Multiple sequence alignment - TraesCS7A01G378400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G378400 chr7A 100.000 6773 0 0 1 6773 553754724 553747952 0.000000e+00 12508
1 TraesCS7A01G378400 chr7A 82.540 126 17 4 465 585 606943675 606943800 9.290000e-19 106
2 TraesCS7A01G378400 chr7D 95.781 5712 160 31 1098 6773 485522485 485516819 0.000000e+00 9138
3 TraesCS7A01G378400 chr7D 89.881 504 27 10 539 1028 485523301 485522808 1.600000e-175 627
4 TraesCS7A01G378400 chr7D 87.624 202 23 2 245 445 485523502 485523302 4.080000e-57 233
5 TraesCS7A01G378400 chr7B 92.871 5723 283 61 1099 6773 513247168 513241523 0.000000e+00 8192
6 TraesCS7A01G378400 chr7B 86.207 464 22 14 615 1063 513247609 513247173 1.330000e-126 464
7 TraesCS7A01G378400 chr7B 83.761 234 22 12 360 584 743724590 743724816 2.480000e-49 207
8 TraesCS7A01G378400 chr2D 81.781 247 34 6 349 585 646042638 646042883 5.360000e-46 196
9 TraesCS7A01G378400 chr2D 84.112 107 13 3 480 584 590244945 590244841 4.320000e-17 100
10 TraesCS7A01G378400 chr5A 84.000 175 20 6 349 521 364977461 364977629 1.950000e-35 161
11 TraesCS7A01G378400 chr4D 91.892 111 8 1 353 462 226455340 226455230 3.270000e-33 154
12 TraesCS7A01G378400 chr4D 96.296 81 3 0 1 81 19927436 19927356 4.260000e-27 134
13 TraesCS7A01G378400 chr4D 96.296 81 3 0 1 81 508591384 508591304 4.260000e-27 134
14 TraesCS7A01G378400 chr2A 90.517 116 10 1 348 462 740092875 740092760 1.180000e-32 152
15 TraesCS7A01G378400 chr2A 86.364 132 16 2 332 462 459017322 459017192 7.080000e-30 143
16 TraesCS7A01G378400 chr3B 88.710 124 11 3 349 470 820354771 820354893 1.520000e-31 148
17 TraesCS7A01G378400 chr1B 85.211 142 15 6 333 470 74848352 74848491 2.550000e-29 141
18 TraesCS7A01G378400 chr1B 82.677 127 14 5 465 584 558086780 558086655 9.290000e-19 106
19 TraesCS7A01G378400 chr5B 97.531 81 2 0 1 81 530912400 530912480 9.160000e-29 139
20 TraesCS7A01G378400 chr5B 82.812 128 9 8 465 582 528224005 528224129 1.200000e-17 102
21 TraesCS7A01G378400 chr6D 96.296 81 3 0 1 81 45518435 45518355 4.260000e-27 134
22 TraesCS7A01G378400 chr6D 96.296 81 3 0 1 81 168250404 168250324 4.260000e-27 134
23 TraesCS7A01G378400 chr6D 96.296 81 3 0 1 81 168252900 168252980 4.260000e-27 134
24 TraesCS7A01G378400 chr6D 96.296 81 3 0 1 81 168253790 168253710 4.260000e-27 134
25 TraesCS7A01G378400 chr6D 96.296 81 3 0 1 81 429818620 429818540 4.260000e-27 134
26 TraesCS7A01G378400 chr6D 83.607 122 15 3 465 584 86735882 86735764 7.180000e-20 110
27 TraesCS7A01G378400 chr1D 96.296 81 3 0 1 81 419382707 419382787 4.260000e-27 134
28 TraesCS7A01G378400 chr3D 83.740 123 17 2 465 584 156953770 156953648 5.550000e-21 113
29 TraesCS7A01G378400 chr5D 83.465 127 13 5 465 585 519276183 519276307 2.000000e-20 111
30 TraesCS7A01G378400 chr6B 84.821 112 11 5 477 584 659808448 659808339 2.580000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G378400 chr7A 553747952 553754724 6772 True 12508.000000 12508 100.000000 1 6773 1 chr7A.!!$R1 6772
1 TraesCS7A01G378400 chr7D 485516819 485523502 6683 True 3332.666667 9138 91.095333 245 6773 3 chr7D.!!$R1 6528
2 TraesCS7A01G378400 chr7B 513241523 513247609 6086 True 4328.000000 8192 89.539000 615 6773 2 chr7B.!!$R1 6158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.030603 GTGGAGAAGGGGGAGGAGAT 60.031 60.0 0.00 0.00 0.00 2.75 F
133 134 0.030603 AGAAGGGGGAGGAGATGGTC 60.031 60.0 0.00 0.00 0.00 4.02 F
493 495 0.032130 TCTCAAGACGATATGCCGCC 59.968 55.0 0.00 0.00 0.00 6.13 F
495 497 0.032130 TCAAGACGATATGCCGCCTC 59.968 55.0 0.00 0.00 0.00 4.70 F
497 499 0.032678 AAGACGATATGCCGCCTCAG 59.967 55.0 0.00 0.00 0.00 3.35 F
1089 1119 0.034960 GCCCTTCACCCCTTCTCTTC 60.035 60.0 0.00 0.00 0.00 2.87 F
1170 1453 0.035739 TGCTGACTGCTGAATGCTGA 59.964 50.0 5.87 0.00 42.27 4.26 F
1171 1454 0.447011 GCTGACTGCTGAATGCTGAC 59.553 55.0 0.00 0.00 42.27 3.51 F
1603 1888 0.746063 TGGCCACTTCTGTTTGCAAG 59.254 50.0 0.00 0.00 0.00 4.01 F
3404 3700 1.100510 CAGAATGTGCACCAGGGATG 58.899 55.0 15.69 1.94 0.00 3.51 F
3978 4275 0.038892 CTTCCAATGCTGTGCACCAC 60.039 55.0 15.69 6.83 43.04 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1084 1114 0.032416 TAAGGACCGGGGGAGAAGAG 60.032 60.000 6.32 0.00 0.00 2.85 R
1087 1117 0.043637 ATGTAAGGACCGGGGGAGAA 59.956 55.000 6.32 0.00 0.00 2.87 R
1424 1707 0.607489 ATTATGATGCAGAGGCCGGC 60.607 55.000 21.18 21.18 40.13 6.13 R
1949 2234 1.700042 GGAGACTCGATGCCCCCAAT 61.700 60.000 0.00 0.00 0.00 3.16 R
2124 2409 6.016777 GCAATTTTCTGGGATAGGATGTGTAG 60.017 42.308 0.00 0.00 0.00 2.74 R
3049 3339 4.397420 TGTTTGCATCCTCAACACTATGT 58.603 39.130 0.00 0.00 0.00 2.29 R
3101 3391 3.733443 TTGCTCTTTTTGGCCTCTTTC 57.267 42.857 3.32 0.00 0.00 2.62 R
3132 3422 4.522789 GCAGGTGGTATTTTCTTTGAAGGA 59.477 41.667 0.00 0.00 0.00 3.36 R
3409 3705 1.200252 GAAGCGCACTAGTGTCTCTGA 59.800 52.381 23.44 0.00 0.00 3.27 R
4387 4695 1.205893 TGTCCAACACCAAAGGCAAAC 59.794 47.619 0.00 0.00 0.00 2.93 R
5794 6115 0.879839 CACACATCTGTCGTGCCACA 60.880 55.000 0.00 0.00 37.93 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.796475 TCCTTTTATAGCTCATCATTTATTGGC 58.204 33.333 0.00 0.00 0.00 4.52
29 30 8.579006 CCTTTTATAGCTCATCATTTATTGGCA 58.421 33.333 0.00 0.00 0.00 4.92
30 31 9.970395 CTTTTATAGCTCATCATTTATTGGCAA 57.030 29.630 0.68 0.68 0.00 4.52
32 33 9.970395 TTTATAGCTCATCATTTATTGGCAAAG 57.030 29.630 3.01 0.00 0.00 2.77
33 34 7.828508 ATAGCTCATCATTTATTGGCAAAGA 57.171 32.000 3.01 0.00 0.00 2.52
34 35 6.726490 AGCTCATCATTTATTGGCAAAGAT 57.274 33.333 3.01 0.51 0.00 2.40
35 36 7.828508 AGCTCATCATTTATTGGCAAAGATA 57.171 32.000 3.01 0.00 0.00 1.98
36 37 7.883217 AGCTCATCATTTATTGGCAAAGATAG 58.117 34.615 3.01 0.00 0.00 2.08
37 38 7.722728 AGCTCATCATTTATTGGCAAAGATAGA 59.277 33.333 3.01 0.52 0.00 1.98
38 39 8.355169 GCTCATCATTTATTGGCAAAGATAGAA 58.645 33.333 3.01 0.00 0.00 2.10
50 51 9.859427 TTGGCAAAGATAGAAAAAGTCAATATG 57.141 29.630 0.00 0.00 0.00 1.78
51 52 9.241919 TGGCAAAGATAGAAAAAGTCAATATGA 57.758 29.630 0.00 0.00 0.00 2.15
61 62 9.799106 AGAAAAAGTCAATATGAAGAAGGAGAA 57.201 29.630 0.00 0.00 0.00 2.87
64 65 9.799106 AAAAGTCAATATGAAGAAGGAGAAAGA 57.201 29.630 0.00 0.00 0.00 2.52
65 66 9.799106 AAAGTCAATATGAAGAAGGAGAAAGAA 57.201 29.630 0.00 0.00 0.00 2.52
66 67 9.799106 AAGTCAATATGAAGAAGGAGAAAGAAA 57.201 29.630 0.00 0.00 0.00 2.52
67 68 9.225436 AGTCAATATGAAGAAGGAGAAAGAAAC 57.775 33.333 0.00 0.00 0.00 2.78
68 69 9.003658 GTCAATATGAAGAAGGAGAAAGAAACA 57.996 33.333 0.00 0.00 0.00 2.83
69 70 9.573166 TCAATATGAAGAAGGAGAAAGAAACAA 57.427 29.630 0.00 0.00 0.00 2.83
77 78 8.535690 AGAAGGAGAAAGAAACAATAGTAACG 57.464 34.615 0.00 0.00 0.00 3.18
78 79 8.148999 AGAAGGAGAAAGAAACAATAGTAACGT 58.851 33.333 0.00 0.00 0.00 3.99
79 80 7.653767 AGGAGAAAGAAACAATAGTAACGTG 57.346 36.000 0.00 0.00 0.00 4.49
80 81 6.649557 AGGAGAAAGAAACAATAGTAACGTGG 59.350 38.462 0.00 0.00 0.00 4.94
81 82 6.647895 GGAGAAAGAAACAATAGTAACGTGGA 59.352 38.462 0.00 0.00 0.00 4.02
82 83 7.172019 GGAGAAAGAAACAATAGTAACGTGGAA 59.828 37.037 0.00 0.00 0.00 3.53
83 84 8.084590 AGAAAGAAACAATAGTAACGTGGAAG 57.915 34.615 0.00 0.00 0.00 3.46
84 85 6.796705 AAGAAACAATAGTAACGTGGAAGG 57.203 37.500 0.00 0.00 0.00 3.46
85 86 5.243207 AGAAACAATAGTAACGTGGAAGGG 58.757 41.667 0.00 0.00 0.00 3.95
86 87 4.895668 AACAATAGTAACGTGGAAGGGA 57.104 40.909 0.00 0.00 0.00 4.20
87 88 4.895668 ACAATAGTAACGTGGAAGGGAA 57.104 40.909 0.00 0.00 0.00 3.97
88 89 5.231702 ACAATAGTAACGTGGAAGGGAAA 57.768 39.130 0.00 0.00 0.00 3.13
89 90 5.243207 ACAATAGTAACGTGGAAGGGAAAG 58.757 41.667 0.00 0.00 0.00 2.62
90 91 5.012354 ACAATAGTAACGTGGAAGGGAAAGA 59.988 40.000 0.00 0.00 0.00 2.52
91 92 3.397849 AGTAACGTGGAAGGGAAAGAC 57.602 47.619 0.00 0.00 0.00 3.01
