AutoCloner

Multiple sequence alignment - TraesCS7A01G377300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G377300	chr7A	100.000	2621	0	0	1	2621	551539097	551541717	0.000000e+00	4841.0
1	TraesCS7A01G377300	chr7A	93.624	298	19	0	1	298	551511649	551511946	1.850000e-121	446.0
2	TraesCS7A01G377300	chr7A	82.970	505	66	10	2137	2621	616442402	616442906	3.100000e-119	438.0
3	TraesCS7A01G377300	chr7A	82.892	491	69	8	2144	2621	615787427	615786939	6.700000e-116	427.0
4	TraesCS7A01G377300	chr7D	91.981	2145	91	30	1	2118	484067610	484069700	0.000000e+00	2933.0
5	TraesCS7A01G377300	chr7D	84.113	919	76	34	800	1698	489299303	489300171	0.000000e+00	824.0
6	TraesCS7A01G377300	chr7D	94.087	389	20	2	2236	2621	484070282	484070670	2.910000e-164	588.0
7	TraesCS7A01G377300	chr7D	90.284	422	36	4	2203	2621	489300426	489300845	4.930000e-152	547.0
8	TraesCS7A01G377300	chr7D	91.406	128	10	1	2109	2235	484070078	484070205	9.640000e-40	174.0
9	TraesCS7A01G377300	chr7B	90.479	1544	74	30	486	2000	509732218	509733717	0.000000e+00	1969.0
10	TraesCS7A01G377300	chr7B	88.889	423	41	5	2203	2621	517931857	517932277	1.390000e-142	516.0
11	TraesCS7A01G377300	chr7B	86.383	470	57	5	2156	2621	509735101	509735567	8.370000e-140	507.0
12	TraesCS7A01G377300	chr7B	86.147	462	48	7	1126	1576	517930922	517931378	3.920000e-133	484.0
13	TraesCS7A01G377300	chr7B	88.716	257	19	3	1774	2028	517931604	517931852	3.280000e-79	305.0
14	TraesCS7A01G377300	chr7B	91.538	130	10	1	1512	1641	517931394	517931522	7.450000e-41	178.0
15	TraesCS7A01G377300	chr7B	75.581	344	65	17	7	341	233025061	233025394	4.520000e-33	152.0
16	TraesCS7A01G377300	chrUn	86.224	392	50	3	2233	2621	277362713	277362323	3.120000e-114	422.0
17	TraesCS7A01G377300	chrUn	79.730	148	23	4	18	162	178475010	178475153	1.660000e-17	100.0
18	TraesCS7A01G377300	chrUn	79.730	148	23	4	18	162	178509941	178510084	1.660000e-17	100.0
19	TraesCS7A01G377300	chrUn	79.730	148	23	4	18	162	369560426	369560283	1.660000e-17	100.0
20	TraesCS7A01G377300	chr2B	83.478	460	64	9	2167	2621	142297534	142297082	4.030000e-113	418.0
21	TraesCS7A01G377300	chr2B	77.473	182	31	7	18	194	30210469	30210293	1.660000e-17	100.0
22	TraesCS7A01G377300	chr2B	79.730	148	23	4	18	162	30231455	30231312	1.660000e-17	100.0
23	TraesCS7A01G377300	chr2B	76.374	182	33	7	18	194	30175237	30175061	3.590000e-14	89.8
24	TraesCS7A01G377300	chr6D	83.120	468	61	13	2163	2621	430750373	430750831	6.750000e-111	411.0
25	TraesCS7A01G377300	chr3A	78.587	467	63	17	22	462	30343355	30343810	9.240000e-70	274.0
