Multiple sequence alignment - TraesCS7A01G380000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G380000 chr7A 100.000 5236 0 0 1 5236 555626301 555621066 0.000000e+00 9670
1 TraesCS7A01G380000 chr7A 86.931 2242 245 25 1 2220 555436887 555439102 0.000000e+00 2473
2 TraesCS7A01G380000 chr7A 85.286 1733 240 9 3264 4984 555439929 555441658 0.000000e+00 1773
3 TraesCS7A01G380000 chr7B 92.227 2470 175 9 2222 4685 516444388 516441930 0.000000e+00 3482
4 TraesCS7A01G380000 chr7B 91.767 1919 148 9 311 2220 516446369 516444452 0.000000e+00 2660
5 TraesCS7A01G380000 chr7B 84.674 1840 260 17 3155 4981 514255146 514256976 0.000000e+00 1816
6 TraesCS7A01G380000 chr7B 85.386 1348 148 27 1 1336 514248071 514249381 0.000000e+00 1352
7 TraesCS7A01G380000 chr7B 84.316 899 128 10 1328 2219 514249848 514250740 0.000000e+00 867
8 TraesCS7A01G380000 chr7B 92.395 263 16 1 1 259 516446628 516446366 6.400000e-99 372
9 TraesCS7A01G380000 chr7B 86.058 208 20 7 2290 2494 514253501 514253702 1.140000e-51 215
10 TraesCS7A01G380000 chr7D 92.836 2331 141 12 2222 4545 486729831 486727520 0.000000e+00 3356
11 TraesCS7A01G380000 chr7D 91.464 2015 162 8 215 2220 486731908 486729895 0.000000e+00 2760
12 TraesCS7A01G380000 chr7D 86.566 2248 242 30 1 2220 486305998 486308213 0.000000e+00 2423
13 TraesCS7A01G380000 chr7D 85.551 1841 250 11 3155 4984 486308911 486310746 0.000000e+00 1912
14 TraesCS7A01G380000 chr7D 88.578 429 46 3 3155 3582 581698496 581698922 7.770000e-143 518
15 TraesCS7A01G380000 chr7D 88.345 429 47 3 3155 3582 119753476 119753902 3.620000e-141 512
16 TraesCS7A01G380000 chr7D 88.860 386 38 2 4537 4918 486676623 486676239 2.210000e-128 470
17 TraesCS7A01G380000 chr7D 96.443 253 8 1 4984 5236 479051856 479052107 2.920000e-112 416
18 TraesCS7A01G380000 chr7D 72.640 1038 257 21 2493 3514 577018791 577019817 8.460000e-83 318
19 TraesCS7A01G380000 chr7D 85.130 269 35 4 2222 2489 486308277 486308541 2.400000e-68 270
20 TraesCS7A01G380000 chr7D 92.308 169 12 1 1 168 486732081 486731913 6.780000e-59 239
21 TraesCS7A01G380000 chr5D 88.345 429 47 3 3155 3582 173558908 173559334 3.620000e-141 512
22 TraesCS7A01G380000 chr4D 88.345 429 47 3 3155 3582 150602362 150602788 3.620000e-141 512
23 TraesCS7A01G380000 chr4A 96.850 254 7 1 4983 5236 21835688 21835436 1.740000e-114 424
24 TraesCS7A01G380000 chr2D 96.109 257 9 1 4980 5236 384393176 384392921 8.110000e-113 418
25 TraesCS7A01G380000 chr2D 96.443 253 8 1 4984 5236 151842289 151842038 2.920000e-112 416
26 TraesCS7A01G380000 chr2D 95.385 260 10 2 4978 5236 17555820 17555562 3.770000e-111 412
27 TraesCS7A01G380000 chr1A 96.457 254 8 1 4983 5236 497021176 497020924 8.110000e-113 418
28 TraesCS7A01G380000 chr1A 96.443 253 8 1 4984 5236 447286825 447286574 2.920000e-112 416
29 TraesCS7A01G380000 chr1A 73.293 981 234 23 2498 3461 590464588 590465557 8.400000e-88 335
30 TraesCS7A01G380000 chr3D 96.443 253 8 1 4984 5236 238584485 238584234 2.920000e-112 416
31 TraesCS7A01G380000 chr3D 71.969 1031 260 23 2501 3514 527072908 527073926 5.160000e-70 276
32 TraesCS7A01G380000 chr2A 96.443 253 8 1 4984 5236 639076432 639076181 2.920000e-112 416
33 TraesCS7A01G380000 chr3B 74.163 836 196 18 2498 3320 765717874 765718702 3.910000e-86 329
34 TraesCS7A01G380000 chr5B 72.798 1033 250 24 2501 3515 551296206 551297225 6.540000e-84 322
35 TraesCS7A01G380000 chr1D 72.621 1030 255 21 2501 3514 436632369 436633387 1.090000e-81 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G380000 chr7A 555621066 555626301 5235 True 9670.000000 9670 100.000000 1 5236 1 chr7A.!!$R1 5235
1 TraesCS7A01G380000 chr7A 555436887 555441658 4771 False 2123.000000 2473 86.108500 1 4984 2 chr7A.!!$F1 4983
2 TraesCS7A01G380000 chr7B 516441930 516446628 4698 True 2171.333333 3482 92.129667 1 4685 3 chr7B.!!$R1 4684
3 TraesCS7A01G380000 chr7B 514248071 514256976 8905 False 1062.500000 1816 85.108500 1 4981 4 chr7B.!!$F1 4980
4 TraesCS7A01G380000 chr7D 486727520 486732081 4561 True 2118.333333 3356 92.202667 1 4545 3 chr7D.!!$R2 4544
5 TraesCS7A01G380000 chr7D 486305998 486310746 4748 False 1535.000000 2423 85.749000 1 4984 3 chr7D.!!$F5 4983
6 TraesCS7A01G380000 chr7D 577018791 577019817 1026 False 318.000000 318 72.640000 2493 3514 1 chr7D.!!$F3 1021
7 TraesCS7A01G380000 chr1A 590464588 590465557 969 False 335.000000 335 73.293000 2498 3461 1 chr1A.!!$F1 963
8 TraesCS7A01G380000 chr3D 527072908 527073926 1018 False 276.000000 276 71.969000 2501 3514 1 chr3D.!!$F1 1013
9 TraesCS7A01G380000 chr3B 765717874 765718702 828 False 329.000000 329 74.163000 2498 3320 1 chr3B.!!$F1 822
10 TraesCS7A01G380000 chr5B 551296206 551297225 1019 False 322.000000 322 72.798000 2501 3515 1 chr5B.!!$F1 1014
11 TraesCS7A01G380000 chr1D 436632369 436633387 1018 False 315.000000 315 72.621000 2501 3514 1 chr1D.!!$F1 1013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 990 0.107703 TTGCCCAACTAGCAGATCCG 60.108 55.0 0.00 0.0 42.17 4.18 F
1762 2256 0.034896 AACCGATTGCGTGAGGTTCT 59.965 50.0 1.35 0.0 42.74 3.01 F
1806 2300 0.107165 GGGTCATTGGCTACCTGGAC 60.107 60.0 0.00 0.0 35.97 4.02 F
2356 5551 0.174617 GTCTCTTCCTTCCAGCTCCG 59.825 60.0 0.00 0.0 0.00 4.63 F
4055 8726 0.950555 GAGCATTGCTGGTCGTGTCA 60.951 55.0 17.51 0.0 39.88 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2657 0.323957 GCGTCCCTGACCTAGGTTTT 59.676 55.0 17.53 0.00 45.80 2.43 R
2991 7616 0.122435 GGGATATGGGGGATGGGGTA 59.878 60.0 0.00 0.00 0.00 3.69 R
3596 8267 0.171903 CCATTGTGTTAGGCTGCAGC 59.828 55.0 30.88 30.88 41.14 5.25 R
4133 8804 0.043334 ACCCTCTAGCAGTCCATGGT 59.957 55.0 12.58 0.00 43.56 3.55 R
5037 9726 0.250338 AGCTCCTCGTTGGGTTTGAC 60.250 55.0 0.00 0.00 36.20 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.070018 AGGAAGCAGATGTTCGTTTCTG 58.930 45.455 0.00 0.00 41.84 3.02
32 33 2.290641 GCAGATGTTCGTTTCTGTTGGT 59.709 45.455 2.30 0.00 41.16 3.67
189 191 6.385176 TCCTATTGTGAGATCAATCAGAGGTT 59.615 38.462 0.00 0.00 38.68 3.50
191 193 4.115401 TGTGAGATCAATCAGAGGTTCG 57.885 45.455 0.00 0.00 0.00 3.95
252 258 0.679505 ACACTGGTCACGTGTGCTAT 59.320 50.000 16.51 0.00 43.44 2.97
393 400 1.227527 TGGATAGCGTTGCATCCCG 60.228 57.895 13.77 0.00 36.30 5.14
458 467 4.753516 TTCTTATCTTCATCAAGGGCGA 57.246 40.909 0.00 0.00 0.00 5.54
459 468 4.963318 TCTTATCTTCATCAAGGGCGAT 57.037 40.909 0.00 0.00 0.00 4.58
582 591 3.259876 TCACTACCAAGCGACCAGTAATT 59.740 43.478 0.00 0.00 0.00 1.40
780 796 4.453480 AGGGTTTTCTCAATGACTCCAA 57.547 40.909 0.00 0.00 0.00 3.53
803 819 7.770897 CCAAGATTACTAGCCAACAACTAATCT 59.229 37.037 0.00 0.00 34.06 2.40
862 881 6.328641 TGTTAGTTAGTCAACTCCAGAGAC 57.671 41.667 0.70 0.00 44.04 3.36
913 932 4.211374 CGTGCACTAGACTACAAAGCTTTT 59.789 41.667 16.19 4.13 0.00 2.27
971 990 0.107703 TTGCCCAACTAGCAGATCCG 60.108 55.000 0.00 0.00 42.17 4.18
989 1008 0.878523 CGCTCTCCGGTCAAAACACA 60.879 55.000 0.00 0.00 0.00 3.72
1094 1113 3.354948 CCTCCTTGGTGACATCATCAA 57.645 47.619 7.34 7.34 43.98 2.57
