCTAAAACTAGGTGGGC 58.322 41.667 10.85 0.00 0.00 5.36
2874 4228 4.855298 ATTAGCTAAAACTAGGTGGGCA 57.145 40.909 10.85 0.00 0.00 5.36
2875 4229 2.789409 AGCTAAAACTAGGTGGGCAG 57.211 50.000 0.00 0.00 0.00 4.85
2876 4230 1.985895 AGCTAAAACTAGGTGGGCAGT 59.014 47.619 0.00 0.00 0.00 4.40
2877 4231 2.084546 GCTAAAACTAGGTGGGCAGTG 58.915 52.381 0.00 0.00 0.00 3.66
2878 4232 2.711542 CTAAAACTAGGTGGGCAGTGG 58.288 52.381 0.00 0.00 0.00 4.00
2879 4233 0.112412 AAAACTAGGTGGGCAGTGGG 59.888 55.000 0.00 0.00 0.00 4.61
2880 4234 2.426305 AAACTAGGTGGGCAGTGGGC 62.426 60.000 0.00 0.00 43.74 5.36
2881 4235 3.011517 CTAGGTGGGCAGTGGGCT 61.012 66.667 0.00 0.00 44.01 5.19
2882 4236 2.531685 TAGGTGGGCAGTGGGCTT 60.532 61.111 0.00 0.00 44.01 4.35
2883 4237 1.229690 TAGGTGGGCAGTGGGCTTA 60.230 57.895 0.00 0.00 44.01 3.09
2884 4238 0.623324 TAGGTGGGCAGTGGGCTTAT 60.623 55.000 0.00 0.00 44.01 1.73
2885 4239 0.623324 AGGTGGGCAGTGGGCTTATA 60.623 55.000 0.00 0.00 44.01 0.98
2886 4240 0.478507 GGTGGGCAGTGGGCTTATAT 59.521 55.000 0.00 0.00 44.01 0.86
2887 4241 1.702957 GGTGGGCAGTGGGCTTATATA 59.297 52.381 0.00 0.00 44.01 0.86
2888 4242 2.107552 GGTGGGCAGTGGGCTTATATAA 59.892 50.000 0.00 0.00 44.01 0.98
2889 4243 3.435890 GGTGGGCAGTGGGCTTATATAAA 60.436 47.826 0.00 0.00 44.01 1.40
2890 4244 4.211920 GTGGGCAGTGGGCTTATATAAAA 58.788 43.478 0.00 0.00 44.01 1.52
2891 4245 4.278419 GTGGGCAGTGGGCTTATATAAAAG 59.722 45.833 0.00 0.00 44.01 2.27
2892 4246 3.826729 GGGCAGTGGGCTTATATAAAAGG 59.173 47.826 0.00 0.00 44.01 3.11
2913 4267 7.929941 AAGGCCTTATATTCTTATAAGCTGC 57.070 36.000 18.87 0.00 43.00 5.25
2914 4268 7.020827 AGGCCTTATATTCTTATAAGCTGCA 57.979 36.000 0.00 0.00 43.00 4.41
2915 4269 7.637511 AGGCCTTATATTCTTATAAGCTGCAT 58.362 34.615 0.00 0.00 43.00 3.96
2916 4270 7.555554 AGGCCTTATATTCTTATAAGCTGCATG 59.444 37.037 0.00 0.00 43.00 4.06
2917 4271 7.337942 GGCCTTATATTCTTATAAGCTGCATGT 59.662 37.037 7.67 0.00 43.00 3.21
2918 4272 8.734386 GCCTTATATTCTTATAAGCTGCATGTT 58.266 33.333 7.67 0.00 43.00 2.71
2927 4281 7.442364 TCTTATAAGCTGCATGTTAATGACCTC 59.558 37.037 7.67 0.00 35.67 3.85
2930 4284 2.357009 GCTGCATGTTAATGACCTCCAG 59.643 50.000 0.00 0.00 35.67 3.86
2944 4298 4.058817 GACCTCCAGTACTGTTTTCACTG 58.941 47.826 21.18 3.81 39.50 3.66
2963 4317 7.467557 TCACTGAAATGAAAAACTGCAAATC 57.532 32.000 0.00 0.00 0.00 2.17
2993 4347 7.730084 ACATGCACTAGAAGCAGAATATAAGA 58.270 34.615 17.00 0.00 46.36 2.10
3044 4398 1.059913 AACAGGAGTAGCTTGGCTGT 58.940 50.000 0.00 0.00 40.10 4.40
3049 4403 1.212616 GAGTAGCTTGGCTGTATGCG 58.787 55.000 0.00 0.00 44.05 4.73
3065 4419 1.356624 GCGTACATGCCAGCATTCC 59.643 57.895 1.47 0.00 33.90 3.01
3178 4533 2.586079 AGGGCGATTCGTCATGCG 60.586 61.111 13.30 3.55 43.01 4.73
3229 4584 7.283625 TGTGATTAACAAGGTACATTTTGCT 57.716 32.000 0.00 0.00 35.24 3.91
3241 4596 5.010213 GGTACATTTTGCTTGGTTCCACTTA 59.990 40.000 0.00 0.00 0.00 2.24
3289 4644 0.099613 AGCTGACGTATGCTCTCACG 59.900 55.000 8.71 0.00 43.63 4.35
3438 4793 0.685097 GCACTCAACTGGTAGACCCA 59.315 55.000 0.00 0.00 42.51 4.51
3564 4919 4.934075 TGAGAAATTTGCATCTCGTCTG 57.066 40.909 9.81 0.00 44.01 3.51
3704 5059 1.876156 GGTTGTTGGAGAGCAACAGAG 59.124 52.381 9.20 0.00 44.70 3.35
3715 5070 5.122082 GGAGAGCAACAGAGAATTCTTGAAG 59.878 44.000 9.87 8.80 0.00 3.02
3828 5183 1.810755 GGCACTGCTACTGGTTTTACC 59.189 52.381 0.00 0.00 39.22 2.85
3867 5222 0.033208 TCCCCAATGTGAAGGATGGC 60.033 55.000 0.00 0.00 0.00 4.40
3909 5264 5.932303 ACACATATACACTGGTCAACAAGAC 59.068 40.000 0.00 0.00 46.83 3.01
4123 5478 2.505819 ACTGTCAAAGAGGTCACCAAGT 59.494 45.455 0.00 0.00 0.00 3.16
4167 5522 3.244630 ACCGTGTTCCAATAAGTAAGGCA 60.245 43.478 0.00 0.00 0.00 4.75
4269 5624 9.730705 ATGGATGAAGATGTGTACATATTTAGG 57.269 33.333 6.55 0.00 37.84 2.69
4299 5654 5.172934 CGCTTCAATACCTTACCTGTTGTA 58.827 41.667 0.00 0.00 0.00 2.41
4335 5690 1.134965 CCTCTTAACCCGAGTGAGCTG 60.135 57.143 0.00 0.00 0.00 4.24
4356 5711 2.755103 GCCTAAAATGGTGGAAGGTCTG 59.245 50.000 0.00 0.00 0.00 3.51
4410 5765 6.718522 ATTACTAAGGTAGAAGAGTCAGGC 57.281 41.667 0.00 0.00 0.00 4.85
4452 5807 6.661377 GGACTGGTGAGCTATATCTAGATTCA 59.339 42.308 11.25 5.25 0.00 2.57
4505 5860 8.294954 TCTGAGGTAGAAGTGAAGGTATAAAG 57.705 38.462 0.00 0.00 30.84 1.85
4533 5888 6.512297 TGCACTTGGTTTATTTTTCCTTCTC 58.488 36.000 0.00 0.00 0.00 2.87
4541 5896 9.594478 TGGTTTATTTTTCCTTCTCTTTTGAAC 57.406 29.630 0.00 0.00 0.00 3.18
4561 5916 4.257267 ACCAGATTTTTACTTTGCTGCC 57.743 40.909 0.00 0.00 0.00 4.85
4710 6067 0.247460 GGCTTTTCTTGTGCCCATCC 59.753 55.000 0.00 0.00 40.71 3.51
4752 6109 6.127479 ACAAACACACATGGTCAACTAATTGT 60.127 34.615 0.00 0.00 37.11 2.71
4770 6127 2.997980 TGTGGCTTTCTTTGTCTGTGA 58.002 42.857 0.00 0.00 0.00 3.58
4771 6128 2.682856 TGTGGCTTTCTTTGTCTGTGAC 59.317 45.455 0.00 0.00 0.00 3.67
4831 6188 5.280419 GGCAGAAGATATAGAGAATGGCCTT 60.280 44.000 3.32 0.00 33.89 4.35
4834 6191 6.873076 CAGAAGATATAGAGAATGGCCTTGTC 59.127 42.308 3.32 4.11 0.00 3.18
4864 6221 3.135530 ACTCAAGGCAGAAAGAAGTCACT 59.864 43.478 0.00 0.00 0.00 3.41
4968 6325 2.222027 GCAAACTGCTTACTGACCTGT 58.778 47.619 0.00 0.00 40.96 4.00
4976 6333 2.160417 GCTTACTGACCTGTCATTGTGC 59.840 50.000 0.00 1.61 39.13 4.57
4989 6503 5.202765 TGTCATTGTGCAGGATATTTCCAT 58.797 37.500 4.92 0.00 45.30 3.41
4995 6509 6.357579 TGTGCAGGATATTTCCATTTTGTT 57.642 33.333 4.92 0.00 45.30 2.83
5009 6523 5.995282 TCCATTTTGTTGACTGAACGTATCT 59.005 36.000 0.00 0.00 37.38 1.98
