Multiple sequence alignment - TraesCS7A01G379500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G379500 chr7A 100.000 4429 0 0 1 4429 555437421 555441849 0.000000e+00 8179
1 TraesCS7A01G379500 chr7A 86.460 1706 193 20 1 1682 555625773 555624082 0.000000e+00 1836
2 TraesCS7A01G379500 chr7A 85.286 1733 240 9 2509 4238 555623038 555621318 0.000000e+00 1773
3 TraesCS7A01G379500 chr7A 73.589 886 208 19 460 1337 554502760 554501893 2.570000e-82 316
4 TraesCS7A01G379500 chr7D 91.393 4450 327 33 1 4429 486306521 486310935 0.000000e+00 6045
5 TraesCS7A01G379500 chr7D 86.268 2039 243 16 1 2015 486731593 486729568 0.000000e+00 2180
6 TraesCS7A01G379500 chr7D 87.432 1281 143 12 2509 3785 486728794 486727528 0.000000e+00 1458
7 TraesCS7A01G379500 chr7D 90.057 523 28 4 2009 2509 549104823 549105343 0.000000e+00 656
8 TraesCS7A01G379500 chr7D 94.375 320 17 1 2509 2827 119753583 119753902 1.430000e-134 490
9 TraesCS7A01G379500 chr7D 87.945 365 19 4 2167 2509 110449641 110449280 1.480000e-109 407
10 TraesCS7A01G379500 chr7D 74.745 883 165 34 459 1312 486107950 486107097 4.240000e-90 342
11 TraesCS7A01G379500 chr7B 90.625 1728 157 5 2509 4235 514255253 514256976 0.000000e+00 2289
12 TraesCS7A01G379500 chr7B 86.974 2042 228 19 1 2015 516446149 516444119 0.000000e+00 2263
13 TraesCS7A01G379500 chr7B 85.425 1434 191 11 2509 3939 516443348 516441930 0.000000e+00 1474
14 TraesCS7A01G379500 chr7B 90.116 1032 95 3 794 1819 514249848 514250878 0.000000e+00 1334
15 TraesCS7A01G379500 chr7B 88.119 808 70 8 1 802 514248594 514249381 0.000000e+00 937
16 TraesCS7A01G379500 chr7B 91.909 482 32 4 1815 2295 514253501 514253976 0.000000e+00 667
17 TraesCS7A01G379500 chr7B 89.447 199 21 0 4231 4429 514265132 514265330 7.350000e-63 252
18 TraesCS7A01G379500 chr7B 85.897 234 9 7 2297 2509 514255064 514255294 1.240000e-55 228
19 TraesCS7A01G379500 chr3D 89.064 823 59 17 2009 2827 508570481 508569686 0.000000e+00 992
20 TraesCS7A01G379500 chrUn 90.057 523 27 5 2009 2509 395146580 395146061 0.000000e+00 654
21 TraesCS7A01G379500 chr5D 89.575 518 28 5 2013 2508 25525787 25525274 6.250000e-178 634
22 TraesCS7A01G379500 chr5D 89.593 442 23 3 2090 2509 173558616 173559056 1.400000e-149 540
23 TraesCS7A01G379500 chr5D 94.688 320 16 1 2509 2827 173559015 173559334 3.080000e-136 496
24 TraesCS7A01G379500 chr2D 89.189 518 30 5 2013 2509 487538565 487538053 1.350000e-174 623
25 TraesCS7A01G379500 chr2D 89.189 518 29 6 2013 2508 57786279 57786791 4.870000e-174 621
26 TraesCS7A01G379500 chr2D 93.350 406 23 4 2013 2417 528132696 528133098 8.200000e-167 597
27 TraesCS7A01G379500 chr6D 89.379 499 27 5 2013 2489 367118961 367118467 4.900000e-169 604
28 TraesCS7A01G379500 chr6D 89.379 499 26 5 2013 2489 101848429 101847936 1.760000e-168 603
29 TraesCS7A01G379500 chr6D 93.596 406 21 4 2013 2417 273521389 273521790 6.340000e-168 601
30 TraesCS7A01G379500 chr4D 94.375 320 17 1 2509 2827 150602469 150602788 1.430000e-134 490


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G379500 chr7A 555437421 555441849 4428 False 8179.0 8179 100.0000 1 4429 1 chr7A.!!$F1 4428
1 TraesCS7A01G379500 chr7A 555621318 555625773 4455 True 1804.5 1836 85.8730 1 4238 2 chr7A.!!$R2 4237
2 TraesCS7A01G379500 chr7A 554501893 554502760 867 True 316.0 316 73.5890 460 1337 1 chr7A.!!$R1 877
3 TraesCS7A01G379500 chr7D 486306521 486310935 4414 False 6045.0 6045 91.3930 1 4429 1 chr7D.!!$F2 4428
4 TraesCS7A01G379500 chr7D 486727528 486731593 4065 True 1819.0 2180 86.8500 1 3785 2 chr7D.!!$R3 3784
5 TraesCS7A01G379500 chr7D 549104823 549105343 520 False 656.0 656 90.0570 2009 2509 1 chr7D.!!$F3 500
