Multiple sequence alignment - TraesCS7A01G377200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G377200 | chr7A | 100.000 | 4691 | 0 | 0 | 1 | 4691 | 550309076 | 550313766 | 0.000000e+00 | 8663.0 |
1 | TraesCS7A01G377200 | chr7B | 92.159 | 3507 | 154 | 49 | 596 | 4056 | 509573825 | 509577256 | 0.000000e+00 | 4841.0 |
2 | TraesCS7A01G377200 | chr7D | 94.387 | 1461 | 49 | 9 | 1799 | 3244 | 483929691 | 483931133 | 0.000000e+00 | 2213.0 |
3 | TraesCS7A01G377200 | chr7D | 93.160 | 1272 | 57 | 11 | 551 | 1806 | 483928357 | 483929614 | 0.000000e+00 | 1840.0 |
4 | TraesCS7A01G377200 | chr7D | 89.614 | 828 | 45 | 21 | 3252 | 4076 | 483931191 | 483931980 | 0.000000e+00 | 1014.0 |
5 | TraesCS7A01G377200 | chr7D | 84.880 | 582 | 64 | 3 | 4132 | 4691 | 18761378 | 18761957 | 2.450000e-157 | 566.0 |
6 | TraesCS7A01G377200 | chr7D | 80.117 | 513 | 77 | 12 | 1 | 498 | 150899784 | 150900286 | 4.460000e-95 | 359.0 |
7 | TraesCS7A01G377200 | chr7D | 78.841 | 397 | 82 | 2 | 4257 | 4653 | 589396001 | 589396395 | 2.780000e-67 | 267.0 |
8 | TraesCS7A01G377200 | chr5A | 96.787 | 498 | 15 | 1 | 1 | 498 | 417062960 | 417063456 | 0.000000e+00 | 830.0 |
9 | TraesCS7A01G377200 | chr5A | 82.383 | 579 | 78 | 7 | 4132 | 4687 | 20792338 | 20791761 | 2.540000e-132 | 483.0 |
10 | TraesCS7A01G377200 | chr6B | 85.395 | 582 | 62 | 7 | 4132 | 4691 | 648881954 | 648881374 | 2.430000e-162 | 582.0 |
11 | TraesCS7A01G377200 | chr6B | 79.825 | 114 | 20 | 3 | 4144 | 4256 | 89907869 | 89907758 | 3.890000e-11 | 80.5 |
12 | TraesCS7A01G377200 | chr6B | 81.176 | 85 | 14 | 1 | 4161 | 4245 | 527359736 | 527359818 | 3.030000e-07 | 67.6 |
13 | TraesCS7A01G377200 | chr2D | 81.262 | 523 | 70 | 20 | 1 | 497 | 403777437 | 403776917 | 9.460000e-107 | 398.0 |
14 | TraesCS7A01G377200 | chr2D | 80.925 | 519 | 69 | 20 | 6 | 497 | 403767772 | 403767257 | 2.650000e-102 | 383.0 |
15 | TraesCS7A01G377200 | chr2D | 93.617 | 47 | 2 | 1 | 453 | 499 | 620017367 | 620017412 | 8.420000e-08 | 69.4 |
16 | TraesCS7A01G377200 | chr5B | 79.417 | 583 | 93 | 10 | 4132 | 4691 | 700745466 | 700746044 | 2.050000e-103 | 387.0 |
17 | TraesCS7A01G377200 | chr1D | 89.542 | 306 | 31 | 1 | 4386 | 4691 | 481442888 | 481442584 | 2.050000e-103 | 387.0 |
18 | TraesCS7A01G377200 | chr1D | 100.000 | 29 | 0 | 0 | 469 | 497 | 1234289 | 1234317 | 2.000000e-03 | 54.7 |
19 | TraesCS7A01G377200 | chr1A | 81.542 | 493 | 67 | 11 | 9 | 492 | 589427600 | 589427123 | 7.360000e-103 | 385.0 |
20 | TraesCS7A01G377200 | chrUn | 80.381 | 525 | 73 | 15 | 1 | 498 | 20493452 | 20492931 | 5.730000e-99 | 372.0 |
21 | TraesCS7A01G377200 | chr2A | 74.113 | 564 | 120 | 15 | 4132 | 4687 | 430611398 | 430610853 | 4.760000e-50 | 209.0 |
22 | TraesCS7A01G377200 | chr4B | 76.408 | 373 | 74 | 13 | 4314 | 4679 | 476888927 | 476888562 | 6.200000e-44 | 189.0 |
23 | TraesCS7A01G377200 | chr3B | 76.370 | 292 | 51 | 9 | 216 | 499 | 163713414 | 163713133 | 1.760000e-29 | 141.0 |
24 | TraesCS7A01G377200 | chr3B | 94.643 | 56 | 3 | 0 | 4077 | 4132 | 159534826 | 159534771 | 2.330000e-13 | 87.9 |
25 | TraesCS7A01G377200 | chr2B | 94.643 | 56 | 3 | 0 | 4077 | 4132 | 59672490 | 59672545 | 2.330000e-13 | 87.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G377200 | chr7A | 550309076 | 550313766 | 4690 | False | 8663 | 8663 | 100.000 | 1 | 4691 | 1 | chr7A.!!$F1 | 4690 |
1 | TraesCS7A01G377200 | chr7B | 509573825 | 509577256 | 3431 | False | 4841 | 4841 | 92.159 | 596 | 4056 | 1 | chr7B.!!$F1 | 3460 |
2 | TraesCS7A01G377200 | chr7D | 483928357 | 483931980 | 3623 | False | 1689 | 2213 | 92.387 | 551 | 4076 | 3 | chr7D.!!$F4 | 3525 |
3 | TraesCS7A01G377200 | chr7D | 18761378 | 18761957 | 579 | False | 566 | 566 | 84.880 | 4132 | 4691 | 1 | chr7D.!!$F1 | 559 |
4 | TraesCS7A01G377200 | chr7D | 150899784 | 150900286 | 502 | False | 359 | 359 | 80.117 | 1 | 498 | 1 | chr7D.!!$F2 | 497 |
5 | TraesCS7A01G377200 | chr5A | 20791761 | 20792338 | 577 | True | 483 | 483 | 82.383 | 4132 | 4687 | 1 | chr5A.!!$R1 | 555 |
6 | TraesCS7A01G377200 | chr6B | 648881374 | 648881954 | 580 | True | 582 | 582 | 85.395 | 4132 | 4691 | 1 | chr6B.!!$R2 | 559 |
7 | TraesCS7A01G377200 | chr2D | 403776917 | 403777437 | 520 | True | 398 | 398 | 81.262 | 1 | 497 | 1 | chr2D.!!$R2 | 496 |
8 | TraesCS7A01G377200 | chr2D | 403767257 | 403767772 | 515 | True | 383 | 383 | 80.925 | 6 | 497 | 1 | chr2D.!!$R1 | 491 |
9 | TraesCS7A01G377200 | chr5B | 700745466 | 700746044 | 578 | False | 387 | 387 | 79.417 | 4132 | 4691 | 1 | chr5B.!!$F1 | 559 |
10 | TraesCS7A01G377200 | chrUn | 20492931 | 20493452 | 521 | True | 372 | 372 | 80.381 | 1 | 498 | 1 | chrUn.!!$R1 | 497 |
11 | TraesCS7A01G377200 | chr2A | 430610853 | 430611398 | 545 | True | 209 | 209 | 74.113 | 4132 | 4687 | 1 | chr2A.!!$R1 | 555 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
203 | 215 | 0.026674 | CTGCATGCGTGTATCCAACG | 59.973 | 55.0 | 14.09 | 0.0 | 43.81 | 4.10 | F |
545 | 591 | 0.034337 | TAGACTCCGTGCCAACCAAC | 59.966 | 55.0 | 0.00 | 0.0 | 0.00 | 3.77 | F |
547 | 593 | 0.034337 | GACTCCGTGCCAACCAACTA | 59.966 | 55.0 | 0.00 | 0.0 | 0.00 | 2.24 | F |
548 | 594 | 0.034896 | ACTCCGTGCCAACCAACTAG | 59.965 | 55.0 | 0.00 | 0.0 | 0.00 | 2.57 | F |
549 | 595 | 0.034896 | CTCCGTGCCAACCAACTAGT | 59.965 | 55.0 | 0.00 | 0.0 | 0.00 | 2.57 | F |
988 | 1045 | 0.250727 | TTTTGCCCAGAGAGTTCCGG | 60.251 | 55.0 | 0.00 | 0.0 | 0.00 | 5.14 | F |
2606 | 2764 | 0.250727 | GTTGCTACACTTGCCCTCCA | 60.251 | 55.0 | 0.00 | 0.0 | 0.00 | 3.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1211 | 1268 | 0.038159 | CAGAGGAACTGTGTCGTCCC | 60.038 | 60.0 | 0.00 | 0.0 | 45.37 | 4.46 | R |
1365 | 1424 | 0.957395 | CCACATGTCTGTCAGGCACC | 60.957 | 60.0 | 9.85 | 0.0 | 29.65 | 5.01 | R |
2217 | 2366 | 0.969894 | AGTAGCCTTTGCGAGTGACT | 59.030 | 50.0 | 0.00 | 0.0 | 44.33 | 3.41 | R |
2587 | 2745 | 0.250727 | TGGAGGGCAAGTGTAGCAAC | 60.251 | 55.0 | 0.00 | 0.0 | 0.00 | 4.17 | R |
2593 | 2751 | 1.136828 | TAACAGTGGAGGGCAAGTGT | 58.863 | 50.0 | 0.00 | 0.0 | 0.00 | 3.55 | R |
2898 | 3062 | 0.317770 | GATCAGAGCCTCGCTTCTCG | 60.318 | 60.0 | 0.00 | 0.0 | 39.88 | 4.04 | R |
