Multiple sequence alignment - TraesCS7A01G377500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G377500 chr7A 100.000 3158 0 0 908 4065 552678993 552682150 0.000000e+00 5832
1 TraesCS7A01G377500 chr7A 100.000 505 0 0 1 505 552678086 552678590 0.000000e+00 933
2 TraesCS7A01G377500 chr7B 94.525 3178 115 20 908 4065 511062278 511065416 0.000000e+00 4850
3 TraesCS7A01G377500 chr7B 90.155 193 5 2 310 502 511062023 511062201 5.250000e-59 239
4 TraesCS7A01G377500 chr7D 94.361 3139 106 28 908 3995 484361585 484364703 0.000000e+00 4750
5 TraesCS7A01G377500 chr7D 90.121 496 18 13 10 502 484361053 484361520 2.080000e-172 616
6 TraesCS7A01G377500 chr6D 76.490 1795 375 36 1286 3055 155542080 155543852 0.000000e+00 933
7 TraesCS7A01G377500 chr6B 76.379 1795 377 33 1286 3055 278539894 278541666 0.000000e+00 922
8 TraesCS7A01G377500 chr6A 76.156 1795 381 34 1286 3055 209267044 209268816 0.000000e+00 900


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G377500 chr7A 552678086 552682150 4064 False 3382.5 5832 100.000 1 4065 2 chr7A.!!$F1 4064
1 TraesCS7A01G377500 chr7B 511062023 511065416 3393 False 2544.5 4850 92.340 310 4065 2 chr7B.!!$F1 3755
2 TraesCS7A01G377500 chr7D 484361053 484364703 3650 False 2683.0 4750 92.241 10 3995 2 chr7D.!!$F1 3985
3 TraesCS7A01G377500 chr6D 155542080 155543852 1772 False 933.0 933 76.490 1286 3055 1 chr6D.!!$F1 1769
4 TraesCS7A01G377500 chr6B 278539894 278541666 1772 False 922.0 922 76.379 1286 3055 1 chr6B.!!$F1 1769
5 TraesCS7A01G377500 chr6A 209267044 209268816 1772 False 900.0 900 76.156 1286 3055 1 chr6A.!!$F1 1769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.178068 CCATCTAGACCACCAACCCG 59.822 60.000 0.0 0.0 0.00 5.28 F
237 238 0.540454 TCAGCATCTTCCTCAGCCTG 59.460 55.000 0.0 0.0 0.00 4.85 F
1156 1178 0.613260 TAGATGGCGGTCTGCTTGTT 59.387 50.000 3.1 0.0 45.43 2.83 F
1929 1963 1.069358 CCTCAAGGCTATCGGAAGGTC 59.931 57.143 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 1820 0.453793 CGGTGATGTCGAGCTTCTCT 59.546 55.0 0.00 0.00 0.00 3.10 R
1852 1886 1.376609 GCGTCTTCAAATCCGGGCAT 61.377 55.0 0.00 0.00 0.00 4.40 R
2971 3005 0.849417 GGAGATTGAGGCCCTCCAAT 59.151 55.0 17.46 15.44 44.42 3.16 R
3251 3288 0.185901 AAGGCTCAAGGAACAGGCAA 59.814 50.0 0.00 0.00 37.66 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.997672 TTTTTGCGGGGATTGTTGG 57.002 47.368 0.00 0.00 0.00 3.77
38 39 0.468214 TTTGCGGGGATTGTTGGTCA 60.468 50.000 0.00 0.00 0.00 4.02
