Multiple sequence alignment - TraesCS7A01G378100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G378100 chr7A 100.000 4539 0 0 1 4539 553382019 553386557 0.000000e+00 8383.0
1 TraesCS7A01G378100 chr7B 94.587 2494 93 20 441 2893 512749705 512752197 0.000000e+00 3819.0
2 TraesCS7A01G378100 chr7B 82.824 1211 121 56 3386 4539 512752727 512753907 0.000000e+00 1003.0
3 TraesCS7A01G378100 chr7B 93.376 468 25 5 2920 3381 512752190 512752657 0.000000e+00 688.0
4 TraesCS7A01G378100 chr7B 90.831 349 12 6 77 410 512749019 512749362 2.490000e-122 449.0
5 TraesCS7A01G378100 chr7B 94.286 35 2 0 2092 2126 183292141 183292107 2.000000e-03 54.7
6 TraesCS7A01G378100 chr7D 95.479 2256 80 13 646 2879 485095526 485097781 0.000000e+00 3581.0
7 TraesCS7A01G378100 chr7D 90.895 626 28 10 2 612 485094913 485095524 0.000000e+00 813.0
8 TraesCS7A01G378100 chr7D 83.360 625 77 15 3386 3996 485098477 485099088 1.850000e-153 553.0
9 TraesCS7A01G378100 chr7D 86.994 469 40 8 2922 3381 485097791 485098247 4.050000e-140 508.0
10 TraesCS7A01G378100 chr7D 87.958 382 28 11 4165 4539 485099395 485099765 6.970000e-118 435.0
11 TraesCS7A01G378100 chr7D 84.810 158 19 3 4000 4156 485099170 485099323 2.190000e-33 154.0
12 TraesCS7A01G378100 chr7D 100.000 35 0 0 2890 2924 616222775 616222809 1.050000e-06 65.8
13 TraesCS7A01G378100 chr3A 82.051 117 17 3 2048 2164 647054754 647054866 3.740000e-16 97.1
14 TraesCS7A01G378100 chr3A 95.122 41 2 0 2890 2930 422617261 422617301 1.050000e-06 65.8
15 TraesCS7A01G378100 chr3B 81.982 111 14 5 2055 2164 174726250 174726355 6.250000e-14 89.8
16 TraesCS7A01G378100 chr2A 93.478 46 3 0 2890 2935 57166901 57166856 8.150000e-08 69.4
17 TraesCS7A01G378100 chr3D 100.000 35 0 0 2890 2924 355905449 355905415 1.050000e-06 65.8
18 TraesCS7A01G378100 chr6D 100.000 34 0 0 2890 2923 101722639 101722606 3.790000e-06 63.9
19 TraesCS7A01G378100 chr5D 97.297 37 1 0 2890 2926 398810933 398810897 3.790000e-06 63.9
20 TraesCS7A01G378100 chr2D 95.000 40 2 0 2890 2929 564092161 564092200 3.790000e-06 63.9
21 TraesCS7A01G378100 chr2D 88.636 44 5 0 398 441 381527679 381527722 2.000000e-03 54.7
22 TraesCS7A01G378100 chr1D 97.297 37 1 0 2890 2926 467238003 467237967 3.790000e-06 63.9
23 TraesCS7A01G378100 chr1B 97.368 38 0 1 2893 2929 1798537 1798574 3.790000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G378100 chr7A 553382019 553386557 4538 False 8383.000000 8383 100.000000 1 4539 1 chr7A.!!$F1 4538
1 TraesCS7A01G378100 chr7B 512749019 512753907 4888 False 1489.750000 3819 90.404500 77 4539 4 chr7B.!!$F1 4462
2 TraesCS7A01G378100 chr7D 485094913 485099765 4852 False 1007.333333 3581 88.249333 2 4539 6 chr7D.!!$F2 4537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.172352 GAGGCGACCACAGAAGAGAG 59.828 60.0 0.00 0.00 0.00 3.20 F
1252 1605 0.517316 GCTTGCTGTTTACCAGGTCG 59.483 55.0 0.00 0.00 41.81 4.79 F
1360 1713 0.687354 GTGGTTGAGCTCCTCAGGAA 59.313 55.0 12.15 0.00 41.75 3.36 F
1850 2203 1.507140 TAAGTGATCCGGGGCAGATT 58.493 50.0 0.00 1.20 0.00 2.40 F
3406 4030 1.075542 TCTTGCTTACATTCGGCGTG 58.924 50.0 6.85 0.35 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1699 0.115152 TGGACTTCCTGAGGAGCTCA 59.885 55.0 17.19 0.0 38.25 4.26 R
2708 3094 0.762418 TGTGTGAATGACGGAACCCT 59.238 50.0 0.00 0.0 0.00 4.34 R
2933 3319 2.169832 TTACTGCTCAGCCTGTGTTC 57.830 50.0 0.00 0.0 0.00 3.18 R
3481 4105 0.105760 AGTGTGCAATCCAACCCCAA 60.106 50.0 0.00 0.0 0.00 4.12 R
4413 5207 0.104304 GGCGGCGAGAGAATAAAGGA 59.896 55.0 12.98 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 6.016777 GCATAATTGACCGATCCTCAGAAATT 60.017 38.462 0.00 0.00 0.00 1.82
79 80 2.270352 AATTTGAGGCGACCACAGAA 57.730 45.000 0.00 0.00 0.00 3.02