4085 | 4324 | 0.250124 | TCGACAAACCACGCTCCATT | 60.250 | 50.0 | 0.00 | 0.0 | 0.00 | 3.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
52 | 53 | 1.496934 | CGGTGGACATTTTTGTTGCC | 58.503 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
54 | 55 | 2.547642 | CGGTGGACATTTTTGTTGCCAT | 60.548 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
58 | 59 | 3.640498 | TGGACATTTTTGTTGCCATCAGA | 59.360 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
62 | 63 | 6.362210 | ACATTTTTGTTGCCATCAGAAAAC | 57.638 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
64 | 65 | 4.751767 | TTTTGTTGCCATCAGAAAACCT | 57.248 | 36.364 | 0.00 | 0.00 | 0.00 | 3.50 |
84 | 85 | 3.134458 | CTGAAGGAGAGTGCTTTTTCGT | 58.866 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
91 | 92 | 1.867233 | GAGTGCTTTTTCGTGAGCTCA | 59.133 | 47.619 | 13.74 | 13.74 | 39.60 | 4.26 |
94 | 95 | 1.806542 | TGCTTTTTCGTGAGCTCATCC | 59.193 | 47.619 | 21.47 | 7.00 | 39.60 | 3.51 |
170 | 181 | 1.153208 | CAGTGAGGGAGCTGCATCC | 60.153 | 63.158 | 17.49 | 8.66 | 38.76 | 3.51 |
176 | 187 | 2.123982 | GGAGCTGCATCCCCAAGG | 60.124 | 66.667 | 0.00 | 0.00 | 32.79 | 3.61 |
195 | 207 | 2.133742 | GAAGGTTGCTGCATGCGTGT | 62.134 | 55.000 | 14.09 | 0.00 | 46.63 | 4.49 |
200 | 212 | 0.676151 | TTGCTGCATGCGTGTATCCA | 60.676 | 50.000 | 14.09 | 0.74 | 46.63 | 3.41 |
203 | 215 | 0.026674 | CTGCATGCGTGTATCCAACG | 59.973 | 55.000 | 14.09 | 0.00 | 43.81 | 4.10 |
221 | 233 | 1.469308 | ACGAGGAAGACATGAGACGAC | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
222 | 234 | 1.530031 | CGAGGAAGACATGAGACGACG | 60.530 | 57.143 | 0.00 | 0.00 | 0.00 | 5.12 |
223 | 235 | 1.738350 | GAGGAAGACATGAGACGACGA | 59.262 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
224 | 236 | 2.356382 | GAGGAAGACATGAGACGACGAT | 59.644 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
225 | 237 | 2.098280 | AGGAAGACATGAGACGACGATG | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
226 | 238 | 2.097629 | GGAAGACATGAGACGACGATGA | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
227 | 239 | 3.358775 | GAAGACATGAGACGACGATGAG | 58.641 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
228 | 240 | 1.673400 | AGACATGAGACGACGATGAGG | 59.327 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
229 | 241 | 1.671328 | GACATGAGACGACGATGAGGA | 59.329 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
230 | 242 | 2.092323 | ACATGAGACGACGATGAGGAA | 58.908 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
231 | 243 | 2.098280 | ACATGAGACGACGATGAGGAAG | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
232 | 244 | 0.452184 | TGAGACGACGATGAGGAAGC | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
233 | 245 | 0.248702 | GAGACGACGATGAGGAAGCC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
234 | 246 | 1.586564 | GACGACGATGAGGAAGCCG | 60.587 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
235 | 247 | 2.278857 | CGACGATGAGGAAGCCGG | 60.279 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
236 | 248 | 2.586357 | GACGATGAGGAAGCCGGC | 60.586 | 66.667 | 21.89 | 21.89 | 0.00 | 6.13 |
237 | 249 | 4.514577 | ACGATGAGGAAGCCGGCG | 62.515 | 66.667 | 23.20 | 5.61 | 0.00 | 6.46 |
238 | 250 | 4.207281 | CGATGAGGAAGCCGGCGA | 62.207 | 66.667 | 23.20 | 1.98 | 0.00 | 5.54 |
239 | 251 | 2.586357 | GATGAGGAAGCCGGCGAC | 60.586 | 66.667 | 23.20 | 18.74 | 0.00 | 5.19 |
293 | 324 | 4.529219 | CATCGGCGGTGCAGGCTA | 62.529 | 66.667 | 7.44 | 0.00 | 34.19 | 3.93 |
300 | 331 | 2.591753 | GGTGCAGGCTATGGCAGA | 59.408 | 61.111 | 2.58 | 0.00 | 41.35 | 4.26 |
301 | 332 | 1.150081 | GGTGCAGGCTATGGCAGAT | 59.850 | 57.895 | 2.58 | 0.00 | 41.35 | 2.90 |
303 | 334 | 0.465097 | GTGCAGGCTATGGCAGATGT | 60.465 | 55.000 | 2.58 | 0.00 | 41.35 | 3.06 |
343 | 387 | 3.083997 | GGCTGTGGGAGACGGGAT | 61.084 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
344 | 388 | 2.187946 | GCTGTGGGAGACGGGATG | 59.812 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
346 | 390 | 1.990060 | CTGTGGGAGACGGGATGGT | 60.990 | 63.158 | 0.00 | 0.00 | 0.00 | 3.55 |
348 | 394 | 2.687200 | TGGGAGACGGGATGGTGG | 60.687 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
359 | 405 | 1.021390 | GGATGGTGGCAGAGTCAACG | 61.021 | 60.000 | 0.00 | 0.00 | 0.00 | 4.10 |
364 | 410 | 0.950555 | GTGGCAGAGTCAACGATGCA | 60.951 | 55.000 | 12.52 | 0.00 | 40.46 | 3.96 |
369 | 415 | 3.568538 | GCAGAGTCAACGATGCATTTTT | 58.431 | 40.909 | 0.00 | 0.00 | 38.54 | 1.94 |
372 | 418 | 3.191371 | AGAGTCAACGATGCATTTTTCCC | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 3.97 |
373 | 419 | 3.157087 | AGTCAACGATGCATTTTTCCCT | 58.843 | 40.909 | 0.00 | 0.00 | 0.00 | 4.20 |
374 | 420 | 3.191371 | AGTCAACGATGCATTTTTCCCTC | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
375 | 421 | 3.191371 | GTCAACGATGCATTTTTCCCTCT | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
378 | 424 | 5.475220 | TCAACGATGCATTTTTCCCTCTTTA | 59.525 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
379 | 425 | 6.152661 | TCAACGATGCATTTTTCCCTCTTTAT | 59.847 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
380 | 426 | 6.136541 | ACGATGCATTTTTCCCTCTTTATC | 57.863 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
385 | 431 | 7.781324 | TGCATTTTTCCCTCTTTATCTTCTT | 57.219 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
386 | 432 | 8.877864 | TGCATTTTTCCCTCTTTATCTTCTTA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
399 | 445 | 0.739813 | CTTCTTACGAAGCGGGGTGG | 60.740 | 60.000 | 0.00 | 0.00 | 40.13 | 4.61 |
410 | 456 | 0.391263 | GCGGGGTGGAGAAGTTACAG | 60.391 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
447 | 493 | 0.308993 | AGGCTAATCGTACGGCGTAC | 59.691 | 55.000 | 33.90 | 33.90 | 42.13 | 3.67 |
500 | 546 | 2.422165 | GCCTAGTAGCGCCCTTCC | 59.578 | 66.667 | 2.29 | 0.00 | 0.00 | 3.46 |
501 | 547 | 2.134933 | GCCTAGTAGCGCCCTTCCT | 61.135 | 63.158 | 2.29 | 0.00 | 0.00 | 3.36 |
502 | 548 | 0.826672 | GCCTAGTAGCGCCCTTCCTA | 60.827 | 60.000 | 2.29 | 0.00 | 0.00 | 2.94 |
503 | 549 | 0.960286 | CCTAGTAGCGCCCTTCCTAC | 59.040 | 60.000 | 2.29 | 0.00 | 35.33 | 3.18 |