6 TraesCS7A01G379500 chr7D 486107097 486107950 853 True 342.0 342 74.7450 459 1312 1 chr7D.!!$R2 853
7 TraesCS7A01G379500 chr7B 516441930 516446149 4219 True 1868.5 2263 86.1995 1 3939 2 chr7B.!!$R1 3938
8 TraesCS7A01G379500 chr7B 514248594 514256976 8382 False 1091.0 2289 89.3332 1 4235 5 chr7B.!!$F2 4234
9 TraesCS7A01G379500 chr3D 508569686 508570481 795 True 992.0 992 89.0640 2009 2827 1 chr3D.!!$R1 818
10 TraesCS7A01G379500 chrUn 395146061 395146580 519 True 654.0 654 90.0570 2009 2509 1 chrUn.!!$R1 500
11 TraesCS7A01G379500 chr5D 25525274 25525787 513 True 634.0 634 89.5750 2013 2508 1 chr5D.!!$R1 495
12 TraesCS7A01G379500 chr5D 173558616 173559334 718 False 518.0 540 92.1405 2090 2827 2 chr5D.!!$F1 737
13 TraesCS7A01G379500 chr2D 487538053 487538565 512 True 623.0 623 89.1890 2013 2509 1 chr2D.!!$R1 496
14 TraesCS7A01G379500 chr2D 57786279 57786791 512 False 621.0 621 89.1890 2013 2508 1 chr2D.!!$F1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 536 0.179045 GGCGCTACAATGGTGAGGAT 60.179 55.0 7.64 0.0 0.00 3.24 F
1013 1512 0.179127 ATCGACATGAGCGACCAGTG 60.179 55.0 15.36 0.0 40.94 3.66 F
1880 5046 0.041833 AGGCTCCTCCTTACAGCTCA 59.958 55.0 0.00 0.0 44.75 4.26 F
2333 6597 0.407918 TTTCAGCCCCCACCCTAAAG 59.592 55.0 0.00 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 4983 0.034670 CTCTGGGGAAGGCTGAAAGG 60.035 60.0 0.00 0.0 0.0 3.11 R
2317 6576 0.323451 GAACTTTAGGGTGGGGGCTG 60.323 60.0 0.00 0.0 0.0 4.85 R
2837 8402 0.467804 TGTGTCAGGCTGCAGTACAA 59.532 50.0 16.64 0.0 0.0 2.41 R
4323 9897 0.390472 GAAAGTGCCTCGGACTCTGG 60.390 60.0 0.00 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 9.768662 AAATTTACTAGTTGAACCTTACGAAGA 57.231 29.630 0.00 0.00 0.00 2.87
102 103 8.672815 ACTAGTTGAACCTTACGAAGAGTATAC 58.327 37.037 0.00 0.00 34.88 1.47
134 135 5.978934 ACAGGTAGTGTTCGTAAGTTTTG 57.021 39.130 0.00 0.00 34.94 2.44
139 140 8.060090 CAGGTAGTGTTCGTAAGTTTTGTTTAG 58.940 37.037 0.00 0.00 39.48 1.85
166 167 6.671614 AGTGTTCGTAAGTTTCAATCAACA 57.328 33.333 0.00 0.00 39.48 3.33
235 237 7.608308 ACTCTAGTGAAGAAAATCAATCTGC 57.392 36.000 0.00 0.00 32.46 4.26
340 357 3.295093 CTCCAGAGAGAGATAGTGCCAA 58.705 50.000 0.00 0.00 43.39 4.52
356 373 2.093181 TGCCAATGTACTATTGAGCGGT 60.093 45.455 15.37 0.00 32.05 5.68
380 397 4.750098 GTGCACTAGACTACAAAGCTTTCA 59.250 41.667 9.23 0.00 0.00 2.69
383 400 5.542779 CACTAGACTACAAAGCTTTCAGGT 58.457 41.667 9.23 7.31 0.00 4.00
416 433 3.135994 GGGAACTCGCTTCAAACACTTA 58.864 45.455 0.00 0.00 0.00 2.24
425 442 5.242838 TCGCTTCAAACACTTATTTTCCCAT 59.757 36.000 0.00 0.00 0.00 4.00
432 449 7.450014 TCAAACACTTATTTTCCCATCTAGCAA 59.550 33.333 0.00 0.00 0.00 3.91
507 527 4.483243 CCCACCCGGCGCTACAAT 62.483 66.667 7.64 0.00 0.00 2.71
510 530 3.712907 ACCCGGCGCTACAATGGT 61.713 61.111 7.64 0.00 0.00 3.55
516 536 0.179045 GGCGCTACAATGGTGAGGAT 60.179 55.000 7.64 0.00 0.00 3.24
562 582 1.078214 CGTGGCCACATCATCACCT 60.078 57.895 34.16 0.00 0.00 4.00
611 631 3.458163 CGCCTTCGCCTCCCACTA 61.458 66.667 0.00 0.00 0.00 2.74
744 764 1.334160 TTCACACCGTCAGCCTCTTA 58.666 50.000 0.00 0.00 0.00 2.10
837 1332 3.071747 AGAACCTCTCCTTCCTGAACAAC 59.928 47.826 0.00 0.00 0.00 3.32
865 1360 3.622826 CCCGGACCACCTTGTCGT 61.623 66.667 0.73 0.00 36.07 4.34
911 1407 2.355193 GCTCGCTCCAGTCCCTCTT 61.355 63.158 0.00 0.00 0.00 2.85
942 1438 1.328430 GGAAGATCCCCGACGACCTT 61.328 60.000 0.00 0.00 0.00 3.50
1013 1512 0.179127 ATCGACATGAGCGACCAGTG 60.179 55.000 15.36 0.00 40.94 3.66
1193 1710 1.865970 GGAGCGCATCATCTTCTTCAG 59.134 52.381 11.47 0.00 0.00 3.02