68 69 4.381292 GCATGCTTGCTTCCCCATATATTC 60.381 45.833 16.80 0.00 45.77 1.75
73 74 5.335191 GCTTGCTTCCCCATATATTCTTTCG 60.335 44.000 0.00 0.00 0.00 3.46
112 113 0.178068 CCATCTAGACCACCAACCCG 59.822 60.000 0.00 0.00 0.00 5.28
149 150 7.974243 AAAGCAAGCATTTGAAATTTGAAAC 57.026 28.000 4.89 0.00 36.36 2.78
160 161 5.363939 TGAAATTTGAAACGAAAATGCCCT 58.636 33.333 0.00 0.00 0.00 5.19
193 194 9.589111 AAAAGCAAGCATTTGAAATTTGAAATT 57.411 22.222 12.22 0.00 36.36 1.82
194 195 9.589111 AAAGCAAGCATTTGAAATTTGAAATTT 57.411 22.222 15.10 15.10 36.36 1.82
206 207 5.981088 ATTTGAAATTTGAAAATGCCCCC 57.019 34.783 6.90 0.00 0.00 5.40
212 213 3.941704 TTTGAAAATGCCCCCAAAACT 57.058 38.095 0.00 0.00 0.00 2.66
236 237 1.509373 ATCAGCATCTTCCTCAGCCT 58.491 50.000 0.00 0.00 0.00 4.58
237 238 0.540454 TCAGCATCTTCCTCAGCCTG 59.460 55.000 0.00 0.00 0.00 4.85
238 239 0.540454 CAGCATCTTCCTCAGCCTGA 59.460 55.000 0.00 0.00 0.00 3.86
239 240 0.831966 AGCATCTTCCTCAGCCTGAG 59.168 55.000 14.99 14.99 43.91 3.35
254 255 1.143684 CCTGAGAGGGAGAGAGAGAGG 59.856 61.905 0.00 0.00 0.00 3.69
260 261 0.996762 GGGAGAGAGAGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
262 263 1.133482 GGAGAGAGAGAGGGAGGGAAG 60.133 61.905 0.00 0.00 0.00 3.46
399 400 4.853142 CCTCCCCGACCCCGATGA 62.853 72.222 0.00 0.00 38.22 2.92
400 401 2.524394 CTCCCCGACCCCGATGAT 60.524 66.667 0.00 0.00 38.22 2.45
401 402 2.842462 TCCCCGACCCCGATGATG 60.842 66.667 0.00 0.00 38.22 3.07
402 403 2.842462 CCCCGACCCCGATGATGA 60.842 66.667 0.00 0.00 38.22 2.92
403 404 2.737180 CCCGACCCCGATGATGAG 59.263 66.667 0.00 0.00 38.22 2.90
404 405 1.832608 CCCGACCCCGATGATGAGA 60.833 63.158 0.00 0.00 38.22 3.27
405 406 1.188219 CCCGACCCCGATGATGAGAT 61.188 60.000 0.00 0.00 38.22 2.75
406 407 0.681733 CCGACCCCGATGATGAGATT 59.318 55.000 0.00 0.00 38.22 2.40
407 408 1.606480 CCGACCCCGATGATGAGATTG 60.606 57.143 0.00 0.00 38.22 2.67
408 409 1.341209 CGACCCCGATGATGAGATTGA 59.659 52.381 0.00 0.00 38.22 2.57
458 459 2.644992 CAAGTTGGGCGAGCAACC 59.355 61.111 0.00 0.00 32.13 3.77
494 495 1.942657 CCGCACCATCCACATAAGAAG 59.057 52.381 0.00 0.00 0.00 2.85
495 496 2.419990 CCGCACCATCCACATAAGAAGA 60.420 50.000 0.00 0.00 0.00 2.87
502 503 4.567537 CCATCCACATAAGAAGAACCACCA 60.568 45.833 0.00 0.00 0.00 4.17
504 505 3.081804 CCACATAAGAAGAACCACCACC 58.918 50.000 0.00 0.00 0.00 4.61
1047 1048 2.418083 GCAAGGGCCCCGAATTGAG 61.418 63.158 21.43 0.14 0.00 3.02
1060 1061 5.121811 CCCGAATTGAGATTGAGATTGAGT 58.878 41.667 0.00 0.00 0.00 3.41