1107 1126 0.404040 TCATCAACCGCCTTCCCTTT 59.596 50.000 0.00 0.00 0.00 3.11
1265 1284 3.646715 CTCGGGGCCCTTCCACAA 61.647 66.667 24.38 0.00 38.54 3.33
1266 1285 2.938798 TCGGGGCCCTTCCACAAT 60.939 61.111 24.38 0.00 38.54 2.71
1286 1305 1.004080 TGAGCCTCTTCAGCTGCAC 60.004 57.895 9.47 0.00 41.75 4.57
1291 1310 3.602513 CTCTTCAGCTGCACGGCCT 62.603 63.158 9.47 0.00 0.00 5.19
1342 1836 3.706373 GCCTCCTCGCCACCAAGA 61.706 66.667 0.00 0.00 0.00 3.02
1453 1947 4.423209 AGTCCCTCTCCCTGGCCC 62.423 72.222 0.00 0.00 0.00 5.80
1470 1964 0.472734 CCCTCTGGAAGATCCCCGAT 60.473 60.000 0.00 0.00 45.62 4.18
1571 2065 2.747460 CCGCTTGCTTGCTGCCTA 60.747 61.111 0.00 0.00 42.00 3.93
1574 2068 1.676967 GCTTGCTTGCTGCCTACCT 60.677 57.895 0.00 0.00 42.00 3.08
1575 2069 1.246737 GCTTGCTTGCTGCCTACCTT 61.247 55.000 0.00 0.00 42.00 3.50
1577 2071 0.110295 TTGCTTGCTGCCTACCTTGA 59.890 50.000 0.00 0.00 42.00 3.02
1603 2097 3.001902 TACCTTGGGCTCGTGCTCG 62.002 63.158 9.61 0.81 44.15 5.03
1762 2256 0.034896 AACCGATTGCGTGAGGTTCT 59.965 50.000 1.35 0.00 42.74 3.01
1770 2264 1.648467 GCGTGAGGTTCTGGATTGCC 61.648 60.000 0.00 0.00 0.00 4.52
1806 2300 0.107165 GGGTCATTGGCTACCTGGAC 60.107 60.000 0.00 0.00 35.97 4.02
1827 2321 2.036217 CCCAAGAATTCACAAGCTGCAA 59.964 45.455 8.44 0.00 0.00 4.08
1854 2348 4.451096 GGTGACAACATCATCAAAGTACGT 59.549 41.667 0.00 0.00 40.28 3.57
1872 2366 2.104963 ACGTTTGCCTTTCCTTCTCTCT 59.895 45.455 0.00 0.00 0.00 3.10
1875 2369 3.692257 TTGCCTTTCCTTCTCTCTCTG 57.308 47.619 0.00 0.00 0.00 3.35
1960 2463 6.182507 AGAAACCATACAACTTGAGTACCA 57.817 37.500 0.00 0.00 0.00 3.25
2009 2512 1.222113 GGCCTAAGCACCTCACTCC 59.778 63.158 0.00 0.00 42.56 3.85
2031 2535 9.860898 ACTCCAAAAATATTGATAGACTTTTGC 57.139 29.630 0.00 0.00 34.15 3.68
2047 2551 1.706995 TTGCCTACCCCGTCAAACCA 61.707 55.000 0.00 0.00 0.00 3.67
2075 2580 4.612401 AGGGAAACTAGAACTAGGAGGAC 58.388 47.826 12.54 1.85 37.49 3.85
2076 2581 4.045590 AGGGAAACTAGAACTAGGAGGACA 59.954 45.833 12.54 0.00 37.49 4.02
2151 2656 8.822805 TCTACTTTCAAACTCTTACATGGGTAT 58.177 33.333 0.00 0.00 0.00 2.73
2173 2678 3.956377 CCTAGGTCAGGGACGCAT 58.044 61.111 0.00 0.00 41.26 4.73
2220 2725 3.368427 CGTGAGAACACCACATGGATAGT 60.368 47.826 4.53 0.00 43.34 2.12
2227 2794 3.269381 ACACCACATGGATAGTTTCCCAT 59.731 43.478 4.53 0.00 44.77 4.00
2232 2799 2.910688 TGGATAGTTTCCCATCGCTC 57.089 50.000 0.00 0.00 44.77 5.03
2348 5543 7.112779 TGGAAATCCATTAAGTCTCTTCCTTC 58.887 38.462 0.00 0.00 42.01 3.46
2356 5551 0.174617 GTCTCTTCCTTCCAGCTCCG 59.825 60.000 0.00 0.00 0.00 4.63
2418 5615 2.700897 GCCTAGCACCTATTTCAGAGGA 59.299 50.000 0.00 0.00 37.53 3.71
2431 5628 8.964772 CCTATTTCAGAGGAATCAATGAAACTT 58.035 33.333 8.29 0.00 42.56 2.66
2474 5672 2.899303 AAGTTCCACAACCCCCATAG 57.101 50.000 0.00 0.00 32.22 2.23
2475 5673 0.999712 AGTTCCACAACCCCCATAGG 59.000 55.000 0.00 0.00 32.22 2.57
2542 7161 9.252962 CCTTTAGATTCATATTGCCAAATCAAC 57.747 33.333 0.00 0.00 31.90 3.18
2616 7235 3.368248 ACCATTGCACCATTAGCTCATT 58.632 40.909 0.00 0.00 0.00 2.57
2628 7247 7.116805 CACCATTAGCTCATTTGAAAAAGTTCC 59.883 37.037 0.00 0.00 32.28 3.62
2633 7252 5.243954 AGCTCATTTGAAAAAGTTCCCCTAC 59.756 40.000 0.00 0.00 32.28 3.18
2664 7283 4.785914 TCTTAGATTACCACCATCCCACAA 59.214 41.667 0.00 0.00 0.00 3.33
2840 7463 5.335976 CCCACATAAAGCTTTTCCAGAACTC 60.336 44.000 18.47 0.00 0.00 3.01
2846 7469 4.429854 AGCTTTTCCAGAACTCAGAAGT 57.570 40.909 0.00 0.00 37.32 3.01
2872 7495 3.760693 TCCTGATAGCAAAGGACGC 57.239 52.632 0.00 0.00 37.68 5.19
2933 7558 2.576191 TCCATAAGGAACCTTCACCAGG 59.424 50.000 9.50 6.42 43.78 4.45
2950 7575 6.441222 TCACCAGGTATGTATCTCTTAACCT 58.559 40.000 0.00 0.00 0.00 3.50
3078 7705 3.055385 GCCCCTTCACTATCACTACACAA 60.055 47.826 0.00 0.00 0.00 3.33
3416 8086 6.305693 GCACTCTTATGCTAGTTAATTGGG 57.694 41.667 0.00 0.00 42.62 4.12
3470 8140 4.654915 TCCATTTCAGATTCAGAGCAACA 58.345 39.130 0.00 0.00 0.00 3.33
3471 8142 5.072055 TCCATTTCAGATTCAGAGCAACAA 58.928 37.500 0.00 0.00 0.00 2.83
3473 8144 5.805486 CCATTTCAGATTCAGAGCAACAATG 59.195 40.000 0.00 0.00 0.00 2.82
3557 8228 8.684386 TCTTTAAATGGAACTGTTATGTGACA 57.316 30.769 0.00 0.00 0.00 3.58
3596 8267 1.667236 TGTTCTTCTGGTGCACTGTG 58.333 50.000 17.98 2.76 0.00 3.66
3620 8291 2.854522 GCCTAACACAATGGCGAGT 58.145 52.632 0.00 0.00 37.11 4.18
3753 8424 1.893062 CTGCACATCGAGGTCCTCA 59.107 57.895 19.15 6.59 0.00 3.86
3760 8431 3.558829 CACATCGAGGTCCTCATGAATTG 59.441 47.826 25.66 15.81 0.00 2.32
3841 8512 4.587891 TGATGCACTCATTGGTATGAACA 58.412 39.130 0.00 0.00 40.17 3.18
3916 8587 4.232905 TGCTAGGTTCTGGCAGGT 57.767 55.556 15.73 0.00 42.73 4.00
3981 8652 4.898265 TGTTCATCCACAAATTTCAAGGGA 59.102 37.500 0.00 0.00 0.00 4.20
3997 8668 3.643159 AGGGAATCAAAACGAGTTTGC 57.357 42.857 1.65 0.00 45.38 3.68
4055 8726 0.950555 GAGCATTGCTGGTCGTGTCA 60.951 55.000 17.51 0.00 39.88 3.58
4088 8759 1.455402 TGCTTTGGCACTGGCAGAA 60.455 52.632 23.66 1.17 44.28 3.02
4109 8780 3.618351 AGAGGTGAATGAGATGGCAAAG 58.382 45.455 0.00 0.00 0.00 2.77
4119 8790 6.555463 ATGAGATGGCAAAGAAATTGGATT 57.445 33.333 0.00 0.00 39.54 3.01
4124 8795 3.253230 GGCAAAGAAATTGGATTGTCCG 58.747 45.455 0.00 0.00 40.17 4.79
4126 8797 3.253230 CAAAGAAATTGGATTGTCCGCC 58.747 45.455 0.00 0.00 40.17 6.13
4133 8804 1.916506 TGGATTGTCCGCCATTTCAA 58.083 45.000 0.00 0.00 40.17 2.69
4191 8862 5.180868 AGAGTGTGCAATGTTTTGATCTCTC 59.819 40.000 0.00 0.00 34.60 3.20
4308 8981 3.641436 TGACTGCTCTACTTCAAGGTCAA 59.359 43.478 0.00 0.00 31.00 3.18
4380 9054 9.378551 TCAACTTACCATGAGTATATTGTGAAC 57.621 33.333 0.00 0.00 32.12 3.18
4391 9065 4.806640 ATATTGTGAACAAAGCCTTGGG 57.193 40.909 0.00 0.00 39.55 4.12
4406 9080 7.881775 AAGCCTTGGGTTTATATGAGTAAAG 57.118 36.000 0.00 0.00 0.00 1.85
4476 9151 6.782000 ACTAGATACTCAGAGAGCCAAATGAT 59.218 38.462 3.79 0.00 32.04 2.45
4477 9152 7.947332 ACTAGATACTCAGAGAGCCAAATGATA 59.053 37.037 3.79 0.00 32.04 2.15
4536 9212 9.987272 CCTTGTGTAGATCATAAATCACATAGA 57.013 33.333 0.00 0.00 36.08 1.98
4580 9256 5.673514 ACTTTTGCCACAATGAAAGATTGT 58.326 33.333 0.00 0.00 42.38 2.71
4637 9325 1.207570 CTGCCAGAGAGCAATCTGTCT 59.792 52.381 14.81 0.00 44.35 3.41
4685 9373 1.843368 AAGAGGCCATGGTCATGTTG 58.157 50.000 20.74 0.00 37.11 3.33
4689 9377 1.153706 GCCATGGTCATGTTGCTGC 60.154 57.895 14.67 0.00 37.11 5.25
4690 9378 1.514087 CCATGGTCATGTTGCTGCC 59.486 57.895 2.57 0.00 37.11 4.85
4700 9388 1.035923 TGTTGCTGCCGGAAAAATGA 58.964 45.000 5.05 0.00 0.00 2.57
4703 9391 1.215382 GCTGCCGGAAAAATGACCC 59.785 57.895 5.05 0.00 0.00 4.46
4721 9409 3.486263 CGATGGTCGGCCTTCAAC 58.514 61.111 20.57 1.24 38.46 3.18
4723 9411 1.299976 GATGGTCGGCCTTCAACCT 59.700 57.895 16.52 0.00 38.43 3.50
4741 9429 1.276415 CTTTGGTTGGTTGCAACACG 58.724 50.000 29.55 3.30 36.83 4.49
4743 9431 0.888619 TTGGTTGGTTGCAACACGAA 59.111 45.000 29.55 19.79 36.83 3.85
4770 9459 8.398665 CACCGAAAAGGGAATAAATAAGAGAAG 58.601 37.037 0.00 0.00 46.96 2.85
4773 9462 8.624776 CGAAAAGGGAATAAATAAGAGAAGCAT 58.375 33.333 0.00 0.00 0.00 3.79