1224 1744 0.669318 GTGGAACCGATTGCGTGAGA 60.669 55.000 0.00 0.00 35.23 3.27
1314 1834 5.066117 GCAGATCAGTGACAACATCATCAAT 59.934 40.000 0.00 0.00 40.28 2.57
1361 1881 8.209802 TCCCTAGTTTTGTGGAACTATTCTTA 57.790 34.615 0.00 0.00 40.32 2.10
1556 2086 5.568620 AACTAGGGGGAAGCATAGTAATG 57.431 43.478 0.00 0.00 36.09 1.90
1631 2166 1.859302 AACAAACCCAAGTCAGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
1639 2174 1.073897 AAGTCAGGCAAGCAGGTCC 59.926 57.895 0.00 0.00 0.00 4.46
1658 2193 1.405256 CCGTGAAGAAGCTCAGCAGAT 60.405 52.381 0.00 0.00 0.00 2.90
1670 2205 3.181456 GCTCAGCAGATCCCTAAGAACAT 60.181 47.826 0.00 0.00 0.00 2.71
1675 2210 3.722147 CAGATCCCTAAGAACATCACGG 58.278 50.000 0.00 0.00 0.00 4.94
1774 2309 4.520111 CCACTTCTTTCCATGACATTGTCA 59.480 41.667 21.05 21.05 46.90 3.58
1781 2316 4.084011 TCCATGACATTGTCACACTTGA 57.916 40.909 21.19 10.59 45.65 3.02
1793 2328 5.101628 TGTCACACTTGATTTTCTGCAAAC 58.898 37.500 0.00 0.00 33.11 2.93
1880 5046 0.041833 AGGCTCCTCCTTACAGCTCA 59.958 55.000 0.00 0.00 44.75 4.26
1950 5116 7.385894 AGCACCTATTTTAGAGAGATCCATT 57.614 36.000 0.00 0.00 0.00 3.16
1994 5161 3.138468 AGTTTCTAAAGTTCCACAGCCCT 59.862 43.478 0.00 0.00 0.00 5.19
2076 5248 9.683069 CAACTTAGCAACAGATTCAAAGTTAAT 57.317 29.630 0.00 0.00 34.79 1.40
2088 5260 5.389859 TCAAAGTTAATGATTGGCACCTG 57.610 39.130 0.00 0.00 0.00 4.00
2174 5346 8.695284 CGATATACAGTTTCTATCTCTTTGCAC 58.305 37.037 0.00 0.00 0.00 4.57
2234 5406 8.078060 TCCTTAGATTGTCACAAGTCATGATA 57.922 34.615 0.00 0.00 0.00 2.15
2290 5463 4.790718 CCCTAGGGGCACTTTAATACTT 57.209 45.455 21.44 0.00 35.35 2.24
2295 5468 7.257053 CCCTAGGGGCACTTTAATACTTCATAT 60.257 40.741 21.44 0.00 35.35 1.78
2325 6587 0.854218 TACAAAGGTTTCAGCCCCCA 59.146 50.000 0.00 0.00 0.00 4.96
2333 6597 0.407918 TTTCAGCCCCCACCCTAAAG 59.592 55.000 0.00 0.00 0.00 1.85
2492 8040 8.627208 ATCTTCTCTGCTAATCTTGTCAAAAA 57.373 30.769 0.00 0.00 0.00 1.94
2499 8047 5.463061 TGCTAATCTTGTCAAAAAGCAAAGC 59.537 36.000 7.83 0.00 35.70 3.51
2508 8056 6.344500 TGTCAAAAAGCAAAGCAATTCCTAA 58.656 32.000 0.00 0.00 0.00 2.69
2509 8057 6.991531 TGTCAAAAAGCAAAGCAATTCCTAAT 59.008 30.769 0.00 0.00 0.00 1.73
2510 8058 7.171337 TGTCAAAAAGCAAAGCAATTCCTAATC 59.829 33.333 0.00 0.00 0.00 1.75
2511 8059 7.386025 GTCAAAAAGCAAAGCAATTCCTAATCT 59.614 33.333 0.00 0.00 0.00 2.40
2512 8060 7.933033 TCAAAAAGCAAAGCAATTCCTAATCTT 59.067 29.630 0.00 0.00 0.00 2.40
2513 8061 7.895975 AAAAGCAAAGCAATTCCTAATCTTC 57.104 32.000 0.00 0.00 0.00 2.87
2514 8062 6.847421 AAGCAAAGCAATTCCTAATCTTCT 57.153 33.333 0.00 0.00 0.00 2.85
2515 8063 6.448207 AGCAAAGCAATTCCTAATCTTCTC 57.552 37.500 0.00 0.00 0.00 2.87
2516 8064 6.186234 AGCAAAGCAATTCCTAATCTTCTCT 58.814 36.000 0.00 0.00 0.00 3.10
2517 8065 6.095160 AGCAAAGCAATTCCTAATCTTCTCTG 59.905 38.462 0.00 0.00 0.00 3.35
2518 8066 6.264088 CAAAGCAATTCCTAATCTTCTCTGC 58.736 40.000 0.00 0.00 0.00 4.26
2519 8067 5.370875 AGCAATTCCTAATCTTCTCTGCT 57.629 39.130 0.00 0.00 32.97 4.24
2520 8068 6.491714 AGCAATTCCTAATCTTCTCTGCTA 57.508 37.500 0.00 0.00 35.93 3.49
2521 8069 6.893583 AGCAATTCCTAATCTTCTCTGCTAA 58.106 36.000 0.00 0.00 35.93 3.09
2522 8070 7.516452 AGCAATTCCTAATCTTCTCTGCTAAT 58.484 34.615 0.00 0.00 35.93 1.73
2523 8071 7.661027 AGCAATTCCTAATCTTCTCTGCTAATC 59.339 37.037 0.00 0.00 35.93 1.75
2524 8072 7.661027 GCAATTCCTAATCTTCTCTGCTAATCT 59.339 37.037 0.00 0.00 0.00 2.40
2525 8073 9.558396 CAATTCCTAATCTTCTCTGCTAATCTT 57.442 33.333 0.00 0.00 0.00 2.40
2526 8074 9.558396 AATTCCTAATCTTCTCTGCTAATCTTG 57.442 33.333 0.00 0.00 0.00 3.02
2527 8075 7.667575 TCCTAATCTTCTCTGCTAATCTTGT 57.332 36.000 0.00 0.00 0.00 3.16
