Multiple sequence alignment - TraesCS7A01G377900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G377900 | chr7A | 100.000 | 5778 | 0 | 0 | 1 | 5778 | 553363921 | 553369698 | 0.000000e+00 | 10671 |
1 | TraesCS7A01G377900 | chr7D | 95.413 | 4949 | 180 | 26 | 749 | 5665 | 485025248 | 485030181 | 0.000000e+00 | 7838 |
2 | TraesCS7A01G377900 | chr7D | 90.391 | 281 | 16 | 7 | 3 | 274 | 485024607 | 485024885 | 5.500000e-95 | 359 |
3 | TraesCS7A01G377900 | chr7D | 86.853 | 251 | 15 | 9 | 295 | 533 | 485025008 | 485025252 | 1.230000e-66 | 265 |
4 | TraesCS7A01G377900 | chr7B | 89.865 | 3473 | 339 | 11 | 775 | 4240 | 512694818 | 512698284 | 0.000000e+00 | 4451 |
5 | TraesCS7A01G377900 | chr7B | 88.494 | 3268 | 356 | 17 | 978 | 4240 | 512707592 | 512710844 | 0.000000e+00 | 3934 |
6 | TraesCS7A01G377900 | chr7B | 87.328 | 3275 | 378 | 23 | 989 | 4240 | 663120325 | 663117065 | 0.000000e+00 | 3714 |
7 | TraesCS7A01G377900 | chr7B | 92.319 | 1315 | 77 | 9 | 4330 | 5634 | 512698425 | 512699725 | 0.000000e+00 | 1847 |
8 | TraesCS7A01G377900 | chr7B | 92.003 | 1288 | 75 | 14 | 4331 | 5601 | 512710953 | 512712229 | 0.000000e+00 | 1783 |
9 | TraesCS7A01G377900 | chr7B | 83.647 | 691 | 90 | 10 | 4342 | 5016 | 663116698 | 663116015 | 3.800000e-176 | 628 |
10 | TraesCS7A01G377900 | chr7B | 80.382 | 576 | 64 | 13 | 53 | 602 | 512706469 | 512707021 | 5.430000e-105 | 392 |
11 | TraesCS7A01G377900 | chr7B | 85.312 | 320 | 25 | 14 | 291 | 602 | 512694008 | 512694313 | 1.560000e-80 | 311 |
12 | TraesCS7A01G377900 | chr7B | 77.583 | 571 | 67 | 36 | 417 | 956 | 512692981 | 512693521 | 7.330000e-74 | 289 |
13 | TraesCS7A01G377900 | chr7B | 93.750 | 80 | 4 | 1 | 5587 | 5665 | 512712243 | 512712322 | 1.020000e-22 | 119 |
14 | TraesCS7A01G377900 | chr6D | 83.350 | 985 | 154 | 6 | 3255 | 4237 | 1413807 | 1412831 | 0.000000e+00 | 902 |
15 | TraesCS7A01G377900 | chr6D | 76.612 | 1163 | 248 | 20 | 3086 | 4238 | 157441343 | 157440195 | 2.290000e-173 | 619 |
16 | TraesCS7A01G377900 | chr6D | 79.238 | 525 | 101 | 8 | 3635 | 4155 | 157666496 | 157667016 | 5.500000e-95 | 359 |
17 | TraesCS7A01G377900 | chr6D | 82.317 | 164 | 27 | 2 | 4366 | 4528 | 157593785 | 157593947 | 2.170000e-29 | 141 |
18 | TraesCS7A01G377900 | chr6B | 81.312 | 1113 | 192 | 12 | 3130 | 4237 | 5731924 | 5733025 | 0.000000e+00 | 889 |
19 | TraesCS7A01G377900 | chr6B | 74.466 | 983 | 216 | 27 | 3209 | 4177 | 715638109 | 715637148 | 5.430000e-105 | 392 |
20 | TraesCS7A01G377900 | chr5B | 80.615 | 325 | 59 | 4 | 3635 | 3957 | 516085608 | 516085930 | 1.240000e-61 | 248 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G377900 | chr7A | 553363921 | 553369698 | 5777 | False | 10671.000000 | 10671 | 100.000000 | 1 | 5778 | 1 | chr7A.!!$F1 | 5777 |
1 | TraesCS7A01G377900 | chr7D | 485024607 | 485030181 | 5574 | False | 2820.666667 | 7838 | 90.885667 | 3 | 5665 | 3 | chr7D.!!$F1 | 5662 |
2 | TraesCS7A01G377900 | chr7B | 663116015 | 663120325 | 4310 | True | 2171.000000 | 3714 | 85.487500 | 989 | 5016 | 2 | chr7B.!!$R1 | 4027 |
3 | TraesCS7A01G377900 | chr7B | 512692981 | 512699725 | 6744 | False | 1724.500000 | 4451 | 86.269750 | 291 | 5634 | 4 | chr7B.!!$F1 | 5343 |
4 | TraesCS7A01G377900 | chr7B | 512706469 | 512712322 | 5853 | False | 1557.000000 | 3934 | 88.657250 | 53 | 5665 | 4 | chr7B.!!$F2 | 5612 |
5 | TraesCS7A01G377900 | chr6D | 1412831 | 1413807 | 976 | True | 902.000000 | 902 | 83.350000 | 3255 | 4237 | 1 | chr6D.!!$R1 | 982 |
6 | TraesCS7A01G377900 | chr6D | 157440195 | 157441343 | 1148 | True | 619.000000 | 619 | 76.612000 | 3086 | 4238 | 1 | chr6D.!!$R2 | 1152 |
7 | TraesCS7A01G377900 | chr6D | 157666496 | 157667016 | 520 | False | 359.000000 | 359 | 79.238000 | 3635 | 4155 | 1 | chr6D.!!$F2 | 520 |
8 | TraesCS7A01G377900 | chr6B | 5731924 | 5733025 | 1101 | False | 889.000000 | 889 | 81.312000 | 3130 | 4237 | 1 | chr6B.!!$F1 | 1107 |
9 | TraesCS7A01G377900 | chr6B | 715637148 | 715638109 | 961 | True | 392.000000 | 392 | 74.466000 | 3209 | 4177 | 1 | chr6B.!!$R1 | 968 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
499 | 1271 | 0.322546 | CTCCCTTAACCTGGCACACC | 60.323 | 60.0 | 0.00 | 0.0 | 0.00 | 4.16 | F |
1135 | 2368 | 0.036294 | GCTCCCCGTGCTAGTTTCTT | 60.036 | 55.0 | 0.00 | 0.0 | 0.00 | 2.52 | F |
1744 | 2977 | 0.036732 | TCTAGGCCACAACCAGCTTG | 59.963 | 55.0 | 5.01 | 0.0 | 35.77 | 4.01 | F |
2361 | 3614 | 0.469144 | TGGGAAACAACCTTCCAGGC | 60.469 | 55.0 | 4.84 | 0.0 | 45.86 | 4.85 | F |
2876 | 4129 | 1.578897 | TCGATCCCTCCCACATTCAA | 58.421 | 50.0 | 0.00 | 0.0 | 0.00 | 2.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1759 | 2992 | 0.674895 | ACAAGGTTGCTGATCTCCGC | 60.675 | 55.000 | 0.00 | 0.0 | 0.00 | 5.54 | R |
2568 | 3821 | 0.394938 | TGCTTAGGCTGGACACGAAA | 59.605 | 50.000 | 0.00 | 0.0 | 39.59 | 3.46 | R |
2572 | 3825 | 1.135286 | GCAATTGCTTAGGCTGGACAC | 60.135 | 52.381 | 23.21 | 0.0 | 39.59 | 3.67 | R |
4197 | 5455 | 0.179062 | AGCCGATTGTGCCTCTCATC | 60.179 | 55.000 | 0.00 | 0.0 | 0.00 | 2.92 | R |
4841 | 6392 | 0.905357 | TTGGAACTAGCTGGAGCCTC | 59.095 | 55.000 | 3.17 | 0.0 | 43.38 | 4.70 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.069232 | CGGCTTGCCTCCACTCGA | 62.069 | 66.667 | 10.12 | 0.00 | 0.00 | 4.04 |
129 | 133 | 2.819608 | CTCCTTCCATTTTTCGGCAGAA | 59.180 | 45.455 | 0.00 | 0.00 | 33.98 | 3.02 |
162 | 166 | 4.493547 | CTCCTCAATGTTGACTGAGAGAC | 58.506 | 47.826 | 10.05 | 0.00 | 41.38 | 3.36 |
165 | 169 | 5.012458 | TCCTCAATGTTGACTGAGAGACAAT | 59.988 | 40.000 | 0.68 | 0.00 | 41.38 | 2.71 |