504 | 550 | 1.688772 | CTAGTAGCGCCCTTCCTACA | 58.311 | 55.000 | 2.29 | 0.00 | 37.09 | 2.74 |
505 | 551 | 2.029623 | CTAGTAGCGCCCTTCCTACAA | 58.970 | 52.381 | 2.29 | 0.00 | 37.09 | 2.41 |
506 | 552 | 1.497161 | AGTAGCGCCCTTCCTACAAT | 58.503 | 50.000 | 2.29 | 0.00 | 37.09 | 2.71 |
507 | 553 | 1.838077 | AGTAGCGCCCTTCCTACAATT | 59.162 | 47.619 | 2.29 | 0.00 | 37.09 | 2.32 |
508 | 554 | 3.036091 | AGTAGCGCCCTTCCTACAATTA | 58.964 | 45.455 | 2.29 | 0.00 | 37.09 | 1.40 |
509 | 555 | 3.646637 | AGTAGCGCCCTTCCTACAATTAT | 59.353 | 43.478 | 2.29 | 0.00 | 37.09 | 1.28 |
510 | 556 | 3.577805 | AGCGCCCTTCCTACAATTATT | 57.422 | 42.857 | 2.29 | 0.00 | 0.00 | 1.40 |
511 | 557 | 3.477530 | AGCGCCCTTCCTACAATTATTC | 58.522 | 45.455 | 2.29 | 0.00 | 0.00 | 1.75 |
512 | 558 | 2.223377 | GCGCCCTTCCTACAATTATTCG | 59.777 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
513 | 559 | 3.463944 | CGCCCTTCCTACAATTATTCGT | 58.536 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
514 | 560 | 3.247648 | CGCCCTTCCTACAATTATTCGTG | 59.752 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
515 | 561 | 3.003378 | GCCCTTCCTACAATTATTCGTGC | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 5.34 |
516 | 562 | 3.247648 | CCCTTCCTACAATTATTCGTGCG | 59.752 | 47.826 | 0.00 | 0.00 | 0.00 | 5.34 |
517 | 563 | 3.869246 | CCTTCCTACAATTATTCGTGCGT | 59.131 | 43.478 | 0.00 | 0.00 | 0.00 | 5.24 |
518 | 564 | 4.331717 | CCTTCCTACAATTATTCGTGCGTT | 59.668 | 41.667 | 0.00 | 0.00 | 0.00 | 4.84 |
519 | 565 | 5.163794 | CCTTCCTACAATTATTCGTGCGTTT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 3.60 |
520 | 566 | 5.211266 | TCCTACAATTATTCGTGCGTTTG | 57.789 | 39.130 | 0.00 | 0.00 | 0.00 | 2.93 |
521 | 567 | 3.783943 | CCTACAATTATTCGTGCGTTTGC | 59.216 | 43.478 | 0.00 | 0.00 | 43.20 | 3.68 |
522 | 568 | 3.552604 | ACAATTATTCGTGCGTTTGCT | 57.447 | 38.095 | 0.00 | 0.00 | 43.34 | 3.91 |
523 | 569 | 3.896122 | ACAATTATTCGTGCGTTTGCTT | 58.104 | 36.364 | 0.00 | 0.00 | 43.34 | 3.91 |
524 | 570 | 4.295051 | ACAATTATTCGTGCGTTTGCTTT | 58.705 | 34.783 | 0.00 | 0.00 | 43.34 | 3.51 |
525 | 571 | 5.453648 | ACAATTATTCGTGCGTTTGCTTTA | 58.546 | 33.333 | 0.00 | 0.00 | 43.34 | 1.85 |
526 | 572 | 6.090129 | ACAATTATTCGTGCGTTTGCTTTAT | 58.910 | 32.000 | 0.00 | 0.00 | 43.34 | 1.40 |
527 | 573 | 7.244898 | ACAATTATTCGTGCGTTTGCTTTATA | 58.755 | 30.769 | 0.00 | 0.00 | 43.34 | 0.98 |
528 | 574 | 7.428183 | ACAATTATTCGTGCGTTTGCTTTATAG | 59.572 | 33.333 | 0.00 | 0.00 | 43.34 | 1.31 |
529 | 575 | 6.650239 | TTATTCGTGCGTTTGCTTTATAGA | 57.350 | 33.333 | 0.00 | 0.00 | 43.34 | 1.98 |
530 | 576 | 3.984018 | TCGTGCGTTTGCTTTATAGAC | 57.016 | 42.857 | 0.00 | 0.00 | 43.34 | 2.59 |
531 | 577 | 3.581755 | TCGTGCGTTTGCTTTATAGACT | 58.418 | 40.909 | 0.00 | 0.00 | 43.34 | 3.24 |
532 | 578 | 3.611113 | TCGTGCGTTTGCTTTATAGACTC | 59.389 | 43.478 | 0.00 | 0.00 | 43.34 | 3.36 |
533 | 579 | 3.241995 | CGTGCGTTTGCTTTATAGACTCC | 60.242 | 47.826 | 0.00 | 0.00 | 43.34 | 3.85 |
534 | 580 | 2.927477 | TGCGTTTGCTTTATAGACTCCG | 59.073 | 45.455 | 0.00 | 0.00 | 43.34 | 4.63 |
535 | 581 | 2.928116 | GCGTTTGCTTTATAGACTCCGT | 59.072 | 45.455 | 0.00 | 0.00 | 38.39 | 4.69 |
536 | 582 | 3.241995 | GCGTTTGCTTTATAGACTCCGTG | 60.242 | 47.826 | 0.00 | 0.00 | 38.39 | 4.94 |
537 | 583 | 3.241995 | CGTTTGCTTTATAGACTCCGTGC | 60.242 | 47.826 | 0.00 | 0.00 | 0.00 | 5.34 |
538 | 584 | 2.596904 | TGCTTTATAGACTCCGTGCC | 57.403 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
539 | 585 | 1.828595 | TGCTTTATAGACTCCGTGCCA | 59.171 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
540 | 586 | 2.235155 | TGCTTTATAGACTCCGTGCCAA | 59.765 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
541 | 587 | 2.608090 | GCTTTATAGACTCCGTGCCAAC | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
542 | 588 | 2.973694 | TTATAGACTCCGTGCCAACC | 57.026 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
543 | 589 | 1.855295 | TATAGACTCCGTGCCAACCA | 58.145 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
544 | 590 | 0.981183 | ATAGACTCCGTGCCAACCAA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
545 | 591 | 0.034337 | TAGACTCCGTGCCAACCAAC | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
546 | 592 | 1.227853 | GACTCCGTGCCAACCAACT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
547 | 593 | 0.034337 | GACTCCGTGCCAACCAACTA | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
548 | 594 | 0.034896 | ACTCCGTGCCAACCAACTAG | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
549 | 595 | 0.034896 | CTCCGTGCCAACCAACTAGT | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
561 | 607 | 6.743490 | GCCAACCAACTAGTAAAGTACCTTCT | 60.743 | 42.308 | 0.00 | 0.00 | 37.50 | 2.85 |
570 | 616 | 8.532819 | ACTAGTAAAGTACCTTCTTCTGATTGG | 58.467 | 37.037 | 0.00 | 0.00 | 36.36 | 3.16 |
577 | 623 | 2.613977 | CCTTCTTCTGATTGGCGTGTCT | 60.614 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
580 | 626 | 4.471904 | TCTTCTGATTGGCGTGTCTTAT | 57.528 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
602 | 653 | 5.860648 | TTTATCTCCCACTCTTTTTCCCT | 57.139 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
687 | 738 | 3.296854 | AGGTACGATGAGTCCAATAGCA | 58.703 | 45.455 | 0.00 | 0.00 | 0.00 | 3.49 |
727 | 784 | 3.300388 | TCCAAGGCTCAGATATTCGAGT | 58.700 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
730 | 787 | 4.985409 | CCAAGGCTCAGATATTCGAGTTAC | 59.015 | 45.833 | 0.00 | 0.00 | 0.00 | 2.50 |
756 | 813 | 9.542462 | CTATGATCCGTTTTGAAGTTCCTAATA | 57.458 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
757 | 814 | 8.801882 | ATGATCCGTTTTGAAGTTCCTAATAA | 57.198 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
759 | 816 | 9.238368 | TGATCCGTTTTGAAGTTCCTAATAATT | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
762 | 819 | 9.685828 | TCCGTTTTGAAGTTCCTAATAATTTTG | 57.314 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
763 | 820 | 9.471084 | CCGTTTTGAAGTTCCTAATAATTTTGT | 57.529 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
770 | 827 | 9.449719 | GAAGTTCCTAATAATTTTGTCCAGAGA | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