26	TraesCS7A01G377300	chr4A	81.818	275	23	14	1207	1460	30286991	30287259	3.420000e-49	206.0
27	TraesCS7A01G377300	chr5D	77.690	381	49	29	1130	1483	394163293	394162922	1.590000e-47	200.0
28	TraesCS7A01G377300	chr5A	77.654	358	47	24	1125	1455	496135206	496134855	1.240000e-43	187.0
29	TraesCS7A01G377300	chr4D	78.016	373	31	22	1132	1459	437818856	437818490	1.240000e-43	187.0
30	TraesCS7A01G377300	chr4B	77.568	370	32	20	1135	1459	540726444	540726081	2.680000e-40	176.0
31	TraesCS7A01G377300	chr5B	76.302	384	57	24	1126	1483	474047940	474047565	9.640000e-40	174.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G377300	chr7A	551539097	551541717	2620	False	4841.000000	4841	100.000000	1	2621	1	chr7A.!!$F2	2620
1	TraesCS7A01G377300	chr7A	616442402	616442906	504	False	438.000000	438	82.970000	2137	2621	1	chr7A.!!$F3	484
2	TraesCS7A01G377300	chr7D	484067610	484070670	3060	False	1231.666667	2933	92.491333	1	2621	3	chr7D.!!$F1	2620
3	TraesCS7A01G377300	chr7D	489299303	489300845	1542	False	685.500000	824	87.198500	800	2621	2	chr7D.!!$F2	1821
4	TraesCS7A01G377300	chr7B	509732218	509735567	3349	False	1238.000000	1969	88.431000	486	2621	2	chr7B.!!$F2	2135
5	TraesCS7A01G377300	chr7B	517930922	517932277	1355	False	370.750000	516	88.822500	1126	2621	4	chr7B.!!$F3	1495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
255	257	2.103537	AGCTTCATTTTTGCCATGGC	57.896	45.0	30.54	30.54	42.35	4.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2179	3898	0.037303	ATATGGATTCGCCTGGCTGG	59.963	55.0	17.92	5.98	37.63	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
115	117	5.415415	TTTCGTTTTCCATGGCAAATTTG	57.585	34.783	12.82	14.03	0.00	2.32
132	134	7.179927	CAAATTTGCTTTCATTGACATGACA	57.820	32.000	5.01	0.00	39.28	3.58
133	135	7.631822	CAAATTTGCTTTCATTGACATGACAA	58.368	30.769	12.85	12.85	39.28	3.18
134	136	7.789273	AATTTGCTTTCATTGACATGACAAA	57.211	28.000	14.36	0.00	39.28	2.83
135	137	7.972832	ATTTGCTTTCATTGACATGACAAAT	57.027	28.000	14.36	1.08	39.28	2.32
136	138	7.789273	TTTGCTTTCATTGACATGACAAATT	57.211	28.000	14.36	0.00	39.28	1.82
137	139	7.789273	TTGCTTTCATTGACATGACAAATTT	57.211	28.000	14.36	0.00	39.28	1.82
163	165	7.951591	ACTTCAAAGTACATGGCAAACTTTAT	58.048	30.769	19.23	8.28	40.52	1.40
176	178	8.137210	TGGCAAACTTTATTTCTTACTTTTGC	57.863	30.769	7.08	7.08	44.31	3.68
181	183	9.959749	AAACTTTATTTCTTACTTTTGCGATGA	57.040	25.926	0.00	0.00	0.00	2.92
217	219	9.918630	CTTCATTGTCATGGAGAATTTAACTTT	57.081	29.630	0.00	0.00	38.22	2.66
255	257	2.103537	AGCTTCATTTTTGCCATGGC	57.896	45.000	30.54	30.54	42.35	4.40