4778 9467 8.728098 AGGGAATAAATAAGAGAAGCATTACCT 58.272 33.333 0.00 0.00 31.67 3.08
4779 9468 9.355916 GGGAATAAATAAGAGAAGCATTACCTT 57.644 33.333 0.00 0.00 0.00 3.50
4801 9490 6.073276 CCTTGACAAATCAACACGAAGATACA 60.073 38.462 0.00 0.00 40.01 2.29
4806 9495 5.862924 AATCAACACGAAGATACACAAGG 57.137 39.130 0.00 0.00 0.00 3.61
4807 9496 3.064207 TCAACACGAAGATACACAAGGC 58.936 45.455 0.00 0.00 0.00 4.35
4808 9497 1.710013 ACACGAAGATACACAAGGCG 58.290 50.000 0.00 0.00 0.00 5.52
4821 9510 3.844562 AAGGCGCCCACCCCAAATT 62.845 57.895 26.15 4.00 0.00 1.82
4823 9512 2.423064 GGCGCCCACCCCAAATTAG 61.423 63.158 18.11 0.00 0.00 1.73
4840 9529 6.267014 CCAAATTAGAAGGACCCGAGATAGTA 59.733 42.308 0.00 0.00 0.00 1.82
4845 9534 3.157750 AGGACCCGAGATAGTATGGAC 57.842 52.381 0.00 0.00 0.00 4.02
4849 9538 1.540267 CCCGAGATAGTATGGACACCG 59.460 57.143 0.00 0.00 0.00 4.94
4860 9549 2.448582 GGACACCGCCCCCATATCA 61.449 63.158 0.00 0.00 0.00 2.15
4861 9550 1.761174 GACACCGCCCCCATATCAT 59.239 57.895 0.00 0.00 0.00 2.45
4866 9555 0.984230 CCGCCCCCATATCATACACT 59.016 55.000 0.00 0.00 0.00 3.55
4867 9556 2.184533 CCGCCCCCATATCATACACTA 58.815 52.381 0.00 0.00 0.00 2.74
4874 9563 6.683110 GCCCCCATATCATACACTAATAGTCG 60.683 46.154 0.00 0.00 0.00 4.18
4884 9573 5.821516 ACACTAATAGTCGAGAGAACCAG 57.178 43.478 0.00 0.00 45.01 4.00
4886 9575 4.096532 CACTAATAGTCGAGAGAACCAGCA 59.903 45.833 0.00 0.00 45.01 4.41
4887 9576 4.890581 ACTAATAGTCGAGAGAACCAGCAT 59.109 41.667 0.00 0.00 45.01 3.79
4907 9596 4.942483 GCATTTCTGATGGGAGATATGGAG 59.058 45.833 0.00 0.00 34.03 3.86
4914 9603 3.260269 TGGGAGATATGGAGGGTACTG 57.740 52.381 0.00 0.00 0.00 2.74
4919 9608 4.262079 GGAGATATGGAGGGTACTGTTTCG 60.262 50.000 0.00 0.00 0.00 3.46
4931 9620 2.244436 CTGTTTCGCTGCCACCATCG 62.244 60.000 0.00 0.00 32.23 3.84
4950 9639 0.930742 GCGAGAGTAGAATCCACGCG 60.931 60.000 3.53 3.53 36.41 6.01
4975 9664 3.581770 ACCAAAGACCTACCTAAGACACC 59.418 47.826 0.00 0.00 0.00 4.16
4984 9673 6.603224 ACCTACCTAAGACACCTAGATACTG 58.397 44.000 0.00 0.00 0.00 2.74
4985 9674 6.389278 ACCTACCTAAGACACCTAGATACTGA 59.611 42.308 0.00 0.00 0.00 3.41
4986 9675 7.073981 ACCTACCTAAGACACCTAGATACTGAT 59.926 40.741 0.00 0.00 0.00 2.90
4987 9676 8.604184 CCTACCTAAGACACCTAGATACTGATA 58.396 40.741 0.00 0.00 0.00 2.15
4989 9678 8.694581 ACCTAAGACACCTAGATACTGATAAC 57.305 38.462 0.00 0.00 0.00 1.89
4990 9679 7.724951 ACCTAAGACACCTAGATACTGATAACC 59.275 40.741 0.00 0.00 0.00 2.85
4991 9680 6.980416 AAGACACCTAGATACTGATAACCC 57.020 41.667 0.00 0.00 0.00 4.11
4992 9681 6.027025 AGACACCTAGATACTGATAACCCA 57.973 41.667 0.00 0.00 0.00 4.51
4993 9682 5.834204 AGACACCTAGATACTGATAACCCAC 59.166 44.000 0.00 0.00 0.00 4.61
4994 9683 5.525484 ACACCTAGATACTGATAACCCACA 58.475 41.667 0.00 0.00 0.00 4.17
4995 9684 5.962031 ACACCTAGATACTGATAACCCACAA 59.038 40.000 0.00 0.00 0.00 3.33
4996 9685 6.098409 ACACCTAGATACTGATAACCCACAAG 59.902 42.308 0.00 0.00 0.00 3.16
4997 9686 6.098409 CACCTAGATACTGATAACCCACAAGT 59.902 42.308 0.00 0.00 0.00 3.16
4998 9687 7.287005 CACCTAGATACTGATAACCCACAAGTA 59.713 40.741 0.00 0.00 0.00 2.24
4999 9688 7.287235 ACCTAGATACTGATAACCCACAAGTAC 59.713 40.741 0.00 0.00 0.00 2.73
5000 9689 7.287005 CCTAGATACTGATAACCCACAAGTACA 59.713 40.741 0.00 0.00 0.00 2.90
5001 9690 7.113658 AGATACTGATAACCCACAAGTACAG 57.886 40.000 0.00 0.00 0.00 2.74
5002 9691 4.553330 ACTGATAACCCACAAGTACAGG 57.447 45.455 0.00 0.00 0.00 4.00
5008 9697 1.285280 CCCACAAGTACAGGGGATCA 58.715 55.000 8.10 0.00 43.57 2.92
5009 9698 1.633432 CCCACAAGTACAGGGGATCAA 59.367 52.381 8.10 0.00 43.57 2.57
5010 9699 2.242196 CCCACAAGTACAGGGGATCAAT 59.758 50.000 8.10 0.00 43.57 2.57
5011 9700 3.309121 CCCACAAGTACAGGGGATCAATT 60.309 47.826 8.10 0.00 43.57 2.32
5012 9701 3.696051 CCACAAGTACAGGGGATCAATTG 59.304 47.826 0.00 0.00 0.00 2.32
5013 9702 4.335416 CACAAGTACAGGGGATCAATTGT 58.665 43.478 5.13 0.00 0.00 2.71
5014 9703 5.496556 CACAAGTACAGGGGATCAATTGTA 58.503 41.667 5.13 0.00 0.00 2.41
5015 9704 5.586243 CACAAGTACAGGGGATCAATTGTAG 59.414 44.000 5.13 0.00 0.00 2.74
5016 9705 4.423625 AGTACAGGGGATCAATTGTAGC 57.576 45.455 5.13 0.00 0.00 3.58
5017 9706 2.736670 ACAGGGGATCAATTGTAGCC 57.263 50.000 5.13 4.61 0.00 3.93
5018 9707 2.208872 ACAGGGGATCAATTGTAGCCT 58.791 47.619 5.13 0.00 0.00 4.58
5019 9708 2.173569 ACAGGGGATCAATTGTAGCCTC 59.826 50.000 5.13 4.74 0.00 4.70
5020 9709 2.441001 CAGGGGATCAATTGTAGCCTCT 59.559 50.000 5.13 7.01 0.00 3.69
5021 9710 3.117738 CAGGGGATCAATTGTAGCCTCTT 60.118 47.826 10.66 0.00 0.00 2.85
5022 9711 3.529319 AGGGGATCAATTGTAGCCTCTTT 59.471 43.478 5.13 0.00 0.00 2.52
5023 9712 3.885901 GGGGATCAATTGTAGCCTCTTTC 59.114 47.826 5.13 0.00 0.00 2.62
5024 9713 3.561725 GGGATCAATTGTAGCCTCTTTCG 59.438 47.826 5.13 0.00 0.00 3.46
5025 9714 4.442706 GGATCAATTGTAGCCTCTTTCGA 58.557 43.478 5.13 0.00 0.00 3.71
5026 9715 5.059833 GGATCAATTGTAGCCTCTTTCGAT 58.940 41.667 5.13 0.00 0.00 3.59
5027 9716 6.223852 GGATCAATTGTAGCCTCTTTCGATA 58.776 40.000 5.13 0.00 0.00 2.92
5028 9717 6.706270 GGATCAATTGTAGCCTCTTTCGATAA 59.294 38.462 5.13 0.00 0.00 1.75
5029 9718 7.095439 GGATCAATTGTAGCCTCTTTCGATAAG 60.095 40.741 5.13 0.00 0.00 1.73
5030 9719 6.640518 TCAATTGTAGCCTCTTTCGATAAGT 58.359 36.000 5.13 0.00 0.00 2.24
5031 9720 7.778083 TCAATTGTAGCCTCTTTCGATAAGTA 58.222 34.615 5.13 0.00 0.00 2.24
5032 9721 8.255206 TCAATTGTAGCCTCTTTCGATAAGTAA 58.745 33.333 5.13 0.00 0.00 2.24
5033 9722 8.543774 CAATTGTAGCCTCTTTCGATAAGTAAG 58.456 37.037 0.00 0.00 0.00 2.34
5034 9723 7.400599 TTGTAGCCTCTTTCGATAAGTAAGA 57.599 36.000 0.00 0.00 35.42 2.10
5036 9725 6.602406 TGTAGCCTCTTTCGATAAGTAAGAGT 59.398 38.462 18.03 7.32 46.54 3.24
5037 9726 5.897050 AGCCTCTTTCGATAAGTAAGAGTG 58.103 41.667 18.03 12.41 46.54 3.51
5038 9727 5.419471 AGCCTCTTTCGATAAGTAAGAGTGT 59.581 40.000 18.03 6.31 46.54 3.55
5039 9728 5.744819 GCCTCTTTCGATAAGTAAGAGTGTC 59.255 44.000 18.03 7.30 46.54 3.67
5040 9729 6.625300 GCCTCTTTCGATAAGTAAGAGTGTCA 60.625 42.308 18.03 0.00 46.54 3.58
5041 9730 7.313646 CCTCTTTCGATAAGTAAGAGTGTCAA 58.686 38.462 18.03 0.00 46.54 3.18
5042 9731 7.813148 CCTCTTTCGATAAGTAAGAGTGTCAAA 59.187 37.037 18.03 0.00 46.54 2.69
5043 9732 8.516811 TCTTTCGATAAGTAAGAGTGTCAAAC 57.483 34.615 0.00 0.00 32.40 2.93
5044 9733 7.597743 TCTTTCGATAAGTAAGAGTGTCAAACC 59.402 37.037 0.00 0.00 32.40 3.27
5045 9734 5.717119 TCGATAAGTAAGAGTGTCAAACCC 58.283 41.667 0.00 0.00 0.00 4.11
5046 9735 5.244402 TCGATAAGTAAGAGTGTCAAACCCA 59.756 40.000 0.00 0.00 0.00 4.51
5047 9736 5.929992 CGATAAGTAAGAGTGTCAAACCCAA 59.070 40.000 0.00 0.00 0.00 4.12
5048 9737 6.128634 CGATAAGTAAGAGTGTCAAACCCAAC 60.129 42.308 0.00 0.00 0.00 3.77
5049 9738 3.463944 AGTAAGAGTGTCAAACCCAACG 58.536 45.455 0.00 0.00 0.00 4.10
5050 9739 2.702592 AAGAGTGTCAAACCCAACGA 57.297 45.000 0.00 0.00 0.00 3.85
5051 9740 2.240493 AGAGTGTCAAACCCAACGAG 57.760 50.000 0.00 0.00 0.00 4.18
5052 9741 1.202651 AGAGTGTCAAACCCAACGAGG 60.203 52.381 0.00 0.00 37.03 4.63
5053 9742 0.834612 AGTGTCAAACCCAACGAGGA 59.165 50.000 0.00 0.00 41.22 3.71