5020 6534 7.375834 TGACTGAACGTATCTTACTTTGACAT 58.624 34.615 0.00 0.00 0.00 3.06
5021 6535 7.328493 TGACTGAACGTATCTTACTTTGACATG 59.672 37.037 0.00 0.00 0.00 3.21
5040 6554 3.906720 TGCAGGGTCCTAACATTCTAC 57.093 47.619 0.00 0.00 0.00 2.59
5075 6589 3.604875 TCGGTTGAGGTGGATAAGAAC 57.395 47.619 0.00 0.00 0.00 3.01
5167 6681 6.152661 CCTTTGGAATATTTGTCAGTGCCTTA 59.847 38.462 0.00 0.00 0.00 2.69
5168 6682 7.309744 CCTTTGGAATATTTGTCAGTGCCTTAA 60.310 37.037 0.00 0.00 0.00 1.85
5176 6694 7.894376 ATTTGTCAGTGCCTTAATCATTTTG 57.106 32.000 0.00 0.00 0.00 2.44
5208 6726 0.697854 ACCTCAGGTTTCAGTGGGGT 60.698 55.000 0.00 0.00 43.18 4.95
5263 6781 7.872113 ATTAGGAATGTGAAGTTCAAGATCC 57.128 36.000 17.97 17.97 0.00 3.36
5280 6798 6.486320 TCAAGATCCTAAATGCAAATATCGCA 59.514 34.615 0.00 2.54 44.94 5.10
5304 6822 4.054825 CCATTGCACCGTGGTGGC 62.055 66.667 20.00 12.64 45.49 5.01
5328 6846 1.334869 CAAATAATCCCCACAGCTCGC 59.665 52.381 0.00 0.00 0.00 5.03
5352 6870 3.686726 GGGTTGTCTACTCAGCATTTCTG 59.313 47.826 0.00 0.00 44.21 3.02
5370 6888 3.300388 TCTGATGGCTAATCCTCGACTT 58.700 45.455 0.00 0.00 34.00 3.01
5388 6906 6.278363 TCGACTTATGGAGCCTGTTTATTAC 58.722 40.000 0.00 0.00 0.00 1.89
5468 6987 5.649395 AGAACATGTGTATTTGATGACCTGG 59.351 40.000 0.00 0.00 0.00 4.45
5480 6999 3.327464 TGATGACCTGGTCTGACAAATGA 59.673 43.478 26.03 4.36 33.15 2.57
5523 7042 5.042463 TCCAAACTCCAATTGACTGTGTA 57.958 39.130 7.12 0.00 0.00 2.90
5586 7105 1.995626 AGCCGATGTACCCAAGCCT 60.996 57.895 0.00 0.00 0.00 4.58
5614 7133 6.980978 CACTCCAGTATATGTTGTCAAGGTAG 59.019 42.308 0.00 0.00 0.00 3.18
5953 7475 8.775527 CATCTAGATACTGAACGTACATACAGT 58.224 37.037 4.54 16.11 44.17 3.55
5989 7518 8.501580 ACTGATCATGAATTAATCTAATGCACG 58.498 33.333 0.00 0.00 36.56 5.34
6197 7767 2.560861 GAGACGCAATTTGCCGCA 59.439 55.556 15.45 0.00 41.12 5.69
6219 7794 7.429633 CGCATTTTGATGGTTGGGTATTATTA 58.570 34.615 0.00 0.00 0.00 0.98
6220 7795 8.087750 CGCATTTTGATGGTTGGGTATTATTAT 58.912 33.333 0.00 0.00 0.00 1.28
6221 7796 9.206870 GCATTTTGATGGTTGGGTATTATTATG 57.793 33.333 0.00 0.00 0.00 1.90
6286 7861 7.534578 GTCATGTATGTACTATCGCTCTAACAC 59.465 40.741 0.00 0.00 0.00 3.32
6427 8002 5.694816 TCACAAATTACAACCATTGTAGCG 58.305 37.500 1.99 0.00 45.92 4.26
6529 8104 1.338769 ACTGGACGTAATGTGCCTTCC 60.339 52.381 0.00 0.00 38.31 3.46
6540 8115 1.073284 TGTGCCTTCCTGGTAAACTCC 59.927 52.381 0.00 0.00 38.35 3.85
6562 8137 4.162320 CCTGTGAGGTGGTGTATGTCTATT 59.838 45.833 0.00 0.00 0.00 1.73
6564 8139 4.081142 TGTGAGGTGGTGTATGTCTATTGG 60.081 45.833 0.00 0.00 0.00 3.16
6665 8240 3.077088 TGTCTTCTGTTACTACCCCCTCT 59.923 47.826 0.00 0.00 0.00 3.69
6668 8243 3.097342 TCTGTTACTACCCCCTCTGTC 57.903 52.381 0.00 0.00 0.00 3.51
6670 8245 1.109609 GTTACTACCCCCTCTGTCCG 58.890 60.000 0.00 0.00 0.00 4.79
6671 8246 0.706433 TTACTACCCCCTCTGTCCGT 59.294 55.000 0.00 0.00 0.00 4.69
6673 8248 0.614134 ACTACCCCCTCTGTCCGTTC 60.614 60.000 0.00 0.00 0.00 3.95
6674 8249 1.305549 TACCCCCTCTGTCCGTTCC 60.306 63.158 0.00 0.00 0.00 3.62
6675 8250 2.096707 TACCCCCTCTGTCCGTTCCA 62.097 60.000 0.00 0.00 0.00 3.53
6676 8251 1.995626 CCCCCTCTGTCCGTTCCAT 60.996 63.158 0.00 0.00 0.00 3.41
6677 8252 0.689745 CCCCCTCTGTCCGTTCCATA 60.690 60.000 0.00 0.00 0.00 2.74
6678 8253 1.424638 CCCCTCTGTCCGTTCCATAT 58.575 55.000 0.00 0.00 0.00 1.78
6679 8254 1.768870 CCCCTCTGTCCGTTCCATATT 59.231 52.381 0.00 0.00 0.00 1.28
6680 8255 2.485479 CCCCTCTGTCCGTTCCATATTG 60.485 54.545 0.00 0.00 0.00 1.90
6681 8256 2.213499 CCTCTGTCCGTTCCATATTGC 58.787 52.381 0.00 0.00 0.00 3.56
6682 8257 2.213499 CTCTGTCCGTTCCATATTGCC 58.787 52.381 0.00 0.00 0.00 4.52
6683 8258 1.837439 TCTGTCCGTTCCATATTGCCT 59.163 47.619 0.00 0.00 0.00 4.75
6684 8259 3.035363 TCTGTCCGTTCCATATTGCCTA 58.965 45.455 0.00 0.00 0.00 3.93
6685 8260 3.069586 TCTGTCCGTTCCATATTGCCTAG 59.930 47.826 0.00 0.00 0.00 3.02
6686 8261 2.769663 TGTCCGTTCCATATTGCCTAGT 59.230 45.455 0.00 0.00 0.00 2.57
6687 8262 3.181469 TGTCCGTTCCATATTGCCTAGTC 60.181 47.826 0.00 0.00 0.00 2.59
6688 8263 3.069729 GTCCGTTCCATATTGCCTAGTCT 59.930 47.826 0.00 0.00 0.00 3.24
6689 8264 3.709653 TCCGTTCCATATTGCCTAGTCTT 59.290 43.478 0.00 0.00 0.00 3.01
6690 8265 4.163458 TCCGTTCCATATTGCCTAGTCTTT 59.837 41.667 0.00 0.00 0.00 2.52
6691 8266 4.511826 CCGTTCCATATTGCCTAGTCTTTC 59.488 45.833 0.00 0.00 0.00 2.62
6692 8267 5.116180 CGTTCCATATTGCCTAGTCTTTCA 58.884 41.667 0.00 0.00 0.00 2.69
6693 8268 5.760253 CGTTCCATATTGCCTAGTCTTTCAT 59.240 40.000 0.00 0.00 0.00 2.57
6694 8269 6.260936 CGTTCCATATTGCCTAGTCTTTCATT 59.739 38.462 0.00 0.00 0.00 2.57
6695 8270 7.201732 CGTTCCATATTGCCTAGTCTTTCATTT 60.202 37.037 0.00 0.00 0.00 2.32
6696 8271 7.807977 TCCATATTGCCTAGTCTTTCATTTC 57.192 36.000 0.00 0.00 0.00 2.17
6697 8272 6.772716 TCCATATTGCCTAGTCTTTCATTTCC 59.227 38.462 0.00 0.00 0.00 3.13
6698 8273 6.293626 CCATATTGCCTAGTCTTTCATTTCCG 60.294 42.308 0.00 0.00 0.00 4.30
6699 8274 2.985896 TGCCTAGTCTTTCATTTCCGG 58.014 47.619 0.00 0.00 0.00 5.14
6700 8275 1.671328 GCCTAGTCTTTCATTTCCGGC 59.329 52.381 0.00 0.00 0.00 6.13
6701 8276 2.939640 GCCTAGTCTTTCATTTCCGGCA 60.940 50.000 0.00 0.00 35.23 5.69
6702 8277 3.545703 CCTAGTCTTTCATTTCCGGCAT 58.454 45.455 0.00 0.00 0.00 4.40
6703 8278 3.313526 CCTAGTCTTTCATTTCCGGCATG 59.686 47.826 0.00 1.16 0.00 4.06
6704 8279 1.474077 AGTCTTTCATTTCCGGCATGC 59.526 47.619 9.90 9.90 0.00 4.06