92 93 2.064014 GTAACGTGGAAGGGAAAGACG 58.936 52.381 0.00 0.00 36.14 4.18
93 94 0.466963 AACGTGGAAGGGAAAGACGT 59.533 50.000 0.00 0.00 44.67 4.34
94 95 0.466963 ACGTGGAAGGGAAAGACGTT 59.533 50.000 0.00 0.00 40.16 3.99
95 96 1.145803 CGTGGAAGGGAAAGACGTTC 58.854 55.000 0.00 0.00 35.21 3.95
96 97 1.539496 CGTGGAAGGGAAAGACGTTCA 60.539 52.381 3.52 0.00 38.06 3.18
97 98 2.143925 GTGGAAGGGAAAGACGTTCAG 58.856 52.381 3.52 0.00 38.06 3.02
98 99 1.071699 TGGAAGGGAAAGACGTTCAGG 59.928 52.381 3.52 0.00 38.06 3.86
99 100 1.071857 GGAAGGGAAAGACGTTCAGGT 59.928 52.381 3.52 0.00 38.06 4.00
100 101 2.486727 GGAAGGGAAAGACGTTCAGGTT 60.487 50.000 3.52 0.00 38.06 3.50
101 102 3.211865 GAAGGGAAAGACGTTCAGGTTT 58.788 45.455 3.52 0.00 38.06 3.27
102 103 4.383173 GAAGGGAAAGACGTTCAGGTTTA 58.617 43.478 3.52 0.00 38.06 2.01
103 104 4.004196 AGGGAAAGACGTTCAGGTTTAG 57.996 45.455 3.52 0.00 38.06 1.85
104 105 3.072211 GGGAAAGACGTTCAGGTTTAGG 58.928 50.000 3.52 0.00 38.06 2.69
105 106 3.072211 GGAAAGACGTTCAGGTTTAGGG 58.928 50.000 3.52 0.00 38.06 3.53
106 107 2.853235 AAGACGTTCAGGTTTAGGGG 57.147 50.000 0.00 0.00 0.00 4.79
107 108 0.981943 AGACGTTCAGGTTTAGGGGG 59.018 55.000 0.00 0.00 0.00 5.40
108 109 0.689055 GACGTTCAGGTTTAGGGGGT 59.311 55.000 0.00 0.00 0.00 4.95
109 110 0.399075 ACGTTCAGGTTTAGGGGGTG 59.601 55.000 0.00 0.00 0.00 4.61
110 111 0.322187 CGTTCAGGTTTAGGGGGTGG 60.322 60.000 0.00 0.00 0.00 4.61
111 112 0.775542 GTTCAGGTTTAGGGGGTGGT 59.224 55.000 0.00 0.00 0.00 4.16
112 113 0.774908 TTCAGGTTTAGGGGGTGGTG 59.225 55.000 0.00 0.00 0.00 4.17
113 114 1.137594 TCAGGTTTAGGGGGTGGTGG 61.138 60.000 0.00 0.00 0.00 4.61
114 115 1.137594 CAGGTTTAGGGGGTGGTGGA 61.138 60.000 0.00 0.00 0.00 4.02
115 116 0.845102 AGGTTTAGGGGGTGGTGGAG 60.845 60.000 0.00 0.00 0.00 3.86
116 117 0.843343 GGTTTAGGGGGTGGTGGAGA 60.843 60.000 0.00 0.00 0.00 3.71
117 118 1.069775 GTTTAGGGGGTGGTGGAGAA 58.930 55.000 0.00 0.00 0.00 2.87
118 119 1.004394 GTTTAGGGGGTGGTGGAGAAG 59.996 57.143 0.00 0.00 0.00 2.85
119 120 0.549169 TTAGGGGGTGGTGGAGAAGG 60.549 60.000 0.00 0.00 0.00 3.46
120 121 2.486410 TAGGGGGTGGTGGAGAAGGG 62.486 65.000 0.00 0.00 0.00 3.95
121 122 3.339093 GGGGTGGTGGAGAAGGGG 61.339 72.222 0.00 0.00 0.00 4.79
122 123 3.339093 GGGTGGTGGAGAAGGGGG 61.339 72.222 0.00 0.00 0.00 5.40
123 124 2.204090 GGTGGTGGAGAAGGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
124 125 2.301738 GGTGGTGGAGAAGGGGGAG 61.302 68.421 0.00 0.00 0.00 4.30
125 126 2.124996 TGGTGGAGAAGGGGGAGG 59.875 66.667 0.00 0.00 0.00 4.30
126 127 2.454941 GGTGGAGAAGGGGGAGGA 59.545 66.667 0.00 0.00 0.00 3.71
127 128 1.690985 GGTGGAGAAGGGGGAGGAG 60.691 68.421 0.00 0.00 0.00 3.69
128 129 1.392534 GTGGAGAAGGGGGAGGAGA 59.607 63.158 0.00 0.00 0.00 3.71
129 130 0.030603 GTGGAGAAGGGGGAGGAGAT 60.031 60.000 0.00 0.00 0.00 2.75
130 131 0.030705 TGGAGAAGGGGGAGGAGATG 60.031 60.000 0.00 0.00 0.00 2.90
131 132 0.766288 GGAGAAGGGGGAGGAGATGG 60.766 65.000 0.00 0.00 0.00 3.51
132 133 0.030603 GAGAAGGGGGAGGAGATGGT 60.031 60.000 0.00 0.00 0.00 3.55
133 134 0.030603 AGAAGGGGGAGGAGATGGTC 60.031 60.000 0.00 0.00 0.00 4.02
134 135 0.030603 GAAGGGGGAGGAGATGGTCT 60.031 60.000 0.00 0.00 0.00 3.85
135 136 0.030603 AAGGGGGAGGAGATGGTCTC 60.031 60.000 0.00 0.00 42.66 3.36
143 144 3.505835 GAGATGGTCTCCTCCGAGT 57.494 57.895 0.00 0.00 37.55 4.18
144 145 1.314730 GAGATGGTCTCCTCCGAGTC 58.685 60.000 0.00 0.00 37.55 3.36
145 146 0.464735 AGATGGTCTCCTCCGAGTCG 60.465 60.000 5.29 5.29 37.40 4.18
146 147 0.748729 GATGGTCTCCTCCGAGTCGT 60.749 60.000 12.31 0.00 37.40 4.34
147 148 0.323542 ATGGTCTCCTCCGAGTCGTT 60.324 55.000 12.31 0.00 37.40 3.85
148 149 0.538977 TGGTCTCCTCCGAGTCGTTT 60.539 55.000 12.31 0.00 37.40 3.60
149 150 0.109226 GGTCTCCTCCGAGTCGTTTG 60.109 60.000 12.31 0.85 37.40 2.93
150 151 0.733223 GTCTCCTCCGAGTCGTTTGC 60.733 60.000 12.31 0.00 37.40 3.68
151 152 1.446272 CTCCTCCGAGTCGTTTGCC 60.446 63.158 12.31 0.00 0.00 4.52
152 153 2.809601 CCTCCGAGTCGTTTGCCG 60.810 66.667 12.31 0.00 38.13 5.69
153 154 2.257371 CTCCGAGTCGTTTGCCGA 59.743 61.111 12.31 0.00 45.00 5.54
160 161 2.357034 TCGTTTGCCGACCAGCTC 60.357 61.111 0.00 0.00 41.60 4.09
161 162 2.357517 CGTTTGCCGACCAGCTCT 60.358 61.111 0.00 0.00 39.56 4.09
162 163 1.961277 CGTTTGCCGACCAGCTCTT 60.961 57.895 0.00 0.00 39.56 2.85
163 164 1.869690 GTTTGCCGACCAGCTCTTC 59.130 57.895 0.00 0.00 0.00 2.87
164 165 0.884704 GTTTGCCGACCAGCTCTTCA 60.885 55.000 0.00 0.00 0.00 3.02
165 166 0.179032 TTTGCCGACCAGCTCTTCAA 60.179 50.000 0.00 0.00 0.00 2.69
166 167 0.179032 TTGCCGACCAGCTCTTCAAA 60.179 50.000 0.00 0.00 0.00 2.69
167 168 0.884704 TGCCGACCAGCTCTTCAAAC 60.885 55.000 0.00 0.00 0.00 2.93
168 169 0.884704 GCCGACCAGCTCTTCAAACA 60.885 55.000 0.00 0.00 0.00 2.83
169 170 1.151668 CCGACCAGCTCTTCAAACAG 58.848 55.000 0.00 0.00 0.00 3.16
170 171 1.270305 CCGACCAGCTCTTCAAACAGA 60.270 52.381 0.00 0.00 0.00 3.41
171 172 1.795286 CGACCAGCTCTTCAAACAGAC 59.205 52.381 0.00 0.00 0.00 3.51
172 173 2.803133 CGACCAGCTCTTCAAACAGACA 60.803 50.000 0.00 0.00 0.00 3.41
173 174 3.206150 GACCAGCTCTTCAAACAGACAA 58.794 45.455 0.00 0.00 0.00 3.18
174 175 3.620488 ACCAGCTCTTCAAACAGACAAA 58.380 40.909 0.00 0.00 0.00 2.83
175 176 4.016444 ACCAGCTCTTCAAACAGACAAAA 58.984 39.130 0.00 0.00 0.00 2.44
176 177 4.096984 ACCAGCTCTTCAAACAGACAAAAG 59.903 41.667 0.00 0.00 0.00 2.27
177 178 4.336433 CCAGCTCTTCAAACAGACAAAAGA 59.664 41.667 0.00 0.00 0.00 2.52
178 179 5.163622 CCAGCTCTTCAAACAGACAAAAGAA 60.164 40.000 0.00 0.00 0.00 2.52
179 180 6.324819 CAGCTCTTCAAACAGACAAAAGAAA 58.675 36.000 0.00 0.00 0.00 2.52
180 181 6.808212 CAGCTCTTCAAACAGACAAAAGAAAA 59.192 34.615 0.00 0.00 0.00 2.29
181 182 7.490402 CAGCTCTTCAAACAGACAAAAGAAAAT 59.510 33.333 0.00 0.00 0.00 1.82
182 183 8.686334 AGCTCTTCAAACAGACAAAAGAAAATA 58.314 29.630 0.00 0.00 0.00 1.40
183 184 8.746751 GCTCTTCAAACAGACAAAAGAAAATAC 58.253 33.333 0.00 0.00 0.00 1.89
184 185 9.237846 CTCTTCAAACAGACAAAAGAAAATACC 57.762 33.333 0.00 0.00 0.00 2.73
185 186 8.744652 TCTTCAAACAGACAAAAGAAAATACCA 58.255 29.630 0.00 0.00 0.00 3.25
186 187 9.533253 CTTCAAACAGACAAAAGAAAATACCAT 57.467 29.630 0.00 0.00 0.00 3.55
187 188 9.528018 TTCAAACAGACAAAAGAAAATACCATC 57.472 29.630 0.00 0.00 0.00 3.51
188 189 8.141268 TCAAACAGACAAAAGAAAATACCATCC 58.859 33.333 0.00 0.00 0.00 3.51
189 190 6.590234 ACAGACAAAAGAAAATACCATCCC 57.410 37.500 0.00 0.00 0.00 3.85
190 191 6.314917 ACAGACAAAAGAAAATACCATCCCT 58.685 36.000 0.00 0.00 0.00 4.20
191 192 6.434340 ACAGACAAAAGAAAATACCATCCCTC 59.566 38.462 0.00 0.00 0.00 4.30
192 193 5.952347 AGACAAAAGAAAATACCATCCCTCC 59.048 40.000 0.00 0.00 0.00 4.30
193 194 5.023452 ACAAAAGAAAATACCATCCCTCCC 58.977 41.667 0.00 0.00 0.00 4.30
194 195 5.222547 ACAAAAGAAAATACCATCCCTCCCT 60.223 40.000 0.00 0.00 0.00 4.20
195 196 5.552430 AAAGAAAATACCATCCCTCCCTT 57.448 39.130 0.00 0.00 0.00 3.95
196 197 4.797912 AGAAAATACCATCCCTCCCTTC 57.202 45.455 0.00 0.00 0.00 3.46
197 198 3.136626 AGAAAATACCATCCCTCCCTTCG 59.863 47.826 0.00 0.00 0.00 3.79
198 199 2.489528 AATACCATCCCTCCCTTCGA 57.510 50.000 0.00 0.00 0.00 3.71
199 200 2.016905 ATACCATCCCTCCCTTCGAG 57.983 55.000 0.00 0.00 38.46 4.04
200 201 0.635009 TACCATCCCTCCCTTCGAGT 59.365 55.000 0.00 0.00 36.82 4.18
201 202 0.978146 ACCATCCCTCCCTTCGAGTG 60.978 60.000 0.00 0.00 36.82 3.51
202 203 0.978146 CCATCCCTCCCTTCGAGTGT 60.978 60.000 0.00 0.00 36.82 3.55
203 204 0.176680 CATCCCTCCCTTCGAGTGTG 59.823 60.000 0.00 0.00 36.82 3.82
204 205 0.041238 ATCCCTCCCTTCGAGTGTGA 59.959 55.000 0.00 0.00 36.82 3.58
205 206 0.041238 TCCCTCCCTTCGAGTGTGAT 59.959 55.000 0.00 0.00 36.82 3.06
206 207 0.461961 CCCTCCCTTCGAGTGTGATC 59.538 60.000 0.00 0.00 36.82 2.92