785 | 842 | 6.647229 | TGTCCAGAGAAGTAGTAGTATTCGA | 58.353 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
833 | 890 | 3.663995 | TCGATTTGGTGACTCCGTTAA | 57.336 | 42.857 | 0.00 | 0.00 | 39.52 | 2.01 |
875 | 932 | 5.449553 | GAGAATCCATCCAAACCTACCATT | 58.550 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
909 | 966 | 5.877012 | TCATGAGATACCAAGTTCTTGCTTC | 59.123 | 40.000 | 7.00 | 4.06 | 0.00 | 3.86 |
920 | 977 | 3.056536 | AGTTCTTGCTTCGAGATGCTGTA | 60.057 | 43.478 | 11.37 | 0.00 | 33.23 | 2.74 |
983 | 1040 | 3.373110 | GGGGATTATTTTGCCCAGAGAGT | 60.373 | 47.826 | 0.00 | 0.00 | 46.14 | 3.24 |
984 | 1041 | 4.281657 | GGGATTATTTTGCCCAGAGAGTT | 58.718 | 43.478 | 0.00 | 0.00 | 41.64 | 3.01 |
985 | 1042 | 4.339530 | GGGATTATTTTGCCCAGAGAGTTC | 59.660 | 45.833 | 0.00 | 0.00 | 41.64 | 3.01 |
986 | 1043 | 4.339530 | GGATTATTTTGCCCAGAGAGTTCC | 59.660 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
987 | 1044 | 1.826385 | ATTTTGCCCAGAGAGTTCCG | 58.174 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
988 | 1045 | 0.250727 | TTTTGCCCAGAGAGTTCCGG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
989 | 1046 | 2.748058 | TTTGCCCAGAGAGTTCCGGC | 62.748 | 60.000 | 0.00 | 0.00 | 38.91 | 6.13 |
990 | 1047 | 3.394836 | GCCCAGAGAGTTCCGGCT | 61.395 | 66.667 | 0.00 | 0.00 | 36.68 | 5.52 |
1029 | 1086 | 1.077429 | GCATCTCTTGGGGGTCACC | 60.077 | 63.158 | 0.00 | 0.00 | 39.11 | 4.02 |
1033 | 1090 | 2.121963 | TCTTGGGGGTCACCTGCT | 60.122 | 61.111 | 0.00 | 0.00 | 40.03 | 4.24 |
1137 | 1194 | 0.321653 | ACAAGGAAACCCTAGCAGCG | 60.322 | 55.000 | 0.00 | 0.00 | 32.65 | 5.18 |
1149 | 1206 | 4.120331 | GCAGCGGCAAAATCGGCT | 62.120 | 61.111 | 3.18 | 0.00 | 42.29 | 5.52 |
1199 | 1256 | 0.316841 | GATGGATCTCGCCACTCTCC | 59.683 | 60.000 | 0.00 | 0.00 | 41.56 | 3.71 |
1211 | 1268 | 3.465403 | CTCTCCCGGCCTGTCAGG | 61.465 | 72.222 | 15.15 | 15.15 | 38.80 | 3.86 |
1242 | 1299 | 3.056465 | CAGTTCCTCTGGACAACTACCTC | 60.056 | 52.174 | 0.00 | 0.00 | 40.23 | 3.85 |
1266 | 1323 | 2.761208 | CACCCAGTACTTCGGAGAGATT | 59.239 | 50.000 | 11.93 | 0.00 | 38.43 | 2.40 |
1299 | 1356 | 4.043168 | CCGCAGAACTTCACGGTT | 57.957 | 55.556 | 12.77 | 0.00 | 40.77 | 4.44 |
1302 | 1359 | 2.073816 | CCGCAGAACTTCACGGTTATT | 58.926 | 47.619 | 12.77 | 0.00 | 40.77 | 1.40 |
1308 | 1365 | 6.149633 | GCAGAACTTCACGGTTATTTTTGAT | 58.850 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1311 | 1368 | 8.504005 | CAGAACTTCACGGTTATTTTTGATACT | 58.496 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1341 | 1398 | 1.068417 | CTTGTGGGTTCCGTCGTCA | 59.932 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
1365 | 1424 | 5.526010 | AATGCTACTTTTCGGTAAGTTCG | 57.474 | 39.130 | 8.09 | 3.14 | 39.08 | 3.95 |
1371 | 1430 | 0.393820 | TTTCGGTAAGTTCGGTGCCT | 59.606 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1487 | 1553 | 5.403766 | GGTGTCTATGTTCATTCAGATAGCG | 59.596 | 44.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1549 | 1615 | 4.092968 | CACTTACAAGAAGAACGGTATGCC | 59.907 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
1843 | 1992 | 2.086869 | CAGGAGTACCAACCAATGCTG | 58.913 | 52.381 | 0.00 | 0.00 | 38.94 | 4.41 |
1943 | 2092 | 3.756082 | ATACTTGGGCTTGGATTTCCA | 57.244 | 42.857 | 0.00 | 0.00 | 45.94 | 3.53 |
2044 | 2193 | 2.165030 | GCAATGCTGTTGCCTGAATACT | 59.835 | 45.455 | 14.08 | 0.00 | 39.38 | 2.12 |
2045 | 2194 | 3.733077 | GCAATGCTGTTGCCTGAATACTC | 60.733 | 47.826 | 14.08 | 0.00 | 39.38 | 2.59 |
2046 | 2195 | 3.641434 | ATGCTGTTGCCTGAATACTCT | 57.359 | 42.857 | 0.00 | 0.00 | 38.71 | 3.24 |
2150 | 2299 | 1.069765 | GTGATCCCGATGCATCCGT | 59.930 | 57.895 | 20.87 | 4.40 | 0.00 | 4.69 |
2217 | 2366 | 2.496111 | GGGAAACACACATACGTTCCA | 58.504 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
2427 | 2584 | 9.830186 | AACTATGGTATATAACTGAGACATCCT | 57.170 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2428 | 2585 | 9.830186 | ACTATGGTATATAACTGAGACATCCTT | 57.170 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
2560 | 2718 | 5.819991 | AGAGAGTATGGAGAGATGATCCTC | 58.180 | 45.833 | 0.00 | 3.29 | 37.74 | 3.71 |
2587 | 2745 | 2.031682 | GCTTGTAGCACAGGTTTGTCAG | 60.032 | 50.000 | 0.00 | 0.00 | 41.89 | 3.51 |
2593 | 2751 | 1.946768 | GCACAGGTTTGTCAGTTGCTA | 59.053 | 47.619 | 0.00 | 0.00 | 34.62 | 3.49 |
2606 | 2764 | 0.250727 | GTTGCTACACTTGCCCTCCA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2784 | 2948 | 1.002430 | GTCAGGTCAGCTCAACATCCA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2800 | 2964 | 5.801350 | ACATCCACATCAAGTCGTATTTG | 57.199 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2877 | 3041 | 8.839343 | CATGAATGACTATGCAGTAACCAAATA | 58.161 | 33.333 | 0.00 | 0.00 | 34.21 | 1.40 |
2890 | 3054 | 8.726988 | GCAGTAACCAAATAGAATCTGTTGTTA | 58.273 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2928 | 3092 | 1.481772 | GGCTCTGATCTTCTCTGCACT | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
3011 | 3175 | 4.435253 | GCTCATCTTGGATTATGCGAATCG | 60.435 | 45.833 | 0.00 | 0.00 | 0.00 | 3.34 |
3028 | 3192 | 0.908910 | TCGGGTCAGTACTACCGGTA | 59.091 | 55.000 | 24.03 | 14.95 | 45.97 | 4.02 |
3069 | 3233 | 2.227388 | CTGAATGTCAAGTGGGTGAAGC | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3077 | 3241 | 0.603707 | AGTGGGTGAAGCGTGTGATG | 60.604 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3244 | 3408 | 1.339151 | GGTGAGGTGCTCCCTAAGTTG | 60.339 | 57.143 | 0.00 | 0.00 | 46.51 | 3.16 |
3275 | 3490 | 7.069578 | TGGTCATACCTTCAGTTAAGATAGTCC | 59.930 | 40.741 | 0.00 | 0.00 | 39.58 | 3.85 |
3381 | 3597 | 9.613428 | ACTTGCTACATATATGCAGTCTAAAAA | 57.387 | 29.630 | 12.79 | 0.00 | 38.01 | 1.94 |
3433 | 3649 | 1.453379 | CTGGAGCAATCAGGCCAGG | 60.453 | 63.158 | 5.01 | 0.00 | 43.22 | 4.45 |
3515 | 3732 | 0.037232 | GCGCCCTAACAGTCTTCAGT | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3516 | 3733 | 1.997669 | CGCCCTAACAGTCTTCAGTC | 58.002 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3518 | 3735 | 2.028930 | CGCCCTAACAGTCTTCAGTCTT | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3519 | 3736 | 3.591023 | GCCCTAACAGTCTTCAGTCTTC | 58.409 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3520 | 3737 | 3.006967 | GCCCTAACAGTCTTCAGTCTTCA | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3521 | 3738 | 4.815269 | CCCTAACAGTCTTCAGTCTTCAG | 58.185 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3522 | 3739 | 4.282195 | CCCTAACAGTCTTCAGTCTTCAGT | 59.718 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