84 85 0.172352 GAGGCGACCACAGAAGAGAG 59.828 60.000 0.00 0.00 0.00 3.20
88 89 1.203523 GCGACCACAGAAGAGAGATGT 59.796 52.381 0.00 0.00 0.00 3.06
270 279 4.442192 CCGTTTCAAAAATCAAACCTCCCA 60.442 41.667 0.00 0.00 0.00 4.37
360 380 4.112341 CGTGACCCTCCGTCCGTC 62.112 72.222 0.00 0.00 41.18 4.79
361 381 3.756727 GTGACCCTCCGTCCGTCC 61.757 72.222 0.00 0.00 41.18 4.79
407 427 1.810030 GTCGCCAATCCACCTCGTC 60.810 63.158 0.00 0.00 0.00 4.20
545 879 1.379044 GCCACTTGCACTGGGCTAT 60.379 57.895 13.05 0.00 45.15 2.97
667 1006 2.898705 CCGAGATTCCTTCTTGTCCTG 58.101 52.381 0.00 0.00 34.41 3.86
669 1008 2.419297 CGAGATTCCTTCTTGTCCTGGG 60.419 54.545 0.00 0.00 33.74 4.45
1135 1487 6.712241 ATTCAGTGTTGTTTGTCTAGATCG 57.288 37.500 0.00 0.00 0.00 3.69
1137 1489 5.220381 TCAGTGTTGTTTGTCTAGATCGTC 58.780 41.667 0.00 0.00 0.00 4.20
1162 1515 8.946085 TCAATTCATACATCAAGTTTACTGTCC 58.054 33.333 0.00 0.00 0.00 4.02
1170 1523 3.709653 TCAAGTTTACTGTCCACCTGAGT 59.290 43.478 0.00 0.00 0.00 3.41
1196 1549 4.373532 CTTTTGCAGCAAAATAACCACG 57.626 40.909 29.19 14.71 41.53 4.94
1211 1564 2.590575 ACGGGCTTTGGTGTCACG 60.591 61.111 0.00 0.00 0.00 4.35
1252 1605 0.517316 GCTTGCTGTTTACCAGGTCG 59.483 55.000 0.00 0.00 41.81 4.79
1259 1612 1.614903 TGTTTACCAGGTCGTCGTCAT 59.385 47.619 0.00 0.00 0.00 3.06
1319 1672 4.667519 AAACTACGGGAGAATAGCGAAT 57.332 40.909 0.00 0.00 0.00 3.34
1346 1699 2.448931 TCCCCGGACAAGGTGGTT 60.449 61.111 0.73 0.00 0.00 3.67
1360 1713 0.687354 GTGGTTGAGCTCCTCAGGAA 59.313 55.000 12.15 0.00 41.75 3.36
1490 1843 3.022607 GCTTTTGCTGCAAATGAGAGT 57.977 42.857 32.42 0.00 43.35 3.24
1676 2029 6.819284 TCTGGATGACAAAATTGAGCTTTTT 58.181 32.000 0.00 0.00 0.00 1.94
1679 2032 7.725251 TGGATGACAAAATTGAGCTTTTTACT 58.275 30.769 0.00 0.00 0.00 2.24
1742 2095 4.828939 TCTGCATGTGTTTTCAAGGAAGAT 59.171 37.500 0.00 0.00 0.00 2.40
1743 2096 4.873817 TGCATGTGTTTTCAAGGAAGATG 58.126 39.130 0.00 0.00 0.00 2.90
1772 2125 2.645838 ATATGAAACCGCTGCTGGAT 57.354 45.000 15.53 3.01 0.00 3.41
1783 2136 2.543445 CGCTGCTGGATTTGTTTTCACA 60.543 45.455 0.00 0.00 0.00 3.58
1834 2187 7.147915 TGCATATCCCTTTTTGGCTTACTTAAG 60.148 37.037 0.00 0.00 36.40 1.85
1850 2203 1.507140 TAAGTGATCCGGGGCAGATT 58.493 50.000 0.00 1.20 0.00 2.40
2361 2722 8.902806 AGTCTTTGTTTTCATTGTATTGTCTCA 58.097 29.630 0.00 0.00 0.00 3.27
2419 2796 9.739276 ATCCACTTTCTCAACATTATGAACTTA 57.261 29.630 0.00 0.00 0.00 2.24
2451 2828 7.928706 AGATTAGAGGTGGATATCAAAAGTTCG 59.071 37.037 4.83 0.00 0.00 3.95
2697 3083 2.430382 ATTCAAGGTCGTGACGCCGT 62.430 55.000 0.00 0.10 0.00 5.68
2716 3102 3.316573 GAGGTCTGCCAGGGTTCCG 62.317 68.421 0.00 0.00 37.19 4.30
2830 3216 3.415212 CCTGTCAGTGTTGTGGATGAAT 58.585 45.455 0.00 0.00 0.00 2.57
2847 3233 4.734398 TGAATGTGTTCTTTGGCAAACT 57.266 36.364 8.93 0.00 35.33 2.66
2879 3265 4.136796 CCAATGTTGTCCAGAGAAGAACA 58.863 43.478 0.00 0.00 33.42 3.18
2881 3267 5.242393 CCAATGTTGTCCAGAGAAGAACATT 59.758 40.000 0.00 0.00 42.54 2.71
2886 3272 7.874940 TGTTGTCCAGAGAAGAACATTAATTG 58.125 34.615 0.00 0.00 0.00 2.32
2887 3273 7.502226 TGTTGTCCAGAGAAGAACATTAATTGT 59.498 33.333 0.00 0.00 41.53 2.71
2888 3274 8.999431 GTTGTCCAGAGAAGAACATTAATTGTA 58.001 33.333 0.00 0.00 37.68 2.41
2889 3275 9.739276 TTGTCCAGAGAAGAACATTAATTGTAT 57.261 29.630 0.00 0.00 37.68 2.29
2916 3302 8.649973 AACGCTCTTATATTTCTTTACTGAGG 57.350 34.615 0.00 0.00 0.00 3.86
2917 3303 7.210873 ACGCTCTTATATTTCTTTACTGAGGG 58.789 38.462 0.00 0.00 37.76 4.30
2918 3304 7.069578 ACGCTCTTATATTTCTTTACTGAGGGA 59.930 37.037 0.00 0.00 36.36 4.20
3001 3398 6.223120 ACAATGACAAGAAATTAACTTGCCC 58.777 36.000 18.80 13.68 45.66 5.36
3042 3439 3.211045 TGCCAATAAGGTCCGAATAAGC 58.789 45.455 0.00 0.00 40.61 3.09