207 208 0.461961 CCTCCCTTCGAGTGTGATCC 59.538 60.000 0.00 0.00 36.82 3.36
208 209 0.101399 CTCCCTTCGAGTGTGATCCG 59.899 60.000 0.00 0.00 33.51 4.18
209 210 0.323087 TCCCTTCGAGTGTGATCCGA 60.323 55.000 0.00 0.00 0.00 4.55
210 211 0.747255 CCCTTCGAGTGTGATCCGAT 59.253 55.000 0.00 0.00 32.07 4.18
211 212 1.137086 CCCTTCGAGTGTGATCCGATT 59.863 52.381 0.00 0.00 32.07 3.34
212 213 2.418746 CCCTTCGAGTGTGATCCGATTT 60.419 50.000 0.00 0.00 32.07 2.17
213 214 3.262420 CCTTCGAGTGTGATCCGATTTT 58.738 45.455 0.00 0.00 32.07 1.82
214 215 3.684788 CCTTCGAGTGTGATCCGATTTTT 59.315 43.478 0.00 0.00 32.07 1.94
233 234 4.900635 TTTTTCTCAGCTTCTTGTGGAC 57.099 40.909 0.00 0.00 0.00 4.02
234 235 3.558931 TTTCTCAGCTTCTTGTGGACA 57.441 42.857 0.00 0.00 0.00 4.02
235 236 3.558931 TTCTCAGCTTCTTGTGGACAA 57.441 42.857 0.00 0.00 0.00 3.18
236 237 3.777106 TCTCAGCTTCTTGTGGACAAT 57.223 42.857 0.00 0.00 35.02 2.71
237 238 4.890158 TCTCAGCTTCTTGTGGACAATA 57.110 40.909 0.00 0.00 35.02 1.90
238 239 5.227569 TCTCAGCTTCTTGTGGACAATAA 57.772 39.130 0.00 0.00 35.02 1.40
239 240 5.620206 TCTCAGCTTCTTGTGGACAATAAA 58.380 37.500 0.00 0.00 35.02 1.40
240 241 6.240894 TCTCAGCTTCTTGTGGACAATAAAT 58.759 36.000 0.00 0.00 35.02 1.40
241 242 6.716628 TCTCAGCTTCTTGTGGACAATAAATT 59.283 34.615 0.00 0.00 35.02 1.82
242 243 7.231317 TCTCAGCTTCTTGTGGACAATAAATTT 59.769 33.333 0.00 0.00 35.02 1.82
243 244 7.147312 TCAGCTTCTTGTGGACAATAAATTTG 58.853 34.615 0.00 0.00 35.02 2.32
303 304 8.140628 TCGGCCTATGTGTATTATTTACGTTTA 58.859 33.333 0.00 0.00 0.00 2.01
338 339 7.174253 CACATTGGCCTATACGTACCAAAATAT 59.826 37.037 16.56 1.36 44.83 1.28
339 340 8.377034 ACATTGGCCTATACGTACCAAAATATA 58.623 33.333 16.56 0.00 44.83 0.86
351 352 8.036575 ACGTACCAAAATATAAAGTCTAGTGCA 58.963 33.333 0.00 0.00 0.00 4.57
358 359 9.908152 AAAATATAAAGTCTAGTGCAAACCAAC 57.092 29.630 0.00 0.00 0.00 3.77
361 362 2.851195 AGTCTAGTGCAAACCAACCTG 58.149 47.619 0.00 0.00 0.00 4.00
376 377 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
379 380 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
380 381 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
382 383 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
391 392 3.798515 TGGTTAGAGGGACAGTGGTATT 58.201 45.455 0.00 0.00 0.00 1.89
431 433 8.398665 GTTTAAGTCCTGATTCTCGCATTATTT 58.601 33.333 0.00 0.00 0.00 1.40
445 447 8.282592 TCTCGCATTATTTCTGGATTTATTTCG 58.717 33.333 0.00 0.00 0.00 3.46
446 448 7.359595 TCGCATTATTTCTGGATTTATTTCGG 58.640 34.615 0.00 0.00 0.00 4.30
447 449 6.582295 CGCATTATTTCTGGATTTATTTCGGG 59.418 38.462 0.00 0.00 0.00 5.14
448 450 7.521423 CGCATTATTTCTGGATTTATTTCGGGA 60.521 37.037 0.00 0.00 0.00 5.14
449 451 8.306761 GCATTATTTCTGGATTTATTTCGGGAT 58.693 33.333 0.00 0.00 0.00 3.85
453 455 7.954666 TTTCTGGATTTATTTCGGGATTTCT 57.045 32.000 0.00 0.00 0.00 2.52
454 456 6.942532 TCTGGATTTATTTCGGGATTTCTG 57.057 37.500 0.00 0.00 0.00 3.02
455 457 5.827797 TCTGGATTTATTTCGGGATTTCTGG 59.172 40.000 0.00 0.00 0.00 3.86
456 458 4.340950 TGGATTTATTTCGGGATTTCTGGC 59.659 41.667 0.00 0.00 0.00 4.85
457 459 4.537015 GATTTATTTCGGGATTTCTGGCG 58.463 43.478 0.00 0.00 0.00 5.69
458 460 2.992124 TATTTCGGGATTTCTGGCGA 57.008 45.000 0.00 0.00 0.00 5.54
459 461 2.348411 ATTTCGGGATTTCTGGCGAT 57.652 45.000 0.00 0.00 0.00 4.58
460 462 1.378531 TTTCGGGATTTCTGGCGATG 58.621 50.000 0.00 0.00 0.00 3.84
461 463 1.095228 TTCGGGATTTCTGGCGATGC 61.095 55.000 0.00 0.00 0.00 3.91
462 464 1.819208 CGGGATTTCTGGCGATGCA 60.819 57.895 0.00 0.00 0.00 3.96
463 465 1.729881 GGGATTTCTGGCGATGCAC 59.270 57.895 0.00 0.00 0.00 4.57
464 466 1.031571 GGGATTTCTGGCGATGCACA 61.032 55.000 0.00 0.00 0.00 4.57
465 467 0.099436 GGATTTCTGGCGATGCACAC 59.901 55.000 0.00 0.00 0.00 3.82
466 468 1.089920 GATTTCTGGCGATGCACACT 58.910 50.000 0.00 0.00 0.00 3.55
467 469 1.470098 GATTTCTGGCGATGCACACTT 59.530 47.619 0.00 0.00 0.00 3.16
468 470 0.874390 TTTCTGGCGATGCACACTTC 59.126 50.000 0.00 0.00 0.00 3.01
469 471 0.250252 TTCTGGCGATGCACACTTCA 60.250 50.000 0.00 0.00 0.00 3.02
470 472 0.036105 TCTGGCGATGCACACTTCAT 60.036 50.000 0.00 0.00 0.00 2.57
471 473 1.206849 TCTGGCGATGCACACTTCATA 59.793 47.619 0.00 0.00 0.00 2.15
472 474 2.009051 CTGGCGATGCACACTTCATAA 58.991 47.619 0.00 0.00 0.00 1.90
473 475 2.419673 CTGGCGATGCACACTTCATAAA 59.580 45.455 0.00 0.00 0.00 1.40
474 476 3.016031 TGGCGATGCACACTTCATAAAT 58.984 40.909 0.00 0.00 0.00 1.40
475 477 3.065233 TGGCGATGCACACTTCATAAATC 59.935 43.478 0.00 0.00 0.00 2.17
476 478 3.313526 GGCGATGCACACTTCATAAATCT 59.686 43.478 0.00 0.00 0.00 2.40
477 479 4.521943 GCGATGCACACTTCATAAATCTC 58.478 43.478 0.00 0.00 0.00 2.75
478 480 4.034394 GCGATGCACACTTCATAAATCTCA 59.966 41.667 0.00 0.00 0.00 3.27
479 481 5.447683 GCGATGCACACTTCATAAATCTCAA 60.448 40.000 0.00 0.00 0.00 3.02
480 482 6.190264 CGATGCACACTTCATAAATCTCAAG 58.810 40.000 0.00 0.00 0.00 3.02
481 483 6.036408 CGATGCACACTTCATAAATCTCAAGA 59.964 38.462 0.00 0.00 0.00 3.02
482 484 6.486253 TGCACACTTCATAAATCTCAAGAC 57.514 37.500 0.00 0.00 0.00 3.01
483 485 5.120674 TGCACACTTCATAAATCTCAAGACG 59.879 40.000 0.00 0.00 0.00 4.18
484 486 5.348724 GCACACTTCATAAATCTCAAGACGA 59.651 40.000 0.00 0.00 0.00 4.20
485 487 6.036517 GCACACTTCATAAATCTCAAGACGAT 59.963 38.462 0.00 0.00 0.00 3.73
486 488 7.222805 GCACACTTCATAAATCTCAAGACGATA 59.777 37.037 0.00 0.00 0.00 2.92
487 489 9.254133 CACACTTCATAAATCTCAAGACGATAT 57.746 33.333 0.00 0.00 0.00 1.63
488 490 9.254133 ACACTTCATAAATCTCAAGACGATATG 57.746 33.333 0.00 0.00 0.00 1.78
489 491 8.219769 CACTTCATAAATCTCAAGACGATATGC 58.780 37.037 0.00 0.00 0.00 3.14
490 492 7.386299 ACTTCATAAATCTCAAGACGATATGCC 59.614 37.037 0.00 0.00 0.00 4.40
491 493 5.863935 TCATAAATCTCAAGACGATATGCCG 59.136 40.000 0.00 0.00 0.00 5.69
492 494 2.071688 ATCTCAAGACGATATGCCGC 57.928 50.000 0.00 0.00 0.00 6.53
493 495 0.032130 TCTCAAGACGATATGCCGCC 59.968 55.000 0.00 0.00 0.00 6.13
494 496 0.032678 CTCAAGACGATATGCCGCCT 59.967 55.000 0.00 0.00 0.00 5.52
495 497 0.032130 TCAAGACGATATGCCGCCTC 59.968 55.000 0.00 0.00 0.00 4.70
496 498 0.249447 CAAGACGATATGCCGCCTCA 60.249 55.000 0.00 0.00 0.00 3.86
497 499 0.032678 AAGACGATATGCCGCCTCAG 59.967 55.000 0.00 0.00 0.00 3.35
498 500 1.109920 AGACGATATGCCGCCTCAGT 61.110 55.000 0.00 0.00 0.00 3.41
499 501 0.664767 GACGATATGCCGCCTCAGTC 60.665 60.000 0.00 0.00 0.00 3.51
500 502 1.109920 ACGATATGCCGCCTCAGTCT 61.110 55.000 0.00 0.00 0.00 3.24
501 503 0.387878 CGATATGCCGCCTCAGTCTC 60.388 60.000 0.00 0.00 0.00 3.36
502 504 0.965439 GATATGCCGCCTCAGTCTCT 59.035 55.000 0.00 0.00 0.00 3.10
503 505 0.965439 ATATGCCGCCTCAGTCTCTC 59.035 55.000 0.00 0.00 0.00 3.20
504 506 1.448119 TATGCCGCCTCAGTCTCTCG 61.448 60.000 0.00 0.00 0.00 4.04
505 507 4.200283 GCCGCCTCAGTCTCTCGG 62.200 72.222 0.00 0.00 42.68 4.63
506 508 2.438614 CCGCCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.43 4.55
507 509 2.477176 CCGCCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.43 4.63
511 513 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
512 514 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
513 515 0.251386 TCAGTCTCTCGGAGGTGCTT 60.251 55.000 4.96 0.00 0.00 3.91
514 516 1.004394 TCAGTCTCTCGGAGGTGCTTA 59.996 52.381 4.96 0.00 0.00 3.09
515 517 2.028130 CAGTCTCTCGGAGGTGCTTAT 58.972 52.381 4.96 0.00 0.00 1.73
516 518 3.118000 TCAGTCTCTCGGAGGTGCTTATA 60.118 47.826 4.96 0.00 0.00 0.98
517 519 3.252215 CAGTCTCTCGGAGGTGCTTATAG 59.748 52.174 4.96 0.00 0.00 1.31
518 520 3.136809 AGTCTCTCGGAGGTGCTTATAGA 59.863 47.826 4.96 0.00 0.00 1.98
519 521 4.076394 GTCTCTCGGAGGTGCTTATAGAT 58.924 47.826 4.96 0.00 0.00 1.98
520 522 4.075682 TCTCTCGGAGGTGCTTATAGATG 58.924 47.826 4.96 0.00 0.00 2.90