2528 8076 7.721402 TCCTAATCTTCTCTGCTAATCTTGTC 58.279 38.462 0.00 0.00 0.00 3.18
2529 8077 7.343057 TCCTAATCTTCTCTGCTAATCTTGTCA 59.657 37.037 0.00 0.00 0.00 3.58
2530 8078 7.984050 CCTAATCTTCTCTGCTAATCTTGTCAA 59.016 37.037 0.00 0.00 0.00 3.18
2531 8079 9.376075 CTAATCTTCTCTGCTAATCTTGTCAAA 57.624 33.333 0.00 0.00 0.00 2.69
2532 8080 8.627208 AATCTTCTCTGCTAATCTTGTCAAAA 57.373 30.769 0.00 0.00 0.00 2.44
2533 8081 8.627208 ATCTTCTCTGCTAATCTTGTCAAAAA 57.373 30.769 0.00 0.00 0.00 1.94
2534 8082 8.092521 TCTTCTCTGCTAATCTTGTCAAAAAG 57.907 34.615 0.00 0.00 0.00 2.27
2535 8083 6.246420 TCTCTGCTAATCTTGTCAAAAAGC 57.754 37.500 0.00 0.00 0.00 3.51
2536 8084 5.764686 TCTCTGCTAATCTTGTCAAAAAGCA 59.235 36.000 9.26 9.26 37.03 3.91
2537 8085 6.262944 TCTCTGCTAATCTTGTCAAAAAGCAA 59.737 34.615 10.31 0.00 37.97 3.91
2538 8086 6.804677 TCTGCTAATCTTGTCAAAAAGCAAA 58.195 32.000 10.31 0.00 37.97 3.68
2539 8087 6.919662 TCTGCTAATCTTGTCAAAAAGCAAAG 59.080 34.615 10.31 3.42 37.97 2.77
2540 8088 5.463061 TGCTAATCTTGTCAAAAAGCAAAGC 59.537 36.000 7.83 0.00 35.70 3.51
2541 8089 5.463061 GCTAATCTTGTCAAAAAGCAAAGCA 59.537 36.000 0.00 0.00 31.01 3.91
2542 8090 6.018832 GCTAATCTTGTCAAAAAGCAAAGCAA 60.019 34.615 0.00 0.00 31.01 3.91
2543 8091 6.930667 AATCTTGTCAAAAAGCAAAGCAAT 57.069 29.167 0.00 0.00 0.00 3.56
2544 8092 6.930667 ATCTTGTCAAAAAGCAAAGCAATT 57.069 29.167 0.00 0.00 0.00 2.32
2545 8093 6.348621 TCTTGTCAAAAAGCAAAGCAATTC 57.651 33.333 0.00 0.00 0.00 2.17
2546 8094 5.294060 TCTTGTCAAAAAGCAAAGCAATTCC 59.706 36.000 0.00 0.00 0.00 3.01
2547 8095 4.768583 TGTCAAAAAGCAAAGCAATTCCT 58.231 34.783 0.00 0.00 0.00 3.36
2599 8147 9.368674 CTATGCATTGGAAAATGTTCACAAATA 57.631 29.630 3.54 0.00 35.25 1.40
2626 8191 9.593134 GAGTGAGATCATTAACTGTCAAGTTAT 57.407 33.333 0.00 0.00 45.93 1.89
2837 8402 1.913778 TGCATGTTCTTCTGGTGCAT 58.086 45.000 0.00 0.00 40.51 3.96
2858 8423 1.134250 TGTACTGCAGCCTGACACAAA 60.134 47.619 15.27 0.00 0.00 2.83
2860 8425 0.394216 ACTGCAGCCTGACACAAACA 60.394 50.000 15.27 0.00 0.00 2.83
2973 8538 4.156455 TCTAAGATGCTTCCCCAATGTC 57.844 45.455 0.00 0.00 0.00 3.06
2974 8539 2.905415 AAGATGCTTCCCCAATGTCA 57.095 45.000 0.00 0.00 0.00 3.58
2997 8562 1.078848 GCTGCACATCGAGGTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
3011 8576 3.624777 AGGTCCTTGCGAATTCATCATT 58.375 40.909 6.22 0.00 0.00 2.57
3117 8683 1.270465 CGCATGATCCATCAGTAGCCA 60.270 52.381 0.00 0.00 40.64 4.75
3141 8707 1.131638 TGAACCCACTGAAGAGCACT 58.868 50.000 0.00 0.00 0.00 4.40
3191 8757 3.997021 CAGTCGAAAGCTTGAGGTTACAT 59.003 43.478 0.00 0.00 35.00 2.29
3294 8860 1.525765 TTGCGAGCTTTGCTGGTCA 60.526 52.632 12.38 0.00 39.88 4.02
3305 8871 1.375908 GCTGGTCATGTCGCCTGAA 60.376 57.895 12.06 0.00 0.00 3.02
3311 8877 2.749621 GGTCATGTCGCCTGAAGAAAAT 59.250 45.455 0.00 0.00 0.00 1.82
3312 8878 3.191371 GGTCATGTCGCCTGAAGAAAATT 59.809 43.478 0.00 0.00 0.00 1.82
3319 8885 4.148871 GTCGCCTGAAGAAAATTTTGCTTC 59.851 41.667 19.17 19.17 38.73 3.86
3333 8899 2.844451 GCTTCGGCACTGGCAAACA 61.844 57.895 3.16 0.00 43.71 2.83
3386 8952 0.734889 CACGGTTTCAGCCATGGATC 59.265 55.000 18.40 0.00 0.00 3.36
3399 8965 0.605589 ATGGATCGCTCGAGGATTCC 59.394 55.000 15.58 16.14 0.00 3.01
3427 8993 2.098607 CACCTCGAGTACGGAATGCTTA 59.901 50.000 12.31 0.00 40.21 3.09
3467 9033 3.056107 CCTTTCTTAGTGTCGATGACCCA 60.056 47.826 0.00 0.00 0.00 4.51
3513 9079 4.385199 GGGTATGTGTCTTCATGATCCCAA 60.385 45.833 0.00 0.00 36.10 4.12
3518 9084 4.520111 TGTGTCTTCATGATCCCAACTTTG 59.480 41.667 0.00 0.00 0.00 2.77
3556 9122 5.188555 ACTGCAATCTACTTCAAGATCAGGA 59.811 40.000 0.00 0.00 35.10 3.86