6705 8280 1.202114 GTCTTTCATTTCCGGCATGCA 59.798 47.619 21.36 0.00 0.00 3.96
6706 8281 1.891811 TCTTTCATTTCCGGCATGCAA 59.108 42.857 21.36 5.21 0.00 4.08
6707 8282 2.094597 TCTTTCATTTCCGGCATGCAAG 60.095 45.455 21.36 12.70 0.00 4.01
6708 8283 0.531657 TTCATTTCCGGCATGCAAGG 59.468 50.000 21.36 21.34 0.00 3.61
6740 8315 4.323868 GCATAAGGGCCCATTTGGTTTAAA 60.324 41.667 27.56 0.00 36.04 1.52
6741 8316 5.631245 GCATAAGGGCCCATTTGGTTTAAAT 60.631 40.000 27.56 0.00 39.55 1.40
6765 8343 0.468214 GGGAATGGGAGCTTAAGGGC 60.468 60.000 4.29 0.00 0.00 5.19
6815 8393 5.337652 GCTAGAGATTGGTAGTTTGAGTGGT 60.338 44.000 0.00 0.00 0.00 4.16
6825 8403 5.106830 GGTAGTTTGAGTGGTAACGGAAATG 60.107 44.000 0.00 0.00 42.51 2.32
6836 8414 4.941873 GGTAACGGAAATGAACTTCCATCT 59.058 41.667 3.46 0.00 44.52 2.90
6837 8415 6.110707 GGTAACGGAAATGAACTTCCATCTA 58.889 40.000 3.46 0.00 44.52 1.98
6838 8416 6.766467 GGTAACGGAAATGAACTTCCATCTAT 59.234 38.462 3.46 0.00 44.52 1.98
6839 8417 7.282450 GGTAACGGAAATGAACTTCCATCTATT 59.718 37.037 3.46 0.00 44.52 1.73
6840 8418 7.703058 AACGGAAATGAACTTCCATCTATTT 57.297 32.000 3.46 0.00 44.52 1.40
6841 8419 7.321745 ACGGAAATGAACTTCCATCTATTTC 57.678 36.000 3.46 0.00 44.52 2.17
6842 8420 6.318900 ACGGAAATGAACTTCCATCTATTTCC 59.681 38.462 14.88 14.88 44.52 3.13
6843 8421 6.543831 CGGAAATGAACTTCCATCTATTTCCT 59.456 38.462 19.01 0.00 45.61 3.36
6844 8422 7.067494 CGGAAATGAACTTCCATCTATTTCCTT 59.933 37.037 19.01 0.00 45.61 3.36
6845 8423 8.409371 GGAAATGAACTTCCATCTATTTCCTTC 58.591 37.037 16.41 0.00 44.93 3.46
6846 8424 7.888250 AATGAACTTCCATCTATTTCCTTCC 57.112 36.000 0.00 0.00 0.00 3.46
6847 8425 6.387192 TGAACTTCCATCTATTTCCTTCCA 57.613 37.500 0.00 0.00 0.00 3.53
6848 8426 6.973642 TGAACTTCCATCTATTTCCTTCCAT 58.026 36.000 0.00 0.00 0.00 3.41
6849 8427 6.830324 TGAACTTCCATCTATTTCCTTCCATG 59.170 38.462 0.00 0.00 0.00 3.66
6850 8428 6.581388 ACTTCCATCTATTTCCTTCCATGA 57.419 37.500 0.00 0.00 0.00 3.07
6851 8429 7.159201 ACTTCCATCTATTTCCTTCCATGAT 57.841 36.000 0.00 0.00 0.00 2.45
6852 8430 7.002879 ACTTCCATCTATTTCCTTCCATGATG 58.997 38.462 0.00 0.00 0.00 3.07
6853 8431 6.520021 TCCATCTATTTCCTTCCATGATGT 57.480 37.500 0.00 0.00 0.00 3.06
6854 8432 6.301486 TCCATCTATTTCCTTCCATGATGTG 58.699 40.000 0.00 0.00 0.00 3.21
6873 8451 4.479158 TGTGGCCTTTCTGGATTAACTTT 58.521 39.130 3.32 0.00 38.35 2.66
6939 8517 4.030216 TGGGAGTTAGCTATGTCACATGA 58.970 43.478 0.00 0.00 0.00 3.07
6956 8534 4.949238 CACATGATTATTTGTCCACCCAGA 59.051 41.667 0.00 0.00 0.00 3.86
6961 8539 2.053747 ATTTGTCCACCCAGACCCTA 57.946 50.000 0.00 0.00 35.83 3.53
6965 8543 0.834687 GTCCACCCAGACCCTACACA 60.835 60.000 0.00 0.00 0.00 3.72
6974 8552 3.568430 CCAGACCCTACACAAAGGAAAAC 59.432 47.826 0.00 0.00 39.15 2.43
6983 8561 7.148069 CCCTACACAAAGGAAAACCTTCATATC 60.148 40.741 0.00 0.00 39.15 1.63
7039 8617 9.159364 TCATCAATTCAACAATTTGACAAAACA 57.841 25.926 4.41 0.00 41.64 2.83
7131 8713 5.293324 CACAAATGAATCAAATGCCTCCATG 59.707 40.000 0.00 0.00 0.00 3.66
7141 8723 3.197790 CCTCCATGGTTGCGCTCG 61.198 66.667 12.58 0.00 0.00 5.03
7167 8749 7.387119 TGATCCTCTTTTTCATGTTGATCAG 57.613 36.000 0.00 0.00 34.18 2.90
7178 8760 3.213206 TGTTGATCAGCCACTTCTTGT 57.787 42.857 7.13 0.00 0.00 3.16
7218 8800 3.350219 AGTGTACCACAACATGATCCC 57.650 47.619 0.00 0.00 36.74 3.85
7219 8801 2.912956 AGTGTACCACAACATGATCCCT 59.087 45.455 0.00 0.00 36.74 4.20
7234 8816 4.099633 TGATCCCTGACTCTCTCAATGTT 58.900 43.478 0.00 0.00 0.00 2.71
7236 8818 2.027745 TCCCTGACTCTCTCAATGTTGC 60.028 50.000 0.00 0.00 0.00 4.17
7245 8827 1.277842 TCTCAATGTTGCCGCCTTCTA 59.722 47.619 0.00 0.00 0.00 2.10
7276 8858 7.784037 ACCATTTTGCATATTTCTCTTGCATA 58.216 30.769 0.00 0.00 45.04 3.14
7328 8910 1.257743 TGTCTTTCACCCTCTCTCGG 58.742 55.000 0.00 0.00 0.00 4.63
7354 8936 2.290577 ACTCCATCCTCTTCCTTTGCAC 60.291 50.000 0.00 0.00 0.00 4.57
7358 8940 3.512724 CCATCCTCTTCCTTTGCACATTT 59.487 43.478 0.00 0.00 0.00 2.32
7360 8942 5.393461 CCATCCTCTTCCTTTGCACATTTAC 60.393 44.000 0.00 0.00 0.00 2.01
7368 8950 3.492313 CTTTGCACATTTACGAAGAGCC 58.508 45.455 0.00 0.00 30.10 4.70
7370 8952 2.346803 TGCACATTTACGAAGAGCCTC 58.653 47.619 0.00 0.00 0.00 4.70
7373 8955 4.181578 GCACATTTACGAAGAGCCTCTAA 58.818 43.478 0.00 0.00 0.00 2.10
7403 8985 1.675641 CTTCAACTCCTTGGCGGGG 60.676 63.158 0.00 0.00 40.09 5.73
7404 8986 3.204467 TTCAACTCCTTGGCGGGGG 62.204 63.158 0.00 0.00 37.70 5.40
7432 9014 2.899900 CCCCGTCCATATGATGAAGAGA 59.100 50.000 3.65 0.00 31.07 3.10
7490 9074 6.433847 AAGAAATACCCGTCCATATGATGA 57.566 37.500 3.65 0.00 31.07 2.92
7504 9088 5.235616 CCATATGATGAACATTTTGCTTGCC 59.764 40.000 3.65 0.00 40.07 4.52
7524 9108 4.760047 GCCATCACGCACGACCCT 62.760 66.667 0.00 0.00 0.00 4.34
7537 9121 1.324005 CGACCCTCTCCTTCTCCCAC 61.324 65.000 0.00 0.00 0.00 4.61
7544 9128 3.558109 CCTCTCCTTCTCCCACTTGTTTC 60.558 52.174 0.00 0.00 0.00 2.78
7548 9132 2.230660 CTTCTCCCACTTGTTTCCCAC 58.769 52.381 0.00 0.00 0.00 4.61
7552 9136 0.106217 CCCACTTGTTTCCCACCACT 60.106 55.000 0.00 0.00 0.00 4.00
7555 9139 2.099405 CACTTGTTTCCCACCACTTGT 58.901 47.619 0.00 0.00 0.00 3.16
7558 9142 0.464735 TGTTTCCCACCACTTGTCGG 60.465 55.000 0.00 0.00 0.00 4.79
7565 9149 1.534235 ACCACTTGTCGGCTCCTCT 60.534 57.895 0.00 0.00 0.00 3.69
7573 9157 1.302511 TCGGCTCCTCTTTTGGCAC 60.303 57.895 0.00 0.00 0.00 5.01
7587 9171 0.466543 TGGCACGGTGACTTGTAGTT 59.533 50.000 16.16 0.00 31.02 2.24