209 | 213 | 6.538021 | GCATCACTAGTTCAGATTCTTCACAT | 59.462 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
217 | 227 | 7.759465 | AGTTCAGATTCTTCACATGCAAATAG | 58.241 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
218 | 228 | 6.127810 | TCAGATTCTTCACATGCAAATAGC | 57.872 | 37.500 | 0.00 | 0.00 | 45.96 | 2.97 |
247 | 257 | 1.032657 | TAGCAGACACCTCTCGCCTC | 61.033 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
278 | 289 | 1.525077 | TGTCCCCAGCAACGACAAC | 60.525 | 57.895 | 0.00 | 0.00 | 33.72 | 3.32 |
283 | 294 | 0.588252 | CCCAGCAACGACAACAAGAG | 59.412 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
285 | 296 | 1.528586 | CCAGCAACGACAACAAGAGAG | 59.471 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
288 | 299 | 2.158957 | AGCAACGACAACAAGAGAGGAA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
289 | 300 | 2.808543 | GCAACGACAACAAGAGAGGAAT | 59.191 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
290 | 301 | 3.120511 | GCAACGACAACAAGAGAGGAATC | 60.121 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
292 | 303 | 4.608948 | ACGACAACAAGAGAGGAATCTT | 57.391 | 40.909 | 0.00 | 0.00 | 40.17 | 2.40 |
387 | 1156 | 2.730672 | GCGACAGTGACACGGATGC | 61.731 | 63.158 | 12.91 | 11.17 | 0.00 | 3.91 |
496 | 1268 | 3.079578 | GTTTACTCCCTTAACCTGGCAC | 58.920 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
497 | 1269 | 2.032965 | TACTCCCTTAACCTGGCACA | 57.967 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
498 | 1270 | 0.400594 | ACTCCCTTAACCTGGCACAC | 59.599 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
499 | 1271 | 0.322546 | CTCCCTTAACCTGGCACACC | 60.323 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
500 | 1272 | 1.063070 | TCCCTTAACCTGGCACACCA | 61.063 | 55.000 | 0.00 | 0.00 | 46.51 | 4.17 |
512 | 1284 | 2.898612 | TGGCACACCATGATGTTTCATT | 59.101 | 40.909 | 0.00 | 0.00 | 42.67 | 2.57 |
534 | 1314 | 5.511234 | TTAGCTCCGTTAACTCCATAGTC | 57.489 | 43.478 | 3.71 | 0.00 | 33.75 | 2.59 |
536 | 1316 | 3.633065 | AGCTCCGTTAACTCCATAGTCTC | 59.367 | 47.826 | 3.71 | 0.00 | 33.75 | 3.36 |
546 | 1326 | 3.052566 | ACTCCATAGTCTCCATCCACTCA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
547 | 1327 | 3.570540 | TCCATAGTCTCCATCCACTCAG | 58.429 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
551 | 1331 | 2.733956 | AGTCTCCATCCACTCAGACTC | 58.266 | 52.381 | 0.00 | 0.00 | 41.47 | 3.36 |
553 | 1333 | 1.359130 | TCTCCATCCACTCAGACTCCA | 59.641 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
559 | 1339 | 2.113807 | TCCACTCAGACTCCATCCATG | 58.886 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
560 | 1340 | 1.836166 | CCACTCAGACTCCATCCATGT | 59.164 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
561 | 1341 | 3.033909 | CCACTCAGACTCCATCCATGTA | 58.966 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
562 | 1342 | 3.181471 | CCACTCAGACTCCATCCATGTAC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 2.90 |
563 | 1343 | 3.448660 | CACTCAGACTCCATCCATGTACA | 59.551 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
594 | 1374 | 5.191722 | TCTCAAGGTAAACAATCTAGGCCAT | 59.808 | 40.000 | 5.01 | 0.00 | 0.00 | 4.40 |
637 | 1438 | 0.605589 | ACCTTGCGAGTCTGAAGAGG | 59.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
644 | 1445 | 0.735632 | GAGTCTGAAGAGGCTGCACG | 60.736 | 60.000 | 0.50 | 0.00 | 32.84 | 5.34 |
662 | 1495 | 3.546815 | GCACGCAGCATAAGATTTGGTAG | 60.547 | 47.826 | 0.00 | 0.00 | 44.79 | 3.18 |
664 | 1497 | 3.871594 | ACGCAGCATAAGATTTGGTAGTC | 59.128 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
690 | 1523 | 9.226606 | CAACTTGGGATACAACTAATCAGTTAA | 57.773 | 33.333 | 0.00 | 0.00 | 43.30 | 2.01 |
727 | 1603 | 8.058915 | GTCATCGAGAACATGCTTAGTTAATTC | 58.941 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
730 | 1606 | 8.186178 | TCGAGAACATGCTTAGTTAATTCTTC | 57.814 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
731 | 1607 | 8.035394 | TCGAGAACATGCTTAGTTAATTCTTCT | 58.965 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
732 | 1608 | 8.324567 | CGAGAACATGCTTAGTTAATTCTTCTC | 58.675 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
733 | 1609 | 9.377312 | GAGAACATGCTTAGTTAATTCTTCTCT | 57.623 | 33.333 | 0.00 | 0.00 | 31.30 | 3.10 |
734 | 1610 | 9.732130 | AGAACATGCTTAGTTAATTCTTCTCTT | 57.268 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
735 | 1611 | 9.980780 | GAACATGCTTAGTTAATTCTTCTCTTC | 57.019 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
736 | 1612 | 9.732130 | AACATGCTTAGTTAATTCTTCTCTTCT | 57.268 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
737 | 1613 | 9.160496 | ACATGCTTAGTTAATTCTTCTCTTCTG | 57.840 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
738 | 1614 | 8.610896 | CATGCTTAGTTAATTCTTCTCTTCTGG | 58.389 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
740 | 1616 | 6.595716 | GCTTAGTTAATTCTTCTCTTCTGGCA | 59.404 | 38.462 | 0.00 | 0.00 | 0.00 | 4.92 |
742 | 1618 | 9.823647 | CTTAGTTAATTCTTCTCTTCTGGCATA | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
743 | 1619 | 9.601217 | TTAGTTAATTCTTCTCTTCTGGCATAC | 57.399 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
745 | 1621 | 8.103305 | AGTTAATTCTTCTCTTCTGGCATACAA | 58.897 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
746 | 1622 | 8.897752 | GTTAATTCTTCTCTTCTGGCATACAAT | 58.102 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
748 | 1624 | 8.443953 | AATTCTTCTCTTCTGGCATACAATAC | 57.556 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