3588 9154 8.603304 AGTTTATAAGGTGTGTGTTCTCCTAAT 58.397 33.333 0.00 0.00 32.06 1.73
3595 9161 6.615726 AGGTGTGTGTTCTCCTAATATATGGT 59.384 38.462 0.00 0.00 30.78 3.55
3660 9226 3.662759 TTATCAGGGGCCGAGATTTTT 57.337 42.857 13.55 0.00 0.00 1.94
3772 9339 4.402793 TCCTAGAAGCCTTGTGTAGATCAC 59.597 45.833 0.00 0.00 46.31 3.06
3841 9414 4.095410 CAAGACTGCAGAGAGACTACAG 57.905 50.000 23.35 0.00 43.52 2.74
3842 9415 3.712016 AGACTGCAGAGAGACTACAGA 57.288 47.619 23.35 0.00 41.21 3.41
3843 9416 3.343617 AGACTGCAGAGAGACTACAGAC 58.656 50.000 23.35 0.00 41.21 3.51
3844 9417 3.078097 GACTGCAGAGAGACTACAGACA 58.922 50.000 23.35 0.00 41.21 3.41
3845 9418 2.817258 ACTGCAGAGAGACTACAGACAC 59.183 50.000 23.35 0.00 41.21 3.67
3846 9419 2.816672 CTGCAGAGAGACTACAGACACA 59.183 50.000 8.42 0.00 41.21 3.72
3870 9443 1.216710 GACGGAGAAGGAGCACAGG 59.783 63.158 0.00 0.00 0.00 4.00
3890 9463 3.573538 AGGCTGCTAGAGAGTGATATGTG 59.426 47.826 0.00 0.00 0.00 3.21
3934 9507 3.709141 AGAGAAGAAAGAGGCCATAGTCC 59.291 47.826 5.01 0.00 0.00 3.85
3952 9525 7.333672 CCATAGTCCTGTTACTGTAGGAAAAAC 59.666 40.741 0.00 0.00 44.25 2.43
3975 9548 0.807667 CTCGATGGTCGGCCTTCAAG 60.808 60.000 20.57 9.06 40.88 3.02
3977 9550 1.377202 GATGGTCGGCCTTCAAGCA 60.377 57.895 16.52 0.00 38.43 3.91
4009 9582 1.746220 CAACACCACCACCGAAAAGAA 59.254 47.619 0.00 0.00 0.00 2.52
4010 9583 2.358322 ACACCACCACCGAAAAGAAT 57.642 45.000 0.00 0.00 0.00 2.40
4032 9605 9.804758 AGAATAATAAAGAAGAGAACCAGTACG 57.195 33.333 0.00 0.00 0.00 3.67
4036 9609 0.458025 GAAGAGAACCAGTACGCCGG 60.458 60.000 0.00 0.00 0.00 6.13
4066 9639 5.470047 ACACGAAGATACTCAAGTTTCCT 57.530 39.130 0.00 0.00 0.00 3.36
4120 9693 1.388174 ACCACCCCCATATCCAACAA 58.612 50.000 0.00 0.00 0.00 2.83
4144 9718 4.283722 AGATAGTCAAGAGAACCACCGTTT 59.716 41.667 0.00 0.00 30.30 3.60
4180 9754 3.763897 GGATGGTACTTTTTCACTGCCAT 59.236 43.478 0.00 0.00 37.88 4.40
4186 9760 5.126061 GGTACTTTTTCACTGCCATCATCAT 59.874 40.000 0.00 0.00 0.00 2.45
4191 9765 3.918294 TCACTGCCATCATCATGAGAA 57.082 42.857 0.09 0.00 30.57 2.87
4242 9816 7.204496 ACCTAAGACACATAGATACTAAGCG 57.796 40.000 0.00 0.00 0.00 4.68
4260 9834 1.336795 GCGCACACAAAATAAGGCCTT 60.337 47.619 24.18 24.18 0.00 4.35
4261 9835 2.327568 CGCACACAAAATAAGGCCTTG 58.672 47.619 28.77 14.28 0.00 3.61
4272 9846 1.450360 AAGGCCTTGAGACTCCCTTT 58.550 50.000 19.73 0.00 32.20 3.11
4287 9861 1.912043 CCCTTTCCTCTCACCATCACT 59.088 52.381 0.00 0.00 0.00 3.41
4296 9870 4.177026 CTCTCACCATCACTTAGAAACCG 58.823 47.826 0.00 0.00 0.00 4.44
4308 9882 5.921408 CACTTAGAAACCGATATAGGTGAGC 59.079 44.000 8.42 1.60 45.21 4.26
4323 9897 0.648441 TGAGCGAAACAACGTGACAC 59.352 50.000 0.00 0.00 35.59 3.67
4324 9898 0.042448 GAGCGAAACAACGTGACACC 60.042 55.000 0.00 0.00 35.59 4.16
4325 9899 0.741574 AGCGAAACAACGTGACACCA 60.742 50.000 0.00 0.00 35.59 4.17
4328 9902 1.257936 CGAAACAACGTGACACCAGAG 59.742 52.381 0.00 0.00 0.00 3.35
4341 9915 1.122019 ACCAGAGTCCGAGGCACTTT 61.122 55.000 0.00 0.00 41.55 2.66
4346 9920 2.093106 GAGTCCGAGGCACTTTCTCTA 58.907 52.381 0.00 0.00 41.55 2.43
4348 9922 3.100671 AGTCCGAGGCACTTTCTCTATT 58.899 45.455 0.00 0.00 41.55 1.73
4352 9926 3.383185 CCGAGGCACTTTCTCTATTCTCT 59.617 47.826 0.00 0.00 41.55 3.10
4356 9930 6.220726 AGGCACTTTCTCTATTCTCTTCTC 57.779 41.667 0.00 0.00 27.25 2.87
4358 9932 6.212388 AGGCACTTTCTCTATTCTCTTCTCAA 59.788 38.462 0.00 0.00 27.25 3.02
4361 9935 7.275560 GCACTTTCTCTATTCTCTTCTCAAGTC 59.724 40.741 0.00 0.00 0.00 3.01
4388 9962 0.676782 GCGGCTACAGTTTCATGGGT 60.677 55.000 0.00 0.00 0.00 4.51