3120 3517 8.332464 CAATTTCATTGCACTAATAAATGCCTG 58.668 33.333 0.00 0.00 41.33 4.85
3155 3552 5.012893 GGATGACTGTCAATCCCTTTCTTT 58.987 41.667 15.31 0.00 0.00 2.52
3263 3660 5.543405 TCCCCTGCAAATAATTTATGGGATG 59.457 40.000 9.35 0.99 34.67 3.51
3267 3664 7.442062 CCCTGCAAATAATTTATGGGATGTTTC 59.558 37.037 3.65 0.00 35.64 2.78
3287 3685 8.391075 TGTTTCAACCAAACTTCCTAGAATAG 57.609 34.615 0.00 0.00 44.35 1.73
3317 3715 8.862085 GCTTCCTGTACTTTATCCTACTAGAAT 58.138 37.037 0.00 0.00 0.00 2.40
3368 3768 3.431207 CCTCGGTTCGGGTATTGTGTAAT 60.431 47.826 0.00 0.00 0.00 1.89
3397 4021 5.227569 TGATCCTGAGTTTCTTGCTTACA 57.772 39.130 0.00 0.00 0.00 2.41
3400 4024 6.372659 TGATCCTGAGTTTCTTGCTTACATTC 59.627 38.462 0.00 0.00 0.00 2.67
3406 4030 1.075542 TCTTGCTTACATTCGGCGTG 58.924 50.000 6.85 0.35 0.00 5.34
3415 4039 2.201732 ACATTCGGCGTGTGATGATAC 58.798 47.619 17.99 0.00 0.00 2.24
3436 4060 8.043113 TGATACCACATCATTATCATAGAAGGC 58.957 37.037 0.00 0.00 29.20 4.35
3453 4077 4.219288 AGAAGGCAACCTGATTTGACATTC 59.781 41.667 0.00 0.00 36.91 2.67
3460 4084 6.309737 GCAACCTGATTTGACATTCTGATTTC 59.690 38.462 0.00 0.00 0.00 2.17
3472 4096 5.302568 ACATTCTGATTTCTGTTTGCAGGAA 59.697 36.000 0.00 0.00 43.76 3.36
3504 4128 2.831526 GGGGTTGGATTGCACACTATTT 59.168 45.455 0.00 0.00 0.00 1.40
3521 4145 3.508845 ATTTGGCTGCGGTTATCCTAT 57.491 42.857 0.00 0.00 0.00 2.57
3532 4156 7.148557 GCTGCGGTTATCCTATCTATTTTCTTC 60.149 40.741 0.00 0.00 0.00 2.87
3550 4174 8.834749 TTTTCTTCTTTTAGCCTTAGAGACTC 57.165 34.615 0.00 0.00 0.00 3.36
3584 4211 4.980573 AGCACATCTGTTAAGGGTACAAA 58.019 39.130 0.00 0.00 0.00 2.83
3585 4212 5.570320 AGCACATCTGTTAAGGGTACAAAT 58.430 37.500 0.00 0.00 0.00 2.32
3586 4213 5.648092 AGCACATCTGTTAAGGGTACAAATC 59.352 40.000 0.00 0.00 0.00 2.17
3588 4215 6.095440 GCACATCTGTTAAGGGTACAAATCAT 59.905 38.462 0.00 0.00 0.00 2.45
3592 4219 8.562892 CATCTGTTAAGGGTACAAATCATGATC 58.437 37.037 9.06 0.00 0.00 2.92
3609 4236 5.131642 TCATGATCAGGAGTTAGAATGCCTT 59.868 40.000 5.84 0.00 0.00 4.35
3628 4259 2.163818 TGCTTGTACTGGGAAACTCG 57.836 50.000 0.00 0.00 0.00 4.18
3636 4267 1.003233 ACTGGGAAACTCGGAATGGAC 59.997 52.381 0.00 0.00 0.00 4.02
3639 4270 2.289565 GGGAAACTCGGAATGGACATC 58.710 52.381 0.00 0.00 0.00 3.06
3640 4271 2.092914 GGGAAACTCGGAATGGACATCT 60.093 50.000 0.00 0.00 0.00 2.90
3641 4272 2.939103 GGAAACTCGGAATGGACATCTG 59.061 50.000 0.00 0.00 0.00 2.90
3658 4289 4.079558 ACATCTGAATAATGGTTCCCTGCT 60.080 41.667 0.00 0.00 0.00 4.24
3676 4316 1.750682 GCTCACCAGTTTGTGTTCCCT 60.751 52.381 0.00 0.00 37.51 4.20
3692 4332 4.909088 TGTTCCCTTCACTCCTTTTACCTA 59.091 41.667 0.00 0.00 0.00 3.08
3696 4336 5.970640 TCCCTTCACTCCTTTTACCTATGAT 59.029 40.000 0.00 0.00 0.00 2.45
3697 4337 6.058183 CCCTTCACTCCTTTTACCTATGATG 58.942 44.000 0.00 0.00 0.00 3.07
3699 4339 7.338710 CCTTCACTCCTTTTACCTATGATGAA 58.661 38.462 0.00 0.00 0.00 2.57
3704 4344 8.792633 CACTCCTTTTACCTATGATGAAAACAA 58.207 33.333 0.00 0.00 0.00 2.83
3705 4345 9.362151 ACTCCTTTTACCTATGATGAAAACAAA 57.638 29.630 0.00 0.00 0.00 2.83
3706 4346 9.626045 CTCCTTTTACCTATGATGAAAACAAAC 57.374 33.333 0.00 0.00 0.00 2.93
3707 4347 9.137459 TCCTTTTACCTATGATGAAAACAAACA 57.863 29.630 0.00 0.00 0.00 2.83
3710 4350 9.703892 TTTTACCTATGATGAAAACAAACATGG 57.296 29.630 0.00 0.00 0.00 3.66
3711 4351 6.916360 ACCTATGATGAAAACAAACATGGT 57.084 33.333 0.00 0.00 0.00 3.55
3712 4352 6.924111 ACCTATGATGAAAACAAACATGGTC 58.076 36.000 0.00 0.00 0.00 4.02
3713 4353 6.071391 ACCTATGATGAAAACAAACATGGTCC 60.071 38.462 0.00 0.00 0.00 4.46
3720 4360 6.279882 TGAAAACAAACATGGTCCTGAATTC 58.720 36.000 0.00 0.00 0.00 2.17