749 | 1625 | 6.544928 | TCTTCTCTTCTGGCATACAATACA | 57.455 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
750 | 1626 | 7.129457 | TCTTCTCTTCTGGCATACAATACAT | 57.871 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
751 | 1627 | 8.250143 | TCTTCTCTTCTGGCATACAATACATA | 57.750 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
752 | 1628 | 8.363390 | TCTTCTCTTCTGGCATACAATACATAG | 58.637 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
753 | 1629 | 6.459066 | TCTCTTCTGGCATACAATACATAGC | 58.541 | 40.000 | 0.00 | 0.00 | 0.00 | 2.97 |
754 | 1630 | 6.268617 | TCTCTTCTGGCATACAATACATAGCT | 59.731 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
758 | 1634 | 8.417273 | TTCTGGCATACAATACATAGCTAGTA | 57.583 | 34.615 | 0.00 | 2.75 | 33.18 | 1.82 |
826 | 1956 | 3.508762 | GCAGATTCTCAATTGCACAAGG | 58.491 | 45.455 | 0.00 | 0.00 | 36.59 | 3.61 |
934 | 2067 | 2.633481 | ACTTGAGTACTCTGTTGACCCC | 59.367 | 50.000 | 23.01 | 0.00 | 0.00 | 4.95 |
1000 | 2224 | 5.412640 | CATGAATTATTGAGCAACTTGCCA | 58.587 | 37.500 | 10.25 | 5.59 | 46.52 | 4.92 |
1087 | 2319 | 0.672342 | AAGTGAGCAAAAGCAGCCAG | 59.328 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1088 | 2320 | 1.372623 | GTGAGCAAAAGCAGCCAGC | 60.373 | 57.895 | 0.00 | 0.00 | 46.19 | 4.85 |
1135 | 2368 | 0.036294 | GCTCCCCGTGCTAGTTTCTT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1172 | 2405 | 2.920384 | TAGCACGGGGTCAGCACA | 60.920 | 61.111 | 0.00 | 0.00 | 0.00 | 4.57 |
1224 | 2457 | 1.291588 | CAGCGACCACTCTGCTCTT | 59.708 | 57.895 | 0.00 | 0.00 | 36.69 | 2.85 |
1227 | 2460 | 0.735632 | GCGACCACTCTGCTCTTCTG | 60.736 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1237 | 2470 | 2.301296 | TCTGCTCTTCTGTCCTTCAAGG | 59.699 | 50.000 | 0.00 | 0.00 | 36.46 | 3.61 |
1271 | 2504 | 2.362120 | CCCCTTGCAAGCTCTGGG | 60.362 | 66.667 | 21.43 | 20.65 | 37.68 | 4.45 |
1453 | 2686 | 3.846430 | GCCTAGCCGGTAACCGCT | 61.846 | 66.667 | 1.90 | 0.00 | 46.86 | 5.52 |
1456 | 2689 | 1.514087 | CTAGCCGGTAACCGCTTGA | 59.486 | 57.895 | 1.90 | 0.00 | 46.86 | 3.02 |
1657 | 2890 | 0.179134 | CCTGGGTTTACTCGAGCTCG | 60.179 | 60.000 | 30.03 | 30.03 | 41.45 | 5.03 |
1738 | 2971 | 0.824759 | ACTCGATCTAGGCCACAACC | 59.175 | 55.000 | 5.01 | 0.00 | 0.00 | 3.77 |
1744 | 2977 | 0.036732 | TCTAGGCCACAACCAGCTTG | 59.963 | 55.000 | 5.01 | 0.00 | 35.77 | 4.01 |
1745 | 2978 | 0.962356 | CTAGGCCACAACCAGCTTGG | 60.962 | 60.000 | 5.01 | 0.00 | 45.02 | 3.61 |
1782 | 3015 | 2.485814 | GGAGATCAGCAACCTTGTGAAC | 59.514 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1790 | 3023 | 2.486548 | GCAACCTTGTGAACCTGGAGTA | 60.487 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1855 | 3088 | 4.076394 | TGGCATAGGTAACCTTGTCAAAC | 58.924 | 43.478 | 0.00 | 0.00 | 34.61 | 2.93 |
1885 | 3118 | 7.917505 | ACACACTTTCTCTGAATTCAAATCAAC | 59.082 | 33.333 | 9.88 | 0.00 | 0.00 | 3.18 |
1959 | 3192 | 1.203174 | AGCCTGGCCACAAATAACCTT | 60.203 | 47.619 | 16.57 | 0.00 | 0.00 | 3.50 |
2015 | 3248 | 8.112016 | TCATATCTCTCGGTACTCAATTTAGG | 57.888 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
2090 | 3323 | 2.822561 | TCTCTGCCATATCTCTTAGCCG | 59.177 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2122 | 3355 | 1.551430 | CTGGCCAAATTCCAGCATCAA | 59.449 | 47.619 | 7.01 | 0.00 | 43.88 | 2.57 |
2180 | 3413 | 7.987458 | TCTGTCATTCAATAATCTTACAGGTCC | 59.013 | 37.037 | 0.00 | 0.00 | 32.87 | 4.46 |
2361 | 3614 | 0.469144 | TGGGAAACAACCTTCCAGGC | 60.469 | 55.000 | 4.84 | 0.00 | 45.86 | 4.85 |
2397 | 3650 | 6.039717 | TCCTTGCAGCTTATAATCAATTCCAC | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
2401 | 3654 | 5.221048 | GCAGCTTATAATCAATTCCACGGTT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2568 | 3821 | 2.224159 | ACAAGATGCCGACTGGGGT | 61.224 | 57.895 | 0.00 | 0.00 | 35.78 | 4.95 |
2572 | 3825 | 2.046314 | ATGCCGACTGGGGTTTCG | 60.046 | 61.111 | 0.00 | 0.00 | 35.78 | 3.46 |
2741 | 3994 | 2.989840 | CTGAAGTAGTGGCGAACTTGAG | 59.010 | 50.000 | 3.99 | 1.99 | 40.56 | 3.02 |
2875 | 4128 | 1.694150 | GATCGATCCCTCCCACATTCA | 59.306 | 52.381 | 14.76 | 0.00 | 0.00 | 2.57 |
2876 | 4129 | 1.578897 | TCGATCCCTCCCACATTCAA | 58.421 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2951 | 4204 | 3.323403 | AGCATACCTTCTAGTCTCATGGC | 59.677 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
2993 | 4246 | 2.168313 | ACCTTTCAAACAACAGCCTTGG | 59.832 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
3042 | 4295 | 8.958119 | TCCTTATAAACACATTGTCCATCTAC | 57.042 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
3049 | 4302 | 5.423015 | ACACATTGTCCATCTACATGAGAC | 58.577 | 41.667 | 0.00 | 0.00 | 36.87 | 3.36 |
3265 | 4518 | 5.693961 | TGAAAGCCCTATTGATGCTTGATA | 58.306 | 37.500 | 0.00 | 0.00 | 44.11 | 2.15 |
3348 | 4601 | 8.571461 | TTGCTAGTTTGAATCTCTCATTCAAT | 57.429 | 30.769 | 9.89 | 0.94 | 44.45 | 2.57 |
4197 | 5455 | 4.770795 | AGAAATCAACTAGTTGGGGATCG | 58.229 | 43.478 | 30.35 | 8.00 | 40.78 | 3.69 |
4452 | 5988 | 2.775890 | ACTGTTGCTGGAGATGTTCAG | 58.224 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
4471 | 6007 | 2.035066 | CAGTGGAAAAAGGCCAACAGAG | 59.965 | 50.000 | 5.01 | 0.00 | 37.12 | 3.35 |
4597 | 6133 | 2.366266 | TGGCAAAGAAAGCAGCTCAAAT | 59.634 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
4606 | 6142 | 6.000219 | AGAAAGCAGCTCAAATTCTAACAGA | 59.000 | 36.000 | 5.42 | 0.00 | 0.00 | 3.41 |
4675 | 6211 | 3.376546 | GGATTTCATGCTCACAAGAGACC | 59.623 | 47.826 | 0.00 | 0.00 | 44.98 | 3.85 |