5054 9743 1.202651 AGTGTCAAACCCAACGAGGAG 60.203 52.381 0.00 0.00 41.22 3.69
5055 9744 0.534203 TGTCAAACCCAACGAGGAGC 60.534 55.000 0.00 0.00 41.22 4.70
5056 9745 0.250338 GTCAAACCCAACGAGGAGCT 60.250 55.000 0.00 0.00 41.22 4.09
5057 9746 1.001633 GTCAAACCCAACGAGGAGCTA 59.998 52.381 0.00 0.00 41.22 3.32
5058 9747 1.695242 TCAAACCCAACGAGGAGCTAA 59.305 47.619 0.00 0.00 41.22 3.09
5059 9748 2.105134 TCAAACCCAACGAGGAGCTAAA 59.895 45.455 0.00 0.00 41.22 1.85
5060 9749 2.474410 AACCCAACGAGGAGCTAAAG 57.526 50.000 0.00 0.00 41.22 1.85
5061 9750 0.613777 ACCCAACGAGGAGCTAAAGG 59.386 55.000 0.00 0.00 41.22 3.11
5062 9751 0.613777 CCCAACGAGGAGCTAAAGGT 59.386 55.000 0.00 0.00 41.22 3.50
5063 9752 1.829222 CCCAACGAGGAGCTAAAGGTA 59.171 52.381 0.00 0.00 41.22 3.08
5064 9753 2.159085 CCCAACGAGGAGCTAAAGGTAG 60.159 54.545 0.00 0.00 41.22 3.18
5065 9754 2.758979 CCAACGAGGAGCTAAAGGTAGA 59.241 50.000 0.00 0.00 41.22 2.59
5066 9755 3.194968 CCAACGAGGAGCTAAAGGTAGAA 59.805 47.826 0.00 0.00 41.22 2.10
5067 9756 4.174762 CAACGAGGAGCTAAAGGTAGAAC 58.825 47.826 0.00 0.00 0.00 3.01
5068 9757 3.428532 ACGAGGAGCTAAAGGTAGAACA 58.571 45.455 0.00 0.00 0.00 3.18
5069 9758 3.830755 ACGAGGAGCTAAAGGTAGAACAA 59.169 43.478 0.00 0.00 0.00 2.83
5070 9759 4.282703 ACGAGGAGCTAAAGGTAGAACAAA 59.717 41.667 0.00 0.00 0.00 2.83
5071 9760 5.046520 ACGAGGAGCTAAAGGTAGAACAAAT 60.047 40.000 0.00 0.00 0.00 2.32
5072 9761 6.154021 ACGAGGAGCTAAAGGTAGAACAAATA 59.846 38.462 0.00 0.00 0.00 1.40
5073 9762 7.147707 ACGAGGAGCTAAAGGTAGAACAAATAT 60.148 37.037 0.00 0.00 0.00 1.28
5074 9763 7.711339 CGAGGAGCTAAAGGTAGAACAAATATT 59.289 37.037 0.00 0.00 0.00 1.28
5075 9764 8.966069 AGGAGCTAAAGGTAGAACAAATATTC 57.034 34.615 0.00 0.00 0.00 1.75
5076 9765 7.993758 AGGAGCTAAAGGTAGAACAAATATTCC 59.006 37.037 0.00 0.00 0.00 3.01
5077 9766 7.228906 GGAGCTAAAGGTAGAACAAATATTCCC 59.771 40.741 0.00 0.00 0.00 3.97
5078 9767 7.873195 AGCTAAAGGTAGAACAAATATTCCCT 58.127 34.615 0.00 0.00 0.00 4.20
5079 9768 7.993758 AGCTAAAGGTAGAACAAATATTCCCTC 59.006 37.037 0.00 0.00 0.00 4.30
5080 9769 7.773690 GCTAAAGGTAGAACAAATATTCCCTCA 59.226 37.037 0.00 0.00 0.00 3.86
5081 9770 9.681062 CTAAAGGTAGAACAAATATTCCCTCAA 57.319 33.333 0.00 0.00 0.00 3.02
5082 9771 8.581253 AAAGGTAGAACAAATATTCCCTCAAG 57.419 34.615 0.00 0.00 0.00 3.02
5083 9772 7.272144 AGGTAGAACAAATATTCCCTCAAGT 57.728 36.000 0.00 0.00 0.00 3.16
5084 9773 7.699878 AGGTAGAACAAATATTCCCTCAAGTT 58.300 34.615 0.00 0.00 0.00 2.66
5085 9774 8.170730 AGGTAGAACAAATATTCCCTCAAGTTT 58.829 33.333 0.00 0.00 0.00 2.66
5086 9775 8.803235 GGTAGAACAAATATTCCCTCAAGTTTT 58.197 33.333 0.00 0.00 0.00 2.43
5090 9779 9.503427 GAACAAATATTCCCTCAAGTTTTATCG 57.497 33.333 0.00 0.00 0.00 2.92
5091 9780 8.801882 ACAAATATTCCCTCAAGTTTTATCGA 57.198 30.769 0.00 0.00 0.00 3.59
5092 9781 8.674607 ACAAATATTCCCTCAAGTTTTATCGAC 58.325 33.333 0.00 0.00 0.00 4.20
5093 9782 7.803279 AATATTCCCTCAAGTTTTATCGACC 57.197 36.000 0.00 0.00 0.00 4.79
5094 9783 4.627284 TTCCCTCAAGTTTTATCGACCA 57.373 40.909 0.00 0.00 0.00 4.02
5095 9784 3.934068 TCCCTCAAGTTTTATCGACCAC 58.066 45.455 0.00 0.00 0.00 4.16
5096 9785 3.007635 CCCTCAAGTTTTATCGACCACC 58.992 50.000 0.00 0.00 0.00 4.61
5097 9786 2.671396 CCTCAAGTTTTATCGACCACCG 59.329 50.000 0.00 0.00 40.25 4.94
5107 9796 1.830279 TCGACCACCGATACAACTCT 58.170 50.000 0.00 0.00 43.23 3.24
5108 9797 2.989909 TCGACCACCGATACAACTCTA 58.010 47.619 0.00 0.00 43.23 2.43
5109 9798 2.679837 TCGACCACCGATACAACTCTAC 59.320 50.000 0.00 0.00 43.23 2.59
5110 9799 2.538333 CGACCACCGATACAACTCTACG 60.538 54.545 0.00 0.00 41.76 3.51
5111 9800 1.133790 ACCACCGATACAACTCTACGC 59.866 52.381 0.00 0.00 0.00 4.42
5112 9801 1.133598 CCACCGATACAACTCTACGCA 59.866 52.381 0.00 0.00 0.00 5.24
5113 9802 2.182825 CACCGATACAACTCTACGCAC 58.817 52.381 0.00 0.00 0.00 5.34
5114 9803 1.202110 ACCGATACAACTCTACGCACG 60.202 52.381 0.00 0.00 0.00 5.34
5115 9804 0.838229 CGATACAACTCTACGCACGC 59.162 55.000 0.00 0.00 0.00 5.34
5116 9805 1.531264 CGATACAACTCTACGCACGCT 60.531 52.381 0.00 0.00 0.00 5.07
5117 9806 2.527100 GATACAACTCTACGCACGCTT 58.473 47.619 0.00 0.00 0.00 4.68
5118 9807 3.688272 GATACAACTCTACGCACGCTTA 58.312 45.455 0.00 0.00 0.00 3.09
5119 9808 2.427232 ACAACTCTACGCACGCTTAA 57.573 45.000 0.00 0.00 0.00 1.85
5120 9809 2.056577 ACAACTCTACGCACGCTTAAC 58.943 47.619 0.00 0.00 0.00 2.01
5135 9824 5.431650 CGCTTAACGTTCACTTTACCTAG 57.568 43.478 2.82 0.00 36.87 3.02
5136 9825 5.156355 CGCTTAACGTTCACTTTACCTAGA 58.844 41.667 2.82 0.00 36.87 2.43
5137 9826 5.630680 CGCTTAACGTTCACTTTACCTAGAA 59.369 40.000 2.82 0.00 36.87 2.10
5138 9827 6.399354 CGCTTAACGTTCACTTTACCTAGAAC 60.399 42.308 2.82 0.00 37.57 3.01
5139 9828 6.421801 GCTTAACGTTCACTTTACCTAGAACA 59.578 38.462 2.82 0.00 40.14 3.18
5140 9829 7.042523 GCTTAACGTTCACTTTACCTAGAACAA 60.043 37.037 2.82 0.00 40.14 2.83
5141 9830 6.839820 AACGTTCACTTTACCTAGAACAAG 57.160 37.500 0.00 0.00 40.14 3.16
5142 9831 5.910614 ACGTTCACTTTACCTAGAACAAGT 58.089 37.500 0.00 0.00 40.14 3.16
5143 9832 7.042797 ACGTTCACTTTACCTAGAACAAGTA 57.957 36.000 0.00 0.00 40.14 2.24
5144 9833 7.664758 ACGTTCACTTTACCTAGAACAAGTAT 58.335 34.615 0.00 0.00 40.14 2.12
5145 9834 7.597743 ACGTTCACTTTACCTAGAACAAGTATG 59.402 37.037 0.00 0.00 40.14 2.39
5146 9835 7.811236 CGTTCACTTTACCTAGAACAAGTATGA 59.189 37.037 0.00 0.00 40.14 2.15
5147 9836 9.485206 GTTCACTTTACCTAGAACAAGTATGAA 57.515 33.333 0.00 0.00 39.95 2.57
5149 9838 9.485206 TCACTTTACCTAGAACAAGTATGAAAC 57.515 33.333 0.00 0.00 0.00 2.78
5150 9839 9.490379 CACTTTACCTAGAACAAGTATGAAACT 57.510 33.333 0.00 0.00 41.49 2.66
5156 9845 9.091220 ACCTAGAACAAGTATGAAACTAGAAGT 57.909 33.333 0.00 0.00 37.50 3.01
5169 9858 8.015185 TGAAACTAGAAGTACTTTGTAGGTGT 57.985 34.615 21.29 11.44 37.05 4.16
5170 9859 8.480501 TGAAACTAGAAGTACTTTGTAGGTGTT 58.519 33.333 21.29 15.01 37.05 3.32
5171 9860 9.322773 GAAACTAGAAGTACTTTGTAGGTGTTT 57.677 33.333 21.29 17.73 37.05 2.83
5172 9861 9.676861 AAACTAGAAGTACTTTGTAGGTGTTTT 57.323 29.630 21.29 13.64 37.05 2.43
5173 9862 9.676861 AACTAGAAGTACTTTGTAGGTGTTTTT 57.323 29.630 21.29 9.41 37.05 1.94
5174 9863 9.106070 ACTAGAAGTACTTTGTAGGTGTTTTTG 57.894 33.333 21.29 4.08 37.05 2.44
5175 9864 7.329588 AGAAGTACTTTGTAGGTGTTTTTGG 57.670 36.000 10.02 0.00 0.00 3.28
5176 9865 7.114095 AGAAGTACTTTGTAGGTGTTTTTGGA 58.886 34.615 10.02 0.00 0.00 3.53
5177 9866 6.688637 AGTACTTTGTAGGTGTTTTTGGAC 57.311 37.500 0.00 0.00 0.00 4.02
5178 9867 6.181908 AGTACTTTGTAGGTGTTTTTGGACA 58.818 36.000 0.00 0.00 0.00 4.02
5179 9868 5.576447 ACTTTGTAGGTGTTTTTGGACAG 57.424 39.130 0.00 0.00 0.00 3.51
5180 9869 4.401202 ACTTTGTAGGTGTTTTTGGACAGG 59.599 41.667 0.00 0.00 0.00 4.00
5181 9870 3.655615 TGTAGGTGTTTTTGGACAGGT 57.344 42.857 0.00 0.00 0.00 4.00
5182 9871 3.970842 TGTAGGTGTTTTTGGACAGGTT 58.029 40.909 0.00 0.00 0.00 3.50
5183 9872 4.345854 TGTAGGTGTTTTTGGACAGGTTT 58.654 39.130 0.00 0.00 0.00 3.27
5184 9873 3.885724 AGGTGTTTTTGGACAGGTTTG 57.114 42.857 0.00 0.00 0.00 2.93