3769 4409 7.393234 AGCATTAAAATTACTGGTGTCAAGCTA 59.607 33.333 0.00 0.00 0.00 3.32
3771 4411 9.341899 CATTAAAATTACTGGTGTCAAGCTAAC 57.658 33.333 0.00 0.00 0.00 2.34
3772 4412 6.952773 AAAATTACTGGTGTCAAGCTAACA 57.047 33.333 0.00 0.00 0.00 2.41
3786 4426 2.040278 AGCTAACAATCCTCTGCAACCA 59.960 45.455 0.00 0.00 0.00 3.67
3793 4433 4.529377 ACAATCCTCTGCAACCAATCAATT 59.471 37.500 0.00 0.00 0.00 2.32
3794 4434 4.996788 ATCCTCTGCAACCAATCAATTC 57.003 40.909 0.00 0.00 0.00 2.17
3806 4446 4.142182 ACCAATCAATTCTTTACCATGCCG 60.142 41.667 0.00 0.00 0.00 5.69
3816 4456 0.251916 TACCATGCCGAGTTCCAAGG 59.748 55.000 0.00 0.00 0.00 3.61
3826 4466 3.763897 CCGAGTTCCAAGGAAAAATGGAT 59.236 43.478 2.55 0.00 44.83 3.41
3835 4475 5.454471 CCAAGGAAAAATGGATTTGGACACA 60.454 40.000 0.00 0.00 39.12 3.72
3871 4513 7.385778 TCTTTTCTTTTCCTTTTTCAGTCGA 57.614 32.000 0.00 0.00 0.00 4.20
3872 4514 7.248437 TCTTTTCTTTTCCTTTTTCAGTCGAC 58.752 34.615 7.70 7.70 0.00 4.20
3873 4515 5.494632 TTCTTTTCCTTTTTCAGTCGACC 57.505 39.130 13.01 0.00 0.00 4.79
3874 4516 4.777463 TCTTTTCCTTTTTCAGTCGACCT 58.223 39.130 13.01 0.00 0.00 3.85
3875 4517 4.574828 TCTTTTCCTTTTTCAGTCGACCTG 59.425 41.667 13.01 10.13 42.97 4.00
3923 4567 3.132646 TGGCAGGATTATGAAACCATTGC 59.867 43.478 0.00 0.00 0.00 3.56
3940 4584 0.469144 TGCTGGTTGTTTCTTCCCCC 60.469 55.000 0.00 0.00 0.00 5.40
3948 4592 4.388485 GTTGTTTCTTCCCCCGTAAGTAA 58.612 43.478 0.00 0.00 0.00 2.24
3949 4593 4.276058 TGTTTCTTCCCCCGTAAGTAAG 57.724 45.455 0.00 0.00 0.00 2.34
3950 4594 3.647590 TGTTTCTTCCCCCGTAAGTAAGT 59.352 43.478 0.00 0.00 0.00 2.24
3952 4596 2.893424 TCTTCCCCCGTAAGTAAGTGT 58.107 47.619 0.00 0.00 0.00 3.55
3960 4604 4.037684 CCCCGTAAGTAAGTGTATCTCAGG 59.962 50.000 0.00 0.00 0.00 3.86
3962 4606 4.280461 CGTAAGTAAGTGTATCTCAGGCG 58.720 47.826 0.00 0.00 0.00 5.52
3996 4640 1.871772 CTCGAGGCACCTGCTTTTG 59.128 57.895 3.91 0.00 41.70 2.44
3997 4641 1.580845 CTCGAGGCACCTGCTTTTGG 61.581 60.000 3.91 0.00 41.70 3.28
4008 4730 4.580580 CACCTGCTTTTGGAACTAGACTTT 59.419 41.667 0.00 0.00 0.00 2.66
4021 4743 7.393796 TGGAACTAGACTTTAGAACCACTAGAG 59.606 40.741 0.00 0.00 38.68 2.43
4022 4744 7.394077 GGAACTAGACTTTAGAACCACTAGAGT 59.606 40.741 0.00 0.00 45.25 3.24
4023 4745 8.709272 AACTAGACTTTAGAACCACTAGAGTT 57.291 34.615 0.00 0.00 43.50 3.01
4024 4746 8.113173 ACTAGACTTTAGAACCACTAGAGTTG 57.887 38.462 0.00 0.00 43.50 3.16
4027 4749 7.210873 AGACTTTAGAACCACTAGAGTTGTTG 58.789 38.462 4.02 0.00 43.50 3.33
4029 4751 8.015185 ACTTTAGAACCACTAGAGTTGTTGTA 57.985 34.615 4.02 2.32 41.67 2.41
4032 4754 9.918630 TTTAGAACCACTAGAGTTGTTGTATAC 57.081 33.333 4.02 0.00 34.57 1.47
4047 4769 9.599322 GTTGTTGTATACTCTGAATTGTGAAAG 57.401 33.333 4.17 0.00 0.00 2.62
4051 4773 9.665719 TTGTATACTCTGAATTGTGAAAGCATA 57.334 29.630 4.17 0.00 0.00 3.14
4104 4827 5.205056 TGGAAACCACAAAACCATACTCTT 58.795 37.500 0.00 0.00 0.00 2.85
4108 4831 5.767816 ACCACAAAACCATACTCTTGAAC 57.232 39.130 0.00 0.00 0.00 3.18
4116 4839 8.863049 CAAAACCATACTCTTGAACAATAATGC 58.137 33.333 0.00 0.00 0.00 3.56
4117 4840 6.699575 ACCATACTCTTGAACAATAATGCC 57.300 37.500 0.00 0.00 0.00 4.40
4236 5027 8.655970 GTGGATTTTACTTCCAATAATTGTTGC 58.344 33.333 9.28 0.00 44.62 4.17
4264 5055 3.328382 TCCTTTTGGATCCACGTGTAG 57.672 47.619 15.91 7.31 45.19 2.74
4279 5070 5.449999 CCACGTGTAGTAAGCATGATGAGTA 60.450 44.000 15.65 0.00 0.00 2.59
4355 5149 7.682865 CGTATCTTAAACAATCGTTCTTCACAC 59.317 37.037 0.00 0.00 32.91 3.82
4374 5168 6.950842 TCACACCATCATCTCTGTAAGAAAT 58.049 36.000 0.00 0.00 46.34 2.17
4378 5172 9.739276 ACACCATCATCTCTGTAAGAAATAAAA 57.261 29.630 0.00 0.00 46.34 1.52
4413 5207 0.322975 CTGCTTCAGTAGTGGGCAGT 59.677 55.000 24.87 0.00 41.59 4.40