4748 | 6284 | 5.815233 | AAGAGACAGATTTGACAAGGAGA | 57.185 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
4907 | 6462 | 9.632807 | GTGTTTTGTGGAATATTTGCTGTATTA | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
5031 | 6588 | 7.022055 | TGTTGTAATAATCAGCCGGTTATTG | 57.978 | 36.000 | 14.78 | 4.97 | 33.75 | 1.90 |
5043 | 6600 | 2.800544 | CCGGTTATTGAGATTAGCGTGG | 59.199 | 50.000 | 0.00 | 0.00 | 34.92 | 4.94 |
5104 | 6662 | 6.722590 | TCACCATGGACCTATATAACACGTAT | 59.277 | 38.462 | 21.47 | 0.00 | 0.00 | 3.06 |
5124 | 6682 | 1.741770 | CGTCCCTGCCTAACAGCAC | 60.742 | 63.158 | 0.00 | 0.00 | 45.78 | 4.40 |
5144 | 6703 | 2.629656 | CGCTTCCAGCCCCACTTTG | 61.630 | 63.158 | 0.00 | 0.00 | 38.18 | 2.77 |
5182 | 6741 | 4.891168 | TGCCTTATGTATTCTCCACGACTA | 59.109 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
5228 | 6796 | 4.141846 | CCAGAACAATGCTTAGCTAGGAGA | 60.142 | 45.833 | 7.11 | 0.00 | 0.00 | 3.71 |
5279 | 6847 | 4.521943 | CTTCACGCAATGCTTAGCTTATC | 58.478 | 43.478 | 5.60 | 0.00 | 0.00 | 1.75 |
5280 | 6848 | 3.797039 | TCACGCAATGCTTAGCTTATCT | 58.203 | 40.909 | 5.60 | 0.00 | 0.00 | 1.98 |
5281 | 6849 | 4.191544 | TCACGCAATGCTTAGCTTATCTT | 58.808 | 39.130 | 5.60 | 0.00 | 0.00 | 2.40 |
5282 | 6850 | 5.356426 | TCACGCAATGCTTAGCTTATCTTA | 58.644 | 37.500 | 5.60 | 0.00 | 0.00 | 2.10 |
5283 | 6851 | 5.991606 | TCACGCAATGCTTAGCTTATCTTAT | 59.008 | 36.000 | 5.60 | 0.00 | 0.00 | 1.73 |
5304 | 6872 | 7.755373 | TCTTATTCGCTTACATCCTCGATTATG | 59.245 | 37.037 | 5.77 | 5.77 | 0.00 | 1.90 |
5630 | 7227 | 2.030363 | CGTGCTTGTCATGGGCTAAAAA | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
5642 | 7239 | 7.167468 | GTCATGGGCTAAAAATAAACGCTATTG | 59.833 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
5644 | 7241 | 5.652891 | TGGGCTAAAAATAAACGCTATTGGA | 59.347 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
5665 | 7263 | 4.020662 | GGATTATCTTTTGGCCCAACACAA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
5666 | 7264 | 5.338300 | GGATTATCTTTTGGCCCAACACAAT | 60.338 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5667 | 7265 | 6.127196 | GGATTATCTTTTGGCCCAACACAATA | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
5668 | 7266 | 4.806640 | ATCTTTTGGCCCAACACAATAG | 57.193 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
5669 | 7267 | 2.298729 | TCTTTTGGCCCAACACAATAGC | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 2.97 |
5670 | 7268 | 2.008242 | TTTGGCCCAACACAATAGCT | 57.992 | 45.000 | 0.00 | 0.00 | 0.00 | 3.32 |
5671 | 7269 | 2.008242 | TTGGCCCAACACAATAGCTT | 57.992 | 45.000 | 0.00 | 0.00 | 0.00 | 3.74 |
5672 | 7270 | 1.544724 | TGGCCCAACACAATAGCTTC | 58.455 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5673 | 7271 | 0.451783 | GGCCCAACACAATAGCTTCG | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
5674 | 7272 | 0.451783 | GCCCAACACAATAGCTTCGG | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5675 | 7273 | 0.451783 | CCCAACACAATAGCTTCGGC | 59.548 | 55.000 | 0.00 | 0.00 | 42.17 | 5.54 |
5686 | 7284 | 3.834732 | GCTTCGGCTAGAGAAACCA | 57.165 | 52.632 | 0.00 | 0.00 | 38.08 | 3.67 |
5687 | 7285 | 2.317530 | GCTTCGGCTAGAGAAACCAT | 57.682 | 50.000 | 0.00 | 0.00 | 38.08 | 3.55 |
5688 | 7286 | 1.936547 | GCTTCGGCTAGAGAAACCATG | 59.063 | 52.381 | 0.00 | 0.00 | 38.08 | 3.66 |
5689 | 7287 | 2.418746 | GCTTCGGCTAGAGAAACCATGA | 60.419 | 50.000 | 0.00 | 0.00 | 38.08 | 3.07 |
5690 | 7288 | 3.742640 | GCTTCGGCTAGAGAAACCATGAT | 60.743 | 47.826 | 0.00 | 0.00 | 38.08 | 2.45 |
5691 | 7289 | 4.446371 | CTTCGGCTAGAGAAACCATGATT | 58.554 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
5692 | 7290 | 4.487714 | TCGGCTAGAGAAACCATGATTT | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
5693 | 7291 | 5.607939 | TCGGCTAGAGAAACCATGATTTA | 57.392 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
5694 | 7292 | 5.357257 | TCGGCTAGAGAAACCATGATTTAC | 58.643 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
5695 | 7293 | 5.128827 | TCGGCTAGAGAAACCATGATTTACT | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5696 | 7294 | 6.322969 | TCGGCTAGAGAAACCATGATTTACTA | 59.677 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
5697 | 7295 | 6.984474 | CGGCTAGAGAAACCATGATTTACTAA | 59.016 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
5698 | 7296 | 7.657761 | CGGCTAGAGAAACCATGATTTACTAAT | 59.342 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
5699 | 7297 | 9.998106 | GGCTAGAGAAACCATGATTTACTAATA | 57.002 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
5702 | 7300 | 8.366671 | AGAGAAACCATGATTTACTAATACGC | 57.633 | 34.615 | 0.00 | 0.00 | 0.00 | 4.42 |
5703 | 7301 | 7.985184 | AGAGAAACCATGATTTACTAATACGCA | 59.015 | 33.333 | 0.00 | 0.00 | 0.00 | 5.24 |
5704 | 7302 | 7.916552 | AGAAACCATGATTTACTAATACGCAC | 58.083 | 34.615 | 0.00 | 0.00 | 0.00 | 5.34 |
5705 | 7303 | 5.900339 | ACCATGATTTACTAATACGCACG | 57.100 | 39.130 | 0.00 | 0.00 | 0.00 | 5.34 |
5706 | 7304 | 4.210537 | ACCATGATTTACTAATACGCACGC | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 5.34 |
5707 | 7305 | 4.210328 | CCATGATTTACTAATACGCACGCA | 59.790 | 41.667 | 0.00 | 0.00 | 0.00 | 5.24 |
5708 | 7306 | 5.107104 | CCATGATTTACTAATACGCACGCAT | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 4.73 |
5709 | 7307 | 5.570262 | TGATTTACTAATACGCACGCATC | 57.430 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
5710 | 7308 | 4.446385 | TGATTTACTAATACGCACGCATCC | 59.554 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