521 523 3.823873 CTCTCGGAGGTGCTTATAGATGT 59.176 47.826 4.96 0.00 0.00 3.06
522 524 3.570125 TCTCGGAGGTGCTTATAGATGTG 59.430 47.826 4.96 0.00 0.00 3.21
523 525 2.035961 TCGGAGGTGCTTATAGATGTGC 59.964 50.000 0.00 0.00 0.00 4.57
524 526 2.224042 CGGAGGTGCTTATAGATGTGCA 60.224 50.000 0.00 0.00 0.00 4.57
525 527 3.555795 CGGAGGTGCTTATAGATGTGCAT 60.556 47.826 0.00 0.00 37.76 3.96
526 528 3.750130 GGAGGTGCTTATAGATGTGCATG 59.250 47.826 0.00 0.00 37.76 4.06
527 529 4.384056 GAGGTGCTTATAGATGTGCATGT 58.616 43.478 0.00 0.00 37.76 3.21
528 530 4.132336 AGGTGCTTATAGATGTGCATGTG 58.868 43.478 0.00 0.00 37.76 3.21
529 531 3.879295 GGTGCTTATAGATGTGCATGTGT 59.121 43.478 0.00 0.00 37.76 3.72
530 532 4.260907 GGTGCTTATAGATGTGCATGTGTG 60.261 45.833 0.00 0.00 37.76 3.82
562 564 4.638865 AGGATGAGTATATGCGCGTATGTA 59.361 41.667 28.29 14.73 0.00 2.29
567 569 5.123344 TGAGTATATGCGCGTATGTATGAGT 59.877 40.000 28.29 13.26 0.00 3.41
584 586 0.673985 AGTGCTTGCGTCTGTACTGA 59.326 50.000 0.00 0.00 0.00 3.41
585 587 1.068588 AGTGCTTGCGTCTGTACTGAA 59.931 47.619 3.77 0.00 0.00 3.02
586 588 1.864711 GTGCTTGCGTCTGTACTGAAA 59.135 47.619 3.77 0.00 0.00 2.69
587 589 2.286833 GTGCTTGCGTCTGTACTGAAAA 59.713 45.455 3.77 0.00 0.00 2.29
611 613 8.608844 AAAAAGTCTGGTAGTACTCTGAATTG 57.391 34.615 0.00 0.00 0.00 2.32
612 614 5.923733 AGTCTGGTAGTACTCTGAATTGG 57.076 43.478 0.00 0.00 0.00 3.16
613 615 5.580998 AGTCTGGTAGTACTCTGAATTGGA 58.419 41.667 0.00 0.00 0.00 3.53
654 663 1.276989 GGTGACAGAATCCGTACCCAA 59.723 52.381 0.00 0.00 0.00 4.12
655 664 2.344025 GTGACAGAATCCGTACCCAAC 58.656 52.381 0.00 0.00 0.00 3.77
656 665 2.028385 GTGACAGAATCCGTACCCAACT 60.028 50.000 0.00 0.00 0.00 3.16
657 666 2.028476 TGACAGAATCCGTACCCAACTG 60.028 50.000 0.00 0.00 0.00 3.16
658 667 2.232941 GACAGAATCCGTACCCAACTGA 59.767 50.000 0.00 0.00 0.00 3.41
735 747 6.099341 ACAAGAAACGAAAAGAAAACTGCAT 58.901 32.000 0.00 0.00 0.00 3.96
740 752 2.668279 CGAAAAGAAAACTGCATCCCCG 60.668 50.000 0.00 0.00 0.00 5.73
830 843 2.744243 AAACCGACCCACCGACCAA 61.744 57.895 0.00 0.00 0.00 3.67
833 846 2.048503 CGACCCACCGACCAAGAC 60.049 66.667 0.00 0.00 0.00 3.01
834 847 2.048503 GACCCACCGACCAAGACG 60.049 66.667 0.00 0.00 0.00 4.18
936 966 4.845580 AGCCTGAATCCGCGCCAG 62.846 66.667 0.00 2.20 0.00 4.85
1057 1087 1.481056 CCACCTCCTCGACCAAGGTT 61.481 60.000 6.00 0.00 41.48 3.50
1063 1093 1.080093 CTCGACCAAGGTTAGCGCA 60.080 57.895 11.47 0.00 0.00 6.09
1064 1094 0.669318 CTCGACCAAGGTTAGCGCAA 60.669 55.000 11.47 0.00 0.00 4.85
1066 1096 0.669318 CGACCAAGGTTAGCGCAAGA 60.669 55.000 11.47 0.00 43.02 3.02
1067 1097 1.079503 GACCAAGGTTAGCGCAAGAG 58.920 55.000 11.47 0.00 43.02 2.85
1068 1098 0.955919 ACCAAGGTTAGCGCAAGAGC 60.956 55.000 11.47 4.29 43.02 4.09
1078 1108 3.435186 GCAAGAGCGGCCCTTCAC 61.435 66.667 0.00 0.00 0.00 3.18
1079 1109 2.747855 CAAGAGCGGCCCTTCACC 60.748 66.667 0.00 0.00 0.00 4.02
1080 1110 4.035102 AAGAGCGGCCCTTCACCC 62.035 66.667 0.00 0.00 0.00 4.61
1085 1115 3.330720 CGGCCCTTCACCCCTTCT 61.331 66.667 0.00 0.00 0.00 2.85
1086 1116 2.677848 GGCCCTTCACCCCTTCTC 59.322 66.667 0.00 0.00 0.00 2.87
1087 1117 1.925972 GGCCCTTCACCCCTTCTCT 60.926 63.158 0.00 0.00 0.00 3.10
1088 1118 1.501654 GGCCCTTCACCCCTTCTCTT 61.502 60.000 0.00 0.00 0.00 2.85
1089 1119 0.034960 GCCCTTCACCCCTTCTCTTC 60.035 60.000 0.00 0.00 0.00 2.87
1090 1120 1.662686 CCCTTCACCCCTTCTCTTCT 58.337 55.000 0.00 0.00 0.00 2.85
1091 1121 1.557371 CCCTTCACCCCTTCTCTTCTC 59.443 57.143 0.00 0.00 0.00 2.87
1092 1122 1.557371 CCTTCACCCCTTCTCTTCTCC 59.443 57.143 0.00 0.00 0.00 3.71
1093 1123 1.557371 CTTCACCCCTTCTCTTCTCCC 59.443 57.143 0.00 0.00 0.00 4.30
1094 1124 0.252742 TCACCCCTTCTCTTCTCCCC 60.253 60.000 0.00 0.00 0.00 4.81
1095 1125 1.083141 ACCCCTTCTCTTCTCCCCC 59.917 63.158 0.00 0.00 0.00 5.40
1096 1126 2.066999 CCCCTTCTCTTCTCCCCCG 61.067 68.421 0.00 0.00 0.00 5.73
1161 1444 2.665008 TTTGCTCGGTGCTGACTGCT 62.665 55.000 5.87 0.00 43.37 4.24
1162 1445 3.117171 GCTCGGTGCTGACTGCTG 61.117 66.667 5.87 0.00 43.37 4.41
1163 1446 2.653115 CTCGGTGCTGACTGCTGA 59.347 61.111 5.87 1.01 43.37 4.26
1164 1447 1.005748 CTCGGTGCTGACTGCTGAA 60.006 57.895 5.87 0.00 43.37 3.02
1165 1448 0.390866 CTCGGTGCTGACTGCTGAAT 60.391 55.000 5.87 0.00 43.37 2.57
1166 1449 0.671472 TCGGTGCTGACTGCTGAATG 60.671 55.000 5.87 0.00 43.37 2.67
1167 1450 1.505353 GGTGCTGACTGCTGAATGC 59.495 57.895 5.87 0.00 43.37 3.56
1168 1451 0.959372 GGTGCTGACTGCTGAATGCT 60.959 55.000 5.87 0.00 43.37 3.79
1169 1452 0.168348 GTGCTGACTGCTGAATGCTG 59.832 55.000 5.87 0.00 44.70 4.41
1170 1453 0.035739 TGCTGACTGCTGAATGCTGA 59.964 50.000 5.87 0.00 42.27 4.26
1171 1454 0.447011 GCTGACTGCTGAATGCTGAC 59.553 55.000 0.00 0.00 42.27 3.51
1172 1455 1.944892 GCTGACTGCTGAATGCTGACT 60.945 52.381 0.00 0.00 42.27 3.41
1173 1456 1.732809 CTGACTGCTGAATGCTGACTG 59.267 52.381 0.00 0.00 42.27 3.51
1174 1457 1.085091 GACTGCTGAATGCTGACTGG 58.915 55.000 0.00 0.00 42.27 4.00
1309 1592 4.319118 GCAGTACTCTGTTTTCTGCTTCAC 60.319 45.833 7.98 0.00 45.14 3.18
1317 1600 3.378112 TGTTTTCTGCTTCACTTGGACTG 59.622 43.478 0.00 0.00 0.00 3.51
1322 1605 3.256879 TCTGCTTCACTTGGACTGTAGAG 59.743 47.826 0.00 0.00 0.00 2.43
1323 1606 2.965831 TGCTTCACTTGGACTGTAGAGT 59.034 45.455 0.00 0.00 33.98 3.24
1324 1607 3.243873 TGCTTCACTTGGACTGTAGAGTG 60.244 47.826 0.00 9.93 40.56 3.51
1325 1608 3.243907 GCTTCACTTGGACTGTAGAGTGT 60.244 47.826 0.00 0.00 40.21 3.55
1326 1609 4.022242 GCTTCACTTGGACTGTAGAGTGTA 60.022 45.833 0.00 7.00 40.21 2.90
1327 1610 5.704888 CTTCACTTGGACTGTAGAGTGTAG 58.295 45.833 0.00 11.15 40.21 2.74
1328 1611 4.981812 TCACTTGGACTGTAGAGTGTAGA 58.018 43.478 0.00 0.00 40.21 2.59
1350 1633 5.244851 AGACAATCACTTAGTTCAGCTCAGA 59.755 40.000 0.00 0.00 0.00 3.27
1407 1690 7.056635 TCAGGGAAGATGGATTTTTAGATGAC 58.943 38.462 0.00 0.00 0.00 3.06
1424 1707 6.589830 AGATGACGGAAACTTTCATTATCG 57.410 37.500 3.93 0.63 32.58 2.92
1549 1833 2.364632 TGTTTGGCGATAGATGGTTGG 58.635 47.619 0.00 0.00 39.76 3.77
1550 1834 2.290641 TGTTTGGCGATAGATGGTTGGT 60.291 45.455 0.00 0.00 39.76 3.67
1551 1835 2.752903 GTTTGGCGATAGATGGTTGGTT 59.247 45.455 0.00 0.00 39.76 3.67
1552 1836 2.036958 TGGCGATAGATGGTTGGTTG 57.963 50.000 0.00 0.00 39.76 3.77
1565 1849 6.384015 AGATGGTTGGTTGATATCAGTCACTA 59.616 38.462 5.39 0.00 0.00 2.74
1593 1877 1.239968 CCAAGTCTGCTGGCCACTTC 61.240 60.000 0.00 0.00 0.00 3.01
1603 1888 0.746063 TGGCCACTTCTGTTTGCAAG 59.254 50.000 0.00 0.00 0.00 4.01
1734 2019 8.067751 TGATATGATAGATTTTCGGTAGGGAG 57.932 38.462 0.00 0.00 0.00 4.30
1814 2099 1.539827 CCACACGTTTGGGATTTCTCC 59.460 52.381 13.13 0.00 41.26 3.71
1949 2234 3.769844 ACTCGAAGCCTCCTGATCTTTTA 59.230 43.478 0.00 0.00 0.00 1.52
2013 2298 3.756434 TCCTCACTAAAATTTCCTTGCCG 59.244 43.478 0.00 0.00 0.00 5.69
2124 2409 1.968540 GGCACTGGTCTCAGGTTGC 60.969 63.158 0.00 0.00 44.99 4.17
2194 2479 1.280421 ACTGAAATGCTCCCTGAGACC 59.720 52.381 0.00 0.00 0.00 3.85
2734 3019 2.092429 TGCCACTTACATCTGGAATCCC 60.092 50.000 0.00 0.00 0.00 3.85
2811 3096 7.098845 AGTTCCCCTTCTAATTTTAGGAACA 57.901 36.000 18.29 0.00 33.36 3.18
3049 3339 3.489355 ACCTCTGCAACAACATGATGAA 58.511 40.909 10.29 0.00 0.00 2.57
3092 3382 2.280797 ATCGCGCACCACAACACT 60.281 55.556 8.75 0.00 0.00 3.55
3101 3391 3.548014 CGCACCACAACACTAAGGAAAAG 60.548 47.826 0.00 0.00 0.00 2.27
3132 3422 2.887151 AAAGAGCAATACCCACAGCT 57.113 45.000 0.00 0.00 40.60 4.24
3402 3698 1.133181 TCCAGAATGTGCACCAGGGA 61.133 55.000 15.69 11.22 0.00 4.20
3404 3700 1.100510 CAGAATGTGCACCAGGGATG 58.899 55.000 15.69 1.94 0.00 3.51
3409 3705 1.304282 GTGCACCAGGGATGTCCAT 59.696 57.895 5.22 0.00 38.24 3.41
3488 3784 8.058847 TCATAAAATGGTAAGGTCTTGGCTTAT 58.941 33.333 0.00 0.00 0.00 1.73