4431 5225 1.202428 AGTCCTTTATTCTCTCGCCGC 60.202 52.381 0.00 0.00 0.00 6.53
4488 5287 4.164030 TCTGCAAAGAGTATAATGCCAGGA 59.836 41.667 0.00 0.00 38.00 3.86
4497 5296 7.633789 AGAGTATAATGCCAGGAAGAAAAAGA 58.366 34.615 0.00 0.00 0.00 2.52
4500 5299 7.890655 AGTATAATGCCAGGAAGAAAAAGAAGT 59.109 33.333 0.00 0.00 0.00 3.01
4502 5301 5.966742 ATGCCAGGAAGAAAAAGAAGTAC 57.033 39.130 0.00 0.00 0.00 2.73
4526 5325 2.229792 GACTTTCAGGATGTGCCAACA 58.770 47.619 0.00 0.00 41.58 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.970614 GGTCAATTATGCGATTTTCTTCTTCTT 59.029 33.333 0.00 0.00 0.00 2.52
25 26 6.412072 CGGTCAATTATGCGATTTTCTTCTTC 59.588 38.462 0.00 0.00 0.00 2.87
29 30 5.811399 TCGGTCAATTATGCGATTTTCTT 57.189 34.783 0.00 0.00 0.00 2.52
30 31 5.049405 GGATCGGTCAATTATGCGATTTTCT 60.049 40.000 0.00 0.00 33.68 2.52
31 32 5.049405 AGGATCGGTCAATTATGCGATTTTC 60.049 40.000 0.00 0.00 33.68 2.29
35 36 3.006859 TGAGGATCGGTCAATTATGCGAT 59.993 43.478 0.00 0.00 38.61 4.58
36 37 2.364002 TGAGGATCGGTCAATTATGCGA 59.636 45.455 0.00 0.00 38.61 5.10
37 38 2.733552 CTGAGGATCGGTCAATTATGCG 59.266 50.000 0.00 0.00 38.61 4.73
38 39 3.995199 TCTGAGGATCGGTCAATTATGC 58.005 45.455 0.00 0.00 43.66 3.14
39 40 7.502120 AATTTCTGAGGATCGGTCAATTATG 57.498 36.000 0.00 0.00 43.66 1.90
40 41 7.775093 TCAAATTTCTGAGGATCGGTCAATTAT 59.225 33.333 0.00 0.00 43.66 1.28
41 42 7.109501 TCAAATTTCTGAGGATCGGTCAATTA 58.890 34.615 0.00 0.00 43.66 1.40
43 44 5.500234 TCAAATTTCTGAGGATCGGTCAAT 58.500 37.500 0.00 0.00 43.66 2.57
44 45 4.905429 TCAAATTTCTGAGGATCGGTCAA 58.095 39.130 0.00 0.00 43.66 3.18
63 64 0.318441 CTCTTCTGTGGTCGCCTCAA 59.682 55.000 3.03 0.00 0.00 3.02
79 80 0.814457 GCCTCGTGTCACATCTCTCT 59.186 55.000 3.42 0.00 0.00 3.10
84 85 0.319900 AGTGTGCCTCGTGTCACATC 60.320 55.000 4.55 0.00 43.94 3.06
125 126 1.079503 CTGCTAGTCCTTTTGCGGTC 58.920 55.000 0.00 0.00 0.00 4.79
234 240 0.908180 GAAACGGAAGGGGAGGAGGA 60.908 60.000 0.00 0.00 0.00 3.71
506 840 1.955683 GCCCTTTTCTCCAGGCTAACC 60.956 57.143 0.00 0.00 42.34 2.85
669 1008 4.021925 AGTCCGCCTGAACCCAGC 62.022 66.667 0.00 0.00 39.07 4.85
685 1024 1.533756 CGCAAGAACAACACCAACCAG 60.534 52.381 0.00 0.00 43.02 4.00
1135 1487 9.760660 GACAGTAAACTTGATGTATGAATTGAC 57.239 33.333 0.00 0.00 0.00 3.18
1137 1489 8.729756 TGGACAGTAAACTTGATGTATGAATTG 58.270 33.333 0.00 0.00 0.00 2.32
1162 1515 2.227388 CTGCAAAAGCCTTACTCAGGTG 59.773 50.000 0.00 0.00 46.07 4.00
1183 1536 2.065512 CAAAGCCCGTGGTTATTTTGC 58.934 47.619 0.00 0.00 0.00 3.68
1196 1549 0.818040 AGTTCGTGACACCAAAGCCC 60.818 55.000 0.00 0.00 0.00 5.19
1211 1564 4.555511 GCACCAACAGTCAAATCTCAGTTC 60.556 45.833 0.00 0.00 0.00 3.01
1346 1699 0.115152 TGGACTTCCTGAGGAGCTCA 59.885 55.000 17.19 0.00 38.25 4.26
1360 1713 6.627087 TCTTGACATTCCTTATCTTGGACT 57.373 37.500 0.00 0.00 32.65 3.85
1490 1843 1.737735 CAGCCAGTCAATCGCGACA 60.738 57.895 12.93 0.00 38.43 4.35
1676 2029 3.162147 ACAGCTTCAGAGTGAGGAGTA 57.838 47.619 0.00 0.00 0.00 2.59
1679 2032 3.733337 GAAAACAGCTTCAGAGTGAGGA 58.267 45.455 0.00 0.00 0.00 3.71
1742 2095 3.874543 GCGGTTTCATATACACCATGACA 59.125 43.478 0.00 0.00 32.23 3.58
1743 2096 4.024893 CAGCGGTTTCATATACACCATGAC 60.025 45.833 0.00 0.00 32.23 3.06
1772 2125 3.003275 GTGAGCCGATCTGTGAAAACAAA 59.997 43.478 0.00 0.00 0.00 2.83
1796 2149 7.516198 AAAGGGATATGCATTGACATAGAAC 57.484 36.000 3.54 0.00 36.03 3.01
1834 2187 0.815615 GTCAATCTGCCCCGGATCAC 60.816 60.000 0.73 0.00 0.00 3.06
1850 2203 7.012704 GGCTGAAAGAGAGCATAATTAATGTCA 59.987 37.037 0.00 0.00 38.27 3.58
2053 2406 6.176975 TGTAATTGTAAGTCCTTGCATTCG 57.823 37.500 0.00 0.00 35.24 3.34
2419 2796 7.141758 TGATATCCACCTCTAATCTGCTTTT 57.858 36.000 0.00 0.00 0.00 2.27