5711 | 7309 | 2.427232 | TACTAATACGCACGCATCCC | 57.573 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5712 | 7310 | 0.750850 | ACTAATACGCACGCATCCCT | 59.249 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5713 | 7311 | 1.958579 | ACTAATACGCACGCATCCCTA | 59.041 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
5714 | 7312 | 2.363038 | ACTAATACGCACGCATCCCTAA | 59.637 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
5715 | 7313 | 2.319136 | AATACGCACGCATCCCTAAA | 57.681 | 45.000 | 0.00 | 0.00 | 0.00 | 1.85 |
5716 | 7314 | 2.319136 | ATACGCACGCATCCCTAAAA | 57.681 | 45.000 | 0.00 | 0.00 | 0.00 | 1.52 |
5717 | 7315 | 2.096220 | TACGCACGCATCCCTAAAAA | 57.904 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5742 | 7340 | 7.544511 | AATACTAATACGTACGCAAATCTCG | 57.455 | 36.000 | 16.72 | 0.00 | 0.00 | 4.04 |
5743 | 7341 | 5.160699 | ACTAATACGTACGCAAATCTCGA | 57.839 | 39.130 | 16.72 | 0.00 | 0.00 | 4.04 |
5744 | 7342 | 5.572211 | ACTAATACGTACGCAAATCTCGAA | 58.428 | 37.500 | 16.72 | 0.00 | 0.00 | 3.71 |
5745 | 7343 | 6.029607 | ACTAATACGTACGCAAATCTCGAAA | 58.970 | 36.000 | 16.72 | 0.00 | 0.00 | 3.46 |
5746 | 7344 | 5.766702 | AATACGTACGCAAATCTCGAAAA | 57.233 | 34.783 | 16.72 | 0.00 | 0.00 | 2.29 |
5747 | 7345 | 5.766702 | ATACGTACGCAAATCTCGAAAAA | 57.233 | 34.783 | 16.72 | 0.00 | 0.00 | 1.94 |
5748 | 7346 | 4.657075 | ACGTACGCAAATCTCGAAAAAT | 57.343 | 36.364 | 16.72 | 0.00 | 0.00 | 1.82 |
5749 | 7347 | 5.766702 | ACGTACGCAAATCTCGAAAAATA | 57.233 | 34.783 | 16.72 | 0.00 | 0.00 | 1.40 |
5750 | 7348 | 5.544621 | ACGTACGCAAATCTCGAAAAATAC | 58.455 | 37.500 | 16.72 | 0.00 | 0.00 | 1.89 |
5751 | 7349 | 5.346822 | ACGTACGCAAATCTCGAAAAATACT | 59.653 | 36.000 | 16.72 | 0.00 | 0.00 | 2.12 |
5752 | 7350 | 6.527722 | ACGTACGCAAATCTCGAAAAATACTA | 59.472 | 34.615 | 16.72 | 0.00 | 0.00 | 1.82 |
5753 | 7351 | 7.062138 | ACGTACGCAAATCTCGAAAAATACTAA | 59.938 | 33.333 | 16.72 | 0.00 | 0.00 | 2.24 |
5754 | 7352 | 8.054236 | CGTACGCAAATCTCGAAAAATACTAAT | 58.946 | 33.333 | 0.52 | 0.00 | 0.00 | 1.73 |
5757 | 7355 | 9.095065 | ACGCAAATCTCGAAAAATACTAATACT | 57.905 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
5758 | 7356 | 9.916397 | CGCAAATCTCGAAAAATACTAATACTT | 57.084 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
5763 | 7361 | 8.261628 | TCTCGAAAAATACTAATACTTACGCG | 57.738 | 34.615 | 3.53 | 3.53 | 0.00 | 6.01 |
5764 | 7362 | 7.376866 | TCTCGAAAAATACTAATACTTACGCGG | 59.623 | 37.037 | 12.47 | 0.00 | 0.00 | 6.46 |
5765 | 7363 | 7.192913 | TCGAAAAATACTAATACTTACGCGGA | 58.807 | 34.615 | 12.47 | 0.00 | 0.00 | 5.54 |
5766 | 7364 | 7.862372 | TCGAAAAATACTAATACTTACGCGGAT | 59.138 | 33.333 | 12.47 | 0.00 | 0.00 | 4.18 |
5767 | 7365 | 9.117145 | CGAAAAATACTAATACTTACGCGGATA | 57.883 | 33.333 | 12.47 | 0.00 | 0.00 | 2.59 |
5772 | 7370 | 9.727627 | AATACTAATACTTACGCGGATATTAGC | 57.272 | 33.333 | 22.92 | 0.00 | 39.58 | 3.09 |
5773 | 7371 | 7.149569 | ACTAATACTTACGCGGATATTAGCA | 57.850 | 36.000 | 22.92 | 0.00 | 39.58 | 3.49 |
5774 | 7372 | 7.249147 | ACTAATACTTACGCGGATATTAGCAG | 58.751 | 38.462 | 22.92 | 10.05 | 39.58 | 4.24 |
5775 | 7373 | 5.892160 | ATACTTACGCGGATATTAGCAGA | 57.108 | 39.130 | 12.47 | 0.00 | 0.00 | 4.26 |
5776 | 7374 | 4.785511 | ACTTACGCGGATATTAGCAGAT | 57.214 | 40.909 | 12.47 | 0.00 | 0.00 | 2.90 |
5777 | 7375 | 5.135508 | ACTTACGCGGATATTAGCAGATT | 57.864 | 39.130 | 12.47 | 0.00 | 0.00 | 2.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.069232 | TCGAGTGGAGGCAAGCCG | 62.069 | 66.667 | 5.28 | 0.00 | 41.95 | 5.52 |
17 | 18 | 3.393800 | CTCAAGTGTTGAATGAGGTCGT | 58.606 | 45.455 | 0.00 | 0.00 | 39.58 | 4.34 |
162 | 166 | 4.728608 | GCGTTTATTTTCTCTGCCGTATTG | 59.271 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
165 | 169 | 3.327626 | TGCGTTTATTTTCTCTGCCGTA | 58.672 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
217 | 227 | 4.003648 | AGGTGTCTGCTAAAACATACTGC | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
218 | 228 | 5.482908 | AGAGGTGTCTGCTAAAACATACTG | 58.517 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
247 | 257 | 2.428890 | CTGGGGACACTACTTAGCTCAG | 59.571 | 54.545 | 0.00 | 0.00 | 35.60 | 3.35 |
278 | 289 | 4.441913 | GCTCCTCTGAAGATTCCTCTCTTG | 60.442 | 50.000 | 0.00 | 0.00 | 35.63 | 3.02 |
283 | 294 | 2.499289 | TGTGCTCCTCTGAAGATTCCTC | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
285 | 296 | 3.340814 | TTGTGCTCCTCTGAAGATTCC | 57.659 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
288 | 299 | 3.582208 | AGACTTTGTGCTCCTCTGAAGAT | 59.418 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
289 | 300 | 2.968574 | AGACTTTGTGCTCCTCTGAAGA | 59.031 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
290 | 301 | 3.399440 | AGACTTTGTGCTCCTCTGAAG | 57.601 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
292 | 303 | 4.955811 | TTTAGACTTTGTGCTCCTCTGA | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
387 | 1156 | 3.346315 | TGTGATTATCCTGGTGCTGTTG | 58.654 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
461 | 1233 | 6.104146 | GGGAGTAAACTCTCTTTGTCTCTT | 57.896 | 41.667 | 9.84 | 0.00 | 40.32 | 2.85 |
496 | 1268 | 5.585390 | GGAGCTAAATGAAACATCATGGTG | 58.415 | 41.667 | 3.86 | 3.86 | 0.00 | 4.17 |
497 | 1269 | 4.336433 | CGGAGCTAAATGAAACATCATGGT | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
498 | 1270 | 4.336433 | ACGGAGCTAAATGAAACATCATGG | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
499 | 1271 | 5.490139 | ACGGAGCTAAATGAAACATCATG | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