3671 3967 3.674997 TGCCTGTCTTAAGCCAGTTAAG 58.325 45.455 12.25 0.00 46.42 1.85
3742 4038 6.509418 TGGACAATTGCAGAAACCTATAAC 57.491 37.500 5.05 0.00 0.00 1.89
3978 4275 0.038892 CTTCCAATGCTGTGCACCAC 60.039 55.000 15.69 6.83 43.04 4.16
3991 4288 7.279615 TGCTGTGCACCACTACTTATTTATAT 58.720 34.615 15.69 0.00 35.11 0.86
4039 4336 5.530915 CCCTTGAATTATCCGTTGCAGATAA 59.469 40.000 8.76 8.76 39.76 1.75
4242 4547 7.641411 CACGATTTTGCATTCTGAAACTATAGG 59.359 37.037 4.43 0.00 0.00 2.57
4267 4575 7.310237 GGTCTCTATGAAAACACTACCTTGGTA 60.310 40.741 0.00 0.00 0.00 3.25
4298 4606 8.141909 TGGGTCTTTATGAGATACAAGTAATCG 58.858 37.037 0.00 0.00 36.61 3.34
4322 4630 8.875803 TCGTGTTCAGACCATAATTAATTGTAC 58.124 33.333 11.05 0.00 0.00 2.90
4459 4767 9.807649 ATTGACCATATACTTCTTTTGCAAATC 57.192 29.630 13.65 3.26 0.00 2.17
4769 5081 7.254727 GCCAAGATCATCTAGTTCATTTGAGAC 60.255 40.741 0.00 0.00 0.00 3.36
4808 5120 2.887152 CCTTGCTTATGTTCCATAGCCC 59.113 50.000 0.00 0.00 32.73 5.19
5206 5519 3.009723 CAGCGTGTTGGAAGGTATTGAT 58.990 45.455 0.00 0.00 0.00 2.57
5215 5528 5.912149 TGGAAGGTATTGATGCCTAAGAT 57.088 39.130 0.87 0.00 42.38 2.40
5326 5639 5.372373 CAAGAGAGGACAAGAAAGAAGGTT 58.628 41.667 0.00 0.00 0.00 3.50
5526 5839 0.901114 TCCCCCATTTCTGTCGACGA 60.901 55.000 11.62 8.49 0.00 4.20
5557 5870 1.024271 AAAAGCTTCGTTGAGCAGCA 58.976 45.000 0.00 0.00 45.12 4.41
5661 5974 1.032014 TCAAGCAGGGTTCTTTGCAC 58.968 50.000 0.00 0.00 42.67 4.57
5676 5989 1.040893 TGCACGTAGACATCCCCGAT 61.041 55.000 0.00 0.00 0.00 4.18
5794 6115 2.261671 GTCCGTGATGTCAGCGGT 59.738 61.111 17.30 0.00 39.64 5.68
5986 6307 5.048083 ACCTGTTGTATACTTTGGCAATGTG 60.048 40.000 24.20 10.56 0.00 3.21
6117 6438 0.961019 TTGCCATCTGTTGCCACTTC 59.039 50.000 0.00 0.00 0.00 3.01
6201 6536 6.642131 GCATTTCAGAAGATGTTGCAACTTAA 59.358 34.615 28.61 10.80 33.52 1.85
6202 6537 7.358683 GCATTTCAGAAGATGTTGCAACTTAAC 60.359 37.037 28.61 16.70 33.52 2.01
6203 6538 6.942532 TTCAGAAGATGTTGCAACTTAACT 57.057 33.333 28.61 18.40 0.00 2.24
6204 6539 6.942532 TCAGAAGATGTTGCAACTTAACTT 57.057 33.333 28.61 24.06 0.00 2.66
6205 6540 8.445275 TTCAGAAGATGTTGCAACTTAACTTA 57.555 30.769 28.61 8.52 0.00 2.24
6208 6543 8.128582 CAGAAGATGTTGCAACTTAACTTACAA 58.871 33.333 28.61 6.27 0.00 2.41
6305 6642 1.609208 ATTCCACGGCCATTGATAGC 58.391 50.000 2.24 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.796475 GCCAATAAATGATGAGCTATAAAAGGA 58.204 33.333 0.00 0.00 0.00 3.36
3 4 8.579006 TGCCAATAAATGATGAGCTATAAAAGG 58.421 33.333 0.00 0.00 0.00 3.11
4 5 9.970395 TTGCCAATAAATGATGAGCTATAAAAG 57.030 29.630 0.00 0.00 0.00 2.27
6 7 9.970395 CTTTGCCAATAAATGATGAGCTATAAA 57.030 29.630 0.00 0.00 0.00 1.40
7 8 9.353431 TCTTTGCCAATAAATGATGAGCTATAA 57.647 29.630 0.00 0.00 0.00 0.98
8 9 8.922931 TCTTTGCCAATAAATGATGAGCTATA 57.077 30.769 0.00 0.00 0.00 1.31
9 10 7.828508 TCTTTGCCAATAAATGATGAGCTAT 57.171 32.000 0.00 0.00 0.00 2.97
10 11 7.828508 ATCTTTGCCAATAAATGATGAGCTA 57.171 32.000 0.00 0.00 0.00 3.32
11 12 6.726490 ATCTTTGCCAATAAATGATGAGCT 57.274 33.333 0.00 0.00 0.00 4.09
12 13 7.879070 TCTATCTTTGCCAATAAATGATGAGC 58.121 34.615 0.00 0.00 0.00 4.26
24 25 9.859427 CATATTGACTTTTTCTATCTTTGCCAA 57.141 29.630 0.00 0.00 0.00 4.52
25 26 9.241919 TCATATTGACTTTTTCTATCTTTGCCA 57.758 29.630 0.00 0.00 0.00 4.92
35 36 9.799106 TTCTCCTTCTTCATATTGACTTTTTCT 57.201 29.630 0.00 0.00 0.00 2.52
38 39 9.799106 TCTTTCTCCTTCTTCATATTGACTTTT 57.201 29.630 0.00 0.00 0.00 2.27
39 40 9.799106 TTCTTTCTCCTTCTTCATATTGACTTT 57.201 29.630 0.00 0.00 0.00 2.66
40 41 9.799106 TTTCTTTCTCCTTCTTCATATTGACTT 57.201 29.630 0.00 0.00 0.00 3.01
41 42 9.225436 GTTTCTTTCTCCTTCTTCATATTGACT 57.775 33.333 0.00 0.00 0.00 3.41
42 43 9.003658 TGTTTCTTTCTCCTTCTTCATATTGAC 57.996 33.333 0.00 0.00 0.00 3.18
43 44 9.573166 TTGTTTCTTTCTCCTTCTTCATATTGA 57.427 29.630 0.00 0.00 0.00 2.57
51 52 8.989980 CGTTACTATTGTTTCTTTCTCCTTCTT 58.010 33.333 0.00 0.00 0.00 2.52
52 53 8.148999 ACGTTACTATTGTTTCTTTCTCCTTCT 58.851 33.333 0.00 0.00 0.00 2.85
53 54 8.221766 CACGTTACTATTGTTTCTTTCTCCTTC 58.778 37.037 0.00 0.00 0.00 3.46
54 55 7.172703 CCACGTTACTATTGTTTCTTTCTCCTT 59.827 37.037 0.00 0.00 0.00 3.36
55 56 6.649557 CCACGTTACTATTGTTTCTTTCTCCT 59.350 38.462 0.00 0.00 0.00 3.69
56 57 6.647895 TCCACGTTACTATTGTTTCTTTCTCC 59.352 38.462 0.00 0.00 0.00 3.71
57 58 7.647907 TCCACGTTACTATTGTTTCTTTCTC 57.352 36.000 0.00 0.00 0.00 2.87
58 59 7.172703 CCTTCCACGTTACTATTGTTTCTTTCT 59.827 37.037 0.00 0.00 0.00 2.52
59 60 7.295930 CCTTCCACGTTACTATTGTTTCTTTC 58.704 38.462 0.00 0.00 0.00 2.62
60 61 6.206048 CCCTTCCACGTTACTATTGTTTCTTT 59.794 38.462 0.00 0.00 0.00 2.52
61 62 5.704053 CCCTTCCACGTTACTATTGTTTCTT 59.296 40.000 0.00 0.00 0.00 2.52
62 63 5.012354 TCCCTTCCACGTTACTATTGTTTCT 59.988 40.000 0.00 0.00 0.00 2.52
63 64 5.240121 TCCCTTCCACGTTACTATTGTTTC 58.760 41.667 0.00 0.00 0.00 2.78
64 65 5.231702 TCCCTTCCACGTTACTATTGTTT 57.768 39.130 0.00 0.00 0.00 2.83
65 66 4.895668 TCCCTTCCACGTTACTATTGTT 57.104 40.909 0.00 0.00 0.00 2.83
66 67 4.895668 TTCCCTTCCACGTTACTATTGT 57.104 40.909 0.00 0.00 0.00 2.71
67 68 5.350640 GTCTTTCCCTTCCACGTTACTATTG 59.649 44.000 0.00 0.00 0.00 1.90
68 69 5.485620 GTCTTTCCCTTCCACGTTACTATT 58.514 41.667 0.00 0.00 0.00 1.73
69 70 4.381292 CGTCTTTCCCTTCCACGTTACTAT 60.381 45.833 0.00 0.00 0.00 2.12
70 71 3.057315 CGTCTTTCCCTTCCACGTTACTA 60.057 47.826 0.00 0.00 0.00 1.82
71 72 2.288640 CGTCTTTCCCTTCCACGTTACT 60.289 50.000 0.00 0.00 0.00 2.24
72 73 2.064014 CGTCTTTCCCTTCCACGTTAC 58.936 52.381 0.00 0.00 0.00 2.50
73 74 1.688197 ACGTCTTTCCCTTCCACGTTA 59.312 47.619 0.00 0.00 40.68 3.18
74 75 0.466963 ACGTCTTTCCCTTCCACGTT 59.533 50.000 0.00 0.00 40.68 3.99
75 76 0.466963 AACGTCTTTCCCTTCCACGT 59.533 50.000 0.00 0.00 45.23 4.49
76 77 1.145803 GAACGTCTTTCCCTTCCACG 58.854 55.000 0.00 0.00 36.54 4.94
77 78 2.143925 CTGAACGTCTTTCCCTTCCAC 58.856 52.381 0.00 0.00 32.58 4.02
78 79 1.071699 CCTGAACGTCTTTCCCTTCCA 59.928 52.381 0.00 0.00 32.58 3.53
79 80 1.071857 ACCTGAACGTCTTTCCCTTCC 59.928 52.381 0.00 0.00 32.58 3.46
80 81 2.545537 ACCTGAACGTCTTTCCCTTC 57.454 50.000 0.00 0.00 32.58 3.46
81 82 3.292492 AAACCTGAACGTCTTTCCCTT 57.708 42.857 0.00 0.00 32.58 3.95
82 83 3.244457 CCTAAACCTGAACGTCTTTCCCT 60.244 47.826 0.00 0.00 32.58 4.20
83 84 3.072211 CCTAAACCTGAACGTCTTTCCC 58.928 50.000 0.00 0.00 32.58 3.97
84 85 3.072211 CCCTAAACCTGAACGTCTTTCC 58.928 50.000 0.00 0.00 32.58 3.13
85 86 3.072211 CCCCTAAACCTGAACGTCTTTC 58.928 50.000 0.00 0.00 34.41 2.62
86 87 2.224695 CCCCCTAAACCTGAACGTCTTT 60.225 50.000 0.00 0.00 0.00 2.52
87 88 1.350019 CCCCCTAAACCTGAACGTCTT 59.650 52.381 0.00 0.00 0.00 3.01
88 89 0.981943 CCCCCTAAACCTGAACGTCT 59.018 55.000 0.00 0.00 0.00 4.18
89 90 0.689055 ACCCCCTAAACCTGAACGTC 59.311 55.000 0.00 0.00 0.00 4.34
90 91 0.399075 CACCCCCTAAACCTGAACGT 59.601 55.000 0.00 0.00 0.00 3.99
91 92 0.322187 CCACCCCCTAAACCTGAACG 60.322 60.000 0.00 0.00 0.00 3.95
92 93 0.775542 ACCACCCCCTAAACCTGAAC 59.224 55.000 0.00 0.00 0.00 3.18
93 94 0.774908 CACCACCCCCTAAACCTGAA 59.225 55.000 0.00 0.00 0.00 3.02
94 95 1.137594 CCACCACCCCCTAAACCTGA 61.138 60.000 0.00 0.00 0.00 3.86
95 96 1.137594 TCCACCACCCCCTAAACCTG 61.138 60.000 0.00 0.00 0.00 4.00
96 97 0.845102 CTCCACCACCCCCTAAACCT 60.845 60.000 0.00 0.00 0.00 3.50
97 98 0.843343 TCTCCACCACCCCCTAAACC 60.843 60.000 0.00 0.00 0.00 3.27
98 99 1.004394 CTTCTCCACCACCCCCTAAAC 59.996 57.143 0.00 0.00 0.00 2.01
99 100 1.368374 CTTCTCCACCACCCCCTAAA 58.632 55.000 0.00 0.00 0.00 1.85
100 101 0.549169 CCTTCTCCACCACCCCCTAA 60.549 60.000 0.00 0.00 0.00 2.69
101 102 1.082206 CCTTCTCCACCACCCCCTA 59.918 63.158 0.00 0.00 0.00 3.53