1061 1062 5.236047 CCCGAATTGAGATTGAGATTGAGTC 59.764 44.000 0.00 0.00 0.00 3.36
1090 1095 1.521681 GTTTCGCCGGAGATCTGGG 60.522 63.158 9.30 1.97 42.72 4.45
1099 1121 1.212935 CGGAGATCTGGGGGATTTTGT 59.787 52.381 0.00 0.00 34.33 2.83
1104 1126 2.785357 TCTGGGGGATTTTGTTGGTT 57.215 45.000 0.00 0.00 0.00 3.67
1105 1127 3.053359 TCTGGGGGATTTTGTTGGTTT 57.947 42.857 0.00 0.00 0.00 3.27
1127 1149 2.098934 GGTGTGCTGATTTTGTGTGTGA 59.901 45.455 0.00 0.00 0.00 3.58
1156 1178 0.613260 TAGATGGCGGTCTGCTTGTT 59.387 50.000 3.10 0.00 45.43 2.83
1168 1190 2.750350 CTTGTTCTGGACCCGGCT 59.250 61.111 0.00 0.00 0.00 5.52
1852 1886 3.838271 GTCGCCATCGCTCAGGGA 61.838 66.667 0.00 0.00 35.26 4.20
1929 1963 1.069358 CCTCAAGGCTATCGGAAGGTC 59.931 57.143 0.00 0.00 0.00 3.85
2413 2447 2.045536 CTCCTGAACTGCAGCCCC 60.046 66.667 15.27 3.47 43.50 5.80
2551 2585 4.087892 ACCGATGCGAGCTTGGCT 62.088 61.111 11.37 0.00 43.88 4.75
2632 2666 2.506472 GACGATGGCCTCCTTCCC 59.494 66.667 3.32 0.00 0.00 3.97
2660 2694 3.070159 CAGGAGTTCTGAAAGTGGTCTGA 59.930 47.826 0.00 0.00 46.18 3.27
2873 2907 1.234821 CTATGGTGTTGCGGTGTTGT 58.765 50.000 0.00 0.00 0.00 3.32
3135 3172 0.031449 GCCTCATAGCAGAGTCGGTC 59.969 60.000 0.00 0.00 33.75 4.79
3448 3489 2.441375 TCCAGAGTTTGTGGGACATCAA 59.559 45.455 0.00 0.00 44.52 2.57
3521 3564 0.966179 TGCCTGTCGTAGAAGCTTGA 59.034 50.000 2.10 0.00 39.69 3.02
3600 3643 3.648067 TGTTCCAGTTCCAGTCTCTTCAT 59.352 43.478 0.00 0.00 0.00 2.57
3848 3904 5.482175 TGGGATAAATTTGTTTCCGTCCAAT 59.518 36.000 0.00 0.00 0.00 3.16
3893 3950 6.147492 TGCAACCTTGTGATTTTATGAATTGC 59.853 34.615 0.00 0.00 38.37 3.56
3922 3980 6.455647 TCCTTGTACTGTGTCTAAATGTCTG 58.544 40.000 0.00 0.00 0.00 3.51
3923 3981 6.041637 TCCTTGTACTGTGTCTAAATGTCTGT 59.958 38.462 0.00 0.00 0.00 3.41
3924 3982 6.146184 CCTTGTACTGTGTCTAAATGTCTGTG 59.854 42.308 0.00 0.00 0.00 3.66
3941 3999 2.142761 TGATATGGCCGGAGCTGCT 61.143 57.895 5.05 0.00 39.73 4.24
3942 4000 1.670406 GATATGGCCGGAGCTGCTG 60.670 63.158 7.01 0.00 39.73 4.41
3995 4058 1.827789 GCCACCCTTGACAACTGCA 60.828 57.895 0.00 0.00 0.00 4.41
3999 4062 1.955778 CACCCTTGACAACTGCATGAA 59.044 47.619 0.00 0.00 0.00 2.57
4018 4081 8.476447 TGCATGAAATATATTTTTGGCTCTGAA 58.524 29.630 11.92 0.00 0.00 3.02
4019 4082 9.485206 GCATGAAATATATTTTTGGCTCTGAAT 57.515 29.630 11.92 0.00 0.00 2.57
4027 4090 4.669206 TTTTGGCTCTGAATTTTGCTGA 57.331 36.364 0.00 0.00 0.00 4.26
4028 4091 4.669206 TTTGGCTCTGAATTTTGCTGAA 57.331 36.364 0.00 0.00 0.00 3.02