5185 9874 2.093711 AGGTGTTTTTGGACAGGTTTGC 60.094 45.455 0.00 0.00 0.00 3.68
5186 9875 2.354203 GGTGTTTTTGGACAGGTTTGCA 60.354 45.455 0.00 0.00 0.00 4.08
5187 9876 3.330267 GTGTTTTTGGACAGGTTTGCAA 58.670 40.909 0.00 0.00 0.00 4.08
5188 9877 3.370672 GTGTTTTTGGACAGGTTTGCAAG 59.629 43.478 0.00 0.00 0.00 4.01
5189 9878 3.259374 TGTTTTTGGACAGGTTTGCAAGA 59.741 39.130 0.00 0.00 0.00 3.02
5190 9879 4.081198 TGTTTTTGGACAGGTTTGCAAGAT 60.081 37.500 0.00 0.00 0.00 2.40
5191 9880 5.127845 TGTTTTTGGACAGGTTTGCAAGATA 59.872 36.000 0.00 0.00 0.00 1.98
5192 9881 5.860941 TTTTGGACAGGTTTGCAAGATAA 57.139 34.783 0.00 0.00 0.00 1.75
5193 9882 6.418057 TTTTGGACAGGTTTGCAAGATAAT 57.582 33.333 0.00 0.00 0.00 1.28
5194 9883 7.531857 TTTTGGACAGGTTTGCAAGATAATA 57.468 32.000 0.00 0.00 0.00 0.98
5195 9884 7.531857 TTTGGACAGGTTTGCAAGATAATAA 57.468 32.000 0.00 0.00 0.00 1.40
5196 9885 7.531857 TTGGACAGGTTTGCAAGATAATAAA 57.468 32.000 0.00 0.00 0.00 1.40
5197 9886 7.156876 TGGACAGGTTTGCAAGATAATAAAG 57.843 36.000 0.00 0.00 0.00 1.85
5198 9887 6.945435 TGGACAGGTTTGCAAGATAATAAAGA 59.055 34.615 0.00 0.00 0.00 2.52
5199 9888 7.121168 TGGACAGGTTTGCAAGATAATAAAGAG 59.879 37.037 0.00 0.00 0.00 2.85
5200 9889 6.856895 ACAGGTTTGCAAGATAATAAAGAGC 58.143 36.000 0.00 0.00 0.00 4.09
5201 9890 6.434028 ACAGGTTTGCAAGATAATAAAGAGCA 59.566 34.615 0.00 0.00 0.00 4.26
5202 9891 6.749118 CAGGTTTGCAAGATAATAAAGAGCAC 59.251 38.462 0.00 0.00 0.00 4.40
5203 9892 6.434028 AGGTTTGCAAGATAATAAAGAGCACA 59.566 34.615 0.00 0.00 0.00 4.57
5204 9893 7.123247 AGGTTTGCAAGATAATAAAGAGCACAT 59.877 33.333 0.00 0.00 0.00 3.21
5205 9894 8.405531 GGTTTGCAAGATAATAAAGAGCACATA 58.594 33.333 0.00 0.00 0.00 2.29
5206 9895 9.787532 GTTTGCAAGATAATAAAGAGCACATAA 57.212 29.630 0.00 0.00 0.00 1.90
5218 9907 9.807649 ATAAAGAGCACATAAATAAAAAGCAGG 57.192 29.630 0.00 0.00 0.00 4.85
5219 9908 6.212888 AGAGCACATAAATAAAAAGCAGGG 57.787 37.500 0.00 0.00 0.00 4.45
5220 9909 5.127682 AGAGCACATAAATAAAAAGCAGGGG 59.872 40.000 0.00 0.00 0.00 4.79
5221 9910 4.162131 AGCACATAAATAAAAAGCAGGGGG 59.838 41.667 0.00 0.00 0.00 5.40
5222 9911 4.081142 GCACATAAATAAAAAGCAGGGGGT 60.081 41.667 0.00 0.00 0.00 4.95
5223 9912 5.570641 GCACATAAATAAAAAGCAGGGGGTT 60.571 40.000 0.00 0.00 35.98 4.11
5224 9913 5.874261 CACATAAATAAAAAGCAGGGGGTTG 59.126 40.000 0.00 0.00 34.38 3.77
5225 9914 5.546110 ACATAAATAAAAAGCAGGGGGTTGT 59.454 36.000 0.00 0.00 34.38 3.32
5226 9915 6.043822 ACATAAATAAAAAGCAGGGGGTTGTT 59.956 34.615 0.00 0.00 36.07 2.83
5227 9916 5.381184 AAATAAAAAGCAGGGGGTTGTTT 57.619 34.783 0.00 0.00 34.03 2.83
5228 9917 6.502074 AAATAAAAAGCAGGGGGTTGTTTA 57.498 33.333 0.00 0.00 34.03 2.01
5229 9918 5.738619 ATAAAAAGCAGGGGGTTGTTTAG 57.261 39.130 0.00 0.00 34.03 1.85
5230 9919 3.322191 AAAAGCAGGGGGTTGTTTAGA 57.678 42.857 0.00 0.00 34.38 2.10
5231 9920 3.542969 AAAGCAGGGGGTTGTTTAGAT 57.457 42.857 0.00 0.00 34.38 1.98
5232 9921 4.668138 AAAGCAGGGGGTTGTTTAGATA 57.332 40.909 0.00 0.00 34.38 1.98
5233 9922 4.668138 AAGCAGGGGGTTGTTTAGATAA 57.332 40.909 0.00 0.00 32.52 1.75
5234 9923 4.668138 AGCAGGGGGTTGTTTAGATAAA 57.332 40.909 0.00 0.00 0.00 1.40
5235 9924 4.600062 AGCAGGGGGTTGTTTAGATAAAG 58.400 43.478 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.020720 TGCACCAACAGAAACGAACAT 58.979 42.857 0.00 0.00 0.00 2.71
18 19 3.443037 CATTTGCACCAACAGAAACGAA 58.557 40.909 0.00 0.00 0.00 3.85
27 28 1.229975 GGCCAAGCATTTGCACCAAC 61.230 55.000 0.00 0.00 45.16 3.77
32 33 3.699411 AAAATAGGCCAAGCATTTGCA 57.301 38.095 5.01 0.00 45.16 4.08
189 191 3.810941 GGTACATCAAAGACAAACACCGA 59.189 43.478 0.00 0.00 0.00 4.69
191 193 4.142038 AGGGTACATCAAAGACAAACACC 58.858 43.478 0.00 0.00 0.00 4.16
252 258 0.760567 ATGCCATGCTACCCTCTCGA 60.761 55.000 0.00 0.00 0.00 4.04
282 288 2.279851 TGGCACGTGGTGAACTCG 60.280 61.111 18.88 0.00 41.52 4.18
393 400 3.372206 CACGTGATGAACTGATTTCCCTC 59.628 47.826 10.90 0.00 32.58 4.30
749 765 8.739972 GTCATTGAGAAAACCCTAACATAATGT 58.260 33.333 0.00 0.00 0.00 2.71
780 796 9.422681 TCTAGATTAGTTGTTGGCTAGTAATCT 57.577 33.333 16.78 16.78 45.68 2.40
835 851 7.069578 TCTCTGGAGTTGACTAACTAACAAAGT 59.930 37.037 0.00 0.00 46.79 2.66
836 852 7.382759 GTCTCTGGAGTTGACTAACTAACAAAG 59.617 40.741 0.00 0.00 46.79 2.77
839 858 5.831525 TGTCTCTGGAGTTGACTAACTAACA 59.168 40.000 0.00 0.00 46.79 2.41
862 881 2.967599 TAGCACACTGGCACTATCTG 57.032 50.000 0.00 0.00 35.83 2.90
926 945 1.908299 TGAGAAGCGAGTGCCCTCA 60.908 57.895 0.00 6.05 44.13 3.86
971 990 0.586802 GTGTGTTTTGACCGGAGAGC 59.413 55.000 9.46 0.00 0.00 4.09
989 1008 3.402681 CGCCCATGGTGGAGAGGT 61.403 66.667 11.73 0.00 40.96 3.85
1054 1073 4.344865 GTTGGGGAGGGCGCTGAA 62.345 66.667 8.56 0.00 0.00 3.02
1083 1102 1.678728 GGAAGGCGGTTGATGATGTCA 60.679 52.381 0.00 0.00 34.25 3.58
1094 1113 1.269703 ATCCGTAAAGGGAAGGCGGT 61.270 55.000 0.00 0.00 42.62 5.68
1249 1268 2.938798 ATTGTGGAAGGGCCCCGA 60.939 61.111 21.43 1.99 34.97 5.14
1265 1284 0.392729 GCAGCTGAAGAGGCTCACAT 60.393 55.000 20.43 1.85 38.03 3.21
1266 1285 1.004080 GCAGCTGAAGAGGCTCACA 60.004 57.895 20.43 14.78 38.03 3.58
1342 1836 1.754226 GAAGGAGAGGTTCTCGATGCT 59.246 52.381 0.41 0.00 44.28 3.79
1453 1947 1.342819 GTCATCGGGGATCTTCCAGAG 59.657 57.143 0.00 0.00 38.64 3.35
1535 2029 1.812571 GGTGGATGTACTGGTTGCTTG 59.187 52.381 0.00 0.00 0.00 4.01
1536 2030 1.610624 CGGTGGATGTACTGGTTGCTT 60.611 52.381 0.00 0.00 0.00 3.91
1540 2034 0.690762 AAGCGGTGGATGTACTGGTT 59.309 50.000 0.00 0.00 41.41 3.67
1571 2065 2.840651 CCAAGGTACTCCAGATCAAGGT 59.159 50.000 0.00 0.00 38.49 3.50
1574 2068 1.559682 GCCCAAGGTACTCCAGATCAA 59.440 52.381 0.00 0.00 38.49 2.57
1575 2069 1.204146 GCCCAAGGTACTCCAGATCA 58.796 55.000 0.00 0.00 38.49 2.92
1577 2071 1.501582 GAGCCCAAGGTACTCCAGAT 58.498 55.000 0.00 0.00 38.49 2.90
1603 2097 1.883084 CACGCTCGGGCTTACCATC 60.883 63.158 5.36 0.00 40.22 3.51
1791 2285 1.998530 TGGGTCCAGGTAGCCAATG 59.001 57.895 7.21 0.00 43.83 2.82
1806 2300 1.614903 TGCAGCTTGTGAATTCTTGGG 59.385 47.619 7.05 0.00 0.00 4.12
1827 2321 4.761739 ACTTTGATGATGTTGTCACCGATT 59.238 37.500 0.00 0.00 40.28 3.34
1854 2348 3.244700 CCAGAGAGAGAAGGAAAGGCAAA 60.245 47.826 0.00 0.00 0.00 3.68
1920 2419 5.123820 TGGTTTCTTTCTTATGAATGGAGCG 59.876 40.000 4.92 0.00 31.56 5.03
2031 2535 0.952010 CGTTGGTTTGACGGGGTAGG 60.952 60.000 0.00 0.00 36.90 3.18
2047 2551 2.617658 AGTTCTAGTTTCCCTCCCGTT 58.382 47.619 0.00 0.00 0.00 4.44
2075 2580 8.786826 TCCTTTACCAAGATTACTACAATGTG 57.213 34.615 0.00 0.00 30.57 3.21
2076 2581 9.802039 TTTCCTTTACCAAGATTACTACAATGT 57.198 29.630 0.00 0.00 30.57 2.71
2151 2656 1.551883 GCGTCCCTGACCTAGGTTTTA 59.448 52.381 17.53 5.09 45.80 1.52
2152 2657 0.323957 GCGTCCCTGACCTAGGTTTT 59.676 55.000 17.53 0.00 45.80 2.43
2167 2672 0.445436 CTTCTTCACTGGCATGCGTC 59.555 55.000 12.44 0.00 0.00 5.19
2173 2678 0.604780 GCTGAGCTTCTTCACTGGCA 60.605 55.000 0.00 0.00 0.00 4.92
2199 2704 4.207891 ACTATCCATGTGGTGTTCTCAC 57.792 45.455 0.00 0.00 43.19 3.51
2220 2725 1.204786 TGGAAGGGAGCGATGGGAAA 61.205 55.000 0.00 0.00 0.00 3.13