102 103 2.204151 CCTTCTCCACCACCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
103 104 3.339093 CCCTTCTCCACCACCCCC 61.339 72.222 0.00 0.00 0.00 5.40
104 105 3.339093 CCCCTTCTCCACCACCCC 61.339 72.222 0.00 0.00 0.00 4.95
105 106 3.339093 CCCCCTTCTCCACCACCC 61.339 72.222 0.00 0.00 0.00 4.61
106 107 2.204090 TCCCCCTTCTCCACCACC 60.204 66.667 0.00 0.00 0.00 4.61
107 108 2.301738 CCTCCCCCTTCTCCACCAC 61.302 68.421 0.00 0.00 0.00 4.16
108 109 2.124996 CCTCCCCCTTCTCCACCA 59.875 66.667 0.00 0.00 0.00 4.17
109 110 1.690985 CTCCTCCCCCTTCTCCACC 60.691 68.421 0.00 0.00 0.00 4.61
110 111 0.030603 ATCTCCTCCCCCTTCTCCAC 60.031 60.000 0.00 0.00 0.00 4.02
111 112 0.030705 CATCTCCTCCCCCTTCTCCA 60.031 60.000 0.00 0.00 0.00 3.86
112 113 0.766288 CCATCTCCTCCCCCTTCTCC 60.766 65.000 0.00 0.00 0.00 3.71
113 114 0.030603 ACCATCTCCTCCCCCTTCTC 60.031 60.000 0.00 0.00 0.00 2.87
114 115 0.030603 GACCATCTCCTCCCCCTTCT 60.031 60.000 0.00 0.00 0.00 2.85
115 116 0.030603 AGACCATCTCCTCCCCCTTC 60.031 60.000 0.00 0.00 0.00 3.46
116 117 0.030603 GAGACCATCTCCTCCCCCTT 60.031 60.000 0.00 0.00 37.55 3.95
117 118 1.629297 GAGACCATCTCCTCCCCCT 59.371 63.158 0.00 0.00 37.55 4.79
118 119 4.304432 GAGACCATCTCCTCCCCC 57.696 66.667 0.00 0.00 37.55 5.40
125 126 1.314730 GACTCGGAGGAGACCATCTC 58.685 60.000 10.23 0.00 43.27 2.75
126 127 0.464735 CGACTCGGAGGAGACCATCT 60.465 60.000 10.23 0.00 43.27 2.90
127 128 0.748729 ACGACTCGGAGGAGACCATC 60.749 60.000 10.23 0.00 43.27 3.51
128 129 0.323542 AACGACTCGGAGGAGACCAT 60.324 55.000 10.23 0.00 43.27 3.55
129 130 0.538977 AAACGACTCGGAGGAGACCA 60.539 55.000 10.23 0.00 43.27 4.02
130 131 0.109226 CAAACGACTCGGAGGAGACC 60.109 60.000 10.23 0.00 43.27 3.85
131 132 0.733223 GCAAACGACTCGGAGGAGAC 60.733 60.000 10.23 0.00 43.27 3.36
132 133 1.585006 GCAAACGACTCGGAGGAGA 59.415 57.895 10.23 0.00 43.27 3.71
133 134 1.446272 GGCAAACGACTCGGAGGAG 60.446 63.158 10.23 5.26 46.13 3.69
134 135 2.654877 GGCAAACGACTCGGAGGA 59.345 61.111 10.23 0.00 0.00 3.71
144 145 1.901650 GAAGAGCTGGTCGGCAAACG 61.902 60.000 0.00 0.00 46.11 3.60
145 146 0.884704 TGAAGAGCTGGTCGGCAAAC 60.885 55.000 0.00 0.00 34.17 2.93
146 147 0.179032 TTGAAGAGCTGGTCGGCAAA 60.179 50.000 12.58 0.79 34.17 3.68
147 148 0.179032 TTTGAAGAGCTGGTCGGCAA 60.179 50.000 11.45 11.45 34.17 4.52
148 149 0.884704 GTTTGAAGAGCTGGTCGGCA 60.885 55.000 0.00 1.17 34.17 5.69
149 150 0.884704 TGTTTGAAGAGCTGGTCGGC 60.885 55.000 0.00 0.00 0.00 5.54
150 151 1.151668 CTGTTTGAAGAGCTGGTCGG 58.848 55.000 0.00 0.00 0.00 4.79
151 152 1.795286 GTCTGTTTGAAGAGCTGGTCG 59.205 52.381 0.00 0.00 0.00 4.79
152 153 2.838736 TGTCTGTTTGAAGAGCTGGTC 58.161 47.619 0.00 0.00 0.00 4.02
153 154 3.281727 TTGTCTGTTTGAAGAGCTGGT 57.718 42.857 0.00 0.00 0.00 4.00
154 155 4.336433 TCTTTTGTCTGTTTGAAGAGCTGG 59.664 41.667 0.00 0.00 0.00 4.85
155 156 5.490139 TCTTTTGTCTGTTTGAAGAGCTG 57.510 39.130 0.00 0.00 0.00 4.24
156 157 6.515272 TTTCTTTTGTCTGTTTGAAGAGCT 57.485 33.333 0.00 0.00 0.00 4.09
157 158 7.761651 ATTTTCTTTTGTCTGTTTGAAGAGC 57.238 32.000 0.00 0.00 0.00 4.09
158 159 9.237846 GGTATTTTCTTTTGTCTGTTTGAAGAG 57.762 33.333 0.00 0.00 0.00 2.85
159 160 8.744652 TGGTATTTTCTTTTGTCTGTTTGAAGA 58.255 29.630 0.00 0.00 0.00 2.87
160 161 8.925161 TGGTATTTTCTTTTGTCTGTTTGAAG 57.075 30.769 0.00 0.00 0.00 3.02
161 162 9.528018 GATGGTATTTTCTTTTGTCTGTTTGAA 57.472 29.630 0.00 0.00 0.00 2.69
162 163 8.141268 GGATGGTATTTTCTTTTGTCTGTTTGA 58.859 33.333 0.00 0.00 0.00 2.69
163 164 7.384932 GGGATGGTATTTTCTTTTGTCTGTTTG 59.615 37.037 0.00 0.00 0.00 2.93
164 165 7.290014 AGGGATGGTATTTTCTTTTGTCTGTTT 59.710 33.333 0.00 0.00 0.00 2.83
165 166 6.782494 AGGGATGGTATTTTCTTTTGTCTGTT 59.218 34.615 0.00 0.00 0.00 3.16
166 167 6.314917 AGGGATGGTATTTTCTTTTGTCTGT 58.685 36.000 0.00 0.00 0.00 3.41
167 168 6.127619 GGAGGGATGGTATTTTCTTTTGTCTG 60.128 42.308 0.00 0.00 0.00 3.51
168 169 5.952347 GGAGGGATGGTATTTTCTTTTGTCT 59.048 40.000 0.00 0.00 0.00 3.41
169 170 5.127194 GGGAGGGATGGTATTTTCTTTTGTC 59.873 44.000 0.00 0.00 0.00 3.18
170 171 5.023452 GGGAGGGATGGTATTTTCTTTTGT 58.977 41.667 0.00 0.00 0.00 2.83
171 172 5.272402 AGGGAGGGATGGTATTTTCTTTTG 58.728 41.667 0.00 0.00 0.00 2.44
172 173 5.552430 AGGGAGGGATGGTATTTTCTTTT 57.448 39.130 0.00 0.00 0.00 2.27
173 174 5.519808 GAAGGGAGGGATGGTATTTTCTTT 58.480 41.667 0.00 0.00 0.00 2.52
174 175 4.385310 CGAAGGGAGGGATGGTATTTTCTT 60.385 45.833 0.00 0.00 0.00 2.52
175 176 3.136626 CGAAGGGAGGGATGGTATTTTCT 59.863 47.826 0.00 0.00 0.00 2.52
176 177 3.135895 TCGAAGGGAGGGATGGTATTTTC 59.864 47.826 0.00 0.00 0.00 2.29
177 178 3.120108 TCGAAGGGAGGGATGGTATTTT 58.880 45.455 0.00 0.00 0.00 1.82
178 179 2.706190 CTCGAAGGGAGGGATGGTATTT 59.294 50.000 0.00 0.00 39.22 1.40
179 180 2.330216 CTCGAAGGGAGGGATGGTATT 58.670 52.381 0.00 0.00 39.22 1.89
180 181 2.016905 CTCGAAGGGAGGGATGGTAT 57.983 55.000 0.00 0.00 39.22 2.73
181 182 3.533697 CTCGAAGGGAGGGATGGTA 57.466 57.895 0.00 0.00 39.22 3.25
182 183 4.382852 CTCGAAGGGAGGGATGGT 57.617 61.111 0.00 0.00 39.22 3.55
190 191 0.323087 TCGGATCACACTCGAAGGGA 60.323 55.000 0.00 0.00 0.00 4.20
191 192 0.747255 ATCGGATCACACTCGAAGGG 59.253 55.000 0.00 0.00 36.49 3.95
192 193 2.586258 AATCGGATCACACTCGAAGG 57.414 50.000 0.00 0.00 36.49 3.46
193 194 4.928661 AAAAATCGGATCACACTCGAAG 57.071 40.909 0.00 0.00 36.49 3.79
212 213 4.269183 TGTCCACAAGAAGCTGAGAAAAA 58.731 39.130 0.00 0.00 0.00 1.94
213 214 3.884895 TGTCCACAAGAAGCTGAGAAAA 58.115 40.909 0.00 0.00 0.00 2.29
214 215 3.558931 TGTCCACAAGAAGCTGAGAAA 57.441 42.857 0.00 0.00 0.00 2.52
215 216 3.558931 TTGTCCACAAGAAGCTGAGAA 57.441 42.857 0.00 0.00 0.00 2.87
216 217 3.777106 ATTGTCCACAAGAAGCTGAGA 57.223 42.857 0.00 0.00 39.47 3.27
217 218 5.947228 TTTATTGTCCACAAGAAGCTGAG 57.053 39.130 0.23 0.00 38.16 3.35
218 219 6.899393 AATTTATTGTCCACAAGAAGCTGA 57.101 33.333 0.23 0.00 38.16 4.26
219 220 7.147312 TCAAATTTATTGTCCACAAGAAGCTG 58.853 34.615 0.23 0.93 38.16 4.24
220 221 7.231317 TCTCAAATTTATTGTCCACAAGAAGCT 59.769 33.333 0.23 0.00 38.16 3.74
221 222 7.370383 TCTCAAATTTATTGTCCACAAGAAGC 58.630 34.615 0.23 0.00 38.16 3.86
222 223 9.748708 TTTCTCAAATTTATTGTCCACAAGAAG 57.251 29.630 0.23 0.00 38.16 2.85
263 264 5.708230 ACATAGGCCGATGTTTTCTTTTACA 59.292 36.000 24.21 0.00 36.64 2.41
270 271 5.751243 AATACACATAGGCCGATGTTTTC 57.249 39.130 26.87 0.00 37.99 2.29
303 304 6.826741 ACGTATAGGCCAATGTGTTTTCTAAT 59.173 34.615 5.01 0.00 0.00 1.73
306 307 4.585879 ACGTATAGGCCAATGTGTTTTCT 58.414 39.130 5.01 0.00 0.00 2.52
307 308 4.957759 ACGTATAGGCCAATGTGTTTTC 57.042 40.909 5.01 0.00 0.00 2.29
312 313 3.462483 TGGTACGTATAGGCCAATGTG 57.538 47.619 5.01 0.00 0.00 3.21
338 339 4.819630 CAGGTTGGTTTGCACTAGACTTTA 59.180 41.667 0.00 0.00 0.00 1.85
339 340 3.632145 CAGGTTGGTTTGCACTAGACTTT 59.368 43.478 0.00 0.00 0.00 2.66
346 347 2.503775 CCACAGGTTGGTTTGCACT 58.496 52.632 0.00 0.00 41.10 4.40
358 359 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
361 362 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
369 370 2.344093 ACCACTGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
408 410 7.439356 CAGAAATAATGCGAGAATCAGGACTTA 59.561 37.037 0.00 0.00 33.17 2.24
413 415 5.059161 TCCAGAAATAATGCGAGAATCAGG 58.941 41.667 0.00 0.00 33.17 3.86
419 421 8.282592 CGAAATAAATCCAGAAATAATGCGAGA 58.717 33.333 0.00 0.00 0.00 4.04
431 433 5.827797 CCAGAAATCCCGAAATAAATCCAGA 59.172 40.000 0.00 0.00 0.00 3.86
445 447 1.031571 TGTGCATCGCCAGAAATCCC 61.032 55.000 0.00 0.00 0.00 3.85
446 448 0.099436 GTGTGCATCGCCAGAAATCC 59.901 55.000 0.00 0.00 0.00 3.01
447 449 1.089920 AGTGTGCATCGCCAGAAATC 58.910 50.000 0.00 0.00 0.00 2.17
448 450 1.470098 GAAGTGTGCATCGCCAGAAAT 59.530 47.619 0.00 0.00 0.00 2.17