4029 4092 4.877378 TTGGCTCTGAATTTTGCTGAAT 57.123 36.364 0.00 0.00 0.00 2.57
4030 4093 4.445452 TGGCTCTGAATTTTGCTGAATC 57.555 40.909 0.00 0.00 0.00 2.52
4031 4094 3.119743 TGGCTCTGAATTTTGCTGAATCG 60.120 43.478 0.00 0.00 0.00 3.34
4032 4095 3.119708 GGCTCTGAATTTTGCTGAATCGT 60.120 43.478 0.00 0.00 0.00 3.73
4033 4096 4.094887 GGCTCTGAATTTTGCTGAATCGTA 59.905 41.667 0.00 0.00 0.00 3.43
4035 4098 6.261118 GCTCTGAATTTTGCTGAATCGTATT 58.739 36.000 0.00 0.00 0.00 1.89
4052 4119 6.252967 TCGTATTGCTGATTGAAACAACAT 57.747 33.333 0.00 0.00 0.00 2.71
4058 4125 3.438781 GCTGATTGAAACAACATCCGGTA 59.561 43.478 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.069358 GACCAACAATCCCCGCAAAAA 59.931 47.619 0.00 0.00 0.00 1.94
18 19 0.676736 GACCAACAATCCCCGCAAAA 59.323 50.000 0.00 0.00 0.00 2.44
19 20 0.468214 TGACCAACAATCCCCGCAAA 60.468 50.000 0.00 0.00 0.00 3.68
20 21 0.251564 ATGACCAACAATCCCCGCAA 60.252 50.000 0.00 0.00 0.00 4.85
21 22 0.621082 TATGACCAACAATCCCCGCA 59.379 50.000 0.00 0.00 0.00 5.69
73 74 1.511254 GTTGCGGTTTCGGCGATTC 60.511 57.895 11.76 6.87 36.79 2.52
112 113 5.482686 TGCTTGCTTTTGAAAATTGAACC 57.517 34.783 0.00 0.00 0.00 3.62
149 150 5.007136 TGCTTTTGTTTTTAGGGCATTTTCG 59.993 36.000 0.00 0.00 0.00 3.46
160 161 9.852091 AATTTCAAATGCTTGCTTTTGTTTTTA 57.148 22.222 23.59 9.57 35.01 1.52
193 194 2.105649 GGAGTTTTGGGGGCATTTTCAA 59.894 45.455 0.00 0.00 0.00 2.69
194 195 1.696884 GGAGTTTTGGGGGCATTTTCA 59.303 47.619 0.00 0.00 0.00 2.69
206 207 5.047519 AGGAAGATGCTGATTTGGAGTTTTG 60.048 40.000 0.00 0.00 0.00 2.44
212 213 3.882444 CTGAGGAAGATGCTGATTTGGA 58.118 45.455 0.00 0.00 0.00 3.53
236 237 1.221635 CCCTCTCTCTCTCCCTCTCA 58.778 60.000 0.00 0.00 0.00 3.27
237 238 1.421646 CTCCCTCTCTCTCTCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
238 239 1.522900 CTCCCTCTCTCTCTCCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
239 240 0.478507 CCTCCCTCTCTCTCTCCCTC 59.521 65.000 0.00 0.00 0.00 4.30
240 241 0.998945 CCCTCCCTCTCTCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
241 242 0.996762 TCCCTCCCTCTCTCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
242 243 0.930726 TTCCCTCCCTCTCTCTCTCC 59.069 60.000 0.00 0.00 0.00 3.71
243 244 1.850345 TCTTCCCTCCCTCTCTCTCTC 59.150 57.143 0.00 0.00 0.00 3.20
244 245 1.994399 TCTTCCCTCCCTCTCTCTCT 58.006 55.000 0.00 0.00 0.00 3.10
245 246 2.838637 TTCTTCCCTCCCTCTCTCTC 57.161 55.000 0.00 0.00 0.00 3.20
246 247 3.569135 TTTTCTTCCCTCCCTCTCTCT 57.431 47.619 0.00 0.00 0.00 3.10