7589 9173 1.529865 GGCACGGTGACTTGTAGTTTC 59.470 52.381 13.29 0.00 31.02 2.78
7596 9180 2.283351 GTGACTTGTAGTTTCGTGCGTT 59.717 45.455 0.00 0.00 0.00 4.84
7607 9191 2.125512 GTGCGTTCGCTCCTCCAT 60.126 61.111 17.63 0.00 0.00 3.41
7620 9204 3.277715 CTCCTCCATTTTGCTCCTCTTC 58.722 50.000 0.00 0.00 0.00 2.87
7623 9207 3.539604 CTCCATTTTGCTCCTCTTCGAT 58.460 45.455 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.319453 TCAAGAAGGAAATGATGCTCAACT 58.681 37.500 0.00 0.00 0.00 3.16
23 24 6.072673 AGGTCTTAAACAATAACGGCTTCAAG 60.073 38.462 0.00 0.00 0.00 3.02
46 47 3.931578 ACCAGAATGAGAACGAGAAAGG 58.068 45.455 0.00 0.00 39.69 3.11
63 64 5.179368 CCGCACCAACTATATTTGATACCAG 59.821 44.000 4.48 0.00 0.00 4.00
86 87 8.832521 TGACAAATTATAACAACGACCATATCC 58.167 33.333 0.00 0.00 0.00 2.59
93 94 7.075741 ACAGCTTGACAAATTATAACAACGAC 58.924 34.615 0.00 0.00 0.00 4.34
94 95 7.197071 ACAGCTTGACAAATTATAACAACGA 57.803 32.000 0.00 0.00 0.00 3.85
95 96 7.851822 AACAGCTTGACAAATTATAACAACG 57.148 32.000 0.00 0.00 0.00 4.10
102 103 8.362639 AGTCATCAAAACAGCTTGACAAATTAT 58.637 29.630 13.40 0.00 38.12 1.28
253 255 5.505173 AGTCTTTCAGTTTTCACATGTGG 57.495 39.130 25.16 8.50 0.00 4.17
268 270 9.237846 CAATCTTGTTTTCTTGGTTAGTCTTTC 57.762 33.333 0.00 0.00 0.00 2.62
444 446 3.228188 TGGTGCTTCTTTGAATCTGGT 57.772 42.857 0.00 0.00 0.00 4.00
451 453 0.250684 TGGCGATGGTGCTTCTTTGA 60.251 50.000 0.00 0.00 34.52 2.69
504 506 0.108585 ACATGTGCCTCGTTCCTTGT 59.891 50.000 0.00 0.00 0.00 3.16
566 568 0.247736 GGATGCGGCGGATCTAGATT 59.752 55.000 34.38 4.59 0.00 2.40
568 570 2.276116 GGGATGCGGCGGATCTAGA 61.276 63.158 34.38 0.00 0.00 2.43
611 613 0.541863 GTCCGATGGTGGTGGATCTT 59.458 55.000 0.00 0.00 33.63 2.40
649 651 3.717294 GGCCAGGGTGACGGATGT 61.717 66.667 0.00 0.00 0.00 3.06
697 701 5.264060 AGATTTGTTTATGTGTGTCGTCG 57.736 39.130 0.00 0.00 0.00 5.12
698 702 5.305812 CGAGATTTGTTTATGTGTGTCGTC 58.694 41.667 0.00 0.00 0.00 4.20
699 703 4.377022 GCGAGATTTGTTTATGTGTGTCGT 60.377 41.667 0.00 0.00 0.00 4.34
701 705 4.154195 AGGCGAGATTTGTTTATGTGTGTC 59.846 41.667 0.00 0.00 0.00 3.67
708 712 4.142381 GGCAAAGAGGCGAGATTTGTTTAT 60.142 41.667 0.00 0.00 36.52 1.40
709 713 3.190535 GGCAAAGAGGCGAGATTTGTTTA 59.809 43.478 0.00 0.00 36.52 2.01
741 747 3.124636 CCGCCTCTATGTACACACAAAAC 59.875 47.826 0.00 0.00 38.42 2.43
742 748 3.007074 TCCGCCTCTATGTACACACAAAA 59.993 43.478 0.00 0.00 38.42 2.44
754 760 1.204941 GAACACACACTCCGCCTCTAT 59.795 52.381 0.00 0.00 0.00 1.98
761 767 0.943673 TGCAATGAACACACACTCCG 59.056 50.000 0.00 0.00 0.00 4.63
829 835 5.531287 AGAAAAACGAAGGCACAGTAGATTT 59.469 36.000 0.00 0.00 0.00 2.17
836 842 4.738252 GGTAAAAGAAAAACGAAGGCACAG 59.262 41.667 0.00 0.00 0.00 3.66
838 844 4.046462 GGGTAAAAGAAAAACGAAGGCAC 58.954 43.478 0.00 0.00 0.00 5.01
840 846 3.068448 TGGGGTAAAAGAAAAACGAAGGC 59.932 43.478 0.00 0.00 0.00 4.35
842 848 7.780008 ATTTTGGGGTAAAAGAAAAACGAAG 57.220 32.000 0.00 0.00 41.26 3.79
846 852 9.398538 AGGTAAATTTTGGGGTAAAAGAAAAAC 57.601 29.630 0.00 0.00 41.26 2.43
851 857 6.550481 ACGAAGGTAAATTTTGGGGTAAAAGA 59.450 34.615 0.00 0.00 41.26 2.52
852 858 6.751157 ACGAAGGTAAATTTTGGGGTAAAAG 58.249 36.000 0.00 0.00 41.26 2.27
856 862 4.002316 CGACGAAGGTAAATTTTGGGGTA 58.998 43.478 0.00 0.00 0.00 3.69
857 863 2.815503 CGACGAAGGTAAATTTTGGGGT 59.184 45.455 0.00 0.00 0.00 4.95
940 2152 1.066286 CAGGAGACAGGAGCAAAGGAG 60.066 57.143 0.00 0.00 0.00 3.69
1073 2285 0.178906 AGGTTTGGGATTTGGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
1115 2327 2.035155 GCGGGCTAGGGTTTTGGT 59.965 61.111 0.00 0.00 0.00 3.67
1164 2376 1.348938 CTCGTCGTAGAGGCTGTCG 59.651 63.158 0.00 0.00 42.81 4.35
1533 2745 3.755628 GCGTAGGTGGAGGTCGCA 61.756 66.667 0.00 0.00 45.01 5.10
1713 2925 1.448497 GACCCGGGTGTCTGTGAAA 59.552 57.895 36.01 0.00 32.39 2.69
1776 2988 1.032657 TCCCTGACTCTAGCACGAGC 61.033 60.000 0.00 0.00 42.56 5.03
1785 2997 1.280421 GACTTGCCATTCCCTGACTCT 59.720 52.381 0.00 0.00 0.00 3.24
1791 3003 2.708325 GAGATAGGACTTGCCATTCCCT 59.292 50.000 0.00 0.00 40.02 4.20
1818 3030 0.957395 GCCCAGGCGTATCCATGATG 60.957 60.000 0.00 0.00 37.29 3.07
1827 3039 0.034574 AATTGACATGCCCAGGCGTA 60.035 50.000 2.37 0.00 45.51 4.42
1951 3163 5.364735 TCAATCCATCAGTTGAGCAGAGATA 59.635 40.000 0.00 0.00 31.24 1.98
1964 3176 4.458295 AGCAAACAGAGTTCAATCCATCAG 59.542 41.667 0.00 0.00 0.00 2.90
1971 3183 6.582636 TCCGATATAGCAAACAGAGTTCAAT 58.417 36.000 0.00 0.00 0.00 2.57
2039 3251 8.526147 GCAATTGCCATATCCTTATCTAACAAT 58.474 33.333 20.06 0.00 34.31 2.71
2040 3252 7.505248 TGCAATTGCCATATCCTTATCTAACAA 59.495 33.333 26.94 0.00 41.18 2.83
2053 3265 5.601583 TCAGACAAATGCAATTGCCATAT 57.398 34.783 26.94 11.75 36.10 1.78
2055 3267 3.965379 TCAGACAAATGCAATTGCCAT 57.035 38.095 26.94 16.95 36.10 4.40
2056 3268 3.747854 TTCAGACAAATGCAATTGCCA 57.252 38.095 26.94 15.46 36.10 4.92
2057 3269 3.998341 ACATTCAGACAAATGCAATTGCC 59.002 39.130 26.94 10.76 39.72 4.52
2058 3270 4.687018 TCACATTCAGACAAATGCAATTGC 59.313 37.500 23.69 23.69 39.72 3.56
2059 3271 6.153756 TCTCACATTCAGACAAATGCAATTG 58.846 36.000 12.99 12.99 39.72 2.32
2060 3272 6.335471 TCTCACATTCAGACAAATGCAATT 57.665 33.333 0.00 0.00 39.72 2.32
2061 3273 5.970317 TCTCACATTCAGACAAATGCAAT 57.030 34.783 0.00 0.00 39.72 3.56
2062 3274 5.970317 ATCTCACATTCAGACAAATGCAA 57.030 34.783 0.00 0.00 39.72 4.08
2063 3275 6.038936 CCATATCTCACATTCAGACAAATGCA 59.961 38.462 0.00 0.00 39.72 3.96