4407 9981 5.745227 TGGGTTGTTTCTTCTCATATCTCC 58.255 41.667 0.00 0.00 0.00 3.71
4411 9985 6.484977 GGTTGTTTCTTCTCATATCTCCATCC 59.515 42.308 0.00 0.00 0.00 3.51
4412 9986 7.278875 GTTGTTTCTTCTCATATCTCCATCCT 58.721 38.462 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.437748 ACTAGTGGCTCAATAGTGATTGTATC 58.562 38.462 12.48 0.00 42.41 2.24
88 89 7.119699 TGTTCTCTTTCCGTATACTCTTCGTAA 59.880 37.037 0.56 0.00 0.00 3.18
96 97 6.095160 CACTACCTGTTCTCTTTCCGTATACT 59.905 42.308 0.56 0.00 0.00 2.12
102 103 3.662247 ACACTACCTGTTCTCTTTCCG 57.338 47.619 0.00 0.00 0.00 4.30
139 140 9.314501 GTTGATTGAAACTTACGAACACTAATC 57.685 33.333 0.00 0.00 0.00 1.75
166 167 7.404671 TTTTGGTAGAAGAAGAAGCAAAACT 57.595 32.000 7.36 0.00 42.41 2.66
199 200 9.719355 TTTCTTCACTAGAGTATGCAAATTACA 57.281 29.630 0.00 0.00 33.51 2.41
216 217 5.884792 CCCTAGCAGATTGATTTTCTTCACT 59.115 40.000 0.00 0.00 0.00 3.41
218 219 5.819991 ACCCTAGCAGATTGATTTTCTTCA 58.180 37.500 0.00 0.00 0.00 3.02
222 224 7.163001 AGAAAACCCTAGCAGATTGATTTTC 57.837 36.000 0.00 0.00 35.85 2.29
235 237 4.720649 TCAGTCATCGAGAAAACCCTAG 57.279 45.455 0.00 0.00 0.00 3.02
340 357 2.093711 TGCACACCGCTCAATAGTACAT 60.094 45.455 0.00 0.00 43.06 2.29
356 373 4.336889 AAGCTTTGTAGTCTAGTGCACA 57.663 40.909 21.04 4.13 0.00 4.57
416 433 4.018050 AGTGGAGTTGCTAGATGGGAAAAT 60.018 41.667 0.00 0.00 0.00 1.82
507 527 1.144716 GCTGATGCGATCCTCACCA 59.855 57.895 0.00 0.00 0.00 4.17
717 737 3.175710 ACGGTGTGAAAGGGCCCT 61.176 61.111 22.28 22.28 0.00 5.19
726 746 0.888619 CTAAGAGGCTGACGGTGTGA 59.111 55.000 0.00 0.00 0.00 3.58
865 1360 1.760875 GTATGTCGGCAGGGAGGGA 60.761 63.158 0.00 0.00 0.00 4.20
911 1407 1.692762 GGATCTTCCAGTAGGCCAGGA 60.693 57.143 5.01 3.47 36.28 3.86
1013 1512 3.869272 CGAGCAAGCGGTGGATGC 61.869 66.667 1.57 1.57 40.34 3.91
1193 1710 2.119029 GTTCCACCATAAGGCGGCC 61.119 63.158 12.11 12.11 37.02 6.13
1273 1793 3.216800 TCTGCAGCTTGTGAATTCTTGT 58.783 40.909 9.47 0.00 0.00 3.16
1314 1834 1.968493 AGAAGGAAAGGCAGTCGTACA 59.032 47.619 0.00 0.00 0.00 2.90
1320 1840 0.988063 GGGAGAGAAGGAAAGGCAGT 59.012 55.000 0.00 0.00 0.00 4.40
1435 1961 6.702329 TCCCTGTGATCTTAGAGAGTTTTTC 58.298 40.000 0.00 0.00 0.00 2.29
1437 1963 5.188751 CCTCCCTGTGATCTTAGAGAGTTTT 59.811 44.000 0.00 0.00 0.00 2.43
1506 2033 2.424302 CTCCCGTGGGTTTGACGT 59.576 61.111 4.53 0.00 34.97 4.34
1527 2054 4.341863 TGCTTCCCCCTAGTTTCTAGTA 57.658 45.455 3.62 0.00 0.00 1.82
1631 2166 1.004440 GCTTCTTCACGGACCTGCT 60.004 57.895 0.00 0.00 0.00 4.24
1639 2174 1.925847 GATCTGCTGAGCTTCTTCACG 59.074 52.381 5.83 0.00 0.00 4.35
1658 2193 1.200519 CCCCGTGATGTTCTTAGGGA 58.799 55.000 0.00 0.00 41.26 4.20
1774 2309 6.397272 TGAAAGTTTGCAGAAAATCAAGTGT 58.603 32.000 0.00 0.00 0.00 3.55
1793 2328 3.772060 GCTATGGAGCCAAACTGAAAG 57.228 47.619 0.00 0.00 43.49 2.62
1821 4983 0.034670 CTCTGGGGAAGGCTGAAAGG 60.035 60.000 0.00 0.00 0.00 3.11
1880 5046 3.551846 AGTCTGGACAAAACCGTTTCAT 58.448 40.909 0.00 0.00 0.00 2.57
1966 5132 7.492994 GGCTGTGGAACTTTAGAAACTCTATAG 59.507 40.741 0.00 0.00 38.04 1.31
1990 5156 2.648059 ACATCTGCAATCTTGTAGGGC 58.352 47.619 7.96 0.00 40.67 5.19
2041 5213 1.676006 GTTGCTAAGTTGTGGCTGTGT 59.324 47.619 0.00 0.00 0.00 3.72
2044 5216 2.221169 TCTGTTGCTAAGTTGTGGCTG 58.779 47.619 0.00 0.00 0.00 4.85
2076 5248 0.968405 GCTTTTCCAGGTGCCAATCA 59.032 50.000 0.00 0.00 0.00 2.57
2088 5260 4.931601 GGGAAGATGTTGAAATGCTTTTCC 59.068 41.667 19.16 8.08 40.49 3.13
2148 5320 8.695284 GTGCAAAGAGATAGAAACTGTATATCG 58.305 37.037 0.00 0.00 32.36 2.92
2174 5346 3.771577 AAACCCCTAGAGTGTGTTCAG 57.228 47.619 0.00 0.00 0.00 3.02
2252 5424 5.430745 CCCTAGGGTATAAGGTTTCCTTTGA 59.569 44.000 20.88 0.00 41.69 2.69