3523 | 3740 | 5.465935 | CCTAACAGTCTTCAGTCTTCAGTC | 58.534 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
3524 | 3741 | 5.242838 | CCTAACAGTCTTCAGTCTTCAGTCT | 59.757 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3525 | 3742 | 5.606348 | AACAGTCTTCAGTCTTCAGTCTT | 57.394 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
3526 | 3743 | 5.195001 | ACAGTCTTCAGTCTTCAGTCTTC | 57.805 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
3527 | 3744 | 4.225984 | CAGTCTTCAGTCTTCAGTCTTCG | 58.774 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
3528 | 3745 | 2.983803 | GTCTTCAGTCTTCAGTCTTCGC | 59.016 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3569 | 3786 | 1.006220 | GCTTGTTTTCCCCTTGCGG | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
3595 | 3812 | 1.842720 | TGATCGACGTTTCGTGTTGT | 58.157 | 45.000 | 0.00 | 0.00 | 46.01 | 3.32 |
3687 | 3904 | 3.059386 | GGGTTCGCCAAATCCGCA | 61.059 | 61.111 | 0.00 | 0.00 | 39.65 | 5.69 |
3706 | 3938 | 3.201290 | GCATGAGGACTTGGTGTATCAG | 58.799 | 50.000 | 0.00 | 0.00 | 30.96 | 2.90 |
3852 | 4091 | 5.737860 | TGCTATGTATGGCTTGATATGGAG | 58.262 | 41.667 | 1.96 | 0.00 | 35.09 | 3.86 |
3953 | 4192 | 0.178068 | ATCGTTTATGCGGCCACTCT | 59.822 | 50.000 | 2.24 | 0.00 | 0.00 | 3.24 |
3957 | 4196 | 1.130561 | GTTTATGCGGCCACTCTCAAC | 59.869 | 52.381 | 2.24 | 0.00 | 0.00 | 3.18 |
3965 | 4204 | 0.593128 | GCCACTCTCAACGCACATTT | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3978 | 4217 | 2.413796 | CGCACATTTTCTTAGCACGGTA | 59.586 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4038 | 4277 | 7.962373 | TCGCAATGTATGTTCTTTTGAGTATTG | 59.038 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
4039 | 4278 | 7.218773 | CGCAATGTATGTTCTTTTGAGTATTGG | 59.781 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4040 | 4279 | 8.243426 | GCAATGTATGTTCTTTTGAGTATTGGA | 58.757 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
4061 | 4300 | 6.309357 | TGGAGTATCTAAATTAGCCTCCGTA | 58.691 | 40.000 | 18.99 | 8.01 | 37.54 | 4.02 |
4072 | 4311 | 6.990908 | ATTAGCCTCCGTATAGTAGGTTTT | 57.009 | 37.500 | 0.00 | 0.00 | 32.67 | 2.43 |
4076 | 4315 | 3.378339 | CTCCGTATAGTAGGTTTTGGCG | 58.622 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
4077 | 4316 | 2.101249 | TCCGTATAGTAGGTTTTGGCGG | 59.899 | 50.000 | 0.00 | 0.00 | 38.20 | 6.13 |
4078 | 4317 | 1.862827 | CGTATAGTAGGTTTTGGCGGC | 59.137 | 52.381 | 0.00 | 0.00 | 0.00 | 6.53 |
4079 | 4318 | 2.482490 | CGTATAGTAGGTTTTGGCGGCT | 60.482 | 50.000 | 11.43 | 0.00 | 0.00 | 5.52 |
4080 | 4319 | 3.243501 | CGTATAGTAGGTTTTGGCGGCTA | 60.244 | 47.826 | 11.43 | 0.00 | 0.00 | 3.93 |
4081 | 4320 | 3.918294 | ATAGTAGGTTTTGGCGGCTAA | 57.082 | 42.857 | 11.43 | 6.05 | 0.00 | 3.09 |
4082 | 4321 | 1.817357 | AGTAGGTTTTGGCGGCTAAC | 58.183 | 50.000 | 11.43 | 14.08 | 0.00 | 2.34 |
4083 | 4322 | 0.806868 | GTAGGTTTTGGCGGCTAACC | 59.193 | 55.000 | 27.34 | 27.34 | 41.27 | 2.85 |
4084 | 4323 | 0.400975 | TAGGTTTTGGCGGCTAACCA | 59.599 | 50.000 | 32.10 | 21.64 | 42.96 | 3.67 |
4085 | 4324 | 0.468400 | AGGTTTTGGCGGCTAACCAA | 60.468 | 50.000 | 32.10 | 15.73 | 45.37 | 3.67 |
4089 | 4328 | 2.271940 | TTGGCGGCTAACCAAATGG | 58.728 | 52.632 | 11.43 | 0.00 | 44.11 | 3.16 |
4090 | 4329 | 0.251386 | TTGGCGGCTAACCAAATGGA | 60.251 | 50.000 | 11.43 | 0.00 | 44.11 | 3.41 |
4091 | 4330 | 0.679640 | TGGCGGCTAACCAAATGGAG | 60.680 | 55.000 | 11.43 | 0.00 | 38.94 | 3.86 |
4092 | 4331 | 1.433471 | GCGGCTAACCAAATGGAGC | 59.567 | 57.895 | 6.42 | 5.54 | 38.94 | 4.70 |
4093 | 4332 | 1.721487 | CGGCTAACCAAATGGAGCG | 59.279 | 57.895 | 6.42 | 0.00 | 36.28 | 5.03 |
4094 | 4333 | 1.024579 | CGGCTAACCAAATGGAGCGT | 61.025 | 55.000 | 6.42 | 0.00 | 36.28 | 5.07 |
4095 | 4334 | 0.451783 | GGCTAACCAAATGGAGCGTG | 59.548 | 55.000 | 6.42 | 0.00 | 36.28 | 5.34 |
4096 | 4335 | 0.451783 | GCTAACCAAATGGAGCGTGG | 59.548 | 55.000 | 6.42 | 0.00 | 38.94 | 4.94 |
4098 | 4337 | 4.920828 | ACCAAATGGAGCGTGGTT | 57.079 | 50.000 | 6.42 | 0.00 | 43.19 | 3.67 |
4099 | 4338 | 3.125520 | ACCAAATGGAGCGTGGTTT | 57.874 | 47.368 | 6.42 | 0.00 | 43.19 | 3.27 |
4100 | 4339 | 0.673437 | ACCAAATGGAGCGTGGTTTG | 59.327 | 50.000 | 6.42 | 0.00 | 43.19 | 2.93 |
4101 | 4340 | 0.673437 | CCAAATGGAGCGTGGTTTGT | 59.327 | 50.000 | 0.00 | 0.00 | 37.39 | 2.83 |
4102 | 4341 | 1.335872 | CCAAATGGAGCGTGGTTTGTC | 60.336 | 52.381 | 0.00 | 0.00 | 37.39 | 3.18 |
4103 | 4342 | 0.591170 | AAATGGAGCGTGGTTTGTCG | 59.409 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4104 | 4343 | 0.250124 | AATGGAGCGTGGTTTGTCGA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4105 | 4344 | 0.949105 | ATGGAGCGTGGTTTGTCGAC | 60.949 | 55.000 | 9.11 | 9.11 | 0.00 | 4.20 |
4106 | 4345 | 2.315386 | GGAGCGTGGTTTGTCGACC | 61.315 | 63.158 | 14.12 | 0.00 | 40.23 | 4.79 |
4114 | 4353 | 2.993937 | TGGTTTGTCGACCAAAAGACT | 58.006 | 42.857 | 14.12 | 0.00 | 46.33 | 3.24 |
4115 | 4354 | 4.139859 | TGGTTTGTCGACCAAAAGACTA | 57.860 | 40.909 | 14.12 | 0.00 | 46.33 | 2.59 |
4116 | 4355 | 4.124238 | TGGTTTGTCGACCAAAAGACTAG | 58.876 | 43.478 | 14.12 | 0.00 | 46.33 | 2.57 |
4117 | 4356 | 3.497262 | GGTTTGTCGACCAAAAGACTAGG | 59.503 | 47.826 | 14.12 | 0.00 | 44.36 | 3.02 |
4118 | 4357 | 3.396260 | TTGTCGACCAAAAGACTAGGG | 57.604 | 47.619 | 14.12 | 0.00 | 38.16 | 3.53 |
4119 | 4358 | 2.600790 | TGTCGACCAAAAGACTAGGGA | 58.399 | 47.619 | 14.12 | 0.00 | 38.16 | 4.20 |
4120 | 4359 | 2.561419 | TGTCGACCAAAAGACTAGGGAG | 59.439 | 50.000 | 14.12 | 0.00 | 38.16 | 4.30 |
4121 | 4360 | 2.094130 | GTCGACCAAAAGACTAGGGAGG | 60.094 | 54.545 | 3.51 | 0.00 | 34.74 | 4.30 |
4122 | 4361 | 1.900486 | CGACCAAAAGACTAGGGAGGT | 59.100 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