2227 2794 0.911769 AATGTCATGGAAGGGAGCGA 59.088 50.000 0.00 0.00 0.00 4.93
2232 2799 3.012518 GTGAGACAATGTCATGGAAGGG 58.987 50.000 16.38 0.00 34.60 3.95
2342 5537 4.225860 TTCCGGAGCTGGAAGGAA 57.774 55.556 3.34 3.47 43.01 3.36
2356 5551 4.629092 AGAGACTAGACAAAACCGTTTCC 58.371 43.478 0.00 0.00 0.00 3.13
2396 5593 2.435805 CCTCTGAAATAGGTGCTAGGCA 59.564 50.000 0.00 0.00 35.60 4.75
2474 5672 7.039363 ACCTCTATAGTTACATCTGCAATCTCC 60.039 40.741 0.00 0.00 0.00 3.71
2475 5673 7.891561 ACCTCTATAGTTACATCTGCAATCTC 58.108 38.462 0.00 0.00 0.00 2.75
2512 7131 7.528996 TTGGCAATATGAATCTAAAGGGATG 57.471 36.000 0.00 0.00 0.00 3.51
2542 7161 6.478344 CACCTTTTAGAGATGAGGAAGATTCG 59.522 42.308 0.00 0.00 33.47 3.34
2592 7211 2.754552 GAGCTAATGGTGCAATGGTTCA 59.245 45.455 0.00 0.00 0.00 3.18
2616 7235 4.529716 ACCTGTAGGGGAACTTTTTCAA 57.470 40.909 2.53 0.00 40.27 2.69
2628 7247 6.781014 TGGTAATCTAAGATGTACCTGTAGGG 59.219 42.308 2.53 0.00 40.27 3.53
2633 7252 6.479972 TGGTGGTAATCTAAGATGTACCTG 57.520 41.667 11.65 0.00 37.49 4.00
2771 7392 2.143876 AATGGTATGTTGGGAGTGGC 57.856 50.000 0.00 0.00 0.00 5.01
2840 7463 0.394192 TCAGGACAGCCACACTTCTG 59.606 55.000 0.00 0.00 36.29 3.02
2846 7469 0.983467 TTGCTATCAGGACAGCCACA 59.017 50.000 0.00 0.00 36.95 4.17
2872 7495 9.672673 CAATAAGTATAATACCAGGAATCCCAG 57.327 37.037 0.00 0.00 33.88 4.45
2928 7553 7.011382 CCTAGGTTAAGAGATACATACCTGGT 58.989 42.308 4.05 4.05 0.00 4.00
2991 7616 0.122435 GGGATATGGGGGATGGGGTA 59.878 60.000 0.00 0.00 0.00 3.69
3078 7705 5.366460 TCAATTCACACATGGCAAATTGTT 58.634 33.333 15.73 0.00 38.10 2.83
3191 7819 7.926555 AGAGTCAAACGTCTTTCTTATTTGAGA 59.073 33.333 0.00 0.00 39.31 3.27
3192 7820 8.077836 AGAGTCAAACGTCTTTCTTATTTGAG 57.922 34.615 0.00 0.00 39.31 3.02
3193 7821 7.170998 GGAGAGTCAAACGTCTTTCTTATTTGA 59.829 37.037 0.00 0.00 37.03 2.69
3207 7835 0.868406 GCTGGTTGGAGAGTCAAACG 59.132 55.000 0.00 0.00 37.16 3.60
3213 7841 3.690460 CCAAAATAGCTGGTTGGAGAGT 58.310 45.455 16.06 0.00 43.82 3.24
3404 8074 4.699925 TTCGGGGATCCCAATTAACTAG 57.300 45.455 32.07 10.86 45.83 2.57
3416 8086 5.293560 TGTTTTGAACAAATTTCGGGGATC 58.706 37.500 0.82 0.00 38.72 3.36
3471 8142 9.603921 CCTTTTGTTCTTATAAAATGATGCCAT 57.396 29.630 0.00 0.00 33.66 4.40
3473 8144 8.040727 ACCCTTTTGTTCTTATAAAATGATGCC 58.959 33.333 0.00 0.00 0.00 4.40
3528 8199 8.567948 CACATAACAGTTCCATTTAAAGAGTGT 58.432 33.333 0.00 0.00 0.00 3.55
3536 8207 8.458573 AACTTGTCACATAACAGTTCCATTTA 57.541 30.769 0.00 0.00 0.00 1.40
3537 8208 6.959639 ACTTGTCACATAACAGTTCCATTT 57.040 33.333 0.00 0.00 0.00 2.32
3550 8221 8.040727 TGCATATTACTCTGTAACTTGTCACAT 58.959 33.333 0.00 0.00 0.00 3.21
3557 8228 9.672673 AAGAACATGCATATTACTCTGTAACTT 57.327 29.630 0.00 0.00 0.00 2.66
3596 8267 0.171903 CCATTGTGTTAGGCTGCAGC 59.828 55.000 30.88 30.88 41.14 5.25
3731 8402 2.125912 ACCTCGATGTGCAGCGTC 60.126 61.111 9.62 0.00 41.48 5.19
3798 8469 8.236586 GCATCATTCAGTTAGATACAAAACACA 58.763 33.333 0.00 0.00 0.00 3.72
3820 8491 4.497006 GCTGTTCATACCAATGAGTGCATC 60.497 45.833 0.00 0.00 42.97 3.91
3916 8587 1.371183 CTTTCGACTGGACTGGCCA 59.629 57.895 4.71 4.71 46.96 5.36
3981 8652 5.200368 AGGAATGCAAACTCGTTTTGATT 57.800 34.783 14.02 10.71 46.76 2.57
3997 8668 1.066143 AGGCCACGTACTTGAGGAATG 60.066 52.381 5.01 0.00 0.00 2.67
4088 8759 3.265221 TCTTTGCCATCTCATTCACCTCT 59.735 43.478 0.00 0.00 0.00 3.69
4109 8780 3.525268 AATGGCGGACAATCCAATTTC 57.475 42.857 0.00 0.00 35.91 2.17
4119 8790 0.887247 CATGGTTGAAATGGCGGACA 59.113 50.000 0.00 0.00 0.00 4.02
4124 8795 1.404583 GCAGTCCATGGTTGAAATGGC 60.405 52.381 12.58 2.19 43.70 4.40
4126 8797 4.264253 TCTAGCAGTCCATGGTTGAAATG 58.736 43.478 12.58 2.70 38.04 2.32
4133 8804 0.043334 ACCCTCTAGCAGTCCATGGT 59.957 55.000 12.58 0.00 43.56 3.55
4173 8844 6.716628 ACTTTAGGAGAGATCAAAACATTGCA 59.283 34.615 0.00 0.00 0.00 4.08
4191 8862 3.260128 ACACCGAGAAAGGGTACTTTAGG 59.740 47.826 0.00 0.00 46.51 2.69
4308 8981 6.655848 TCACACACCTTACAAACTAAACAACT 59.344 34.615 0.00 0.00 0.00 3.16
4380 9054 7.639113 TTACTCATATAAACCCAAGGCTTTG 57.361 36.000 0.68 0.68 0.00 2.77
4406 9080 8.336801 AGGTTGTTCTGTATAGTTGAAAATCC 57.663 34.615 0.00 0.00 0.00 3.01
4476 9151 2.226674 CGGCTCGTGCTAGAGATTGATA 59.773 50.000 9.61 0.00 40.57 2.15
4477 9152 1.000827 CGGCTCGTGCTAGAGATTGAT 60.001 52.381 9.61 0.00 40.57 2.57
4536 9212 6.469782 AGTTTCATTCACAAGATGGTTTGT 57.530 33.333 0.00 0.00 41.77 2.83
4593 9281 2.094182 TGTGCTCCTTCTCCGTCATAAC 60.094 50.000 0.00 0.00 0.00 1.89
4596 9284 0.534412 CTGTGCTCCTTCTCCGTCAT 59.466 55.000 0.00 0.00 0.00 3.06
4637 9325 0.984230 CTTGGGTGCCTTCCTGACTA 59.016 55.000 0.00 0.00 0.00 2.59
4685 9373 1.215382 GGGTCATTTTTCCGGCAGC 59.785 57.895 0.00 0.00 0.00 5.25
4689 9377 0.738389 CATCGGGGTCATTTTTCCGG 59.262 55.000 0.00 0.00 42.44 5.14
4690 9378 0.738389 CCATCGGGGTCATTTTTCCG 59.262 55.000 0.00 0.00 43.42 4.30
4741 9429 8.047413 TCTTATTTATTCCCTTTTCGGTGTTC 57.953 34.615 0.00 0.00 0.00 3.18
4743 9431 7.399634 TCTCTTATTTATTCCCTTTTCGGTGT 58.600 34.615 0.00 0.00 0.00 4.16
4770 9459 4.616802 CGTGTTGATTTGTCAAGGTAATGC 59.383 41.667 0.00 0.00 0.00 3.56
4773 9462 5.818336 TCTTCGTGTTGATTTGTCAAGGTAA 59.182 36.000 0.00 0.00 0.00 2.85
4778 9467 6.258947 TGTGTATCTTCGTGTTGATTTGTCAA 59.741 34.615 0.00 0.00 0.00 3.18
4779 9468 5.755861 TGTGTATCTTCGTGTTGATTTGTCA 59.244 36.000 0.00 0.00 0.00 3.58
4806 9495 0.968393 TTCTAATTTGGGGTGGGCGC 60.968 55.000 0.00 0.00 0.00 6.53
4807 9496 1.102978 CTTCTAATTTGGGGTGGGCG 58.897 55.000 0.00 0.00 0.00 6.13
4808 9497 1.006639 TCCTTCTAATTTGGGGTGGGC 59.993 52.381 0.00 0.00 0.00 5.36
4821 9510 4.600547 TCCATACTATCTCGGGTCCTTCTA 59.399 45.833 0.00 0.00 0.00 2.10
4823 9512 3.506844 GTCCATACTATCTCGGGTCCTTC 59.493 52.174 0.00 0.00 0.00 3.46
4840 9529 1.774217 ATATGGGGGCGGTGTCCAT 60.774 57.895 0.00 0.00 43.08 3.41
4845 9534 0.690192 TGTATGATATGGGGGCGGTG 59.310 55.000 0.00 0.00 0.00 4.94
4849 9538 6.561519 ACTATTAGTGTATGATATGGGGGC 57.438 41.667 0.00 0.00 0.00 5.80
4860 9549 6.016943 GCTGGTTCTCTCGACTATTAGTGTAT 60.017 42.308 0.00 0.00 0.00 2.29
4861 9550 5.296283 GCTGGTTCTCTCGACTATTAGTGTA 59.704 44.000 0.00 0.00 0.00 2.90
4866 9555 5.854010 AATGCTGGTTCTCTCGACTATTA 57.146 39.130 0.00 0.00 0.00 0.98
4867 9556 4.744795 AATGCTGGTTCTCTCGACTATT 57.255 40.909 0.00 0.00 0.00 1.73
4874 9563 3.626670 CCATCAGAAATGCTGGTTCTCTC 59.373 47.826 0.00 0.00 44.98 3.20
4884 9573 4.914983 TCCATATCTCCCATCAGAAATGC 58.085 43.478 0.00 0.00 0.00 3.56
4886 9575 4.539293 CCCTCCATATCTCCCATCAGAAAT 59.461 45.833 0.00 0.00 0.00 2.17
4887 9576 3.912528 CCCTCCATATCTCCCATCAGAAA 59.087 47.826 0.00 0.00 0.00 2.52
4907 9596 1.302192 TGGCAGCGAAACAGTACCC 60.302 57.895 0.00 0.00 0.00 3.69
4914 9603 2.480555 CGATGGTGGCAGCGAAAC 59.519 61.111 12.58 2.54 35.87 2.78
4919 9608 4.819761 TCTCGCGATGGTGGCAGC 62.820 66.667 10.36 10.30 0.00 5.25
4931 9620 0.930742 CGCGTGGATTCTACTCTCGC 60.931 60.000 0.00 0.00 36.22 5.03
4943 9632 2.203084 TCTTTGGTTGCGCGTGGA 60.203 55.556 8.43 0.00 0.00 4.02