2064 3276 6.436261 CCATATCTCACATTCAGACAAATGC 58.564 40.000 0.00 0.00 39.72 3.56
2065 3277 6.544931 ACCCATATCTCACATTCAGACAAATG 59.455 38.462 0.00 0.00 41.46 2.32
2066 3278 6.666678 ACCCATATCTCACATTCAGACAAAT 58.333 36.000 0.00 0.00 0.00 2.32
2067 3279 6.065976 ACCCATATCTCACATTCAGACAAA 57.934 37.500 0.00 0.00 0.00 2.83
2068 3280 5.698741 ACCCATATCTCACATTCAGACAA 57.301 39.130 0.00 0.00 0.00 3.18
2069 3281 5.189539 TGAACCCATATCTCACATTCAGACA 59.810 40.000 0.00 0.00 0.00 3.41
2070 3282 5.674525 TGAACCCATATCTCACATTCAGAC 58.325 41.667 0.00 0.00 0.00 3.51
2071 3283 5.955961 TGAACCCATATCTCACATTCAGA 57.044 39.130 0.00 0.00 0.00 3.27
2072 3284 6.293698 TGATGAACCCATATCTCACATTCAG 58.706 40.000 0.00 0.00 32.09 3.02
2073 3285 6.251255 TGATGAACCCATATCTCACATTCA 57.749 37.500 0.00 0.00 32.09 2.57
2074 3286 8.853077 TTATGATGAACCCATATCTCACATTC 57.147 34.615 0.00 0.00 32.09 2.67
2075 3287 9.818270 AATTATGATGAACCCATATCTCACATT 57.182 29.630 0.00 0.00 32.09 2.71
2076 3288 9.458727 GAATTATGATGAACCCATATCTCACAT 57.541 33.333 0.00 0.00 32.09 3.21
2077 3289 8.439172 TGAATTATGATGAACCCATATCTCACA 58.561 33.333 0.00 0.00 32.09 3.58
2078 3290 8.853077 TGAATTATGATGAACCCATATCTCAC 57.147 34.615 0.00 0.00 32.09 3.51
2085 3297 8.760735 TGTTCAAATGAATTATGATGAACCCAT 58.239 29.630 17.18 0.00 41.30 4.00
2086 3298 8.131847 TGTTCAAATGAATTATGATGAACCCA 57.868 30.769 17.18 4.59 41.30 4.51
2087 3299 9.090692 CTTGTTCAAATGAATTATGATGAACCC 57.909 33.333 17.18 2.78 41.30 4.11
2088 3300 9.859427 TCTTGTTCAAATGAATTATGATGAACC 57.141 29.630 17.18 6.65 41.30 3.62
2104 3316 5.036117 ACCTAGCAAGTCTCTTGTTCAAA 57.964 39.130 10.49 0.00 0.00 2.69
2107 3319 6.864342 TGTATACCTAGCAAGTCTCTTGTTC 58.136 40.000 10.49 0.00 0.00 3.18
2108 3320 6.852420 TGTATACCTAGCAAGTCTCTTGTT 57.148 37.500 10.49 7.52 0.00 2.83
2117 3329 7.437748 AGCTGTAAAGATGTATACCTAGCAAG 58.562 38.462 0.00 0.00 0.00 4.01
2126 3338 9.151471 GAACTTGTGAAGCTGTAAAGATGTATA 57.849 33.333 0.00 0.00 0.00 1.47
2212 3424 7.171848 TGGTTGTTGTAATACTGATACACACAC 59.828 37.037 0.00 0.00 33.22 3.82
2213 3425 7.171848 GTGGTTGTTGTAATACTGATACACACA 59.828 37.037 0.00 0.00 33.22 3.72
2214 3426 7.171848 TGTGGTTGTTGTAATACTGATACACAC 59.828 37.037 0.00 0.00 33.22 3.82
2231 3443 2.890945 GCTTGGGTAAGATGTGGTTGTT 59.109 45.455 0.00 0.00 35.92 2.83
2232 3444 2.158534 TGCTTGGGTAAGATGTGGTTGT 60.159 45.455 0.00 0.00 35.92 3.32
2260 3472 7.707624 ACCAGTCATGTCATTCATTGTATTT 57.292 32.000 0.00 0.00 34.09 1.40
2261 3473 7.394077 TGAACCAGTCATGTCATTCATTGTATT 59.606 33.333 0.00 0.00 34.09 1.89
2267 3479 5.771666 ACTTTGAACCAGTCATGTCATTCAT 59.228 36.000 0.00 0.00 35.70 2.57
2273 3485 3.123621 CGCTACTTTGAACCAGTCATGTC 59.876 47.826 0.00 0.00 35.70 3.06
2279 3491 2.353803 CCTAGCGCTACTTTGAACCAGT 60.354 50.000 14.45 0.00 0.00 4.00
2296 3508 0.179073 ACAGCCTTGCATACGCCTAG 60.179 55.000 0.00 0.00 37.32 3.02
2323 3535 4.451150 TCGCTTGGGCACTAGGCG 62.451 66.667 12.89 12.89 46.16 5.52
2334 3625 4.379243 ACCCCTGAGCGTCGCTTG 62.379 66.667 22.67 16.57 39.88 4.01
2338 3629 0.108329 AAATACACCCCTGAGCGTCG 60.108 55.000 0.00 0.00 0.00 5.12
2358 3694 4.024302 GCCCAAAATTAGTGTCTATACGCC 60.024 45.833 0.00 0.00 36.76 5.68
2361 3697 7.801716 TCATGCCCAAAATTAGTGTCTATAC 57.198 36.000 0.00 0.00 0.00 1.47
2372 3708 7.986889 GGTTTACTCATTATCATGCCCAAAATT 59.013 33.333 0.00 0.00 0.00 1.82
2374 3710 6.438741 TGGTTTACTCATTATCATGCCCAAAA 59.561 34.615 0.00 0.00 0.00 2.44
2378 3714 4.278419 GGTGGTTTACTCATTATCATGCCC 59.722 45.833 0.00 0.00 0.00 5.36
2381 3717 5.824624 AGCTGGTGGTTTACTCATTATCATG 59.175 40.000 0.00 0.00 0.00 3.07
2382 3718 6.006275 AGCTGGTGGTTTACTCATTATCAT 57.994 37.500 0.00 0.00 0.00 2.45
2383 3719 5.435686 AGCTGGTGGTTTACTCATTATCA 57.564 39.130 0.00 0.00 0.00 2.15
2384 3720 6.480320 CAGTAGCTGGTGGTTTACTCATTATC 59.520 42.308 0.00 0.00 0.00 1.75
2385 3721 6.349300 CAGTAGCTGGTGGTTTACTCATTAT 58.651 40.000 0.00 0.00 0.00 1.28
2425 3762 0.460459 GTCTCCTGTTCTTAGGCGCC 60.460 60.000 21.89 21.89 37.76 6.53
2430 3767 3.246619 GCGTTCAGTCTCCTGTTCTTAG 58.753 50.000 0.00 0.00 39.82 2.18
2468 3805 7.004691 TCTCCTGTTCTTATATAGTGCTAGCA 58.995 38.462 14.93 14.93 0.00 3.49
2469 3806 7.455641 TCTCCTGTTCTTATATAGTGCTAGC 57.544 40.000 8.10 8.10 0.00 3.42
2470 3807 9.461312 AGATCTCCTGTTCTTATATAGTGCTAG 57.539 37.037 0.00 0.00 0.00 3.42
2517 3864 7.568349 TCAGAACTGTTAGATGCAGGATAAAT 58.432 34.615 0.00 0.00 38.22 1.40
2525 3872 3.244526 TGCCTTCAGAACTGTTAGATGCA 60.245 43.478 12.17 12.17 0.00 3.96
2526 3873 3.338249 TGCCTTCAGAACTGTTAGATGC 58.662 45.455 0.00 2.53 0.00 3.91
2528 3875 7.624549 TCTATTTGCCTTCAGAACTGTTAGAT 58.375 34.615 0.00 0.00 0.00 1.98
2608 3956 4.261825 GCAGCACCAACAAACCACTTATAA 60.262 41.667 0.00 0.00 0.00 0.98
2684 4032 1.719600 CTGCCTAGTGTCAACTCTGC 58.280 55.000 0.00 0.00 37.88 4.26
2685 4033 1.001293 TGCTGCCTAGTGTCAACTCTG 59.999 52.381 0.00 0.00 37.88 3.35
2692 4040 2.099141 TCAACATGCTGCCTAGTGTC 57.901 50.000 0.00 0.00 0.00 3.67
2701 4049 5.721876 AACAACACATTTTCAACATGCTG 57.278 34.783 0.00 0.00 0.00 4.41
2862 4216 2.907179 GCCCACTGCCCACCTAGTT 61.907 63.158 0.00 0.00 0.00 2.24
2863 4217 3.330720 GCCCACTGCCCACCTAGT 61.331 66.667 0.00 0.00 0.00 2.57
2864 4218 1.271840 TAAGCCCACTGCCCACCTAG 61.272 60.000 0.00 0.00 42.71 3.02
2865 4219 0.623324 ATAAGCCCACTGCCCACCTA 60.623 55.000 0.00 0.00 42.71 3.08
2866 4220 0.623324 TATAAGCCCACTGCCCACCT 60.623 55.000 0.00 0.00 42.71 4.00
2867 4221 0.478507 ATATAAGCCCACTGCCCACC 59.521 55.000 0.00 0.00 42.71 4.61