2295 5468 7.773690 GGCTGAAACCTTTGTATCTTCCTATAA 59.226 37.037 0.00 0.00 0.00 0.98
2298 6557 5.497474 GGCTGAAACCTTTGTATCTTCCTA 58.503 41.667 0.00 0.00 0.00 2.94
2316 6575 0.774491 AACTTTAGGGTGGGGGCTGA 60.774 55.000 0.00 0.00 0.00 4.26
2317 6576 0.323451 GAACTTTAGGGTGGGGGCTG 60.323 60.000 0.00 0.00 0.00 4.85
2318 6577 0.774491 TGAACTTTAGGGTGGGGGCT 60.774 55.000 0.00 0.00 0.00 5.19
2466 8014 8.627208 TTTTGACAAGATTAGCAGAGAAGATT 57.373 30.769 0.00 0.00 0.00 2.40
2492 8040 6.095160 CAGAGAAGATTAGGAATTGCTTTGCT 59.905 38.462 4.26 0.00 39.60 3.91
2499 8047 9.558396 AAGATTAGCAGAGAAGATTAGGAATTG 57.442 33.333 0.00 0.00 0.00 2.32
2508 8056 8.627208 TTTTTGACAAGATTAGCAGAGAAGAT 57.373 30.769 0.00 0.00 0.00 2.40
2509 8057 7.308229 GCTTTTTGACAAGATTAGCAGAGAAGA 60.308 37.037 0.00 0.00 0.00 2.87
2510 8058 6.800892 GCTTTTTGACAAGATTAGCAGAGAAG 59.199 38.462 0.00 0.00 0.00 2.85
2511 8059 6.262944 TGCTTTTTGACAAGATTAGCAGAGAA 59.737 34.615 9.91 0.00 33.64 2.87
2512 8060 5.764686 TGCTTTTTGACAAGATTAGCAGAGA 59.235 36.000 9.91 0.00 33.64 3.10
2513 8061 6.005583 TGCTTTTTGACAAGATTAGCAGAG 57.994 37.500 9.91 0.00 33.64 3.35
2514 8062 6.389830 TTGCTTTTTGACAAGATTAGCAGA 57.610 33.333 12.30 5.48 38.27 4.26
2515 8063 6.346359 GCTTTGCTTTTTGACAAGATTAGCAG 60.346 38.462 12.30 6.69 38.27 4.24
2516 8064 5.463061 GCTTTGCTTTTTGACAAGATTAGCA 59.537 36.000 9.91 9.91 35.56 3.49
2517 8065 5.463061 TGCTTTGCTTTTTGACAAGATTAGC 59.537 36.000 0.00 0.00 0.00 3.09
2518 8066 7.467557 TTGCTTTGCTTTTTGACAAGATTAG 57.532 32.000 0.00 0.00 0.00 1.73
2519 8067 8.436046 AATTGCTTTGCTTTTTGACAAGATTA 57.564 26.923 0.00 0.00 0.00 1.75
2520 8068 6.930667 ATTGCTTTGCTTTTTGACAAGATT 57.069 29.167 0.00 0.00 0.00 2.40
2521 8069 6.017687 GGAATTGCTTTGCTTTTTGACAAGAT 60.018 34.615 0.00 0.00 0.00 2.40
2522 8070 5.294060 GGAATTGCTTTGCTTTTTGACAAGA 59.706 36.000 0.00 0.00 0.00 3.02
2523 8071 5.295045 AGGAATTGCTTTGCTTTTTGACAAG 59.705 36.000 0.00 0.00 30.85 3.16
2524 8072 5.184711 AGGAATTGCTTTGCTTTTTGACAA 58.815 33.333 0.00 0.00 30.85 3.18
2525 8073 4.768583 AGGAATTGCTTTGCTTTTTGACA 58.231 34.783 0.00 0.00 30.85 3.58
2526 8074 6.843069 TTAGGAATTGCTTTGCTTTTTGAC 57.157 33.333 4.26 0.00 37.22 3.18
2527 8075 8.987890 GTATTTAGGAATTGCTTTGCTTTTTGA 58.012 29.630 4.26 0.00 37.22 2.69
2528 8076 8.992073 AGTATTTAGGAATTGCTTTGCTTTTTG 58.008 29.630 4.26 0.00 37.22 2.44
2529 8077 9.559732 AAGTATTTAGGAATTGCTTTGCTTTTT 57.440 25.926 4.26 0.00 37.22 1.94
2591 8139 9.591792 CAGTTAATGATCTCACTCTATTTGTGA 57.408 33.333 0.00 0.00 41.48 3.58
2599 8147 7.238486 ACTTGACAGTTAATGATCTCACTCT 57.762 36.000 0.00 0.00 0.00 3.24
2837 8402 0.467804 TGTGTCAGGCTGCAGTACAA 59.532 50.000 16.64 0.00 0.00 2.41
2860 8425 4.415150 CATGGTGCCTGGGCTCGT 62.415 66.667 13.05 4.16 42.51 4.18
2875 8440 5.072329 CCAATATCTCAACACTAGGGACCAT 59.928 44.000 0.00 0.00 0.00 3.55
2973 8538 3.079941 CTCGATGTGCAGCGTGCTG 62.080 63.158 17.29 17.29 45.31 4.41
2974 8539 2.812609 CTCGATGTGCAGCGTGCT 60.813 61.111 9.62 0.00 45.31 4.40
3117 8683 2.289945 GCTCTTCAGTGGGTTCATGAGT 60.290 50.000 0.00 0.00 0.00 3.41
3141 8707 2.042464 CTCCTGCCAGAACCTAGCATA 58.958 52.381 0.00 0.00 35.64 3.14
3191 8757 1.699083 TGGATGAACAAGCTCCTGACA 59.301 47.619 0.00 0.00 0.00 3.58
3294 8860 3.989817 GCAAAATTTTCTTCAGGCGACAT 59.010 39.130 0.00 0.00 0.00 3.06
3319 8885 2.336088 CCTTGTTTGCCAGTGCCG 59.664 61.111 0.00 0.00 36.33 5.69
3330 8896 3.159213 TGCCATCTCATTCACCTTGTT 57.841 42.857 0.00 0.00 0.00 2.83
3333 8899 3.499338 TGTTTGCCATCTCATTCACCTT 58.501 40.909 0.00 0.00 0.00 3.50
3386 8952 1.361993 CTCCAGGAATCCTCGAGCG 59.638 63.158 10.89 0.19 32.63 5.03