500 | 1272 | 7.336931 | AGTTAACGGAGCTAAATGAAACATCAT | 59.663 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
512 | 1284 | 5.198965 | AGACTATGGAGTTAACGGAGCTAA | 58.801 | 41.667 | 0.00 | 0.00 | 35.45 | 3.09 |
534 | 1314 | 1.857965 | TGGAGTCTGAGTGGATGGAG | 58.142 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
536 | 1316 | 1.415659 | GGATGGAGTCTGAGTGGATGG | 59.584 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
546 | 1326 | 4.610333 | TGTACTGTACATGGATGGAGTCT | 58.390 | 43.478 | 16.26 | 0.00 | 32.89 | 3.24 |
547 | 1327 | 4.402793 | ACTGTACTGTACATGGATGGAGTC | 59.597 | 45.833 | 19.99 | 0.00 | 38.15 | 3.36 |
551 | 1331 | 4.402474 | TGAGACTGTACTGTACATGGATGG | 59.598 | 45.833 | 19.99 | 10.41 | 38.15 | 3.51 |
553 | 1333 | 5.127845 | CCTTGAGACTGTACTGTACATGGAT | 59.872 | 44.000 | 19.99 | 7.75 | 38.15 | 3.41 |
559 | 1339 | 6.742109 | TGTTTACCTTGAGACTGTACTGTAC | 58.258 | 40.000 | 10.98 | 10.98 | 0.00 | 2.90 |
560 | 1340 | 6.964807 | TGTTTACCTTGAGACTGTACTGTA | 57.035 | 37.500 | 5.27 | 0.00 | 0.00 | 2.74 |
561 | 1341 | 5.864418 | TGTTTACCTTGAGACTGTACTGT | 57.136 | 39.130 | 4.92 | 4.92 | 0.00 | 3.55 |
562 | 1342 | 7.155328 | AGATTGTTTACCTTGAGACTGTACTG | 58.845 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
563 | 1343 | 7.304497 | AGATTGTTTACCTTGAGACTGTACT | 57.696 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
594 | 1374 | 1.207089 | CGATCTCCAGTGGGCTTGTTA | 59.793 | 52.381 | 9.92 | 0.00 | 0.00 | 2.41 |
624 | 1424 | 0.735632 | GTGCAGCCTCTTCAGACTCG | 60.736 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
644 | 1445 | 5.355350 | AGTTGACTACCAAATCTTATGCTGC | 59.645 | 40.000 | 0.00 | 0.00 | 36.36 | 5.25 |
662 | 1495 | 6.879458 | ACTGATTAGTTGTATCCCAAGTTGAC | 59.121 | 38.462 | 3.87 | 0.00 | 37.82 | 3.18 |
664 | 1497 | 7.687941 | AACTGATTAGTTGTATCCCAAGTTG | 57.312 | 36.000 | 1.44 | 0.00 | 45.17 | 3.16 |
690 | 1523 | 7.413438 | GCATGTTCTCGATGACTTGACTTTAAT | 60.413 | 37.037 | 14.43 | 0.00 | 0.00 | 1.40 |
699 | 1575 | 5.078411 | ACTAAGCATGTTCTCGATGACTT | 57.922 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
702 | 1578 | 7.981789 | AGAATTAACTAAGCATGTTCTCGATGA | 59.018 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
727 | 1603 | 7.117523 | GCTATGTATTGTATGCCAGAAGAGAAG | 59.882 | 40.741 | 0.00 | 0.00 | 0.00 | 2.85 |
730 | 1606 | 6.462500 | AGCTATGTATTGTATGCCAGAAGAG | 58.538 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
731 | 1607 | 6.425210 | AGCTATGTATTGTATGCCAGAAGA | 57.575 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
732 | 1608 | 7.382110 | ACTAGCTATGTATTGTATGCCAGAAG | 58.618 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
733 | 1609 | 7.303182 | ACTAGCTATGTATTGTATGCCAGAA | 57.697 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
734 | 1610 | 6.918067 | ACTAGCTATGTATTGTATGCCAGA | 57.082 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
735 | 1611 | 7.831753 | AGTACTAGCTATGTATTGTATGCCAG | 58.168 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
736 | 1612 | 7.776618 | AGTACTAGCTATGTATTGTATGCCA | 57.223 | 36.000 | 0.00 | 0.00 | 0.00 | 4.92 |
774 | 1705 | 0.253044 | GGAGTGCTGCCATTCCACTA | 59.747 | 55.000 | 0.00 | 0.00 | 44.75 | 2.74 |
775 | 1706 | 1.001641 | GGAGTGCTGCCATTCCACT | 60.002 | 57.895 | 0.00 | 0.00 | 44.75 | 4.00 |
934 | 2067 | 5.806502 | TCTGTTTTCAAGTTGCTGACAAATG | 59.193 | 36.000 | 0.00 | 0.00 | 37.58 | 2.32 |
973 | 2144 | 5.511234 | AGTTGCTCAATAATTCATGGCTC | 57.489 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
1032 | 2260 | 0.040958 | GACACAAGTGCGCTTTCCTG | 60.041 | 55.000 | 10.47 | 8.50 | 31.49 | 3.86 |
1087 | 2319 | 4.575236 | GCCTACTATGTTTCTACCAAAGGC | 59.425 | 45.833 | 0.00 | 0.00 | 39.03 | 4.35 |
1088 | 2320 | 4.809426 | CGCCTACTATGTTTCTACCAAAGG | 59.191 | 45.833 | 0.00 | 0.00 | 0.00 | 3.11 |
1089 | 2321 | 4.270325 | GCGCCTACTATGTTTCTACCAAAG | 59.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.77 |
1090 | 2322 | 4.186159 | GCGCCTACTATGTTTCTACCAAA | 58.814 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
1123 | 2356 | 2.413453 | CGAGGAGCAAAGAAACTAGCAC | 59.587 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1172 | 2405 | 1.964373 | GTTCCGGCGTGTGGAATGT | 60.964 | 57.895 | 6.01 | 0.00 | 46.55 | 2.71 |
1195 | 2428 | 1.130561 | GTGGTCGCTGGAATTACTTGC | 59.869 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
1224 | 2457 | 1.293498 | GAGCGCCTTGAAGGACAGA | 59.707 | 57.895 | 16.93 | 0.00 | 37.67 | 3.41 |
1227 | 2460 | 1.936547 | CTTATGAGCGCCTTGAAGGAC | 59.063 | 52.381 | 16.93 | 5.96 | 37.67 | 3.85 |
1237 | 2470 | 1.591863 | GGTCGTCCCTTATGAGCGC | 60.592 | 63.158 | 0.00 | 0.00 | 32.27 | 5.92 |
1271 | 2504 | 4.360405 | ACCGGTTGCCCCATGACC | 62.360 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1575 | 2808 | 3.433598 | GCCTGTTGTATCCAAGGCTGATA | 60.434 | 47.826 | 5.30 | 0.00 | 38.34 | 2.15 |
1657 | 2890 | 4.388499 | TTGGAGCTCGTTCCGGCC | 62.388 | 66.667 | 7.83 | 0.00 | 40.27 | 6.13 |
1744 | 2977 | 2.190578 | CGCAGGGATGGTTCCTCC | 59.809 | 66.667 | 0.00 | 0.00 | 42.20 | 4.30 |
1759 | 2992 | 0.674895 | ACAAGGTTGCTGATCTCCGC | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1782 | 3015 | 4.220693 | TGAAATGTCCACATACTCCAGG | 57.779 | 45.455 | 0.00 | 0.00 | 35.10 | 4.45 |
1790 | 3023 | 6.996509 | AGCTTATTGTTTGAAATGTCCACAT | 58.003 | 32.000 | 0.00 | 0.00 | 38.41 | 3.21 |
1855 | 3088 | 7.953158 | TTGAATTCAGAGAAAGTGTGTCTAG | 57.047 | 36.000 | 8.41 | 0.00 | 0.00 | 2.43 |
1866 | 3099 | 7.040892 | CCAGACAGTTGATTTGAATTCAGAGAA | 60.041 | 37.037 | 8.41 | 0.68 | 0.00 | 2.87 |