391 392 2.896044 TCTCTCAATCTCATCATCGGGG 59.104 50.000 0.00 0.00 0.00 5.73
392 393 4.804868 ATCTCTCAATCTCATCATCGGG 57.195 45.455 0.00 0.00 0.00 5.14
393 394 5.780984 TGAATCTCTCAATCTCATCATCGG 58.219 41.667 0.00 0.00 0.00 4.18
394 395 7.599245 TCAATGAATCTCTCAATCTCATCATCG 59.401 37.037 0.00 0.00 37.67 3.84
395 396 8.834749 TCAATGAATCTCTCAATCTCATCATC 57.165 34.615 0.00 0.00 37.67 2.92
396 397 9.800572 ATTCAATGAATCTCTCAATCTCATCAT 57.199 29.630 2.07 0.00 37.67 2.45
397 398 9.274206 GATTCAATGAATCTCTCAATCTCATCA 57.726 33.333 24.29 0.00 43.39 3.07
398 399 8.723311 GGATTCAATGAATCTCTCAATCTCATC 58.277 37.037 28.44 9.30 45.30 2.92
399 400 7.666388 GGGATTCAATGAATCTCTCAATCTCAT 59.334 37.037 28.44 0.00 43.81 2.90
400 401 6.996879 GGGATTCAATGAATCTCTCAATCTCA 59.003 38.462 28.44 0.00 43.81 3.27
401 402 6.147492 CGGGATTCAATGAATCTCTCAATCTC 59.853 42.308 27.31 12.45 44.68 2.75
402 403 5.996513 CGGGATTCAATGAATCTCTCAATCT 59.003 40.000 27.31 0.00 44.68 2.40
403 404 5.180868 CCGGGATTCAATGAATCTCTCAATC 59.819 44.000 27.31 13.62 44.68 2.67
404 405 5.068636 CCGGGATTCAATGAATCTCTCAAT 58.931 41.667 27.31 0.00 44.68 2.57
405 406 4.454678 CCGGGATTCAATGAATCTCTCAA 58.545 43.478 27.31 0.00 44.68 3.02
406 407 3.745480 GCCGGGATTCAATGAATCTCTCA 60.745 47.826 27.31 0.00 44.68 3.27
407 408 2.810852 GCCGGGATTCAATGAATCTCTC 59.189 50.000 27.31 17.62 44.68 3.20
408 409 2.173356 TGCCGGGATTCAATGAATCTCT 59.827 45.455 27.31 0.46 44.68 3.10
913 914 2.809601 CGAGCGAACGAACCCTGG 60.810 66.667 0.00 0.00 35.09 4.45
1047 1048 4.436584 CCGCACAAAGACTCAATCTCAATC 60.437 45.833 0.00 0.00 36.27 2.67
1090 1095 3.202097 CACACCAAACCAACAAAATCCC 58.798 45.455 0.00 0.00 0.00 3.85
1099 1121 3.055530 ACAAAATCAGCACACCAAACCAA 60.056 39.130 0.00 0.00 0.00 3.67
1104 1126 2.495270 ACACACAAAATCAGCACACCAA 59.505 40.909 0.00 0.00 0.00 3.67
1105 1127 2.098614 ACACACAAAATCAGCACACCA 58.901 42.857 0.00 0.00 0.00 4.17
1127 1149 2.747446 GACCGCCATCTACACAAACAAT 59.253 45.455 0.00 0.00 0.00 2.71
1174 1196 3.554692 CTCACGCCGCCGAACATC 61.555 66.667 0.00 0.00 38.29 3.06
1432 1454 3.417275 CTTGATCTCGGAGGCGCGT 62.417 63.158 8.43 0.27 0.00 6.01
1786 1820 0.453793 CGGTGATGTCGAGCTTCTCT 59.546 55.000 0.00 0.00 0.00 3.10
1852 1886 1.376609 GCGTCTTCAAATCCGGGCAT 61.377 55.000 0.00 0.00 0.00 4.40
1924 1958 1.377994 CAGCTTGGAGCAGGACCTT 59.622 57.895 2.47 0.00 45.56 3.50
2203 2237 2.284625 TCGGTGACTCCTGGGCAT 60.285 61.111 0.00 0.00 34.28 4.40
2413 2447 5.236047 CACCAAAGAGAGAGTCTTGAACTTG 59.764 44.000 0.00 0.00 45.44 3.16