2451 2828 4.771590 TGAGTGGCAATTGATGACTTTC 57.228 40.909 10.34 0.00 38.19 2.62
2697 3083 2.224159 GGAACCCTGGCAGACCTCA 61.224 63.158 17.94 0.00 36.63 3.86
2707 3093 1.156736 GTGTGAATGACGGAACCCTG 58.843 55.000 0.00 0.00 0.00 4.45
2708 3094 0.762418 TGTGTGAATGACGGAACCCT 59.238 50.000 0.00 0.00 0.00 4.34
2830 3216 2.451490 TCCAGTTTGCCAAAGAACACA 58.549 42.857 0.00 0.00 0.00 3.72
2847 3233 3.181428 TGGACAACATTGGTACCAATCCA 60.181 43.478 30.46 30.46 43.92 3.41
2890 3276 9.099454 CCTCAGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2891 3277 7.711339 CCCTCAGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2892 3278 7.069578 TCCCTCAGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2893 3279 7.434492 TCCCTCAGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2894 3280 8.425703 ACTCCCTCAGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 31.37 4.09
2904 3290 9.986157 TCTATTTAGTACTCCCTCAGTAAAGAA 57.014 33.333 0.00 0.00 39.44 2.52
2905 3291 9.986157 TTCTATTTAGTACTCCCTCAGTAAAGA 57.014 33.333 0.00 0.00 39.44 2.52
2908 3294 9.986157 TCTTTCTATTTAGTACTCCCTCAGTAA 57.014 33.333 0.00 0.00 39.44 2.24
2909 3295 9.986157 TTCTTTCTATTTAGTACTCCCTCAGTA 57.014 33.333 0.00 0.00 36.43 2.74
2910 3296 8.751242 GTTCTTTCTATTTAGTACTCCCTCAGT 58.249 37.037 0.00 0.00 39.41 3.41
2911 3297 8.750298 TGTTCTTTCTATTTAGTACTCCCTCAG 58.250 37.037 0.00 0.00 0.00 3.35
2912 3298 8.529476 GTGTTCTTTCTATTTAGTACTCCCTCA 58.471 37.037 0.00 0.00 0.00 3.86
2913 3299 8.529476 TGTGTTCTTTCTATTTAGTACTCCCTC 58.471 37.037 0.00 0.00 0.00 4.30
2914 3300 8.431910 TGTGTTCTTTCTATTTAGTACTCCCT 57.568 34.615 0.00 0.00 0.00 4.20
2915 3301 7.764901 CCTGTGTTCTTTCTATTTAGTACTCCC 59.235 40.741 0.00 0.00 0.00 4.30
2916 3302 7.278203 GCCTGTGTTCTTTCTATTTAGTACTCC 59.722 40.741 0.00 0.00 0.00 3.85
2917 3303 8.035984 AGCCTGTGTTCTTTCTATTTAGTACTC 58.964 37.037 0.00 0.00 0.00 2.59
2918 3304 7.819900 CAGCCTGTGTTCTTTCTATTTAGTACT 59.180 37.037 0.00 0.00 0.00 2.73
2933 3319 2.169832 TTACTGCTCAGCCTGTGTTC 57.830 50.000 0.00 0.00 0.00 3.18
3155 3552 7.051623 ACACTCATAACAACAAACTACCTTCA 58.948 34.615 0.00 0.00 0.00 3.02
3263 3660 7.040686 TGCTATTCTAGGAAGTTTGGTTGAAAC 60.041 37.037 0.00 0.00 43.89 2.78
3267 3664 5.355350 CCTGCTATTCTAGGAAGTTTGGTTG 59.645 44.000 0.00 0.00 36.11 3.77
3306 3704 9.778741 CATAAGTGGCAAATTATTCTAGTAGGA 57.221 33.333 0.00 0.00 0.00 2.94
3374 3774 5.809001 TGTAAGCAAGAAACTCAGGATCAT 58.191 37.500 0.00 0.00 0.00 2.45
3376 3776 6.456181 CGAATGTAAGCAAGAAACTCAGGATC 60.456 42.308 0.00 0.00 0.00 3.36
3377 3777 5.352569 CGAATGTAAGCAAGAAACTCAGGAT 59.647 40.000 0.00 0.00 0.00 3.24
3378 3778 4.690748 CGAATGTAAGCAAGAAACTCAGGA 59.309 41.667 0.00 0.00 0.00 3.86
3381 3781 3.188460 GCCGAATGTAAGCAAGAAACTCA 59.812 43.478 0.00 0.00 0.00 3.41
3382 3782 3.725010 CGCCGAATGTAAGCAAGAAACTC 60.725 47.826 0.00 0.00 0.00 3.01
3384 3784 2.095919 ACGCCGAATGTAAGCAAGAAAC 60.096 45.455 0.00 0.00 0.00 2.78
3397 4021 1.138069 TGGTATCATCACACGCCGAAT 59.862 47.619 0.00 0.00 0.00 3.34
3400 4024 0.459411 TGTGGTATCATCACACGCCG 60.459 55.000 0.00 0.00 39.83 6.46
3415 4039 6.072286 GGTTGCCTTCTATGATAATGATGTGG 60.072 42.308 0.00 0.00 0.00 4.17
3426 4050 4.943705 GTCAAATCAGGTTGCCTTCTATGA 59.056 41.667 0.00 0.00 0.00 2.15
3427 4051 4.701651 TGTCAAATCAGGTTGCCTTCTATG 59.298 41.667 0.00 0.00 0.00 2.23
3436 4060 7.541091 CAGAAATCAGAATGTCAAATCAGGTTG 59.459 37.037 0.00 0.00 37.40 3.77
3472 4096 1.978617 CCAACCCCAAGCTCGCATT 60.979 57.895 0.00 0.00 0.00 3.56
3481 4105 0.105760 AGTGTGCAATCCAACCCCAA 60.106 50.000 0.00 0.00 0.00 4.12
3504 4128 1.717032 AGATAGGATAACCGCAGCCA 58.283 50.000 0.00 0.00 41.83 4.75
3532 4156 9.834628 CTATAATCGAGTCTCTAAGGCTAAAAG 57.165 37.037 0.00 0.00 24.78 2.27