4123 | 4362 | 2.302157 | CGACCAAAAGACTAGGGAGGTT | 59.698 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4124 | 4363 | 3.244457 | CGACCAAAAGACTAGGGAGGTTT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
4125 | 4364 | 4.020839 | CGACCAAAAGACTAGGGAGGTTTA | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
4126 | 4365 | 5.489249 | GACCAAAAGACTAGGGAGGTTTAG | 58.511 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
4127 | 4366 | 4.288887 | ACCAAAAGACTAGGGAGGTTTAGG | 59.711 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
4128 | 4367 | 4.288887 | CCAAAAGACTAGGGAGGTTTAGGT | 59.711 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
4129 | 4368 | 5.486419 | CCAAAAGACTAGGGAGGTTTAGGTA | 59.514 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
4130 | 4369 | 6.158169 | CCAAAAGACTAGGGAGGTTTAGGTAT | 59.842 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
4167 | 4406 | 4.589374 | AGATCAGGGAGGTTTAGGTATTCG | 59.411 | 45.833 | 0.00 | 0.00 | 0.00 | 3.34 |
4229 | 4468 | 9.905713 | AATGGCTATTCAAACTACTTATTGAGA | 57.094 | 29.630 | 0.00 | 0.00 | 36.93 | 3.27 |
4275 | 4536 | 3.912496 | CCGATATCCCAGGCATATTGA | 57.088 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4289 | 4550 | 4.141869 | GGCATATTGAAAGCCTGGTGATTT | 60.142 | 41.667 | 0.00 | 0.00 | 44.92 | 2.17 |
4304 | 4566 | 3.401182 | GTGATTTGCATTTTTGGGCTGA | 58.599 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
4305 | 4567 | 3.187022 | GTGATTTGCATTTTTGGGCTGAC | 59.813 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4475 | 4739 | 2.324860 | TGATACTCTTGCACACGTTCG | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
4490 | 4754 | 2.515979 | TTCGCAGCTCTTCCCCACA | 61.516 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
4491 | 4755 | 1.841302 | TTCGCAGCTCTTCCCCACAT | 61.841 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4504 | 4768 | 7.308830 | GCTCTTCCCCACATAATGTATCATTTC | 60.309 | 40.741 | 0.37 | 0.00 | 0.00 | 2.17 |
4506 | 4770 | 6.181206 | TCCCCACATAATGTATCATTTCGA | 57.819 | 37.500 | 0.37 | 0.00 | 0.00 | 3.71 |
4525 | 4791 | 2.424732 | AGGGATTTGATTGGCCCCT | 58.575 | 52.632 | 0.00 | 0.00 | 41.65 | 4.79 |
4527 | 4793 | 1.050421 | GGGATTTGATTGGCCCCTGG | 61.050 | 60.000 | 0.00 | 0.00 | 34.39 | 4.45 |
4560 | 4826 | 5.979993 | TGGCAACATCTACTATTCCGTTTA | 58.020 | 37.500 | 0.00 | 0.00 | 46.17 | 2.01 |
4605 | 4871 | 1.339610 | CGGGATGTGTTTTGCTGGAAA | 59.660 | 47.619 | 0.00 | 0.00 | 0.00 | 3.13 |
4617 | 4883 | 6.544197 | TGTTTTGCTGGAAACTAACTACATCA | 59.456 | 34.615 | 0.00 | 0.00 | 39.62 | 3.07 |
4629 | 4895 | 5.780793 | ACTAACTACATCAGGGTCTTTCACT | 59.219 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
39 | 40 | 8.802800 | CAGGTTTTCTGATGGCAACAAAAATGT | 61.803 | 37.037 | 15.20 | 7.83 | 45.63 | 2.71 |
58 | 59 | 3.584733 | AAGCACTCTCCTTCAGGTTTT | 57.415 | 42.857 | 0.00 | 0.00 | 36.34 | 2.43 |
62 | 63 | 2.481952 | CGAAAAAGCACTCTCCTTCAGG | 59.518 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
64 | 65 | 2.872245 | CACGAAAAAGCACTCTCCTTCA | 59.128 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
70 | 71 | 2.139118 | GAGCTCACGAAAAAGCACTCT | 58.861 | 47.619 | 9.40 | 0.00 | 41.06 | 3.24 |
75 | 76 | 2.079925 | AGGATGAGCTCACGAAAAAGC | 58.920 | 47.619 | 20.97 | 0.00 | 38.84 | 3.51 |
84 | 85 | 2.060383 | CACCCCGAGGATGAGCTCA | 61.060 | 63.158 | 20.79 | 20.79 | 36.73 | 4.26 |
91 | 92 | 3.000819 | TCGCAACACCCCGAGGAT | 61.001 | 61.111 | 0.00 | 0.00 | 36.73 | 3.24 |
168 | 179 | 1.460255 | CAGCAACCTTCCTTGGGGA | 59.540 | 57.895 | 0.00 | 0.00 | 40.36 | 4.81 |
170 | 181 | 0.901580 | ATGCAGCAACCTTCCTTGGG | 60.902 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
171 | 182 | 0.245539 | CATGCAGCAACCTTCCTTGG | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
173 | 184 | 1.870055 | CGCATGCAGCAACCTTCCTT | 61.870 | 55.000 | 19.57 | 0.00 | 46.13 | 3.36 |
174 | 185 | 2.338015 | CGCATGCAGCAACCTTCCT | 61.338 | 57.895 | 19.57 | 0.00 | 46.13 | 3.36 |
176 | 187 | 1.443194 | CACGCATGCAGCAACCTTC | 60.443 | 57.895 | 19.57 | 0.00 | 46.13 | 3.46 |
177 | 188 | 0.888736 | TACACGCATGCAGCAACCTT | 60.889 | 50.000 | 19.57 | 0.00 | 46.13 | 3.50 |
179 | 190 | 0.248215 | GATACACGCATGCAGCAACC | 60.248 | 55.000 | 19.57 | 0.00 | 46.13 | 3.77 |
195 | 207 | 4.098044 | GTCTCATGTCTTCCTCGTTGGATA | 59.902 | 45.833 | 0.00 | 0.00 | 45.68 | 2.59 |
200 | 212 | 2.095161 | GTCGTCTCATGTCTTCCTCGTT | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
203 | 215 | 1.738350 | TCGTCGTCTCATGTCTTCCTC | 59.262 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
209 | 221 | 1.671328 | TCCTCATCGTCGTCTCATGTC | 59.329 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
221 | 233 | 4.207281 | TCGCCGGCTTCCTCATCG | 62.207 | 66.667 | 26.68 | 5.22 | 0.00 | 3.84 |
222 | 234 | 2.586357 | GTCGCCGGCTTCCTCATC | 60.586 | 66.667 | 26.68 | 1.70 | 0.00 | 2.92 |
223 | 235 | 4.162690 | GGTCGCCGGCTTCCTCAT | 62.163 | 66.667 | 26.68 | 0.00 | 0.00 | 2.90 |
278 | 309 | 4.529219 | CATAGCCTGCACCGCCGA | 62.529 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
292 | 323 | 2.588596 | CGCCGCACATCTGCCATA | 60.589 | 61.111 | 0.00 | 0.00 | 40.73 | 2.74 |
293 | 324 | 4.471908 | TCGCCGCACATCTGCCAT | 62.472 | 61.111 | 0.00 | 0.00 | 40.73 | 4.40 |
334 | 378 | 2.187946 | CTGCCACCATCCCGTCTC | 59.812 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
341 | 385 | 0.037326 | TCGTTGACTCTGCCACCATC | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
342 | 386 | 0.615331 | ATCGTTGACTCTGCCACCAT | 59.385 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
343 | 387 | 0.320683 | CATCGTTGACTCTGCCACCA | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
344 | 388 | 1.639298 | GCATCGTTGACTCTGCCACC | 61.639 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
346 | 390 | 0.036105 | ATGCATCGTTGACTCTGCCA | 60.036 | 50.000 | 0.00 | 0.00 | 33.70 | 4.92 |
348 | 394 | 2.907910 | AAATGCATCGTTGACTCTGC | 57.092 | 45.000 | 0.00 | 0.00 | 35.21 | 4.26 |
359 | 405 | 8.005192 | AGAAGATAAAGAGGGAAAAATGCATC | 57.995 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
385 | 431 | 1.601419 | CTTCTCCACCCCGCTTCGTA | 61.601 | 60.000 | 0.00 | 0.00 | 0.00 | 3.43 |
386 | 432 | 2.920912 | TTCTCCACCCCGCTTCGT | 60.921 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