4944 9633 2.051345 GTCTTTGGTTGCGCGTGG 60.051 61.111 8.43 0.00 0.00 4.94
4947 9636 1.495951 GTAGGTCTTTGGTTGCGCG 59.504 57.895 0.00 0.00 0.00 6.86
4950 9639 4.001652 GTCTTAGGTAGGTCTTTGGTTGC 58.998 47.826 0.00 0.00 0.00 4.17
4975 9664 8.234136 TGTACTTGTGGGTTATCAGTATCTAG 57.766 38.462 0.00 0.00 0.00 2.43
4984 9673 2.841881 TCCCCTGTACTTGTGGGTTATC 59.158 50.000 11.04 0.00 39.31 1.75
4985 9674 2.923908 TCCCCTGTACTTGTGGGTTAT 58.076 47.619 11.04 0.00 39.31 1.89
4986 9675 2.419457 TCCCCTGTACTTGTGGGTTA 57.581 50.000 11.04 0.27 39.31 2.85
4987 9676 1.633945 GATCCCCTGTACTTGTGGGTT 59.366 52.381 11.04 3.96 39.31 4.11
4988 9677 1.286248 GATCCCCTGTACTTGTGGGT 58.714 55.000 11.04 0.00 39.31 4.51
4989 9678 1.285280 TGATCCCCTGTACTTGTGGG 58.715 55.000 0.00 0.80 40.59 4.61
4990 9679 3.652057 ATTGATCCCCTGTACTTGTGG 57.348 47.619 0.00 0.00 0.00 4.17
4991 9680 4.335416 ACAATTGATCCCCTGTACTTGTG 58.665 43.478 13.59 0.00 0.00 3.33
4992 9681 4.657814 ACAATTGATCCCCTGTACTTGT 57.342 40.909 13.59 0.00 0.00 3.16
4993 9682 4.576463 GCTACAATTGATCCCCTGTACTTG 59.424 45.833 13.59 0.00 0.00 3.16
4994 9683 4.385310 GGCTACAATTGATCCCCTGTACTT 60.385 45.833 13.59 0.00 0.00 2.24
4995 9684 3.136626 GGCTACAATTGATCCCCTGTACT 59.863 47.826 13.59 0.00 0.00 2.73
4996 9685 3.136626 AGGCTACAATTGATCCCCTGTAC 59.863 47.826 13.59 0.00 0.00 2.90
4997 9686 3.391296 GAGGCTACAATTGATCCCCTGTA 59.609 47.826 13.59 0.00 0.00 2.74
4998 9687 2.173569 GAGGCTACAATTGATCCCCTGT 59.826 50.000 13.59 0.00 0.00 4.00
4999 9688 2.441001 AGAGGCTACAATTGATCCCCTG 59.559 50.000 13.59 0.00 0.00 4.45
5000 9689 2.781667 AGAGGCTACAATTGATCCCCT 58.218 47.619 13.59 11.39 0.00 4.79
5001 9690 3.584733 AAGAGGCTACAATTGATCCCC 57.415 47.619 13.59 6.75 0.00 4.81
5002 9691 3.561725 CGAAAGAGGCTACAATTGATCCC 59.438 47.826 13.59 8.53 0.00 3.85
5003 9692 4.442706 TCGAAAGAGGCTACAATTGATCC 58.557 43.478 13.59 9.59 34.84 3.36
5010 9699 7.122353 ACTCTTACTTATCGAAAGAGGCTACAA 59.878 37.037 21.76 3.83 46.82 2.41
5011 9700 6.602406 ACTCTTACTTATCGAAAGAGGCTACA 59.398 38.462 21.76 0.00 46.82 2.74
5012 9701 6.913673 CACTCTTACTTATCGAAAGAGGCTAC 59.086 42.308 21.76 0.00 46.82 3.58
5013 9702 6.602406 ACACTCTTACTTATCGAAAGAGGCTA 59.398 38.462 21.76 0.00 46.82 3.93
5014 9703 5.419471 ACACTCTTACTTATCGAAAGAGGCT 59.581 40.000 21.76 8.45 46.82 4.58
5015 9704 5.652518 ACACTCTTACTTATCGAAAGAGGC 58.347 41.667 21.76 0.00 46.82 4.70
5016 9705 6.853720 TGACACTCTTACTTATCGAAAGAGG 58.146 40.000 21.76 15.05 46.82 3.69
5019 9708 7.148623 GGGTTTGACACTCTTACTTATCGAAAG 60.149 40.741 0.00 0.00 0.00 2.62
5020 9709 6.647895 GGGTTTGACACTCTTACTTATCGAAA 59.352 38.462 0.00 0.00 0.00 3.46
5021 9710 6.161381 GGGTTTGACACTCTTACTTATCGAA 58.839 40.000 0.00 0.00 0.00 3.71
5022 9711 5.244402 TGGGTTTGACACTCTTACTTATCGA 59.756 40.000 0.00 0.00 0.00 3.59
5023 9712 5.475719 TGGGTTTGACACTCTTACTTATCG 58.524 41.667 0.00 0.00 0.00 2.92
5024 9713 6.128634 CGTTGGGTTTGACACTCTTACTTATC 60.129 42.308 0.00 0.00 0.00 1.75
5025 9714 5.699458 CGTTGGGTTTGACACTCTTACTTAT 59.301 40.000 0.00 0.00 0.00 1.73
5026 9715 5.051816 CGTTGGGTTTGACACTCTTACTTA 58.948 41.667 0.00 0.00 0.00 2.24
5027 9716 3.875134 CGTTGGGTTTGACACTCTTACTT 59.125 43.478 0.00 0.00 0.00 2.24
5028 9717 3.133362 TCGTTGGGTTTGACACTCTTACT 59.867 43.478 0.00 0.00 0.00 2.24
5029 9718 3.460103 TCGTTGGGTTTGACACTCTTAC 58.540 45.455 0.00 0.00 0.00 2.34
5030 9719 3.493699 CCTCGTTGGGTTTGACACTCTTA 60.494 47.826 0.00 0.00 0.00 2.10
5031 9720 2.561569 CTCGTTGGGTTTGACACTCTT 58.438 47.619 0.00 0.00 0.00 2.85
5032 9721 1.202651 CCTCGTTGGGTTTGACACTCT 60.203 52.381 0.00 0.00 0.00 3.24
5033 9722 1.202604 TCCTCGTTGGGTTTGACACTC 60.203 52.381 0.00 0.00 36.20 3.51
5034 9723 0.834612 TCCTCGTTGGGTTTGACACT 59.165 50.000 0.00 0.00 36.20 3.55
5035 9724 1.226746 CTCCTCGTTGGGTTTGACAC 58.773 55.000 0.00 0.00 36.20 3.67
5036 9725 0.534203 GCTCCTCGTTGGGTTTGACA 60.534 55.000 0.00 0.00 36.20 3.58
5037 9726 0.250338 AGCTCCTCGTTGGGTTTGAC 60.250 55.000 0.00 0.00 36.20 3.18
5038 9727 1.344065 TAGCTCCTCGTTGGGTTTGA 58.656 50.000 0.00 0.00 36.20 2.69
5039 9728 2.178912 TTAGCTCCTCGTTGGGTTTG 57.821 50.000 0.00 0.00 36.20 2.93
5040 9729 2.552373 CCTTTAGCTCCTCGTTGGGTTT 60.552 50.000 0.00 0.00 36.20 3.27
5041 9730 1.003233 CCTTTAGCTCCTCGTTGGGTT 59.997 52.381 0.00 0.00 36.20 4.11
5042 9731 0.613777 CCTTTAGCTCCTCGTTGGGT 59.386 55.000 0.00 0.00 36.20 4.51
5043 9732 0.613777 ACCTTTAGCTCCTCGTTGGG 59.386 55.000 0.00 0.00 36.20 4.12
5044 9733 2.758979 TCTACCTTTAGCTCCTCGTTGG 59.241 50.000 0.00 0.00 37.10 3.77
5045 9734 4.174762 GTTCTACCTTTAGCTCCTCGTTG 58.825 47.826 0.00 0.00 0.00 4.10
5046 9735 3.830755 TGTTCTACCTTTAGCTCCTCGTT 59.169 43.478 0.00 0.00 0.00 3.85
5047 9736 3.428532 TGTTCTACCTTTAGCTCCTCGT 58.571 45.455 0.00 0.00 0.00 4.18
5048 9737 4.451629 TTGTTCTACCTTTAGCTCCTCG 57.548 45.455 0.00 0.00 0.00 4.63
5049 9738 8.966069 AATATTTGTTCTACCTTTAGCTCCTC 57.034 34.615 0.00 0.00 0.00 3.71
5050 9739 7.993758 GGAATATTTGTTCTACCTTTAGCTCCT 59.006 37.037 0.00 0.00 0.00 3.69
5051 9740 7.228906 GGGAATATTTGTTCTACCTTTAGCTCC 59.771 40.741 0.00 0.00 0.00 4.70
5052 9741 7.993758 AGGGAATATTTGTTCTACCTTTAGCTC 59.006 37.037 0.00 0.00 0.00 4.09
5053 9742 7.873195 AGGGAATATTTGTTCTACCTTTAGCT 58.127 34.615 0.00 0.00 0.00 3.32
5054 9743 7.773690 TGAGGGAATATTTGTTCTACCTTTAGC 59.226 37.037 0.00 0.00 0.00 3.09
5055 9744 9.681062 TTGAGGGAATATTTGTTCTACCTTTAG 57.319 33.333 0.00 0.00 0.00 1.85
5056 9745 9.681062 CTTGAGGGAATATTTGTTCTACCTTTA 57.319 33.333 0.00 0.00 0.00 1.85
5057 9746 8.170730 ACTTGAGGGAATATTTGTTCTACCTTT 58.829 33.333 0.00 0.00 0.00 3.11
5058 9747 7.699878 ACTTGAGGGAATATTTGTTCTACCTT 58.300 34.615 0.00 0.00 0.00 3.50
5059 9748 7.272144 ACTTGAGGGAATATTTGTTCTACCT 57.728 36.000 0.00 0.00 0.00 3.08
5060 9749 7.939784 AACTTGAGGGAATATTTGTTCTACC 57.060 36.000 0.00 0.00 0.00 3.18
5064 9753 9.503427 CGATAAAACTTGAGGGAATATTTGTTC 57.497 33.333 0.00 0.00 0.00 3.18
5065 9754 9.238368 TCGATAAAACTTGAGGGAATATTTGTT 57.762 29.630 0.00 0.00 0.00 2.83
5066 9755 8.674607 GTCGATAAAACTTGAGGGAATATTTGT 58.325 33.333 0.00 0.00 0.00 2.83
5067 9756 8.129211 GGTCGATAAAACTTGAGGGAATATTTG 58.871 37.037 0.00 0.00 0.00 2.32
5068 9757 7.832187 TGGTCGATAAAACTTGAGGGAATATTT 59.168 33.333 0.00 0.00 0.00 1.40
5069 9758 7.282450 GTGGTCGATAAAACTTGAGGGAATATT 59.718 37.037 0.00 0.00 0.00 1.28
5070 9759 6.766467 GTGGTCGATAAAACTTGAGGGAATAT 59.234 38.462 0.00 0.00 0.00 1.28
5071 9760 6.110707 GTGGTCGATAAAACTTGAGGGAATA 58.889 40.000 0.00 0.00 0.00 1.75
5072 9761 4.941873 GTGGTCGATAAAACTTGAGGGAAT 59.058 41.667 0.00 0.00 0.00 3.01
5073 9762 4.320870 GTGGTCGATAAAACTTGAGGGAA 58.679 43.478 0.00 0.00 0.00 3.97
5074 9763 3.307199 GGTGGTCGATAAAACTTGAGGGA 60.307 47.826 0.00 0.00 0.00 4.20
5075 9764 3.007635 GGTGGTCGATAAAACTTGAGGG 58.992 50.000 0.00 0.00 0.00 4.30
5076 9765 2.671396 CGGTGGTCGATAAAACTTGAGG 59.329 50.000 0.00 0.00 42.43 3.86
5077 9766 3.581755 TCGGTGGTCGATAAAACTTGAG 58.418 45.455 0.00 0.00 43.74 3.02
5078 9767 3.663995 TCGGTGGTCGATAAAACTTGA 57.336 42.857 0.00 0.00 43.74 3.02