275	277	6.154203	TGGCATTTTTGACTTCAACATACA	57.846	33.333	0.00	0.00	35.28	2.29
280	282	6.449635	TTTTTGACTTCAACATACACTGCT	57.550	33.333	0.00	0.00	35.28	4.24
325	327	9.028185	ACGTATCGTTTGGTAATCTTTCTTATC	57.972	33.333	0.00	0.00	36.35	1.75
397	400	9.672673	TTTGGGATTTTGTTTCTGTTTTTGATA	57.327	25.926	0.00	0.00	0.00	2.15
427	430	3.788672	TGCAACCCGGCAAAATTTT	57.211	42.105	0.00	0.00	41.65	1.82
519	523	4.094911	CGCAGCGTTGAAAGCATATTTTA	58.905	39.130	6.65	0.00	37.01	1.52
545	549	9.601217	AGTTTATACTCCACACAAGATAATCAC	57.399	33.333	0.00	0.00	0.00	3.06
632	636	2.558313	GTGCAGCAAGGAAGCGAC	59.442	61.111	0.00	0.00	40.15	5.19
981	1000	3.779444	TGCTTCTCTTCTTCTCCACCTA	58.221	45.455	0.00	0.00	0.00	3.08
1109	1142	6.349300	AGTTTGAAGTTTCTAACTCAGCTGA	58.651	36.000	17.19	17.19	45.50	4.26
1528	1651	1.291132	GGCTCAGTATGGTTCGAAGC	58.709	55.000	20.13	20.13	36.16	3.86
1557	1682	3.665190	ACTTTCTCTTTGGTCGGATGAC	58.335	45.455	0.00	0.00	44.72	3.06
1560	1685	1.413767	CTCTTTGGTCGGATGACGCG	61.414	60.000	3.53	3.53	46.49	6.01
1636	1761	1.538047	CTGAACACTTGTGGATGGGG	58.462	55.000	5.72	0.00	0.00	4.96
1656	1781	1.513586	GCTTTGCTGCATGCTCGTC	60.514	57.895	20.33	5.73	43.37	4.20
1665	1790	1.089920	GCATGCTCGTCCTTGACAAT	58.910	50.000	11.37	0.00	32.09	2.71
1666	1791	1.470098	GCATGCTCGTCCTTGACAATT	59.530	47.619	11.37	0.00	32.09	2.32
1698	1827	2.416244	GATCGGCCGGTCGAATGCTA	62.416	60.000	37.18	12.31	42.69	3.49
1699	1828	2.421877	ATCGGCCGGTCGAATGCTAG	62.422	60.000	37.18	0.00	42.69	3.42
1700	1829	2.967615	GGCCGGTCGAATGCTAGC	60.968	66.667	8.10	8.10	0.00	3.42
1701	1830	2.107141	GCCGGTCGAATGCTAGCT	59.893	61.111	17.23	0.00	0.00	3.32
1702	1831	2.240500	GCCGGTCGAATGCTAGCTG	61.241	63.158	17.23	3.43	0.00	4.24
1703	1832	1.141881	CCGGTCGAATGCTAGCTGT	59.858	57.895	17.23	3.03	0.00	4.40
1704	1833	1.148157	CCGGTCGAATGCTAGCTGTG	61.148	60.000	17.23	3.43	0.00	3.66
1705	1834	0.458543	CGGTCGAATGCTAGCTGTGT	60.459	55.000	17.23	0.00	0.00	3.72
1706	1835	1.002366	GGTCGAATGCTAGCTGTGTG	58.998	55.000	17.23	2.32	0.00	3.82
1707	1836	1.673033	GGTCGAATGCTAGCTGTGTGT	60.673	52.381	17.23	0.00	0.00	3.72
1708	1837	2.069273	GTCGAATGCTAGCTGTGTGTT	58.931	47.619	17.23	1.33	0.00	3.32
1709	1838	2.480419	GTCGAATGCTAGCTGTGTGTTT	59.520	45.455	17.23	0.00	0.00	2.83
1730	1862	8.162245	GTGTTTTGTTTTGTTTTGTGATCTCTC	58.838	33.333	0.00	0.00	0.00	3.20
1731	1863	7.330700	TGTTTTGTTTTGTTTTGTGATCTCTCC	59.669	33.333	0.00	0.00	0.00	3.71
1743	1875	2.564504	TGATCTCTCCGGCTGATTATGG	59.435	50.000	0.00	0.00	0.00	2.74
1760	1892	7.930217	TGATTATGGCTTGTAATGCTTTCTAC	58.070	34.615	0.00	0.00	37.15	2.59