1885 | 3118 | 5.551233 | TGAACTTGGAATAGAACCAGACAG | 58.449 | 41.667 | 0.00 | 0.00 | 38.70 | 3.51 |
2015 | 3248 | 1.909700 | TCCTGTCAGGCCATTGTTTC | 58.090 | 50.000 | 14.64 | 0.00 | 34.61 | 2.78 |
2054 | 3287 | 2.233431 | GCAGAGAGTGATGTGAGGTTCT | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2090 | 3323 | 5.405935 | AATTTGGCCAGTTAGATGGTTTC | 57.594 | 39.130 | 5.11 | 0.00 | 42.75 | 2.78 |
2122 | 3355 | 3.330701 | TCAAGCAAGTTGAGGTTCCCTAT | 59.669 | 43.478 | 7.16 | 0.00 | 40.45 | 2.57 |
2180 | 3413 | 1.221635 | TCCAATGGAGTGGGGTATGG | 58.778 | 55.000 | 0.00 | 0.00 | 39.34 | 2.74 |
2187 | 3420 | 3.081804 | GTGTAGGTTTCCAATGGAGTGG | 58.918 | 50.000 | 0.86 | 0.00 | 40.33 | 4.00 |
2397 | 3650 | 3.197983 | ACAAAGAGGGAGGAATAGAACCG | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
2401 | 3654 | 3.181329 | TGCACAAAGAGGGAGGAATAGA | 58.819 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
2568 | 3821 | 0.394938 | TGCTTAGGCTGGACACGAAA | 59.605 | 50.000 | 0.00 | 0.00 | 39.59 | 3.46 |
2572 | 3825 | 1.135286 | GCAATTGCTTAGGCTGGACAC | 60.135 | 52.381 | 23.21 | 0.00 | 39.59 | 3.67 |
2662 | 3915 | 8.927721 | GTTAAGAAACTCTAGATTTGTGGAGAC | 58.072 | 37.037 | 0.00 | 0.00 | 32.54 | 3.36 |
2741 | 3994 | 1.277495 | AAAAAGTGCGCGCAGATTGC | 61.277 | 50.000 | 37.44 | 22.76 | 40.69 | 3.56 |
2750 | 4003 | 5.579511 | TGGTTACTATCTAGAAAAAGTGCGC | 59.420 | 40.000 | 0.00 | 0.00 | 0.00 | 6.09 |
2779 | 4032 | 4.961585 | AGAGAGGTTGGAATAGTACCCTT | 58.038 | 43.478 | 0.00 | 0.00 | 32.20 | 3.95 |
2875 | 4128 | 6.482308 | AGTTCGCTTAGTTGTGTAAGATTGTT | 59.518 | 34.615 | 0.00 | 0.00 | 32.52 | 2.83 |
2876 | 4129 | 5.989777 | AGTTCGCTTAGTTGTGTAAGATTGT | 59.010 | 36.000 | 0.00 | 0.00 | 32.52 | 2.71 |
2951 | 4204 | 7.687941 | AGGTCTAGTTTTTGTAATGGACATG | 57.312 | 36.000 | 0.00 | 0.00 | 38.07 | 3.21 |
3042 | 4295 | 9.994432 | GTTAATAGATTGTTTTGGAGTCTCATG | 57.006 | 33.333 | 1.47 | 0.00 | 0.00 | 3.07 |
3049 | 4302 | 5.067283 | CCCCGGTTAATAGATTGTTTTGGAG | 59.933 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3265 | 4518 | 7.530242 | GCTCCCTGAGAGATTATTATGGGAAAT | 60.530 | 40.741 | 0.00 | 0.00 | 46.50 | 2.17 |
3348 | 4601 | 1.345415 | GGAACCTCACCGTCCAAGTTA | 59.655 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
3535 | 4790 | 8.712363 | CAGTGCAAATACTAATGCGATAAGTAT | 58.288 | 33.333 | 0.00 | 0.00 | 45.47 | 2.12 |
4197 | 5455 | 0.179062 | AGCCGATTGTGCCTCTCATC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
4394 | 5930 | 5.184479 | AGACATCACCATGGATTGAAACTTG | 59.816 | 40.000 | 21.47 | 10.10 | 33.82 | 3.16 |
4452 | 5988 | 2.294512 | CTCTCTGTTGGCCTTTTTCCAC | 59.705 | 50.000 | 3.32 | 0.00 | 32.45 | 4.02 |
4471 | 6007 | 3.467374 | AAGGATTCTCCGAATCTGCTC | 57.533 | 47.619 | 14.20 | 1.09 | 42.75 | 4.26 |
4606 | 6142 | 6.322969 | TGCAAGCAATTCTCAGATCCATATTT | 59.677 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
4748 | 6284 | 2.434884 | CTCGCCTTCCGCACACAT | 60.435 | 61.111 | 0.00 | 0.00 | 37.30 | 3.21 |
4841 | 6392 | 0.905357 | TTGGAACTAGCTGGAGCCTC | 59.095 | 55.000 | 3.17 | 0.00 | 43.38 | 4.70 |
5005 | 6560 | 5.560966 | AACCGGCTGATTATTACAACAAG | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
5031 | 6588 | 3.368531 | GGTATGATCCCCACGCTAATCTC | 60.369 | 52.174 | 0.00 | 0.00 | 0.00 | 2.75 |
5043 | 6600 | 3.842869 | GATCAGCCGGTATGATCCC | 57.157 | 57.895 | 28.02 | 14.11 | 44.79 | 3.85 |
5104 | 6662 | 2.662596 | CTGTTAGGCAGGGACGCA | 59.337 | 61.111 | 0.00 | 0.00 | 41.42 | 5.24 |
5228 | 6796 | 2.098934 | TGTGAAAGCGTGCAATCTTGTT | 59.901 | 40.909 | 2.87 | 0.00 | 0.00 | 2.83 |
5279 | 6847 | 7.755373 | TCATAATCGAGGATGTAAGCGAATAAG | 59.245 | 37.037 | 8.68 | 0.00 | 36.28 | 1.73 |
5280 | 6848 | 7.541091 | GTCATAATCGAGGATGTAAGCGAATAA | 59.459 | 37.037 | 8.68 | 0.00 | 36.28 | 1.40 |
5281 | 6849 | 7.027760 | GTCATAATCGAGGATGTAAGCGAATA | 58.972 | 38.462 | 8.68 | 0.00 | 36.28 | 1.75 |
5282 | 6850 | 5.864474 | GTCATAATCGAGGATGTAAGCGAAT | 59.136 | 40.000 | 8.68 | 0.00 | 36.28 | 3.34 |
5283 | 6851 | 5.220381 | GTCATAATCGAGGATGTAAGCGAA | 58.780 | 41.667 | 8.68 | 0.00 | 36.28 | 4.70 |
5330 | 6898 | 1.546548 | GCAAGCTCCAAGGGAAGAAGT | 60.547 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
5443 | 7011 | 2.669569 | TGCTTGGCTTGTCCTCGC | 60.670 | 61.111 | 0.00 | 0.00 | 35.26 | 5.03 |
5482 | 7050 | 2.892640 | CCGTCAGATTCCTCCGCA | 59.107 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
5594 | 7191 | 1.414181 | AGCACGAGCCTGCTATACATT | 59.586 | 47.619 | 0.00 | 0.00 | 46.03 | 2.71 |
5630 | 7227 | 8.082242 | GCCAAAAGATAATCCAATAGCGTTTAT | 58.918 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5642 | 7239 | 3.513515 | TGTGTTGGGCCAAAAGATAATCC | 59.486 | 43.478 | 22.82 | 5.61 | 0.00 | 3.01 |
5644 | 7241 | 5.760484 | ATTGTGTTGGGCCAAAAGATAAT | 57.240 | 34.783 | 22.82 | 14.21 | 0.00 | 1.28 |
5668 | 7266 | 1.936547 | CATGGTTTCTCTAGCCGAAGC | 59.063 | 52.381 | 0.00 | 0.00 | 40.32 | 3.86 |
5669 | 7267 | 3.526931 | TCATGGTTTCTCTAGCCGAAG | 57.473 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
5670 | 7268 | 4.487714 | AATCATGGTTTCTCTAGCCGAA | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
5671 | 7269 | 4.487714 | AAATCATGGTTTCTCTAGCCGA | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 5.54 |
5672 | 7270 | 5.360591 | AGTAAATCATGGTTTCTCTAGCCG | 58.639 | 41.667 | 7.35 | 0.00 | 0.00 | 5.52 |
5673 | 7271 | 8.910351 | ATTAGTAAATCATGGTTTCTCTAGCC | 57.090 | 34.615 | 7.35 | 0.00 | 0.00 | 3.93 |
5676 | 7274 | 9.472361 | GCGTATTAGTAAATCATGGTTTCTCTA | 57.528 | 33.333 | 7.35 | 9.29 | 0.00 | 2.43 |