449 451 0.874390 GAAGTGTGCATCGCCAGAAA 59.126 50.000 0.00 0.00 0.00 2.52
450 452 0.250252 TGAAGTGTGCATCGCCAGAA 60.250 50.000 0.00 0.00 0.00 3.02
451 453 0.036105 ATGAAGTGTGCATCGCCAGA 60.036 50.000 0.00 0.00 0.00 3.86
452 454 1.655484 TATGAAGTGTGCATCGCCAG 58.345 50.000 0.00 0.00 0.00 4.85
453 455 2.106477 TTATGAAGTGTGCATCGCCA 57.894 45.000 0.00 0.00 0.00 5.69
454 456 3.313526 AGATTTATGAAGTGTGCATCGCC 59.686 43.478 0.00 0.00 0.00 5.54
455 457 4.034394 TGAGATTTATGAAGTGTGCATCGC 59.966 41.667 0.00 0.00 0.00 4.58
456 458 5.723492 TGAGATTTATGAAGTGTGCATCG 57.277 39.130 0.00 0.00 0.00 3.84
457 459 7.185453 GTCTTGAGATTTATGAAGTGTGCATC 58.815 38.462 0.00 0.00 0.00 3.91
458 460 6.183360 CGTCTTGAGATTTATGAAGTGTGCAT 60.183 38.462 0.00 0.00 0.00 3.96
459 461 5.120674 CGTCTTGAGATTTATGAAGTGTGCA 59.879 40.000 0.00 0.00 0.00 4.57
460 462 5.348724 TCGTCTTGAGATTTATGAAGTGTGC 59.651 40.000 0.00 0.00 0.00 4.57
461 463 6.951256 TCGTCTTGAGATTTATGAAGTGTG 57.049 37.500 0.00 0.00 0.00 3.82
462 464 9.254133 CATATCGTCTTGAGATTTATGAAGTGT 57.746 33.333 0.00 0.00 0.00 3.55
463 465 8.219769 GCATATCGTCTTGAGATTTATGAAGTG 58.780 37.037 9.85 0.00 0.00 3.16
464 466 7.386299 GGCATATCGTCTTGAGATTTATGAAGT 59.614 37.037 9.85 0.00 0.00 3.01
465 467 7.411264 CGGCATATCGTCTTGAGATTTATGAAG 60.411 40.741 9.85 0.00 0.00 3.02
466 468 6.366061 CGGCATATCGTCTTGAGATTTATGAA 59.634 38.462 9.85 0.00 0.00 2.57
467 469 5.863935 CGGCATATCGTCTTGAGATTTATGA 59.136 40.000 9.85 0.00 0.00 2.15
468 470 5.445142 GCGGCATATCGTCTTGAGATTTATG 60.445 44.000 0.00 0.00 0.00 1.90
469 471 4.627467 GCGGCATATCGTCTTGAGATTTAT 59.373 41.667 0.00 0.00 0.00 1.40
470 472 3.987868 GCGGCATATCGTCTTGAGATTTA 59.012 43.478 0.00 0.00 0.00 1.40
471 473 2.802816 GCGGCATATCGTCTTGAGATTT 59.197 45.455 0.00 0.00 0.00 2.17
472 474 2.408050 GCGGCATATCGTCTTGAGATT 58.592 47.619 0.00 0.00 0.00 2.40
473 475 1.337260 GGCGGCATATCGTCTTGAGAT 60.337 52.381 3.07 0.00 0.00 2.75
474 476 0.032130 GGCGGCATATCGTCTTGAGA 59.968 55.000 3.07 0.00 0.00 3.27
475 477 0.032678 AGGCGGCATATCGTCTTGAG 59.967 55.000 13.08 0.00 42.95 3.02
476 478 0.032130 GAGGCGGCATATCGTCTTGA 59.968 55.000 13.08 0.00 45.69 3.02
477 479 0.249447 TGAGGCGGCATATCGTCTTG 60.249 55.000 13.08 0.00 45.69 3.02
478 480 0.032678 CTGAGGCGGCATATCGTCTT 59.967 55.000 13.08 0.00 45.69 3.01
480 482 0.664767 GACTGAGGCGGCATATCGTC 60.665 60.000 13.08 8.53 34.63 4.20
481 483 1.109920 AGACTGAGGCGGCATATCGT 61.110 55.000 13.08 2.98 0.00 3.73
482 484 0.387878 GAGACTGAGGCGGCATATCG 60.388 60.000 13.08 0.00 0.00 2.92
483 485 0.965439 AGAGACTGAGGCGGCATATC 59.035 55.000 13.08 0.00 0.00 1.63
484 486 0.965439 GAGAGACTGAGGCGGCATAT 59.035 55.000 13.08 0.00 0.00 1.78
485 487 1.448119 CGAGAGACTGAGGCGGCATA 61.448 60.000 13.08 0.00 0.00 3.14
486 488 2.780094 CGAGAGACTGAGGCGGCAT 61.780 63.158 13.08 0.00 0.00 4.40
487 489 3.443925 CGAGAGACTGAGGCGGCA 61.444 66.667 13.08 0.00 0.00 5.69
488 490 4.200283 CCGAGAGACTGAGGCGGC 62.200 72.222 0.00 0.00 35.17 6.53
489 491 2.438614 TCCGAGAGACTGAGGCGG 60.439 66.667 0.00 0.00 43.11 6.13
490 492 2.477176 CCTCCGAGAGACTGAGGCG 61.477 68.421 0.00 0.00 41.62 5.52
491 493 3.520402 CCTCCGAGAGACTGAGGC 58.480 66.667 0.00 0.00 41.62 4.70
493 495 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
494 496 0.251386 AAGCACCTCCGAGAGACTGA 60.251 55.000 0.00 0.00 0.00 3.41
495 497 1.464734 TAAGCACCTCCGAGAGACTG 58.535 55.000 0.00 0.22 0.00 3.51
496 498 2.445682 ATAAGCACCTCCGAGAGACT 57.554 50.000 0.00 0.00 0.00 3.24
497 499 3.478509 TCTATAAGCACCTCCGAGAGAC 58.521 50.000 0.00 0.00 0.00 3.36
498 500 3.859061 TCTATAAGCACCTCCGAGAGA 57.141 47.619 0.00 0.00 0.00 3.10
499 501 3.823873 ACATCTATAAGCACCTCCGAGAG 59.176 47.826 0.00 0.00 0.00 3.20
500 502 3.570125 CACATCTATAAGCACCTCCGAGA 59.430 47.826 0.00 0.00 0.00 4.04
501 503 3.858877 GCACATCTATAAGCACCTCCGAG 60.859 52.174 0.00 0.00 0.00 4.63
502 504 2.035961 GCACATCTATAAGCACCTCCGA 59.964 50.000 0.00 0.00 0.00 4.55
503 505 2.224042 TGCACATCTATAAGCACCTCCG 60.224 50.000 0.00 0.00 31.05 4.63
504 506 3.475566 TGCACATCTATAAGCACCTCC 57.524 47.619 0.00 0.00 31.05 4.30
505 507 4.212847 CACATGCACATCTATAAGCACCTC 59.787 45.833 0.00 0.00 40.14 3.85
506 508 4.132336 CACATGCACATCTATAAGCACCT 58.868 43.478 0.00 0.00 40.14 4.00
507 509 3.879295 ACACATGCACATCTATAAGCACC 59.121 43.478 0.00 0.00 40.14 5.01
508 510 4.840911 CACACATGCACATCTATAAGCAC 58.159 43.478 0.00 0.00 40.14 4.40
523 525 5.219343 TCATCCTTATAGAGGCACACATG 57.781 43.478 0.00 0.00 45.87 3.21
524 526 4.904251 ACTCATCCTTATAGAGGCACACAT 59.096 41.667 0.00 0.00 45.87 3.21
525 527 4.290093 ACTCATCCTTATAGAGGCACACA 58.710 43.478 0.00 0.00 45.87 3.72
526 528 4.946478 ACTCATCCTTATAGAGGCACAC 57.054 45.455 0.00 0.00 45.87 3.82
527 529 7.147828 GCATATACTCATCCTTATAGAGGCACA 60.148 40.741 0.00 0.00 45.87 4.57
528 530 7.206687 GCATATACTCATCCTTATAGAGGCAC 58.793 42.308 0.00 0.00 45.87 5.01
529 531 6.039829 CGCATATACTCATCCTTATAGAGGCA 59.960 42.308 0.00 0.00 45.87 4.75
530 532 6.442952 CGCATATACTCATCCTTATAGAGGC 58.557 44.000 0.00 0.00 45.87 4.70
532 534 6.139435 CGCGCATATACTCATCCTTATAGAG 58.861 44.000 8.75 0.00 35.56 2.43
533 535 5.589050 ACGCGCATATACTCATCCTTATAGA 59.411 40.000 5.73 0.00 0.00 1.98
534 536 5.822278 ACGCGCATATACTCATCCTTATAG 58.178 41.667 5.73 0.00 0.00 1.31
535 537 5.830000 ACGCGCATATACTCATCCTTATA 57.170 39.130 5.73 0.00 0.00 0.98
536 538 4.720649 ACGCGCATATACTCATCCTTAT 57.279 40.909 5.73 0.00 0.00 1.73
537 539 5.124936 ACATACGCGCATATACTCATCCTTA 59.875 40.000 5.73 0.00 0.00 2.69
548 550 2.923655 GCACTCATACATACGCGCATAT 59.076 45.455 5.73 0.00 0.00 1.78
555 557 2.193447 ACGCAAGCACTCATACATACG 58.807 47.619 0.00 0.00 45.62 3.06
562 564 1.273606 AGTACAGACGCAAGCACTCAT 59.726 47.619 0.00 0.00 45.62 2.90
567 569 2.232756 TTTCAGTACAGACGCAAGCA 57.767 45.000 0.00 0.00 45.62 3.91
586 588 7.661847 CCAATTCAGAGTACTACCAGACTTTTT 59.338 37.037 0.00 0.00 0.00 1.94
587 589 7.016268 TCCAATTCAGAGTACTACCAGACTTTT 59.984 37.037 0.00 0.00 0.00 2.27
591 593 5.916661 TCCAATTCAGAGTACTACCAGAC 57.083 43.478 0.00 0.00 0.00 3.51
592 594 5.958380 ACATCCAATTCAGAGTACTACCAGA 59.042 40.000 0.00 0.00 0.00 3.86
593 595 6.045318 CACATCCAATTCAGAGTACTACCAG 58.955 44.000 0.00 0.00 0.00 4.00
595 597 5.978814 ACACATCCAATTCAGAGTACTACC 58.021 41.667 0.00 0.00 0.00 3.18
596 598 8.804688 GATACACATCCAATTCAGAGTACTAC 57.195 38.462 0.00 0.00 0.00 2.73
611 613 0.660595 CGCGAGTCGGATACACATCC 60.661 60.000 15.52 0.00 46.51 3.51
612 614 0.306840 TCGCGAGTCGGATACACATC 59.693 55.000 15.52 0.00 39.05 3.06
613 615 0.308068 CTCGCGAGTCGGATACACAT 59.692 55.000 27.79 0.00 39.05 3.21
641 650 3.000727 CAGTTCAGTTGGGTACGGATTC 58.999 50.000 0.00 0.00 30.90 2.52
654 663 1.412079 TTTTGGGCATGCAGTTCAGT 58.588 45.000 21.36 0.00 0.00 3.41
655 664 2.613691 GATTTTGGGCATGCAGTTCAG 58.386 47.619 21.36 0.00 0.00 3.02
656 665 1.275856 GGATTTTGGGCATGCAGTTCA 59.724 47.619 21.36 9.00 0.00 3.18
657 666 1.405933 GGGATTTTGGGCATGCAGTTC 60.406 52.381 21.36 6.33 0.00 3.01
658 667 0.614812 GGGATTTTGGGCATGCAGTT 59.385 50.000 21.36 0.00 0.00 3.16
830 843 3.126225 GTCGACCGGCTCTCGTCT 61.126 66.667 12.10 0.00 37.11 4.18
1033 1063 3.827898 GTCGAGGAGGTGGGCGAG 61.828 72.222 0.00 0.00 33.00 5.03
1038 1068 1.481056 AACCTTGGTCGAGGAGGTGG 61.481 60.000 13.34 2.16 42.78 4.61
1040 1070 1.558233 CTAACCTTGGTCGAGGAGGT 58.442 55.000 11.04 8.16 45.42 3.85
1063 1093 4.035102 GGGTGAAGGGCCGCTCTT 62.035 66.667 4.79 4.79 0.00 2.85
1068 1098 3.330720 AGAAGGGGTGAAGGGCCG 61.331 66.667 0.00 0.00 0.00 6.13
1069 1099 1.501654 AAGAGAAGGGGTGAAGGGCC 61.502 60.000 0.00 0.00 0.00 5.80
1070 1100 0.034960 GAAGAGAAGGGGTGAAGGGC 60.035 60.000 0.00 0.00 0.00 5.19
1071 1101 1.557371 GAGAAGAGAAGGGGTGAAGGG 59.443 57.143 0.00 0.00 0.00 3.95