2868 4222 3.502123 TTATATAAGCCCACTGCCCAC 57.498 47.619 0.00 0.00 42.71 4.61
2869 4223 4.469657 CTTTTATATAAGCCCACTGCCCA 58.530 43.478 0.00 0.00 42.71 5.36
2870 4224 3.826729 CCTTTTATATAAGCCCACTGCCC 59.173 47.826 0.00 0.00 42.71 5.36
2871 4225 3.255888 GCCTTTTATATAAGCCCACTGCC 59.744 47.826 0.00 0.00 42.71 4.85
2872 4226 3.255888 GGCCTTTTATATAAGCCCACTGC 59.744 47.826 11.46 3.13 41.71 4.40
2873 4227 4.729868 AGGCCTTTTATATAAGCCCACTG 58.270 43.478 16.65 0.00 0.00 3.66
2874 4228 5.403558 AAGGCCTTTTATATAAGCCCACT 57.596 39.130 13.78 3.84 0.00 4.00
2875 4229 9.475620 AATATAAGGCCTTTTATATAAGCCCAC 57.524 33.333 26.08 1.96 35.95 4.61
2876 4230 9.695155 GAATATAAGGCCTTTTATATAAGCCCA 57.305 33.333 26.08 0.00 35.95 5.36
2877 4231 9.922477 AGAATATAAGGCCTTTTATATAAGCCC 57.078 33.333 26.08 9.10 35.95 5.19
2887 4241 8.797438 GCAGCTTATAAGAATATAAGGCCTTTT 58.203 33.333 26.08 19.03 45.91 2.27
2888 4242 7.944554 TGCAGCTTATAAGAATATAAGGCCTTT 59.055 33.333 26.08 13.97 45.91 3.11
2889 4243 7.461749 TGCAGCTTATAAGAATATAAGGCCTT 58.538 34.615 24.18 24.18 45.91 4.35
2890 4244 7.020827 TGCAGCTTATAAGAATATAAGGCCT 57.979 36.000 16.85 0.00 45.91 5.19
2891 4245 7.337942 ACATGCAGCTTATAAGAATATAAGGCC 59.662 37.037 16.85 0.00 45.91 5.19
2892 4246 8.273780 ACATGCAGCTTATAAGAATATAAGGC 57.726 34.615 16.85 11.25 45.91 4.35
2899 4253 8.571336 GGTCATTAACATGCAGCTTATAAGAAT 58.429 33.333 16.85 0.74 0.00 2.40
2900 4254 7.775093 AGGTCATTAACATGCAGCTTATAAGAA 59.225 33.333 16.85 0.00 0.00 2.52
2901 4255 7.282585 AGGTCATTAACATGCAGCTTATAAGA 58.717 34.615 16.85 0.00 0.00 2.10
2902 4256 7.308229 GGAGGTCATTAACATGCAGCTTATAAG 60.308 40.741 8.20 8.20 29.49 1.73
2903 4257 6.486657 GGAGGTCATTAACATGCAGCTTATAA 59.513 38.462 0.00 0.00 29.49 0.98
2904 4258 5.997746 GGAGGTCATTAACATGCAGCTTATA 59.002 40.000 0.00 0.00 29.49 0.98
2905 4259 4.823989 GGAGGTCATTAACATGCAGCTTAT 59.176 41.667 0.00 0.00 29.49 1.73
2906 4260 4.199310 GGAGGTCATTAACATGCAGCTTA 58.801 43.478 0.00 0.00 29.49 3.09
2907 4261 3.019564 GGAGGTCATTAACATGCAGCTT 58.980 45.455 0.00 0.00 29.49 3.74
2908 4262 2.025981 TGGAGGTCATTAACATGCAGCT 60.026 45.455 0.00 0.00 34.94 4.24
2909 4263 2.368439 TGGAGGTCATTAACATGCAGC 58.632 47.619 0.00 0.00 34.94 5.25
2911 4265 3.719268 ACTGGAGGTCATTAACATGCA 57.281 42.857 0.00 0.00 37.69 3.96
2912 4266 4.572389 CAGTACTGGAGGTCATTAACATGC 59.428 45.833 15.49 0.00 0.00 4.06
2913 4267 5.734720 ACAGTACTGGAGGTCATTAACATG 58.265 41.667 26.12 0.00 34.19 3.21
2914 4268 6.374417 AACAGTACTGGAGGTCATTAACAT 57.626 37.500 26.12 0.00 34.19 2.71
2915 4269 5.818678 AACAGTACTGGAGGTCATTAACA 57.181 39.130 26.12 0.00 34.19 2.41
2916 4270 6.708949 TGAAAACAGTACTGGAGGTCATTAAC 59.291 38.462 26.12 8.18 34.19 2.01
2917 4271 6.708949 GTGAAAACAGTACTGGAGGTCATTAA 59.291 38.462 26.12 1.96 34.19 1.40
2918 4272 6.042781 AGTGAAAACAGTACTGGAGGTCATTA 59.957 38.462 26.12 1.67 34.19 1.90
2919 4273 5.063880 GTGAAAACAGTACTGGAGGTCATT 58.936 41.667 26.12 7.28 34.19 2.57
2920 4274 4.348168 AGTGAAAACAGTACTGGAGGTCAT 59.652 41.667 26.12 10.79 34.19 3.06
2927 4281 6.618287 TCATTTCAGTGAAAACAGTACTGG 57.382 37.500 26.12 9.07 41.54 4.00
3044 4398 1.872952 GAATGCTGGCATGTACGCATA 59.127 47.619 11.00 0.00 41.80 3.14
3049 4403 1.027357 CTGGGAATGCTGGCATGTAC 58.973 55.000 8.91 4.41 36.68 2.90
3137 4492 6.688578 TCTCAGTGTTTACCTACTCATCAAC 58.311 40.000 0.00 0.00 0.00 3.18
3178 4533 3.873952 CGATGGGAAGTCTTTCTTGGATC 59.126 47.826 0.00 0.00 36.40 3.36
3289 4644 4.396790 TCTGTCAACCTGTAAAACCACAAC 59.603 41.667 0.00 0.00 0.00 3.32
3333 4688 1.039856 AATACGCATCATTTGGGGGC 58.960 50.000 0.00 0.00 42.37 5.80
3438 4793 1.335145 AGCAAACATTTCCAGCAGCT 58.665 45.000 0.00 0.00 0.00 4.24
3498 4853 7.598118 TGAATCTTCAAATAAAGATGCGCAAAA 59.402 29.630 17.11 0.00 43.53 2.44
3564 4919 5.690865 TGGTCATAATACAAATCTCCCCAC 58.309 41.667 0.00 0.00 0.00 4.61
3627 4982 7.568349 TGAACTCAATGAATGACCTATTAGCT 58.432 34.615 0.00 0.00 33.47 3.32
3704 5059 5.864474 TCAGCGAGAGTTACTTCAAGAATTC 59.136 40.000 0.00 0.00 0.00 2.17
3715 5070 1.272769 ACCCAAGTCAGCGAGAGTTAC 59.727 52.381 2.58 0.00 37.81 2.50
3828 5183 5.390613 GGGATGTTTTTCACTAACATGTCG 58.609 41.667 0.00 0.00 44.05 4.35
3867 5222 3.058293 TGTGTTCTATTTTCCTTGCAGCG 60.058 43.478 0.00 0.00 0.00 5.18
4123 5478 0.249120 CGTGCCTGATAGACCCACAA 59.751 55.000 0.00 0.00 0.00 3.33
4269 5624 2.892784 AGGTATTGAAGCGTAGAGGC 57.107 50.000 0.00 0.00 0.00 4.70
4299 5654 2.117865 AGAGGCTCAGCTGCTATCTTT 58.882 47.619 18.26 0.00 0.00 2.52
4335 5690 2.755103 CAGACCTTCCACCATTTTAGGC 59.245 50.000 0.00 0.00 0.00 3.93
4410 5765 4.174009 CAGTCCCAAGTATAGTGTGTTCG 58.826 47.826 0.00 0.00 0.00 3.95
4452 5807 4.968080 AGCTCTCTGAGGTCCTTCATTATT 59.032 41.667 4.59 0.00 35.30 1.40
4505 5860 5.469760 AGGAAAAATAAACCAAGTGCATTGC 59.530 36.000 0.46 0.46 37.60 3.56
4519 5874 9.196139 TCTGGTTCAAAAGAGAAGGAAAAATAA 57.804 29.630 0.00 0.00 0.00 1.40
4533 5888 8.330302 CAGCAAAGTAAAAATCTGGTTCAAAAG 58.670 33.333 0.00 0.00 0.00 2.27
4541 5896 4.525912 AGGCAGCAAAGTAAAAATCTGG 57.474 40.909 0.00 0.00 0.00 3.86
4561 5916 3.376859 TCTGCAACCTGTGTACAAACAAG 59.623 43.478 0.00 0.00 37.36 3.16
4710 6067 7.379529 GTGTGTTTGTTTACCATGATGAAGAAG 59.620 37.037 0.00 0.00 0.00 2.85
4752 6109 2.997980 TGTCACAGACAAAGAAAGCCA 58.002 42.857 0.00 0.00 39.78 4.75
4770 6127 2.554032 GGTTCAGCTAACTGCATGTTGT 59.446 45.455 10.59 0.00 44.10 3.32