5677 | 7275 | 7.985184 | TGCGTATTAGTAAATCATGGTTTCTCT | 59.015 | 33.333 | 7.35 | 10.23 | 0.00 | 3.10 |
5678 | 7276 | 8.062448 | GTGCGTATTAGTAAATCATGGTTTCTC | 58.938 | 37.037 | 7.35 | 2.98 | 0.00 | 2.87 |
5679 | 7277 | 7.254319 | CGTGCGTATTAGTAAATCATGGTTTCT | 60.254 | 37.037 | 7.35 | 7.78 | 0.00 | 2.52 |
5680 | 7278 | 6.844279 | CGTGCGTATTAGTAAATCATGGTTTC | 59.156 | 38.462 | 7.35 | 0.17 | 0.00 | 2.78 |
5681 | 7279 | 6.711579 | CGTGCGTATTAGTAAATCATGGTTT | 58.288 | 36.000 | 9.31 | 9.31 | 0.00 | 3.27 |
5682 | 7280 | 5.277154 | GCGTGCGTATTAGTAAATCATGGTT | 60.277 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5683 | 7281 | 4.210537 | GCGTGCGTATTAGTAAATCATGGT | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
5684 | 7282 | 4.210328 | TGCGTGCGTATTAGTAAATCATGG | 59.790 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
5685 | 7283 | 5.323360 | TGCGTGCGTATTAGTAAATCATG | 57.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
5686 | 7284 | 5.120208 | GGATGCGTGCGTATTAGTAAATCAT | 59.880 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
5687 | 7285 | 4.446385 | GGATGCGTGCGTATTAGTAAATCA | 59.554 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5688 | 7286 | 4.143179 | GGGATGCGTGCGTATTAGTAAATC | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
5689 | 7287 | 3.744426 | GGGATGCGTGCGTATTAGTAAAT | 59.256 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
5690 | 7288 | 3.125316 | GGGATGCGTGCGTATTAGTAAA | 58.875 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
5691 | 7289 | 2.363038 | AGGGATGCGTGCGTATTAGTAA | 59.637 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
5692 | 7290 | 1.958579 | AGGGATGCGTGCGTATTAGTA | 59.041 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
5693 | 7291 | 0.750850 | AGGGATGCGTGCGTATTAGT | 59.249 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5694 | 7292 | 2.717580 | TAGGGATGCGTGCGTATTAG | 57.282 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5695 | 7293 | 3.455990 | TTTAGGGATGCGTGCGTATTA | 57.544 | 42.857 | 0.47 | 0.00 | 0.00 | 0.98 |
5696 | 7294 | 2.319136 | TTTAGGGATGCGTGCGTATT | 57.681 | 45.000 | 0.47 | 0.00 | 0.00 | 1.89 |
5697 | 7295 | 2.319136 | TTTTAGGGATGCGTGCGTAT | 57.681 | 45.000 | 0.47 | 0.00 | 0.00 | 3.06 |
5698 | 7296 | 2.096220 | TTTTTAGGGATGCGTGCGTA | 57.904 | 45.000 | 0.00 | 0.00 | 0.00 | 4.42 |
5699 | 7297 | 2.935505 | TTTTTAGGGATGCGTGCGT | 58.064 | 47.368 | 0.00 | 0.00 | 0.00 | 5.24 |
5716 | 7314 | 8.474577 | CGAGATTTGCGTACGTATTAGTATTTT | 58.525 | 33.333 | 17.90 | 0.00 | 0.00 | 1.82 |
5717 | 7315 | 7.857389 | TCGAGATTTGCGTACGTATTAGTATTT | 59.143 | 33.333 | 17.90 | 0.00 | 0.00 | 1.40 |
5718 | 7316 | 7.355017 | TCGAGATTTGCGTACGTATTAGTATT | 58.645 | 34.615 | 17.90 | 0.00 | 0.00 | 1.89 |
5719 | 7317 | 6.891624 | TCGAGATTTGCGTACGTATTAGTAT | 58.108 | 36.000 | 17.90 | 1.59 | 0.00 | 2.12 |
5720 | 7318 | 6.285790 | TCGAGATTTGCGTACGTATTAGTA | 57.714 | 37.500 | 17.90 | 0.00 | 0.00 | 1.82 |
5721 | 7319 | 5.160699 | TCGAGATTTGCGTACGTATTAGT | 57.839 | 39.130 | 17.90 | 0.00 | 0.00 | 2.24 |
5722 | 7320 | 6.486657 | TTTCGAGATTTGCGTACGTATTAG | 57.513 | 37.500 | 17.90 | 1.77 | 0.00 | 1.73 |
5723 | 7321 | 6.867799 | TTTTCGAGATTTGCGTACGTATTA | 57.132 | 33.333 | 17.90 | 4.13 | 0.00 | 0.98 |
5724 | 7322 | 5.766702 | TTTTCGAGATTTGCGTACGTATT | 57.233 | 34.783 | 17.90 | 2.94 | 0.00 | 1.89 |
5725 | 7323 | 5.766702 | TTTTTCGAGATTTGCGTACGTAT | 57.233 | 34.783 | 17.90 | 8.17 | 0.00 | 3.06 |
5726 | 7324 | 5.766702 | ATTTTTCGAGATTTGCGTACGTA | 57.233 | 34.783 | 17.90 | 10.06 | 0.00 | 3.57 |
5727 | 7325 | 4.657075 | ATTTTTCGAGATTTGCGTACGT | 57.343 | 36.364 | 17.90 | 0.00 | 0.00 | 3.57 |
5728 | 7326 | 5.782255 | AGTATTTTTCGAGATTTGCGTACG | 58.218 | 37.500 | 11.84 | 11.84 | 0.00 | 3.67 |
5731 | 7329 | 9.095065 | AGTATTAGTATTTTTCGAGATTTGCGT | 57.905 | 29.630 | 0.00 | 0.00 | 0.00 | 5.24 |
5732 | 7330 | 9.916397 | AAGTATTAGTATTTTTCGAGATTTGCG | 57.084 | 29.630 | 0.00 | 0.00 | 0.00 | 4.85 |
5737 | 7335 | 8.899776 | CGCGTAAGTATTAGTATTTTTCGAGAT | 58.100 | 33.333 | 0.00 | 0.00 | 41.68 | 2.75 |
5738 | 7336 | 7.376866 | CCGCGTAAGTATTAGTATTTTTCGAGA | 59.623 | 37.037 | 4.92 | 0.00 | 41.68 | 4.04 |
5739 | 7337 | 7.376866 | TCCGCGTAAGTATTAGTATTTTTCGAG | 59.623 | 37.037 | 4.92 | 0.00 | 41.68 | 4.04 |
5740 | 7338 | 7.192913 | TCCGCGTAAGTATTAGTATTTTTCGA | 58.807 | 34.615 | 4.92 | 0.00 | 41.68 | 3.71 |
5741 | 7339 | 7.380438 | TCCGCGTAAGTATTAGTATTTTTCG | 57.620 | 36.000 | 4.92 | 0.00 | 41.68 | 3.46 |
5746 | 7344 | 9.727627 | GCTAATATCCGCGTAAGTATTAGTATT | 57.272 | 33.333 | 23.05 | 6.89 | 38.48 | 1.89 |
5747 | 7345 | 8.896744 | TGCTAATATCCGCGTAAGTATTAGTAT | 58.103 | 33.333 | 23.05 | 0.00 | 38.48 | 2.12 |
5748 | 7346 | 8.267620 | TGCTAATATCCGCGTAAGTATTAGTA | 57.732 | 34.615 | 23.05 | 19.74 | 38.48 | 1.82 |
5749 | 7347 | 7.120285 | TCTGCTAATATCCGCGTAAGTATTAGT | 59.880 | 37.037 | 23.05 | 0.00 | 38.48 | 2.24 |
5750 | 7348 | 7.470079 | TCTGCTAATATCCGCGTAAGTATTAG | 58.530 | 38.462 | 20.67 | 20.67 | 38.90 | 1.73 |
5751 | 7349 | 7.381766 | TCTGCTAATATCCGCGTAAGTATTA | 57.618 | 36.000 | 4.92 | 7.34 | 41.68 | 0.98 |
5752 | 7350 | 6.263516 | TCTGCTAATATCCGCGTAAGTATT | 57.736 | 37.500 | 4.92 | 6.57 | 41.68 | 1.89 |
5753 | 7351 | 5.892160 | TCTGCTAATATCCGCGTAAGTAT | 57.108 | 39.130 | 4.92 | 0.00 | 41.68 | 2.12 |
5754 | 7352 | 5.892160 | ATCTGCTAATATCCGCGTAAGTA | 57.108 | 39.130 | 4.92 | 0.00 | 41.68 | 2.24 |
5755 | 7353 | 4.785511 | ATCTGCTAATATCCGCGTAAGT | 57.214 | 40.909 | 4.92 | 0.00 | 41.68 | 2.24 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.