3539 4163 9.168451 TGCTATTCTATAATCGAGTCTCTAAGG 57.832 37.037 0.00 0.00 0.00 2.69
3545 4169 8.458052 CAGATGTGCTATTCTATAATCGAGTCT 58.542 37.037 0.00 0.00 0.00 3.24
3584 4211 5.310068 AGGCATTCTAACTCCTGATCATGAT 59.690 40.000 8.25 8.25 0.00 2.45
3585 4212 4.657504 AGGCATTCTAACTCCTGATCATGA 59.342 41.667 0.00 0.00 0.00 3.07
3586 4213 4.970711 AGGCATTCTAACTCCTGATCATG 58.029 43.478 0.00 0.00 0.00 3.07
3588 4215 4.774124 CAAGGCATTCTAACTCCTGATCA 58.226 43.478 0.00 0.00 0.00 2.92
3592 4219 2.996631 AGCAAGGCATTCTAACTCCTG 58.003 47.619 0.00 0.00 0.00 3.86
3609 4236 1.270625 CCGAGTTTCCCAGTACAAGCA 60.271 52.381 0.00 0.00 0.00 3.91
3628 4259 6.015940 GGAACCATTATTCAGATGTCCATTCC 60.016 42.308 0.00 0.00 0.00 3.01
3658 4289 2.025793 TGAAGGGAACACAAACTGGTGA 60.026 45.455 0.00 0.00 41.32 4.02
3676 4316 9.010029 GTTTTCATCATAGGTAAAAGGAGTGAA 57.990 33.333 0.00 0.00 0.00 3.18
3692 4332 5.539574 TCAGGACCATGTTTGTTTTCATCAT 59.460 36.000 0.00 0.00 0.00 2.45
3696 4336 5.867903 ATTCAGGACCATGTTTGTTTTCA 57.132 34.783 0.00 0.00 0.00 2.69
3697 4337 6.515832 AGAATTCAGGACCATGTTTGTTTTC 58.484 36.000 8.44 0.00 0.00 2.29
3699 4339 6.484364 AAGAATTCAGGACCATGTTTGTTT 57.516 33.333 8.44 0.00 0.00 2.83
3704 4344 5.880901 ACAGTAAGAATTCAGGACCATGTT 58.119 37.500 8.44 0.00 0.00 2.71
3705 4345 5.505181 ACAGTAAGAATTCAGGACCATGT 57.495 39.130 8.44 1.69 0.00 3.21
3750 4390 6.952773 TTGTTAGCTTGACACCAGTAATTT 57.047 33.333 0.00 0.00 0.00 1.82
3753 4393 5.001232 GGATTGTTAGCTTGACACCAGTAA 58.999 41.667 0.00 0.00 0.00 2.24
3755 4395 3.073062 AGGATTGTTAGCTTGACACCAGT 59.927 43.478 0.00 0.00 0.00 4.00
3757 4397 3.327757 AGAGGATTGTTAGCTTGACACCA 59.672 43.478 0.00 0.00 0.00 4.17
3758 4398 3.686726 CAGAGGATTGTTAGCTTGACACC 59.313 47.826 0.00 0.00 0.00 4.16
3761 4401 3.338249 TGCAGAGGATTGTTAGCTTGAC 58.662 45.455 0.00 0.00 0.00 3.18
3763 4403 3.119708 GGTTGCAGAGGATTGTTAGCTTG 60.120 47.826 0.00 0.00 0.00 4.01
3769 4409 3.499338 TGATTGGTTGCAGAGGATTGTT 58.501 40.909 0.00 0.00 0.00 2.83
3771 4411 4.730949 ATTGATTGGTTGCAGAGGATTG 57.269 40.909 0.00 0.00 0.00 2.67
3772 4412 5.021458 AGAATTGATTGGTTGCAGAGGATT 58.979 37.500 0.00 0.00 0.00 3.01
3786 4426 4.949856 ACTCGGCATGGTAAAGAATTGATT 59.050 37.500 0.00 0.00 0.00 2.57
3793 4433 1.626321 TGGAACTCGGCATGGTAAAGA 59.374 47.619 0.00 0.00 0.00 2.52
3794 4434 2.107950 TGGAACTCGGCATGGTAAAG 57.892 50.000 0.00 0.00 0.00 1.85
3806 4446 5.934043 CCAAATCCATTTTTCCTTGGAACTC 59.066 40.000 0.98 0.00 44.83 3.01
3816 4456 6.690530 TCTCATGTGTCCAAATCCATTTTTC 58.309 36.000 0.00 0.00 0.00 2.29
3846 4488 7.753580 GTCGACTGAAAAAGGAAAAGAAAAGAA 59.246 33.333 8.70 0.00 0.00 2.52
3872 4514 3.194116 CAGTTCCAATGGAAACCATCAGG 59.806 47.826 17.31 9.19 44.40 3.86
3873 4515 3.367703 GCAGTTCCAATGGAAACCATCAG 60.368 47.826 17.31 2.09 44.40 2.90
3874 4516 2.562298 GCAGTTCCAATGGAAACCATCA 59.438 45.455 17.31 0.00 44.40 3.07
3875 4517 2.094026 GGCAGTTCCAATGGAAACCATC 60.094 50.000 17.31 3.81 44.40 3.51
3880 4522 1.631405 CCTGGCAGTTCCAATGGAAA 58.369 50.000 17.31 0.00 46.01 3.13
3882 4524 1.304381 GCCTGGCAGTTCCAATGGA 60.304 57.895 15.17 0.00 46.01 3.41
3883 4525 1.304713 AGCCTGGCAGTTCCAATGG 60.305 57.895 22.65 0.00 46.01 3.16
3885 4527 1.304713 CCAGCCTGGCAGTTCCAAT 60.305 57.895 22.65 0.00 46.01 3.16
3886 4528 2.115910 CCAGCCTGGCAGTTCCAA 59.884 61.111 22.65 0.00 46.01 3.53
3903 4545 4.365723 CAGCAATGGTTTCATAATCCTGC 58.634 43.478 0.00 0.00 34.22 4.85
3923 4567 0.179001 ACGGGGGAAGAAACAACCAG 60.179 55.000 0.00 0.00 0.00 4.00
3928 4572 3.647590 ACTTACTTACGGGGGAAGAAACA 59.352 43.478 0.00 0.00 0.00 2.83
3940 4584 4.201891 ACGCCTGAGATACACTTACTTACG 60.202 45.833 0.00 0.00 0.00 3.18
3948 4592 4.856664 CGTAATTACGCCTGAGATACACT 58.143 43.478 23.72 0.00 43.14 3.55