4771 6128 2.553602 TGGTTCAGCTAACTGCATGTTG 59.446 45.455 10.59 0.74 44.10 3.33
4846 6203 3.135530 AGTCAGTGACTTCTTTCTGCCTT 59.864 43.478 20.34 0.00 40.28 4.35
4864 6221 0.531974 AGCGTTGGCGAAAGAAGTCA 60.532 50.000 0.00 0.00 46.35 3.41
4941 6298 3.503363 TCAGTAAGCAGTTTGCCATCTTG 59.497 43.478 0.00 0.00 46.52 3.02
4968 6325 6.795144 AAATGGAAATATCCTGCACAATGA 57.205 33.333 0.00 0.00 46.70 2.57
4976 6333 7.829725 TCAGTCAACAAAATGGAAATATCCTG 58.170 34.615 0.00 0.00 46.70 3.86
4980 6337 7.657336 ACGTTCAGTCAACAAAATGGAAATAT 58.343 30.769 0.00 0.00 34.20 1.28
4981 6338 7.033530 ACGTTCAGTCAACAAAATGGAAATA 57.966 32.000 0.00 0.00 34.20 1.40
4982 6339 5.901552 ACGTTCAGTCAACAAAATGGAAAT 58.098 33.333 0.00 0.00 34.20 2.17
4989 6503 8.428186 AAGTAAGATACGTTCAGTCAACAAAA 57.572 30.769 0.00 0.00 34.20 2.44
4995 6509 6.741109 TGTCAAAGTAAGATACGTTCAGTCA 58.259 36.000 0.00 0.00 0.00 3.41
5009 6523 2.375174 AGGACCCTGCATGTCAAAGTAA 59.625 45.455 15.85 0.00 34.36 2.24
5020 6534 3.197766 CAGTAGAATGTTAGGACCCTGCA 59.802 47.826 0.00 0.00 0.00 4.41
5021 6535 3.432326 CCAGTAGAATGTTAGGACCCTGC 60.432 52.174 0.00 0.00 0.00 4.85
5040 6554 3.056536 TCAACCGAAAGAGAGTCATCCAG 60.057 47.826 0.00 0.00 0.00 3.86
5152 6666 7.444299 ACAAAATGATTAAGGCACTGACAAAT 58.556 30.769 0.00 0.00 40.86 2.32
5167 6681 6.496911 AGGTTAGGGCAGTAAACAAAATGATT 59.503 34.615 0.00 0.00 0.00 2.57
5168 6682 6.016555 AGGTTAGGGCAGTAAACAAAATGAT 58.983 36.000 0.00 0.00 0.00 2.45
5176 6694 2.305052 ACCTGAGGTTAGGGCAGTAAAC 59.695 50.000 0.00 0.00 42.35 2.01
5208 6726 0.547712 ACAAGGGGCCTTCTCTAGCA 60.548 55.000 0.84 0.00 33.42 3.49
5263 6781 5.422666 TCTGGTGCGATATTTGCATTTAG 57.577 39.130 6.83 6.36 45.34 1.85
5280 6798 1.150536 ACGGTGCAATGGTTCTGGT 59.849 52.632 0.00 0.00 0.00 4.00
5301 6819 1.456705 GGGGATTATTTGGCCGCCA 60.457 57.895 8.43 8.43 0.00 5.69
5304 6822 1.032014 CTGTGGGGATTATTTGGCCG 58.968 55.000 0.00 0.00 0.00 6.13
5328 6846 0.537188 ATGCTGAGTAGACAACCCGG 59.463 55.000 0.00 0.00 0.00 5.73
5352 6870 4.220821 TCCATAAGTCGAGGATTAGCCATC 59.779 45.833 0.00 0.00 40.02 3.51
5370 6888 6.998074 CCTCAATGTAATAAACAGGCTCCATA 59.002 38.462 0.00 0.00 42.70 2.74
5450 6969 4.285775 TCAGACCAGGTCATCAAATACACA 59.714 41.667 22.31 0.00 34.60 3.72
5523 7042 5.527951 CGACAGGACCGTATATATAGCAGAT 59.472 44.000 0.00 0.00 0.00 2.90
5559 7078 1.405526 GGTACATCGGCTGTCACATGT 60.406 52.381 0.00 0.00 39.39 3.21
5586 7105 3.517500 TGACAACATATACTGGAGTGCCA 59.482 43.478 0.00 0.00 43.47 4.92
5614 7133 5.482908 TCAGAAGAAATAGAGCACACTTCC 58.517 41.667 0.00 0.00 35.73 3.46
5982 7511 0.247185 CTGGAAAATGGGCGTGCATT 59.753 50.000 0.00 0.00 0.00 3.56
6219 7794 8.417106 AGTCTACAATGATCTGTTACGAATCAT 58.583 33.333 6.49 6.49 33.84 2.45
6220 7795 7.702348 CAGTCTACAATGATCTGTTACGAATCA 59.298 37.037 0.00 2.73 0.00 2.57
6221 7796 7.915923 TCAGTCTACAATGATCTGTTACGAATC 59.084 37.037 0.00 0.00 0.00 2.52
6222 7797 7.772166 TCAGTCTACAATGATCTGTTACGAAT 58.228 34.615 0.00 0.00 0.00 3.34
6223 7798 7.094334 ACTCAGTCTACAATGATCTGTTACGAA 60.094 37.037 0.00 0.00 0.00 3.85
6224 7799 6.374613 ACTCAGTCTACAATGATCTGTTACGA 59.625 38.462 0.00 0.00 0.00 3.43
6225 7800 6.556212 ACTCAGTCTACAATGATCTGTTACG 58.444 40.000 0.00 0.00 0.00 3.18
6286 7861 3.686726 ACTAACTGGTTAGACGACGTAGG 59.313 47.826 22.39 0.00 43.90 3.18
6427 8002 1.172812 AACTTGGAAAGGTGCTCGGC 61.173 55.000 0.00 0.00 46.40 5.54
6440 8015 5.181748 CAGAACTATCCTCCAGAAACTTGG 58.818 45.833 0.00 0.00 39.70 3.61
6529 8104 2.289694 CCACCTCACAGGAGTTTACCAG 60.290 54.545 0.00 0.00 37.67 4.00
6540 8115 5.111989 CAATAGACATACACCACCTCACAG 58.888 45.833 0.00 0.00 0.00 3.66
6562 8137 1.627834 TGACACAGCATGACCATACCA 59.372 47.619 0.00 0.00 39.69 3.25
6564 8139 2.932614 GTCTGACACAGCATGACCATAC 59.067 50.000 2.24 0.00 39.69 2.39
6646 8221 3.442076 ACAGAGGGGGTAGTAACAGAAG 58.558 50.000 0.00 0.00 0.00 2.85
6657 8232 2.606826 GGAACGGACAGAGGGGGT 60.607 66.667 0.00 0.00 0.00 4.95
6665 8240 2.769663 ACTAGGCAATATGGAACGGACA 59.230 45.455 0.00 0.00 0.00 4.02
6668 8243 3.753294 AGACTAGGCAATATGGAACGG 57.247 47.619 0.00 0.00 0.00 4.44
6670 8245 7.573968 AATGAAAGACTAGGCAATATGGAAC 57.426 36.000 0.00 0.00 0.00 3.62
6671 8246 7.285401 GGAAATGAAAGACTAGGCAATATGGAA 59.715 37.037 0.00 0.00 0.00 3.53
6673 8248 6.293626 CGGAAATGAAAGACTAGGCAATATGG 60.294 42.308 0.00 0.00 0.00 2.74
6674 8249 6.293626 CCGGAAATGAAAGACTAGGCAATATG 60.294 42.308 0.00 0.00 0.00 1.78
6675 8250 5.765182 CCGGAAATGAAAGACTAGGCAATAT 59.235 40.000 0.00 0.00 0.00 1.28
6676 8251 5.123227 CCGGAAATGAAAGACTAGGCAATA 58.877 41.667 0.00 0.00 0.00 1.90
6677 8252 3.947834 CCGGAAATGAAAGACTAGGCAAT 59.052 43.478 0.00 0.00 0.00 3.56
6678 8253 3.343617 CCGGAAATGAAAGACTAGGCAA 58.656 45.455 0.00 0.00 0.00 4.52
6679 8254 2.939640 GCCGGAAATGAAAGACTAGGCA 60.940 50.000 5.05 0.00 41.46 4.75
6680 8255 1.671328 GCCGGAAATGAAAGACTAGGC 59.329 52.381 5.05 0.00 35.00 3.93
6681 8256 2.985896 TGCCGGAAATGAAAGACTAGG 58.014 47.619 5.05 0.00 0.00 3.02
6682 8257 3.242870 GCATGCCGGAAATGAAAGACTAG 60.243 47.826 18.79 0.00 0.00 2.57
6683 8258 2.682856 GCATGCCGGAAATGAAAGACTA 59.317 45.455 18.79 0.00 0.00 2.59
6684 8259 1.474077 GCATGCCGGAAATGAAAGACT 59.526 47.619 18.79 0.00 0.00 3.24
6685 8260 1.202114 TGCATGCCGGAAATGAAAGAC 59.798 47.619 16.68 4.13 0.00 3.01
6686 8261 1.543607 TGCATGCCGGAAATGAAAGA 58.456 45.000 16.68 0.00 0.00 2.52
6687 8262 2.264813 CTTGCATGCCGGAAATGAAAG 58.735 47.619 18.79 18.79 34.99 2.62