1072 1102 1.557371 GGAGAAGAGAAGGGGTGAAGG 59.443 57.143 0.00 0.00 0.00 3.46
1073 1103 1.557371 GGGAGAAGAGAAGGGGTGAAG 59.443 57.143 0.00 0.00 0.00 3.02
1074 1104 1.657804 GGGAGAAGAGAAGGGGTGAA 58.342 55.000 0.00 0.00 0.00 3.18
1075 1105 0.252742 GGGGAGAAGAGAAGGGGTGA 60.253 60.000 0.00 0.00 0.00 4.02
1076 1106 1.275421 GGGGGAGAAGAGAAGGGGTG 61.275 65.000 0.00 0.00 0.00 4.61
1077 1107 1.083141 GGGGGAGAAGAGAAGGGGT 59.917 63.158 0.00 0.00 0.00 4.95
1078 1108 2.066999 CGGGGGAGAAGAGAAGGGG 61.067 68.421 0.00 0.00 0.00 4.79
1079 1109 2.066999 CCGGGGGAGAAGAGAAGGG 61.067 68.421 0.00 0.00 0.00 3.95
1080 1110 1.306226 ACCGGGGGAGAAGAGAAGG 60.306 63.158 6.32 0.00 0.00 3.46
1081 1111 1.331399 GGACCGGGGGAGAAGAGAAG 61.331 65.000 6.32 0.00 0.00 2.85
1082 1112 1.305887 GGACCGGGGGAGAAGAGAA 60.306 63.158 6.32 0.00 0.00 2.87
1083 1113 1.812113 AAGGACCGGGGGAGAAGAGA 61.812 60.000 6.32 0.00 0.00 3.10
1084 1114 0.032416 TAAGGACCGGGGGAGAAGAG 60.032 60.000 6.32 0.00 0.00 2.85
1085 1115 0.325016 GTAAGGACCGGGGGAGAAGA 60.325 60.000 6.32 0.00 0.00 2.87
1086 1116 0.616679 TGTAAGGACCGGGGGAGAAG 60.617 60.000 6.32 0.00 0.00 2.85
1087 1117 0.043637 ATGTAAGGACCGGGGGAGAA 59.956 55.000 6.32 0.00 0.00 2.87
1088 1118 0.043637 AATGTAAGGACCGGGGGAGA 59.956 55.000 6.32 0.00 0.00 3.71
1089 1119 0.916809 AAATGTAAGGACCGGGGGAG 59.083 55.000 6.32 0.00 0.00 4.30
1090 1120 0.913924 GAAATGTAAGGACCGGGGGA 59.086 55.000 6.32 0.00 0.00 4.81
1091 1121 0.106868 GGAAATGTAAGGACCGGGGG 60.107 60.000 6.32 0.00 0.00 5.40
1092 1122 0.621609 TGGAAATGTAAGGACCGGGG 59.378 55.000 6.32 0.00 0.00 5.73
1093 1123 1.746470 GTGGAAATGTAAGGACCGGG 58.254 55.000 6.32 0.00 0.00 5.73
1094 1124 1.338389 ACGTGGAAATGTAAGGACCGG 60.338 52.381 0.00 0.00 0.00 5.28
1095 1125 2.088950 ACGTGGAAATGTAAGGACCG 57.911 50.000 0.00 0.00 0.00 4.79
1096 1126 3.120442 CGAAACGTGGAAATGTAAGGACC 60.120 47.826 0.00 0.00 0.00 4.46
1161 1444 1.241165 CACAAGCCAGTCAGCATTCA 58.759 50.000 0.00 0.00 34.23 2.57
1162 1445 0.109412 GCACAAGCCAGTCAGCATTC 60.109 55.000 0.00 0.00 34.23 2.67
1163 1446 1.962144 GCACAAGCCAGTCAGCATT 59.038 52.632 0.00 0.00 34.23 3.56
1164 1447 3.677527 GCACAAGCCAGTCAGCAT 58.322 55.556 0.00 0.00 34.23 3.79
1174 1457 0.595095 CCAGAACAAGAGGCACAAGC 59.405 55.000 0.00 0.00 41.10 4.01
1218 1501 2.930682 GCATACCTGGAACGTCTTCTTC 59.069 50.000 0.00 0.00 0.00 2.87
1309 1592 5.707242 TTGTCTACACTCTACAGTCCAAG 57.293 43.478 0.00 0.00 0.00 3.61
1317 1600 8.512956 TGAACTAAGTGATTGTCTACACTCTAC 58.487 37.037 0.00 0.55 44.94 2.59
1322 1605 6.159988 AGCTGAACTAAGTGATTGTCTACAC 58.840 40.000 0.00 0.00 37.30 2.90
1323 1606 6.015434 TGAGCTGAACTAAGTGATTGTCTACA 60.015 38.462 0.00 0.00 0.00 2.74
1324 1607 6.390721 TGAGCTGAACTAAGTGATTGTCTAC 58.609 40.000 0.00 0.00 0.00 2.59
1325 1608 6.434340 TCTGAGCTGAACTAAGTGATTGTCTA 59.566 38.462 0.00 0.00 0.00 2.59
1326 1609 5.244851 TCTGAGCTGAACTAAGTGATTGTCT 59.755 40.000 0.00 0.00 0.00 3.41
1327 1610 5.473931 TCTGAGCTGAACTAAGTGATTGTC 58.526 41.667 0.00 0.00 0.00 3.18
1328 1611 5.474578 TCTGAGCTGAACTAAGTGATTGT 57.525 39.130 0.00 0.00 0.00 2.71
1350 1633 1.611673 CGAGATTGGGTTTGCAGACCT 60.612 52.381 24.35 6.36 39.71 3.85
1407 1690 2.286184 CCGGCGATAATGAAAGTTTCCG 60.286 50.000 9.30 9.54 0.00 4.30
1424 1707 0.607489 ATTATGATGCAGAGGCCGGC 60.607 55.000 21.18 21.18 40.13 6.13
1550 1834 9.813826 TGGAGATTAGATAGTGACTGATATCAA 57.186 33.333 6.90 0.00 31.97 2.57
1551 1835 9.813826 TTGGAGATTAGATAGTGACTGATATCA 57.186 33.333 5.07 5.07 31.97 2.15
1565 1849 3.181456 GCCAGCAGACTTGGAGATTAGAT 60.181 47.826 0.00 0.00 37.96 1.98
1593 1877 3.699067 CTCTGTTCCAACTTGCAAACAG 58.301 45.455 16.96 16.96 46.29 3.16
1603 1888 5.689383 TCAACTAAATGCTCTGTTCCAAC 57.311 39.130 0.00 0.00 0.00 3.77
1734 2019 2.023320 GCAATAGCGCGGCAACTC 59.977 61.111 8.83 0.00 0.00 3.01
1949 2234 1.700042 GGAGACTCGATGCCCCCAAT 61.700 60.000 0.00 0.00 0.00 3.16
1985 2270 7.755373 GCAAGGAAATTTTAGTGAGGAATACAC 59.245 37.037 0.00 0.00 38.38 2.90
2124 2409 6.016777 GCAATTTTCTGGGATAGGATGTGTAG 60.017 42.308 0.00 0.00 0.00 2.74
2734 3019 7.114670 CAGATGCTAGTTCAATCATAGAAGACG 59.885 40.741 0.00 0.00 0.00 4.18
2811 3096 6.162079 CGATAATAGCAGGATCACATCAAGT 58.838 40.000 0.00 0.00 0.00 3.16
2897 3183 9.384682 GCTTAATTTGAAATCCAAAACATTGTG 57.615 29.630 0.00 0.00 46.64 3.33
2981 3269 7.170320 CAGCTGGATGCATTAATAAAATTGTCC 59.830 37.037 5.57 0.00 45.94 4.02
3049 3339 4.397420 TGTTTGCATCCTCAACACTATGT 58.603 39.130 0.00 0.00 0.00 2.29
3092 3382 6.609616 TCTTTTTGGCCTCTTTCTTTTCCTTA 59.390 34.615 3.32 0.00 0.00 2.69
3101 3391 3.733443 TTGCTCTTTTTGGCCTCTTTC 57.267 42.857 3.32 0.00 0.00 2.62
3132 3422 4.522789 GCAGGTGGTATTTTCTTTGAAGGA 59.477 41.667 0.00 0.00 0.00 3.36
3234 3530 6.054941 CCAATATGGCTGTATGTAACACTCA 58.945 40.000 0.00 0.00 33.45 3.41
3249 3545 5.710567 GGTTTATAGTTCTCCCCAATATGGC 59.289 44.000 0.00 0.00 35.79 4.40
3402 3698 3.131933 GCACTAGTGTCTCTGATGGACAT 59.868 47.826 23.44 0.00 44.04 3.06
3404 3700 2.478709 CGCACTAGTGTCTCTGATGGAC 60.479 54.545 23.44 2.04 0.00 4.02
3409 3705 1.200252 GAAGCGCACTAGTGTCTCTGA 59.800 52.381 23.44 0.00 0.00 3.27
3488 3784 6.485313 CAGCATTAATCACGTAGGGGAAAATA 59.515 38.462 0.00 0.00 0.00 1.40
3742 4038 5.314529 TCGATCTATACAAGTCTACTGGGG 58.685 45.833 0.00 0.00 0.00 4.96
3905 4202 2.063266 GTCGAACGTTGCATGTTAGGA 58.937 47.619 5.00 3.89 0.00 2.94
3991 4288 3.423539 AGCAGTATCAAAAGACAGCCA 57.576 42.857 0.00 0.00 30.16 4.75
4039 4336 5.854010 TCTTATGCTATCCGTCAGAAACT 57.146 39.130 0.00 0.00 0.00 2.66
4242 4547 6.465084 ACCAAGGTAGTGTTTTCATAGAGAC 58.535 40.000 0.00 0.00 0.00 3.36
4267 4575 8.109634 ACTTGTATCTCATAAAGACCCACAATT 58.890 33.333 0.00 0.00 36.65 2.32
4356 4664 2.486907 CCCTGGCAAATGCAAAGGAAAA 60.487 45.455 21.47 0.00 44.51 2.29
4367 4675 3.944250 CTGGGACGCCCTGGCAAAT 62.944 63.158 14.76 0.00 45.70 2.32
4387 4695 1.205893 TGTCCAACACCAAAGGCAAAC 59.794 47.619 0.00 0.00 0.00 2.93
4451 4759 7.267128 AGAAAGTGAAAACATCTGATTTGCAA 58.733 30.769 0.00 0.00 0.00 4.08
4459 4767 4.823989 ACAGGGAGAAAGTGAAAACATCTG 59.176 41.667 0.00 0.00 0.00 2.90
4769 5081 4.616835 GCAAGGAAAGCAGGTGTTATTCAG 60.617 45.833 0.00 0.00 0.00 3.02
4808 5120 3.060895 GTCTAAACTTCTTCGTCGCCATG 59.939 47.826 0.00 0.00 0.00 3.66
5206 5519 6.719370 ACTGGTACAATGAAAAATCTTAGGCA 59.281 34.615 0.00 0.00 38.70 4.75
5326 5639 2.217750 CCACGACCACTCAAAACATGA 58.782 47.619 0.00 0.00 36.38 3.07
5526 5839 3.077359 CGAAGCTTTTGATGAACCCTCT 58.923 45.455 0.00 0.00 0.00 3.69
5661 5974 1.954382 TCTTGATCGGGGATGTCTACG 59.046 52.381 0.00 0.00 0.00 3.51
5676 5989 2.577059 GCGTCATCGGGGTCTTGA 59.423 61.111 0.00 0.00 37.56 3.02
5794 6115 0.879839 CACACATCTGTCGTGCCACA 60.880 55.000 0.00 0.00 37.93 4.17
5903 6224 3.306364 GCTTCTTCTACCTCAGTCTTGCA 60.306 47.826 0.00 0.00 0.00 4.08
5986 6307 5.866633 GCTTAGAGGACATACATATGACAGC 59.133 44.000 10.38 1.49 37.15 4.40
6117 6438 2.270986 GCACAGGAACCAAGCTGGG 61.271 63.158 5.25 5.25 43.37 4.45
6201 6536 6.655848 TGTAACTGTGTTTGTCCTTTGTAAGT 59.344 34.615 0.00 0.00 0.00 2.24
6202 6537 6.964934 GTGTAACTGTGTTTGTCCTTTGTAAG 59.035 38.462 0.00 0.00 0.00 2.34
6203 6538 6.430308 TGTGTAACTGTGTTTGTCCTTTGTAA 59.570 34.615 0.00 0.00 38.04 2.41
6204 6539 5.938710 TGTGTAACTGTGTTTGTCCTTTGTA 59.061 36.000 0.00 0.00 38.04 2.41
6205 6540 4.762765 TGTGTAACTGTGTTTGTCCTTTGT 59.237 37.500 0.00 0.00 38.04 2.83
6208 6543 6.524101 AATTGTGTAACTGTGTTTGTCCTT 57.476 33.333 0.00 0.00 38.04 3.36
6305 6642 5.069648 TCTCACAGAAGCTTACATCATAGGG 59.930 44.000 0.00 0.00 0.00 3.53
6436 6773 3.319198 ATTGACCTGGCCGTCGGT 61.319 61.111 13.94 10.61 35.40 4.69
6688 7025 0.324614 TCATGATGTTCACCTGCCGT 59.675 50.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.