1761	1893	7.775093	TGATTATGGCTTGTAATGCTTTCTACT	59.225	33.333	0.00	0.00	37.15	2.57
1762	1894	9.273016	GATTATGGCTTGTAATGCTTTCTACTA	57.727	33.333	0.00	0.00	37.15	1.82
1763	1895	8.662781	TTATGGCTTGTAATGCTTTCTACTAG	57.337	34.615	0.00	0.00	37.15	2.57
1783	1915	7.964604	ACTAGCTACTAGTTTTTGTTTCCAG	57.035	36.000	0.00	0.00	43.82	3.86
1802	1936	0.517316	GCGCAAGTTGTACTCCAAGG	59.483	55.000	0.30	0.00	41.68	3.61
1836	1983	2.759973	TCTCGTGCCTAGGCTGGG	60.760	66.667	33.07	24.77	42.51	4.45
1851	1998	2.436646	GGGCTGGGTCGATGTGTG	60.437	66.667	0.00	0.00	0.00	3.82
1906	2091	0.109597	GTTCGTGGCAAGCAATCTGG	60.110	55.000	0.00	0.00	0.00	3.86
2051	2238	5.051891	TGTACTCTTACCGTCAAAGTAGC	57.948	43.478	0.00	0.00	0.00	3.58
2056	2243	3.068448	TCTTACCGTCAAAGTAGCACACA	59.932	43.478	0.00	0.00	0.00	3.72
2058	2245	1.134640	ACCGTCAAAGTAGCACACACA	60.135	47.619	0.00	0.00	0.00	3.72
2093	2324	6.603201	GGATACCCACAAATGAAAGATGAAGA	59.397	38.462	0.00	0.00	0.00	2.87
2142	3043	7.127339	AGCCCATTCTTCTTAGGACTACATAAA	59.873	37.037	0.00	0.00	0.00	1.40
2161	3880	1.616159	AATAAACTGCCGCACCTGTT	58.384	45.000	0.00	0.00	0.00	3.16
2179	3898	0.380378	TTCAGCAGAAACCGTGCAAC	59.620	50.000	0.00	0.00	43.82	4.17
2204	3923	3.364964	GCCAGGCGAATCCATATTTAACG	60.365	47.826	0.00	0.00	37.29	3.18
2263	4069	9.444600	GGTTACTTCTATCACCAATTAAACAGA	57.555	33.333	0.00	0.00	0.00	3.41
2309	4115	8.190122	TGATCAAACGCATAGATTAAAGCAAAT	58.810	29.630	0.00	0.00	0.00	2.32
2353	4161	8.791675	TGTTCACATTTAGAAATGATAGCAACA	58.208	29.630	19.31	15.12	46.72	3.33

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	9.630098	GATAGGAAAATATTGCCATGTATGTTG	57.370	33.333	9.54	0.00	0.00	3.33
115	117	8.524870	AGTAAATTTGTCATGTCAATGAAAGC	57.475	30.769	6.21	0.00	44.40	3.51
123	125	9.944663	GTACTTTGAAGTAAATTTGTCATGTCA	57.055	29.630	0.00	0.00	42.66	3.58
124	126	9.944663	TGTACTTTGAAGTAAATTTGTCATGTC	57.055	29.630	0.00	0.00	42.66	3.06
127	129	9.912634	CCATGTACTTTGAAGTAAATTTGTCAT	57.087	29.630	0.00	1.40	42.66	3.06
128	130	7.865385	GCCATGTACTTTGAAGTAAATTTGTCA	59.135	33.333	0.00	0.00	42.66	3.58
129	131	7.865385	TGCCATGTACTTTGAAGTAAATTTGTC	59.135	33.333	0.00	0.00	42.66	3.18
130	132	7.721402	TGCCATGTACTTTGAAGTAAATTTGT	58.279	30.769	0.00	0.00	42.66	2.83
131	133	8.586570	TTGCCATGTACTTTGAAGTAAATTTG	57.413	30.769	0.00	1.90	42.66	2.32
132	134	9.040939	GTTTGCCATGTACTTTGAAGTAAATTT	57.959	29.630	5.24	0.00	42.66	1.82
133	135	8.421002	AGTTTGCCATGTACTTTGAAGTAAATT	58.579	29.630	5.24	0.00	42.66	1.82
134	136	7.951591	AGTTTGCCATGTACTTTGAAGTAAAT	58.048	30.769	5.24	3.30	42.66	1.40