5089 9778 2.538333 CGTAGAGTTGTATCGGTGGTCG 60.538 54.545 0.00 0.00 40.90 4.79
5090 9779 2.793933 GCGTAGAGTTGTATCGGTGGTC 60.794 54.545 0.00 0.00 0.00 4.02
5091 9780 1.133790 GCGTAGAGTTGTATCGGTGGT 59.866 52.381 0.00 0.00 0.00 4.16
5092 9781 1.133598 TGCGTAGAGTTGTATCGGTGG 59.866 52.381 0.00 0.00 0.00 4.61
5093 9782 2.182825 GTGCGTAGAGTTGTATCGGTG 58.817 52.381 0.00 0.00 0.00 4.94
5094 9783 1.202110 CGTGCGTAGAGTTGTATCGGT 60.202 52.381 0.00 0.00 0.00 4.69
5095 9784 1.463805 CGTGCGTAGAGTTGTATCGG 58.536 55.000 0.00 0.00 0.00 4.18
5096 9785 0.838229 GCGTGCGTAGAGTTGTATCG 59.162 55.000 0.00 0.00 0.00 2.92
5097 9786 2.190325 AGCGTGCGTAGAGTTGTATC 57.810 50.000 0.00 0.00 0.00 2.24
5098 9787 2.649331 AAGCGTGCGTAGAGTTGTAT 57.351 45.000 0.00 0.00 0.00 2.29
5099 9788 3.236816 GTTAAGCGTGCGTAGAGTTGTA 58.763 45.455 0.00 0.00 0.00 2.41
5100 9789 2.056577 GTTAAGCGTGCGTAGAGTTGT 58.943 47.619 0.00 0.00 0.00 3.32
5101 9790 1.057285 CGTTAAGCGTGCGTAGAGTTG 59.943 52.381 0.00 0.00 35.54 3.16
5102 9791 1.334054 CGTTAAGCGTGCGTAGAGTT 58.666 50.000 0.00 0.00 35.54 3.01
5103 9792 3.011513 CGTTAAGCGTGCGTAGAGT 57.988 52.632 0.00 0.00 35.54 3.24
5114 9803 6.421801 TGTTCTAGGTAAAGTGAACGTTAAGC 59.578 38.462 0.00 0.00 40.93 3.09
5115 9804 7.935338 TGTTCTAGGTAAAGTGAACGTTAAG 57.065 36.000 0.00 0.00 40.93 1.85
5116 9805 7.981225 ACTTGTTCTAGGTAAAGTGAACGTTAA 59.019 33.333 0.00 0.00 40.93 2.01
5117 9806 7.491682 ACTTGTTCTAGGTAAAGTGAACGTTA 58.508 34.615 0.00 0.00 40.93 3.18
5118 9807 6.343703 ACTTGTTCTAGGTAAAGTGAACGTT 58.656 36.000 0.00 0.00 40.93 3.99
5119 9808 5.910614 ACTTGTTCTAGGTAAAGTGAACGT 58.089 37.500 0.00 0.00 40.93 3.99
5120 9809 7.811236 TCATACTTGTTCTAGGTAAAGTGAACG 59.189 37.037 12.36 0.00 40.93 3.95
5121 9810 9.485206 TTCATACTTGTTCTAGGTAAAGTGAAC 57.515 33.333 12.36 0.00 39.18 3.18
5123 9812 9.485206 GTTTCATACTTGTTCTAGGTAAAGTGA 57.515 33.333 12.36 3.36 34.76 3.41
5124 9813 9.490379 AGTTTCATACTTGTTCTAGGTAAAGTG 57.510 33.333 12.36 1.63 34.76 3.16
5130 9819 9.091220 ACTTCTAGTTTCATACTTGTTCTAGGT 57.909 33.333 0.00 0.00 38.33 3.08
5143 9832 8.648693 ACACCTACAAAGTACTTCTAGTTTCAT 58.351 33.333 8.95 0.00 0.00 2.57
5144 9833 8.015185 ACACCTACAAAGTACTTCTAGTTTCA 57.985 34.615 8.95 0.00 0.00 2.69
5145 9834 8.883954 AACACCTACAAAGTACTTCTAGTTTC 57.116 34.615 8.95 0.00 0.00 2.78
5146 9835 9.676861 AAAACACCTACAAAGTACTTCTAGTTT 57.323 29.630 8.95 10.09 0.00 2.66
5147 9836 9.676861 AAAAACACCTACAAAGTACTTCTAGTT 57.323 29.630 8.95 4.93 0.00 2.24
5148 9837 9.106070 CAAAAACACCTACAAAGTACTTCTAGT 57.894 33.333 8.95 10.55 0.00 2.57
5149 9838 8.557029 CCAAAAACACCTACAAAGTACTTCTAG 58.443 37.037 8.95 10.33 0.00 2.43
5150 9839 8.266473 TCCAAAAACACCTACAAAGTACTTCTA 58.734 33.333 8.95 0.94 0.00 2.10
5151 9840 7.066645 GTCCAAAAACACCTACAAAGTACTTCT 59.933 37.037 8.95 0.00 0.00 2.85
5152 9841 7.148205 TGTCCAAAAACACCTACAAAGTACTTC 60.148 37.037 8.95 0.00 0.00 3.01
5153 9842 6.660094 TGTCCAAAAACACCTACAAAGTACTT 59.340 34.615 1.12 1.12 0.00 2.24
5154 9843 6.181908 TGTCCAAAAACACCTACAAAGTACT 58.818 36.000 0.00 0.00 0.00 2.73
5155 9844 6.439675 TGTCCAAAAACACCTACAAAGTAC 57.560 37.500 0.00 0.00 0.00 2.73
5156 9845 5.591067 CCTGTCCAAAAACACCTACAAAGTA 59.409 40.000 0.00 0.00 0.00 2.24
5157 9846 4.401202 CCTGTCCAAAAACACCTACAAAGT 59.599 41.667 0.00 0.00 0.00 2.66
5158 9847 4.401202 ACCTGTCCAAAAACACCTACAAAG 59.599 41.667 0.00 0.00 0.00 2.77
5159 9848 4.345854 ACCTGTCCAAAAACACCTACAAA 58.654 39.130 0.00 0.00 0.00 2.83
5160 9849 3.970842 ACCTGTCCAAAAACACCTACAA 58.029 40.909 0.00 0.00 0.00 2.41
5161 9850 3.655615 ACCTGTCCAAAAACACCTACA 57.344 42.857 0.00 0.00 0.00 2.74
5162 9851 4.678622 CAAACCTGTCCAAAAACACCTAC 58.321 43.478 0.00 0.00 0.00 3.18
5163 9852 3.131400 GCAAACCTGTCCAAAAACACCTA 59.869 43.478 0.00 0.00 0.00 3.08
5164 9853 2.093711 GCAAACCTGTCCAAAAACACCT 60.094 45.455 0.00 0.00 0.00 4.00
5165 9854 2.276201 GCAAACCTGTCCAAAAACACC 58.724 47.619 0.00 0.00 0.00 4.16
5166 9855 2.966050 TGCAAACCTGTCCAAAAACAC 58.034 42.857 0.00 0.00 0.00 3.32
5167 9856 3.259374 TCTTGCAAACCTGTCCAAAAACA 59.741 39.130 0.00 0.00 0.00 2.83
5168 9857 3.855858 TCTTGCAAACCTGTCCAAAAAC 58.144 40.909 0.00 0.00 0.00 2.43
5169 9858 4.751767 ATCTTGCAAACCTGTCCAAAAA 57.248 36.364 0.00 0.00 0.00 1.94
5170 9859 5.860941 TTATCTTGCAAACCTGTCCAAAA 57.139 34.783 0.00 0.00 0.00 2.44
5171 9860 7.531857 TTATTATCTTGCAAACCTGTCCAAA 57.468 32.000 0.00 0.00 0.00 3.28
5172 9861 7.450014 TCTTTATTATCTTGCAAACCTGTCCAA 59.550 33.333 0.00 0.00 0.00 3.53
5173 9862 6.945435 TCTTTATTATCTTGCAAACCTGTCCA 59.055 34.615 0.00 0.00 0.00 4.02
5174 9863 7.391148 TCTTTATTATCTTGCAAACCTGTCC 57.609 36.000 0.00 0.00 0.00 4.02
5175 9864 6.969473 GCTCTTTATTATCTTGCAAACCTGTC 59.031 38.462 0.00 0.00 0.00 3.51
5176 9865 6.434028 TGCTCTTTATTATCTTGCAAACCTGT 59.566 34.615 0.00 0.00 0.00 4.00
5177 9866 6.749118 GTGCTCTTTATTATCTTGCAAACCTG 59.251 38.462 0.00 0.00 0.00 4.00
5178 9867 6.434028 TGTGCTCTTTATTATCTTGCAAACCT 59.566 34.615 0.00 0.00 0.00 3.50
5179 9868 6.620678 TGTGCTCTTTATTATCTTGCAAACC 58.379 36.000 0.00 0.00 0.00 3.27
5180 9869 9.787532 TTATGTGCTCTTTATTATCTTGCAAAC 57.212 29.630 0.00 0.00 0.00 2.93
5192 9881 9.807649 CCTGCTTTTTATTTATGTGCTCTTTAT 57.192 29.630 0.00 0.00 0.00 1.40
5193 9882 8.250332 CCCTGCTTTTTATTTATGTGCTCTTTA 58.750 33.333 0.00 0.00 0.00 1.85
5194 9883 7.099120 CCCTGCTTTTTATTTATGTGCTCTTT 58.901 34.615 0.00 0.00 0.00 2.52
5195 9884 6.351286 CCCCTGCTTTTTATTTATGTGCTCTT 60.351 38.462 0.00 0.00 0.00 2.85
5196 9885 5.127682 CCCCTGCTTTTTATTTATGTGCTCT 59.872 40.000 0.00 0.00 0.00 4.09
5197 9886 5.351458 CCCCTGCTTTTTATTTATGTGCTC 58.649 41.667 0.00 0.00 0.00 4.26
5198 9887 4.162131 CCCCCTGCTTTTTATTTATGTGCT 59.838 41.667 0.00 0.00 0.00 4.40
5199 9888 4.081142 ACCCCCTGCTTTTTATTTATGTGC 60.081 41.667 0.00 0.00 0.00 4.57
5200 9889 5.675684 ACCCCCTGCTTTTTATTTATGTG 57.324 39.130 0.00 0.00 0.00 3.21
5201 9890 5.546110 ACAACCCCCTGCTTTTTATTTATGT 59.454 36.000 0.00 0.00 0.00 2.29
5202 9891 6.048732 ACAACCCCCTGCTTTTTATTTATG 57.951 37.500 0.00 0.00 0.00 1.90
5203 9892 6.696042 AACAACCCCCTGCTTTTTATTTAT 57.304 33.333 0.00 0.00 0.00 1.40
5204 9893 6.502074 AAACAACCCCCTGCTTTTTATTTA 57.498 33.333 0.00 0.00 0.00 1.40
5205 9894 5.381184 AAACAACCCCCTGCTTTTTATTT 57.619 34.783 0.00 0.00 0.00 1.40
5206 9895 5.841783 TCTAAACAACCCCCTGCTTTTTATT 59.158 36.000 0.00 0.00 0.00 1.40
5207 9896 5.399113 TCTAAACAACCCCCTGCTTTTTAT 58.601 37.500 0.00 0.00 0.00 1.40
5208 9897 4.805744 TCTAAACAACCCCCTGCTTTTTA 58.194 39.130 0.00 0.00 0.00 1.52
5209 9898 3.648739 TCTAAACAACCCCCTGCTTTTT 58.351 40.909 0.00 0.00 0.00 1.94
5210 9899 3.322191 TCTAAACAACCCCCTGCTTTT 57.678 42.857 0.00 0.00 0.00 2.27
5211 9900 3.542969 ATCTAAACAACCCCCTGCTTT 57.457 42.857 0.00 0.00 0.00 3.51
5212 9901 4.668138 TTATCTAAACAACCCCCTGCTT 57.332 40.909 0.00 0.00 0.00 3.91
5213 9902 4.600062 CTTTATCTAAACAACCCCCTGCT 58.400 43.478 0.00 0.00 0.00 4.24
5214 9903 4.983671 CTTTATCTAAACAACCCCCTGC 57.016 45.455 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.