6688 8263 1.067000 CCTTGCATGCCGGAAATGAAA 60.067 47.619 16.68 14.25 0.00 2.69
6689 8264 0.531657 CCTTGCATGCCGGAAATGAA 59.468 50.000 16.68 7.81 0.00 2.57
6690 8265 1.947597 GCCTTGCATGCCGGAAATGA 61.948 55.000 23.01 0.00 0.00 2.57
6691 8266 1.519898 GCCTTGCATGCCGGAAATG 60.520 57.895 23.01 9.68 0.00 2.32
6692 8267 1.983481 TGCCTTGCATGCCGGAAAT 60.983 52.632 23.01 0.00 31.71 2.17
6693 8268 2.599875 TGCCTTGCATGCCGGAAA 60.600 55.556 23.01 7.56 31.71 3.13
6709 8284 3.090210 TGGGCCCTTATGCATCATATG 57.910 47.619 25.70 0.00 0.00 1.78
6710 8285 4.341863 AATGGGCCCTTATGCATCATAT 57.658 40.909 25.70 0.00 0.00 1.78
6711 8286 3.831642 AATGGGCCCTTATGCATCATA 57.168 42.857 25.70 0.00 0.00 2.15
6712 8287 2.635915 CAAATGGGCCCTTATGCATCAT 59.364 45.455 25.70 0.54 0.00 2.45
6713 8288 2.040939 CAAATGGGCCCTTATGCATCA 58.959 47.619 25.70 0.00 0.00 3.07
6714 8289 1.345415 CCAAATGGGCCCTTATGCATC 59.655 52.381 25.70 0.00 0.00 3.91
6715 8290 1.344291 ACCAAATGGGCCCTTATGCAT 60.344 47.619 25.70 3.79 42.05 3.96
6740 8315 0.628668 AAGCTCCCATTCCCCCTCAT 60.629 55.000 0.00 0.00 0.00 2.90
6741 8316 0.045623 TAAGCTCCCATTCCCCCTCA 59.954 55.000 0.00 0.00 0.00 3.86
6765 8343 6.727824 ATCAGTGGACTTTTAATCTGTTCG 57.272 37.500 0.00 0.00 0.00 3.95
6825 8403 7.056635 TCATGGAAGGAAATAGATGGAAGTTC 58.943 38.462 0.00 0.00 0.00 3.01
6846 8424 2.133281 TCCAGAAAGGCCACATCATG 57.867 50.000 5.01 0.00 37.29 3.07
6847 8425 3.393426 AATCCAGAAAGGCCACATCAT 57.607 42.857 5.01 0.00 37.29 2.45
6848 8426 2.905415 AATCCAGAAAGGCCACATCA 57.095 45.000 5.01 0.00 37.29 3.07
6849 8427 4.273318 AGTTAATCCAGAAAGGCCACATC 58.727 43.478 5.01 0.00 37.29 3.06
6850 8428 4.322057 AGTTAATCCAGAAAGGCCACAT 57.678 40.909 5.01 0.00 37.29 3.21
6851 8429 3.806949 AGTTAATCCAGAAAGGCCACA 57.193 42.857 5.01 0.00 37.29 4.17
6852 8430 4.522789 TGAAAGTTAATCCAGAAAGGCCAC 59.477 41.667 5.01 0.00 37.29 5.01
6853 8431 4.735369 TGAAAGTTAATCCAGAAAGGCCA 58.265 39.130 5.01 0.00 37.29 5.36
6854 8432 5.418840 TGATGAAAGTTAATCCAGAAAGGCC 59.581 40.000 0.00 0.00 37.29 5.19
6855 8433 6.515272 TGATGAAAGTTAATCCAGAAAGGC 57.485 37.500 0.00 0.00 37.29 4.35
6939 8517 2.926329 AGGGTCTGGGTGGACAAATAAT 59.074 45.455 0.00 0.00 37.91 1.28
6974 8552 2.146342 GGACGTGCATGGATATGAAGG 58.854 52.381 11.36 0.00 36.36 3.46
6983 8561 3.433274 GTGTATATGATGGACGTGCATGG 59.567 47.826 28.10 0.00 0.00 3.66
7103 8685 6.477688 GGAGGCATTTGATTCATTTGTGTATG 59.522 38.462 0.00 0.00 0.00 2.39
7131 8713 1.696832 GAGGATCAACGAGCGCAACC 61.697 60.000 11.47 0.00 33.17 3.77
7141 8723 7.596494 TGATCAACATGAAAAAGAGGATCAAC 58.404 34.615 0.00 0.00 37.53 3.18
7167 8749 3.381590 GGATTGGGAATACAAGAAGTGGC 59.618 47.826 0.00 0.00 33.23 5.01
7178 8760 4.103153 CACTAGCCTCTTGGATTGGGAATA 59.897 45.833 0.00 0.00 29.50 1.75
7218 8800 1.998315 CGGCAACATTGAGAGAGTCAG 59.002 52.381 0.00 0.00 36.21 3.51
7219 8801 1.941209 GCGGCAACATTGAGAGAGTCA 60.941 52.381 0.00 0.00 0.00 3.41
7234 8816 0.107848 GGTAGCTTTAGAAGGCGGCA 60.108 55.000 13.08 0.00 0.00 5.69
7236 8818 2.622064 ATGGTAGCTTTAGAAGGCGG 57.378 50.000 0.00 0.00 0.00 6.13
7245 8827 8.071177 AGAGAAATATGCAAAATGGTAGCTTT 57.929 30.769 0.00 0.00 0.00 3.51
7286 8868 9.305925 GACAAGTTGAACATTGAGAAAGAAAAT 57.694 29.630 10.54 0.00 0.00 1.82
7289 8871 7.630242 AGACAAGTTGAACATTGAGAAAGAA 57.370 32.000 10.54 0.00 0.00 2.52
7293 8875 7.250569 GTGAAAGACAAGTTGAACATTGAGAA 58.749 34.615 10.54 0.00 0.00 2.87
7306 8888 2.297597 CGAGAGAGGGTGAAAGACAAGT 59.702 50.000 0.00 0.00 0.00 3.16
7328 8910 0.389757 GGAAGAGGATGGAGTACGGC 59.610 60.000 0.00 0.00 0.00 5.68
7354 8936 5.897050 AGAGTTAGAGGCTCTTCGTAAATG 58.103 41.667 24.13 0.00 40.08 2.32
7358 8940 5.356291 AGTAGAGTTAGAGGCTCTTCGTA 57.644 43.478 24.13 0.54 42.63 3.43
7360 8942 4.879545 AGAAGTAGAGTTAGAGGCTCTTCG 59.120 45.833 24.13 0.00 42.63 3.79
7368 8950 8.241367 GGAGTTGAAGAAGAAGTAGAGTTAGAG 58.759 40.741 0.00 0.00 0.00 2.43
7370 8952 8.117813 AGGAGTTGAAGAAGAAGTAGAGTTAG 57.882 38.462 0.00 0.00 0.00 2.34
7373 8955 6.239458 CCAAGGAGTTGAAGAAGAAGTAGAGT 60.239 42.308 0.00 0.00 35.46 3.24
7410 8992 2.634940 CTCTTCATCATATGGACGGGGT 59.365 50.000 2.13 0.00 0.00 4.95
7411 8993 2.899900 TCTCTTCATCATATGGACGGGG 59.100 50.000 2.13 0.00 0.00 5.73
7432 9014 5.477637 GGAGTTGAAGAAGTAGAGGTACAGT 59.522 44.000 0.00 0.00 0.00 3.55
7469 9051 5.995282 TGTTCATCATATGGACGGGTATTTC 59.005 40.000 2.13 0.00 41.85 2.17
7517 9101 1.000612 GGGAGAAGGAGAGGGTCGT 59.999 63.158 0.00 0.00 0.00 4.34
7520 9104 0.494095 AAGTGGGAGAAGGAGAGGGT 59.506 55.000 0.00 0.00 0.00 4.34
7523 9107 3.558109 GGAAACAAGTGGGAGAAGGAGAG 60.558 52.174 0.00 0.00 0.00 3.20
7524 9108 2.372172 GGAAACAAGTGGGAGAAGGAGA 59.628 50.000 0.00 0.00 0.00 3.71
7537 9121 1.333619 CGACAAGTGGTGGGAAACAAG 59.666 52.381 0.00 0.00 0.00 3.16
7548 9132 0.035458 AAAGAGGAGCCGACAAGTGG 59.965 55.000 0.00 0.00 0.00 4.00
7552 9136 0.889186 GCCAAAAGAGGAGCCGACAA 60.889 55.000 0.00 0.00 0.00 3.18
7555 9139 1.302511 GTGCCAAAAGAGGAGCCGA 60.303 57.895 0.00 0.00 0.00 5.54
7558 9142 1.600916 ACCGTGCCAAAAGAGGAGC 60.601 57.895 0.00 0.00 0.00 4.70
7565 9149 1.944024 CTACAAGTCACCGTGCCAAAA 59.056 47.619 0.00 0.00 0.00 2.44
7573 9157 1.191647 GCACGAAACTACAAGTCACCG 59.808 52.381 0.00 0.00 0.00 4.94
7587 9171 2.430244 GAGGAGCGAACGCACGAA 60.430 61.111 20.66 0.00 44.88 3.85
7589 9173 3.989698 ATGGAGGAGCGAACGCACG 62.990 63.158 20.66 0.00 44.88 5.34
7596 9180 0.392998 GGAGCAAAATGGAGGAGCGA 60.393 55.000 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.