399 | 445 | 2.097791 | ACCGCTCGATCTGTAACTTCTC | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
410 | 456 | 2.475685 | GCCTGTTTTAAACCGCTCGATC | 60.476 | 50.000 | 5.32 | 0.00 | 0.00 | 3.69 |
447 | 493 | 2.125431 | ATTTGGGCCGGTCGTACG | 60.125 | 61.111 | 9.53 | 9.53 | 0.00 | 3.67 |
450 | 496 | 3.327404 | AGGATTTGGGCCGGTCGT | 61.327 | 61.111 | 1.90 | 0.00 | 0.00 | 4.34 |
451 | 497 | 2.824041 | CAGGATTTGGGCCGGTCG | 60.824 | 66.667 | 1.90 | 0.00 | 0.00 | 4.79 |
489 | 535 | 4.638304 | GAATAATTGTAGGAAGGGCGCTA | 58.362 | 43.478 | 7.64 | 0.00 | 0.00 | 4.26 |
498 | 544 | 4.436317 | GCAAACGCACGAATAATTGTAGGA | 60.436 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
499 | 545 | 3.783943 | GCAAACGCACGAATAATTGTAGG | 59.216 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
500 | 546 | 4.647964 | AGCAAACGCACGAATAATTGTAG | 58.352 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
501 | 547 | 4.671880 | AGCAAACGCACGAATAATTGTA | 57.328 | 36.364 | 0.00 | 0.00 | 0.00 | 2.41 |
502 | 548 | 3.552604 | AGCAAACGCACGAATAATTGT | 57.447 | 38.095 | 0.00 | 0.00 | 0.00 | 2.71 |
503 | 549 | 4.884257 | AAAGCAAACGCACGAATAATTG | 57.116 | 36.364 | 0.00 | 0.00 | 0.00 | 2.32 |
504 | 550 | 7.638683 | GTCTATAAAGCAAACGCACGAATAATT | 59.361 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
505 | 551 | 7.011109 | AGTCTATAAAGCAAACGCACGAATAAT | 59.989 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
506 | 552 | 6.311935 | AGTCTATAAAGCAAACGCACGAATAA | 59.688 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
507 | 553 | 5.808540 | AGTCTATAAAGCAAACGCACGAATA | 59.191 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
508 | 554 | 4.630069 | AGTCTATAAAGCAAACGCACGAAT | 59.370 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
509 | 555 | 3.991773 | AGTCTATAAAGCAAACGCACGAA | 59.008 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
510 | 556 | 3.581755 | AGTCTATAAAGCAAACGCACGA | 58.418 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
511 | 557 | 3.241995 | GGAGTCTATAAAGCAAACGCACG | 60.242 | 47.826 | 0.00 | 0.00 | 0.00 | 5.34 |
512 | 558 | 3.241995 | CGGAGTCTATAAAGCAAACGCAC | 60.242 | 47.826 | 0.00 | 0.00 | 0.00 | 5.34 |
513 | 559 | 2.927477 | CGGAGTCTATAAAGCAAACGCA | 59.073 | 45.455 | 0.00 | 0.00 | 0.00 | 5.24 |
514 | 560 | 2.928116 | ACGGAGTCTATAAAGCAAACGC | 59.072 | 45.455 | 0.00 | 0.00 | 29.74 | 4.84 |
515 | 561 | 3.241995 | GCACGGAGTCTATAAAGCAAACG | 60.242 | 47.826 | 0.00 | 0.00 | 41.61 | 3.60 |
516 | 562 | 3.063588 | GGCACGGAGTCTATAAAGCAAAC | 59.936 | 47.826 | 0.00 | 0.00 | 41.61 | 2.93 |
517 | 563 | 3.267483 | GGCACGGAGTCTATAAAGCAAA | 58.733 | 45.455 | 0.00 | 0.00 | 41.61 | 3.68 |
518 | 564 | 2.235155 | TGGCACGGAGTCTATAAAGCAA | 59.765 | 45.455 | 0.00 | 0.00 | 41.61 | 3.91 |
519 | 565 | 1.828595 | TGGCACGGAGTCTATAAAGCA | 59.171 | 47.619 | 0.00 | 0.00 | 41.61 | 3.91 |
520 | 566 | 2.596904 | TGGCACGGAGTCTATAAAGC | 57.403 | 50.000 | 0.00 | 0.00 | 41.61 | 3.51 |
521 | 567 | 3.195661 | GGTTGGCACGGAGTCTATAAAG | 58.804 | 50.000 | 0.00 | 0.00 | 41.61 | 1.85 |
522 | 568 | 2.568062 | TGGTTGGCACGGAGTCTATAAA | 59.432 | 45.455 | 0.00 | 0.00 | 41.61 | 1.40 |
523 | 569 | 2.181125 | TGGTTGGCACGGAGTCTATAA | 58.819 | 47.619 | 0.00 | 0.00 | 41.61 | 0.98 |
524 | 570 | 1.855295 | TGGTTGGCACGGAGTCTATA | 58.145 | 50.000 | 0.00 | 0.00 | 41.61 | 1.31 |
525 | 571 | 0.981183 | TTGGTTGGCACGGAGTCTAT | 59.019 | 50.000 | 0.00 | 0.00 | 41.61 | 1.98 |
526 | 572 | 0.034337 | GTTGGTTGGCACGGAGTCTA | 59.966 | 55.000 | 0.00 | 0.00 | 41.61 | 2.59 |
527 | 573 | 1.227853 | GTTGGTTGGCACGGAGTCT | 60.228 | 57.895 | 0.00 | 0.00 | 41.61 | 3.24 |
528 | 574 | 0.034337 | TAGTTGGTTGGCACGGAGTC | 59.966 | 55.000 | 0.00 | 0.00 | 41.61 | 3.36 |
530 | 576 | 0.034896 | ACTAGTTGGTTGGCACGGAG | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
531 | 577 | 1.340088 | TACTAGTTGGTTGGCACGGA | 58.660 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
532 | 578 | 2.172851 | TTACTAGTTGGTTGGCACGG | 57.827 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
533 | 579 | 3.135994 | ACTTTACTAGTTGGTTGGCACG | 58.864 | 45.455 | 0.00 | 0.00 | 31.29 | 5.34 |
534 | 580 | 4.453478 | GGTACTTTACTAGTTGGTTGGCAC | 59.547 | 45.833 | 0.00 | 0.00 | 38.33 | 5.01 |
535 | 581 | 4.348754 | AGGTACTTTACTAGTTGGTTGGCA | 59.651 | 41.667 | 0.00 | 0.00 | 38.33 | 4.92 |
536 | 582 | 4.903054 | AGGTACTTTACTAGTTGGTTGGC | 58.097 | 43.478 | 0.00 | 0.00 | 38.33 | 4.52 |
561 | 607 | 7.047891 | AGATAAATAAGACACGCCAATCAGAA | 58.952 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
570 | 616 | 4.694339 | AGTGGGAGATAAATAAGACACGC | 58.306 | 43.478 | 0.00 | 0.00 | 33.18 | 5.34 |
577 | 623 | 7.939781 | AGGGAAAAAGAGTGGGAGATAAATAA | 58.060 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
580 | 626 | 5.860648 | AGGGAAAAAGAGTGGGAGATAAA | 57.139 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
602 | 653 | 6.113411 | AGAAAAGAGTGAGGAAAAACTCGAA | 58.887 | 36.000 | 0.00 | 0.00 | 46.05 | 3.71 |
708 | 765 | 5.837437 | AGTAACTCGAATATCTGAGCCTTG | 58.163 | 41.667 | 4.52 | 0.00 | 35.61 | 3.61 |
727 | 784 | 7.391620 | AGGAACTTCAAAACGGATCATAGTAA | 58.608 | 34.615 | 0.00 | 0.00 | 27.25 | 2.24 |
730 | 787 | 7.843490 | TTAGGAACTTCAAAACGGATCATAG | 57.157 | 36.000 | 0.00 | 0.00 | 41.75 | 2.23 |
759 | 816 | 7.609146 | TCGAATACTACTACTTCTCTGGACAAA | 59.391 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
761 | 818 | 6.647229 | TCGAATACTACTACTTCTCTGGACA | 58.353 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
762 | 819 | 7.227116 | ACATCGAATACTACTACTTCTCTGGAC | 59.773 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
763 | 820 | 7.226918 | CACATCGAATACTACTACTTCTCTGGA | 59.773 | 40.741 | 0.00 | 0.00 | 0.00 | 3.86 |
764 | 821 | 7.356540 | CACATCGAATACTACTACTTCTCTGG | 58.643 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
765 | 822 | 6.853872 | GCACATCGAATACTACTACTTCTCTG | 59.146 | 42.308 | 0.00 | 0.00 | 0.00 | 3.35 |
766 | 823 | 6.768861 | AGCACATCGAATACTACTACTTCTCT | 59.231 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
767 | 824 | 6.961576 | AGCACATCGAATACTACTACTTCTC | 58.038 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