3977 4621 1.968540 AAAAGCAGGTGCCTCGAGC 60.969 57.895 6.99 3.23 43.38 5.03
3981 4625 0.315251 GTTCCAAAAGCAGGTGCCTC 59.685 55.000 0.00 0.00 43.38 4.70
3996 4640 7.394077 ACTCTAGTGGTTCTAAAGTCTAGTTCC 59.606 40.741 0.00 0.00 24.42 3.62
3997 4641 8.339344 ACTCTAGTGGTTCTAAAGTCTAGTTC 57.661 38.462 0.00 0.00 24.42 3.01
4008 4730 8.874744 AGTATACAACAACTCTAGTGGTTCTA 57.125 34.615 5.50 0.00 40.03 2.10
4021 4743 9.599322 CTTTCACAATTCAGAGTATACAACAAC 57.401 33.333 5.50 0.00 0.00 3.32
4022 4744 8.289618 GCTTTCACAATTCAGAGTATACAACAA 58.710 33.333 5.50 0.00 0.00 2.83
4023 4745 7.443879 TGCTTTCACAATTCAGAGTATACAACA 59.556 33.333 5.50 0.00 0.00 3.33
4024 4746 7.806690 TGCTTTCACAATTCAGAGTATACAAC 58.193 34.615 5.50 0.00 0.00 3.32
4027 4749 9.534565 TCTATGCTTTCACAATTCAGAGTATAC 57.465 33.333 0.00 0.00 0.00 1.47
4032 4754 9.269453 TCATATCTATGCTTTCACAATTCAGAG 57.731 33.333 0.00 0.00 33.76 3.35
4060 4782 8.812513 TTCCATGATTTCAAGAACAGTATGAT 57.187 30.769 0.00 0.00 39.69 2.45
4063 4785 7.451255 TGGTTTCCATGATTTCAAGAACAGTAT 59.549 33.333 0.00 0.00 0.00 2.12
4064 4786 6.775142 TGGTTTCCATGATTTCAAGAACAGTA 59.225 34.615 0.00 0.00 0.00 2.74
4065 4787 5.598005 TGGTTTCCATGATTTCAAGAACAGT 59.402 36.000 0.00 0.00 0.00 3.55
4074 4797 5.363939 TGGTTTTGTGGTTTCCATGATTTC 58.636 37.500 0.00 0.00 35.28 2.17
4104 4827 6.757237 ACATTGAAAGTGGCATTATTGTTCA 58.243 32.000 0.00 0.00 0.00 3.18
4108 4831 7.599621 TGAAAGACATTGAAAGTGGCATTATTG 59.400 33.333 0.00 0.00 0.00 1.90
4116 4839 6.072286 AGCAGTATGAAAGACATTGAAAGTGG 60.072 38.462 0.00 0.00 39.69 4.00
4117 4840 6.906659 AGCAGTATGAAAGACATTGAAAGTG 58.093 36.000 0.00 0.00 39.69 3.16
4176 4964 2.819608 TCCAGTCATTACCTTTTGCAGC 59.180 45.455 0.00 0.00 0.00 5.25
4211 4999 8.370940 TGCAACAATTATTGGAAGTAAAATCCA 58.629 29.630 9.88 0.00 45.09 3.41
4212 5000 8.655970 GTGCAACAATTATTGGAAGTAAAATCC 58.344 33.333 9.88 0.00 36.32 3.01
4236 5027 4.094887 CGTGGATCCAAAAGGACATAAGTG 59.905 45.833 18.20 0.00 0.00 3.16
4293 5087 5.105752 ACGACTAGACTCATCATGCTTTTC 58.894 41.667 0.00 0.00 0.00 2.29
4374 5168 7.524717 AGCAGGCAGACTTTATTTTCTTTTA 57.475 32.000 0.00 0.00 0.00 1.52
4378 5172 5.072741 TGAAGCAGGCAGACTTTATTTTCT 58.927 37.500 0.00 0.00 0.00 2.52
4379 5173 5.048434 ACTGAAGCAGGCAGACTTTATTTTC 60.048 40.000 7.37 0.00 35.51 2.29
4380 5174 4.829492 ACTGAAGCAGGCAGACTTTATTTT 59.171 37.500 7.37 0.00 35.51 1.82
4383 5177 3.710209 ACTGAAGCAGGCAGACTTTAT 57.290 42.857 7.37 0.00 35.51 1.40
4384 5178 3.578716 ACTACTGAAGCAGGCAGACTTTA 59.421 43.478 7.37 0.00 35.51 1.85
4385 5179 2.370189 ACTACTGAAGCAGGCAGACTTT 59.630 45.455 7.37 0.00 35.51 2.66
4386 5180 1.974236 ACTACTGAAGCAGGCAGACTT 59.026 47.619 7.37 0.00 35.51 3.01
4387 5181 1.274728 CACTACTGAAGCAGGCAGACT 59.725 52.381 7.37 0.00 35.51 3.24
4388 5182 1.674221 CCACTACTGAAGCAGGCAGAC 60.674 57.143 7.37 0.00 35.51 3.51
4390 5184 0.392193 CCCACTACTGAAGCAGGCAG 60.392 60.000 0.00 0.00 35.51 4.85
4391 5185 1.679311 CCCACTACTGAAGCAGGCA 59.321 57.895 0.00 0.00 35.51 4.75
4413 5207 0.104304 GGCGGCGAGAGAATAAAGGA 59.896 55.000 12.98 0.00 0.00 3.36
4431 5225 0.113190 AGTTGCAAGGGGAGAAAGGG 59.887 55.000 0.00 0.00 0.00 3.95
4482 5276 5.644206 CCTAGTACTTCTTTTTCTTCCTGGC 59.356 44.000 0.00 0.00 0.00 4.85
4483 5277 6.874664 GTCCTAGTACTTCTTTTTCTTCCTGG 59.125 42.308 0.00 0.00 0.00 4.45
4488 5287 9.549078 CTGAAAGTCCTAGTACTTCTTTTTCTT 57.451 33.333 0.00 0.00 38.76 2.52
4497 5296 5.337652 GCACATCCTGAAAGTCCTAGTACTT 60.338 44.000 0.00 0.00 41.46 2.24
4500 5299 3.451178 GGCACATCCTGAAAGTCCTAGTA 59.549 47.826 0.00 0.00 0.00 1.82
4502 5301 2.237143 TGGCACATCCTGAAAGTCCTAG 59.763 50.000 0.00 0.00 35.26 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.