135	137	7.341445	AGTTTGCCATGTACTTTGAAGTAAA	57.659	32.000	5.24	0.96	42.66	2.01
136	138	6.952773	AGTTTGCCATGTACTTTGAAGTAA	57.047	33.333	5.24	0.00	42.66	2.24
137	139	6.952773	AAGTTTGCCATGTACTTTGAAGTA	57.047	33.333	0.00	0.00	40.37	2.24
146	148	9.908152	AAGTAAGAAATAAAGTTTGCCATGTAC	57.092	29.630	0.00	0.00	0.00	2.90
163	165	6.801539	AGATGTCATCGCAAAAGTAAGAAA	57.198	33.333	7.18	0.00	0.00	2.52
176	178	4.633126	ACAATGAAGGTGAAGATGTCATCG	59.367	41.667	7.18	0.00	42.76	3.84
181	183	4.703575	CCATGACAATGAAGGTGAAGATGT	59.296	41.667	0.00	0.00	35.67	3.06
217	219	8.359875	TGAAGCTTTATTTCCCATGTCAAATA	57.640	30.769	0.00	0.00	0.00	1.40
255	257	6.919662	AGCAGTGTATGTTGAAGTCAAAAATG	59.080	34.615	0.00	0.00	37.63	2.32
304	306	7.894376	AACGATAAGAAAGATTACCAAACGA	57.106	32.000	0.00	0.00	0.00	3.85
325	327	8.167985	CCATTAAATTTCCATTGCACTAAAACG	58.832	33.333	0.00	0.00	0.00	3.60
427	430	5.857471	ATGCTTGCCATTATCAAAAGCTA	57.143	34.783	7.17	0.00	42.87	3.32
466	469	7.176515	GCAAATATTTTGGACCCCAAGAATTTT	59.823	33.333	0.00	0.00	44.84	1.82
519	523	9.601217	GTGATTATCTTGTGTGGAGTATAAACT	57.399	33.333	0.00	0.00	39.21	2.66
611	615	1.878775	GCTTCCTTGCTGCACGATT	59.121	52.632	7.80	0.00	0.00	3.34
845	862	2.131023	GAGAATGGGAATGGGAGGAGT	58.869	52.381	0.00	0.00	0.00	3.85
998	1031	3.189287	GCACTTGACACTTACCTCCATTG	59.811	47.826	0.00	0.00	0.00	2.82
999	1032	3.412386	GCACTTGACACTTACCTCCATT	58.588	45.455	0.00	0.00	0.00	3.16
1109	1142	2.556622	CCGAAACCACCAAATGCTTAGT	59.443	45.455	0.00	0.00	0.00	2.24
1238	1271	4.059459	GAACCACACGTCGCTGCG	62.059	66.667	17.25	17.25	37.94	5.18
1528	1651	2.072298	CCAAAGAGAAAGTCAGCTCCG	58.928	52.381	0.00	0.00	0.00	4.63
1557	1682	0.667487	TCCTCTTCTGCAGAAACGCG	60.667	55.000	28.16	17.28	33.07	6.01
1560	1685	1.003003	AGGCTCCTCTTCTGCAGAAAC	59.997	52.381	28.16	13.78	33.07	2.78
1656	1781	5.105473	TCGGTCTACTCCTTAATTGTCAAGG	60.105	44.000	0.00	0.00	43.40	3.61
1665	1790	1.952296	GCCGATCGGTCTACTCCTTAA	59.048	52.381	33.33	0.00	37.65	1.85
1666	1791	1.602311	GCCGATCGGTCTACTCCTTA	58.398	55.000	33.33	0.00	37.65	2.69
1698	1827	5.295540	ACAAAACAAAACAAAACACACAGCT	59.704	32.000	0.00	0.00	0.00	4.24
1699	1828	5.394904	CACAAAACAAAACAAAACACACAGC	59.605	36.000	0.00	0.00	0.00	4.40
1700	1829	6.709643	TCACAAAACAAAACAAAACACACAG	58.290	32.000	0.00	0.00	0.00	3.66
1701	1830	6.662414	TCACAAAACAAAACAAAACACACA	57.338	29.167	0.00	0.00	0.00	3.72
1702	1831	7.571892	AGATCACAAAACAAAACAAAACACAC	58.428	30.769	0.00	0.00	0.00	3.82
1703	1832	7.655328	AGAGATCACAAAACAAAACAAAACACA	59.345	29.630	0.00	0.00	0.00	3.72