3399 8965 1.810532 GTACTCGAGGTGCCTCCAG 59.189 63.158 18.41 11.38 39.77 3.86
3427 8993 7.922699 AGAAAGGGTACTTTAGCATAGATCT 57.077 36.000 0.00 0.00 46.51 2.75
3513 9079 4.262164 GCAGTCAATGATTCCCAACAAAGT 60.262 41.667 0.00 0.00 0.00 2.66
3518 9084 3.940209 TTGCAGTCAATGATTCCCAAC 57.060 42.857 0.00 0.00 0.00 3.77
3556 9122 9.569122 AGAACACACACCTTATAAACTAAACAT 57.431 29.630 0.00 0.00 0.00 2.71
3630 9196 2.959030 GGCCCCTGATAAATCAAAGGAC 59.041 50.000 10.63 5.41 36.18 3.85
3636 9202 1.801242 TCTCGGCCCCTGATAAATCA 58.199 50.000 0.00 0.00 35.16 2.57
3660 9226 9.595823 GTTTTGCTAGGATGTCTTGTATAGTTA 57.404 33.333 0.00 0.00 0.00 2.24
3772 9339 7.558161 TGAGATGGTTTAGCTATGTGATTTG 57.442 36.000 0.00 0.00 0.00 2.32
3840 9413 3.393800 CTTCTCCGTCACAATTGTGTCT 58.606 45.455 31.99 0.00 45.76 3.41
3841 9414 2.480419 CCTTCTCCGTCACAATTGTGTC 59.520 50.000 31.99 26.57 45.76 3.67
3842 9415 2.104111 TCCTTCTCCGTCACAATTGTGT 59.896 45.455 31.99 0.84 45.76 3.72
3843 9416 2.738846 CTCCTTCTCCGTCACAATTGTG 59.261 50.000 29.01 29.01 46.91 3.33
3844 9417 2.872038 GCTCCTTCTCCGTCACAATTGT 60.872 50.000 4.92 4.92 0.00 2.71
3845 9418 1.734465 GCTCCTTCTCCGTCACAATTG 59.266 52.381 3.24 3.24 0.00 2.32
3846 9419 1.347707 TGCTCCTTCTCCGTCACAATT 59.652 47.619 0.00 0.00 0.00 2.32
3870 9443 4.844998 TCACATATCACTCTCTAGCAGC 57.155 45.455 0.00 0.00 0.00 5.25
3890 9463 4.407365 TCCTTGGGTTCCTTTCTGATTTC 58.593 43.478 0.00 0.00 0.00 2.17
3934 9507 3.187842 GGCCGTTTTTCCTACAGTAACAG 59.812 47.826 0.00 0.00 0.00 3.16
4009 9582 6.985059 GGCGTACTGGTTCTCTTCTTTATTAT 59.015 38.462 0.00 0.00 0.00 1.28
4010 9583 6.335777 GGCGTACTGGTTCTCTTCTTTATTA 58.664 40.000 0.00 0.00 0.00 0.98
4032 9605 0.729140 CTTCGTGTTGATTTGCCGGC 60.729 55.000 22.73 22.73 0.00 6.13
4036 9609 5.530519 TGAGTATCTTCGTGTTGATTTGC 57.469 39.130 0.00 0.00 34.92 3.68
4066 9639 2.555670 CGGGTCCTTTTGATTTGGGGTA 60.556 50.000 0.00 0.00 0.00 3.69
4120 9693 3.833070 ACGGTGGTTCTCTTGACTATCTT 59.167 43.478 0.00 0.00 0.00 2.40
4144 9718 3.190383 ACCATCCATATCTCCCATCGA 57.810 47.619 0.00 0.00 0.00 3.59
4180 9754 6.704937 GTGCATGACTTCTATTCTCATGATGA 59.295 38.462 10.36 0.00 42.65 2.92
4186 9760 4.937620 GGTTGTGCATGACTTCTATTCTCA 59.062 41.667 0.00 0.00 0.00 3.27
4191 9765 5.182001 GTCTTTGGTTGTGCATGACTTCTAT 59.818 40.000 0.00 0.00 0.00 1.98
4242 9816 3.255642 TCTCAAGGCCTTATTTTGTGTGC 59.744 43.478 20.00 0.00 0.00 4.57
4260 9834 2.530701 GTGAGAGGAAAGGGAGTCTCA 58.469 52.381 1.47 0.00 42.45 3.27
4261 9835 1.828595 GGTGAGAGGAAAGGGAGTCTC 59.171 57.143 0.00 0.00 36.72 3.36
4272 9846 4.223032 GGTTTCTAAGTGATGGTGAGAGGA 59.777 45.833 0.00 0.00 0.00 3.71
4287 9861 4.823442 TCGCTCACCTATATCGGTTTCTAA 59.177 41.667 0.00 0.00 34.29 2.10
4296 9870 4.026804 CACGTTGTTTCGCTCACCTATATC 60.027 45.833 0.00 0.00 0.00 1.63
4308 9882 1.257936 CTCTGGTGTCACGTTGTTTCG 59.742 52.381 0.00 0.00 0.00 3.46
4323 9897 0.390472 GAAAGTGCCTCGGACTCTGG 60.390 60.000 0.00 0.00 0.00 3.86
4324 9898 0.605589 AGAAAGTGCCTCGGACTCTG 59.394 55.000 0.00 0.00 0.00 3.35
4325 9899 0.892063 GAGAAAGTGCCTCGGACTCT 59.108 55.000 0.00 0.00 0.00 3.24
4328 9902 3.131400 AGAATAGAGAAAGTGCCTCGGAC 59.869 47.826 0.00 0.00 35.88 4.79
4341 9915 5.189928 AGCGACTTGAGAAGAGAATAGAGA 58.810 41.667 0.00 0.00 0.00 3.10
4346 9920 4.674101 CGAGAAGCGACTTGAGAAGAGAAT 60.674 45.833 0.00 0.00 44.57 2.40
4348 9922 2.160615 CGAGAAGCGACTTGAGAAGAGA 59.839 50.000 0.00 0.00 44.57 3.10
4352 9926 3.108521 GCGAGAAGCGACTTGAGAA 57.891 52.632 4.94 0.00 44.57 2.87
4388 9962 7.443302 AGGATGGAGATATGAGAAGAAACAA 57.557 36.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.