2576 2610 2.354103 CGCTCAGGTCAAGATTCTCCAA 60.354 50.000 0.00 0.00 0.00 3.53
2605 2639 2.880879 CCATCGTCGGTGACTGCG 60.881 66.667 7.17 2.58 0.00 5.18
2647 2681 5.239306 GTCAACATGAATCAGACCACTTTCA 59.761 40.000 0.00 0.00 30.68 2.69
2656 2690 6.005823 ACCATTCAAGTCAACATGAATCAGA 58.994 36.000 9.89 0.00 40.85 3.27
2660 2694 5.232463 GCAACCATTCAAGTCAACATGAAT 58.768 37.500 0.00 7.57 42.76 2.57
2971 3005 0.849417 GGAGATTGAGGCCCTCCAAT 59.151 55.000 17.46 15.44 44.42 3.16
3251 3288 0.185901 AAGGCTCAAGGAACAGGCAA 59.814 50.000 0.00 0.00 37.66 4.52
3448 3489 7.118723 TGCTATGGAATTGAAACCAGAAGTAT 58.881 34.615 0.00 0.00 39.62 2.12
3600 3643 1.472552 GCACACACACACTACAGACCA 60.473 52.381 0.00 0.00 0.00 4.02
3848 3904 7.308951 GGTTGCAGGTAAGTAAAAGCATAGAAA 60.309 37.037 0.00 0.00 0.00 2.52
3893 3950 8.088981 ACATTTAGACACAGTACAAGGAAGTAG 58.911 37.037 0.00 0.00 0.00 2.57
3922 3980 1.963338 GCAGCTCCGGCCATATCAC 60.963 63.158 2.24 0.00 39.73 3.06
3923 3981 2.142761 AGCAGCTCCGGCCATATCA 61.143 57.895 2.24 0.00 39.73 2.15
3924 3982 1.670406 CAGCAGCTCCGGCCATATC 60.670 63.158 2.24 0.00 39.73 1.63
3941 3999 1.151221 AGTGGTGGCATCAAGCACA 59.849 52.632 0.00 0.00 46.07 4.57
3999 4062 9.895138 AGCAAAATTCAGAGCCAAAAATATATT 57.105 25.926 0.00 0.00 0.00 1.28
4009 4072 3.119743 CGATTCAGCAAAATTCAGAGCCA 60.120 43.478 0.00 0.00 0.00 4.75
4018 4081 5.565592 TCAGCAATACGATTCAGCAAAAT 57.434 34.783 0.00 0.00 0.00 1.82
4019 4082 5.565592 ATCAGCAATACGATTCAGCAAAA 57.434 34.783 0.00 0.00 0.00 2.44
4020 4083 5.123661 TCAATCAGCAATACGATTCAGCAAA 59.876 36.000 0.00 0.00 29.38 3.68
4021 4084 4.635324 TCAATCAGCAATACGATTCAGCAA 59.365 37.500 0.00 0.00 29.38 3.91
4023 4086 4.801147 TCAATCAGCAATACGATTCAGC 57.199 40.909 0.00 0.00 29.38 4.26
4024 4087 6.545508 TGTTTCAATCAGCAATACGATTCAG 58.454 36.000 0.00 0.00 29.38 3.02
4027 4090 6.676950 TGTTGTTTCAATCAGCAATACGATT 58.323 32.000 0.00 0.00 32.04 3.34
4028 4091 6.252967 TGTTGTTTCAATCAGCAATACGAT 57.747 33.333 0.00 0.00 0.00 3.73
4029 4092 5.681337 TGTTGTTTCAATCAGCAATACGA 57.319 34.783 0.00 0.00 0.00 3.43
4030 4093 5.512788 GGATGTTGTTTCAATCAGCAATACG 59.487 40.000 0.00 0.00 30.76 3.06
4031 4094 5.512788 CGGATGTTGTTTCAATCAGCAATAC 59.487 40.000 0.00 0.00 30.76 1.89
4032 4095 5.392919 CCGGATGTTGTTTCAATCAGCAATA 60.393 40.000 0.00 0.00 30.76 1.90
4033 4096 4.487948 CGGATGTTGTTTCAATCAGCAAT 58.512 39.130 0.00 0.00 30.76 3.56
4035 4098 2.228582 CCGGATGTTGTTTCAATCAGCA 59.771 45.455 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.