1704	1833	8.017587	AGAGATCACAAAACAAAACAAAACAC	57.982	30.769	0.00	0.00	0.00	3.32
1705	1834	7.330700	GGAGAGATCACAAAACAAAACAAAACA	59.669	33.333	0.00	0.00	0.00	2.83
1706	1835	7.462724	CGGAGAGATCACAAAACAAAACAAAAC	60.463	37.037	0.00	0.00	0.00	2.43
1707	1836	6.529829	CGGAGAGATCACAAAACAAAACAAAA	59.470	34.615	0.00	0.00	0.00	2.44
1708	1837	6.033341	CGGAGAGATCACAAAACAAAACAAA	58.967	36.000	0.00	0.00	0.00	2.83
1709	1838	5.449862	CCGGAGAGATCACAAAACAAAACAA	60.450	40.000	0.00	0.00	0.00	2.83
1730	1862	2.254546	TACAAGCCATAATCAGCCGG	57.745	50.000	0.00	0.00	0.00	6.13
1731	1863	3.610114	GCATTACAAGCCATAATCAGCCG	60.610	47.826	0.00	0.00	0.00	5.52
1743	1875	6.981559	AGTAGCTAGTAGAAAGCATTACAAGC	59.018	38.462	0.00	0.00	42.62	4.01
1760	1892	6.401153	CGCTGGAAACAAAAACTAGTAGCTAG	60.401	42.308	0.00	1.98	42.06	3.42
1761	1893	5.407387	CGCTGGAAACAAAAACTAGTAGCTA	59.593	40.000	0.00	0.00	42.06	3.32
1762	1894	4.213482	CGCTGGAAACAAAAACTAGTAGCT	59.787	41.667	0.00	0.00	42.06	3.32
1763	1895	4.464112	CGCTGGAAACAAAAACTAGTAGC	58.536	43.478	0.00	0.00	42.06	3.58
1783	1915	0.517316	CCTTGGAGTACAACTTGCGC	59.483	55.000	0.00	0.00	34.76	6.09
1795	1929	2.750637	CTGCTGCTGGCCTTGGAG	60.751	66.667	3.32	8.94	40.92	3.86
1836	1983	1.448540	CTCCACACATCGACCCAGC	60.449	63.158	0.00	0.00	0.00	4.85
1837	1984	0.174389	CTCTCCACACATCGACCCAG	59.826	60.000	0.00	0.00	0.00	4.45
1838	1985	0.541998	ACTCTCCACACATCGACCCA	60.542	55.000	0.00	0.00	0.00	4.51
1839	1986	1.471119	TACTCTCCACACATCGACCC	58.529	55.000	0.00	0.00	0.00	4.46
1840	1987	4.135306	TCTATACTCTCCACACATCGACC	58.865	47.826	0.00	0.00	0.00	4.79
1851	1998	7.733402	ACGTCAGTCTTAATCTATACTCTCC	57.267	40.000	0.00	0.00	0.00	3.71
1906	2091	4.929819	TTCTTCTGTAAACAAAAGGCCC	57.070	40.909	0.00	0.00	0.00	5.80
2051	2238	8.974629	TGGGTATCCATCTTCACATGTGTGTG	62.975	46.154	24.63	17.30	46.32	3.82
2056	2243	3.523157	TGTGGGTATCCATCTTCACATGT	59.477	43.478	0.00	0.00	46.09	3.21
2058	2245	4.860802	TTGTGGGTATCCATCTTCACAT	57.139	40.909	0.00	0.00	46.09	3.21
2113	2344	3.846588	AGTCCTAAGAAGAATGGGCTTGA	59.153	43.478	0.00	0.00	29.08	3.02
2142	3043	1.539827	GAACAGGTGCGGCAGTTTATT	59.460	47.619	1.18	0.00	0.00	1.40
2161	3880	1.444119	GGTTGCACGGTTTCTGCTGA	61.444	55.000	0.00	0.00	35.53	4.26
2179	3898	0.037303	ATATGGATTCGCCTGGCTGG	59.963	55.000	17.92	5.98	37.63	4.85
2263	4069	5.382664	TCACCTTTTCCCTTTAGTTCTGT	57.617	39.130	0.00	0.00	0.00	3.41
2309	4115	4.099113	TGAACAGCATGAATTTGTGTCCAA	59.901	37.500	0.00	0.00	39.69	3.53
2353	4161	8.402472	TCTTTATCGTTTGTCAACTTTGATGTT	58.598	29.630	0.00	0.00	39.73	2.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.