785 | 842 | 4.975794 | ACCTAGGGGTCTTAATTAGCACAT | 59.024 | 41.667 | 14.81 | 0.00 | 43.38 | 3.21 |
811 | 868 | 2.762535 | ACGGAGTCACCAAATCGAAT | 57.237 | 45.000 | 0.00 | 0.00 | 29.74 | 3.34 |
812 | 869 | 2.536761 | AACGGAGTCACCAAATCGAA | 57.463 | 45.000 | 0.00 | 0.00 | 45.00 | 3.71 |
833 | 890 | 3.893200 | TCTCGTATCCATTTGTCCGGTAT | 59.107 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
875 | 932 | 7.397221 | ACTTGGTATCTCATGACAAGAAATCA | 58.603 | 34.615 | 22.76 | 5.06 | 40.60 | 2.57 |
988 | 1045 | 4.883354 | CCTCATGGCCCCGGAAGC | 62.883 | 72.222 | 0.73 | 5.21 | 0.00 | 3.86 |
1029 | 1086 | 3.336468 | GCATGAGAGGATCCATAAGCAG | 58.664 | 50.000 | 15.82 | 0.00 | 33.66 | 4.24 |
1033 | 1090 | 1.002430 | GGCGCATGAGAGGATCCATAA | 59.998 | 52.381 | 15.82 | 0.00 | 33.66 | 1.90 |
1137 | 1194 | 1.728490 | CCTGCCTAGCCGATTTTGCC | 61.728 | 60.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1149 | 1206 | 2.683916 | CAGGTTGGTCTCCTGCCTA | 58.316 | 57.895 | 0.00 | 0.00 | 44.46 | 3.93 |
1211 | 1268 | 0.038159 | CAGAGGAACTGTGTCGTCCC | 60.038 | 60.000 | 0.00 | 0.00 | 45.37 | 4.46 |
1212 | 1269 | 3.498676 | CAGAGGAACTGTGTCGTCC | 57.501 | 57.895 | 0.00 | 0.21 | 45.37 | 4.79 |
1220 | 1277 | 2.900546 | AGGTAGTTGTCCAGAGGAACTG | 59.099 | 50.000 | 0.00 | 0.00 | 41.55 | 3.16 |
1242 | 1299 | 0.170561 | CTCCGAAGTACTGGGTGTCG | 59.829 | 60.000 | 11.79 | 9.43 | 0.00 | 4.35 |
1299 | 1356 | 7.175104 | AGTTTGAGCTCCCAGTATCAAAAATA | 58.825 | 34.615 | 12.15 | 0.00 | 41.75 | 1.40 |
1302 | 1359 | 4.985538 | AGTTTGAGCTCCCAGTATCAAAA | 58.014 | 39.130 | 12.15 | 0.00 | 41.75 | 2.44 |
1308 | 1365 | 2.224523 | CCACAAGTTTGAGCTCCCAGTA | 60.225 | 50.000 | 12.15 | 0.00 | 0.00 | 2.74 |
1311 | 1368 | 0.178992 | CCCACAAGTTTGAGCTCCCA | 60.179 | 55.000 | 12.15 | 0.00 | 0.00 | 4.37 |
1341 | 1398 | 6.368213 | CGAACTTACCGAAAAGTAGCATTTT | 58.632 | 36.000 | 3.25 | 0.00 | 38.76 | 1.82 |
1365 | 1424 | 0.957395 | CCACATGTCTGTCAGGCACC | 60.957 | 60.000 | 9.85 | 0.00 | 29.65 | 5.01 |
1371 | 1430 | 4.530710 | GGTAAGTACCACATGTCTGTCA | 57.469 | 45.455 | 0.00 | 0.00 | 45.73 | 3.58 |
1802 | 1868 | 5.066893 | CCTGCATACAAATATTGCACTGAGT | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1809 | 1958 | 5.530915 | TGGTACTCCTGCATACAAATATTGC | 59.469 | 40.000 | 0.00 | 0.00 | 34.23 | 3.56 |
1943 | 2092 | 1.479709 | CACTTCCCACGGAGATCTCT | 58.520 | 55.000 | 21.81 | 0.23 | 31.21 | 3.10 |
2150 | 2299 | 2.523440 | AACACGAGTTCACCTCCCA | 58.477 | 52.632 | 0.00 | 0.00 | 36.82 | 4.37 |
2217 | 2366 | 0.969894 | AGTAGCCTTTGCGAGTGACT | 59.030 | 50.000 | 0.00 | 0.00 | 44.33 | 3.41 |
2587 | 2745 | 0.250727 | TGGAGGGCAAGTGTAGCAAC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2593 | 2751 | 1.136828 | TAACAGTGGAGGGCAAGTGT | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2606 | 2764 | 6.426587 | ACAATCCTATTGCCAAGATAACAGT | 58.573 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2784 | 2948 | 5.643379 | AAATGGCAAATACGACTTGATGT | 57.357 | 34.783 | 0.00 | 0.00 | 0.00 | 3.06 |
2800 | 2964 | 6.966435 | AAATACACATGCAAGTAAAATGGC | 57.034 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
2846 | 3010 | 8.408601 | GGTTACTGCATAGTCATTCATGAAAAT | 58.591 | 33.333 | 13.09 | 0.00 | 38.75 | 1.82 |
2877 | 3041 | 9.706691 | TTCTCGTTCTTATTAACAACAGATTCT | 57.293 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
2890 | 3054 | 2.166664 | AGCCTCGCTTCTCGTTCTTATT | 59.833 | 45.455 | 0.00 | 0.00 | 33.89 | 1.40 |
2898 | 3062 | 0.317770 | GATCAGAGCCTCGCTTCTCG | 60.318 | 60.000 | 0.00 | 0.00 | 39.88 | 4.04 |
2928 | 3092 | 3.133691 | GACAACAGTCATCTCACAAGCA | 58.866 | 45.455 | 0.00 | 0.00 | 32.50 | 3.91 |
3011 | 3175 | 1.401905 | CGTTACCGGTAGTACTGACCC | 59.598 | 57.143 | 15.20 | 1.79 | 32.95 | 4.46 |
3028 | 3192 | 1.476488 | GAAAATACTGGCATGGGCGTT | 59.524 | 47.619 | 0.00 | 0.00 | 42.47 | 4.84 |
3036 | 3200 | 5.769662 | ACTTGACATTCAGAAAATACTGGCA | 59.230 | 36.000 | 0.00 | 0.00 | 38.31 | 4.92 |
3069 | 3233 | 2.926200 | GGAATCAGACTGTCATCACACG | 59.074 | 50.000 | 10.88 | 0.00 | 0.00 | 4.49 |
3077 | 3241 | 4.999950 | AGTTCACATTGGAATCAGACTGTC | 59.000 | 41.667 | 1.59 | 0.00 | 0.00 | 3.51 |
3134 | 3298 | 1.359459 | GGCAGTCGACGGTTGATTCC | 61.359 | 60.000 | 17.03 | 4.92 | 0.00 | 3.01 |
3244 | 3408 | 7.609056 | TCTTAACTGAAGGTATGACCAAGTAC | 58.391 | 38.462 | 0.00 | 0.00 | 41.95 | 2.73 |
3275 | 3490 | 2.019249 | ACATCGTTCAGATTGGGCATG | 58.981 | 47.619 | 0.00 | 0.00 | 37.52 | 4.06 |
3310 | 3526 | 0.519077 | GTAGGAAGCACAGCAGTTGC | 59.481 | 55.000 | 0.00 | 0.00 | 42.49 | 4.17 |
3320 | 3536 | 2.903784 | TGACTAAGGCAAGTAGGAAGCA | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
3321 | 3537 | 3.055747 | AGTGACTAAGGCAAGTAGGAAGC | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
3322 | 3538 | 4.464597 | AGAGTGACTAAGGCAAGTAGGAAG | 59.535 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
3323 | 3539 | 4.417437 | AGAGTGACTAAGGCAAGTAGGAA | 58.583 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
3324 | 3540 | 4.048970 | AGAGTGACTAAGGCAAGTAGGA | 57.951 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
3380 | 3596 | 2.694628 | TGCAGCACAAAGGAGAAACATT | 59.305 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
3381 | 3597 | 2.295349 | CTGCAGCACAAAGGAGAAACAT | 59.705 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
3433 | 3649 | 0.609662 | AACCCACTGATGCAAATGGC | 59.390 | 50.000 | 0.00 | 0.00 | 45.13 | 4.40 |
3480 | 3696 | 4.175337 | GCATACCAGAGCGGGCCA | 62.175 | 66.667 | 4.39 | 0.00 | 40.22 | 5.36 |
3515 | 3732 | 2.887783 | ACTGAAGAGCGAAGACTGAAGA | 59.112 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
3516 | 3733 | 3.057596 | AGACTGAAGAGCGAAGACTGAAG | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3518 | 3735 | 2.509569 | AGACTGAAGAGCGAAGACTGA | 58.490 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3519 | 3736 | 3.241701 | GAAGACTGAAGAGCGAAGACTG | 58.758 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3520 | 3737 | 2.887783 | TGAAGACTGAAGAGCGAAGACT | 59.112 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
3521 | 3738 | 2.983803 | GTGAAGACTGAAGAGCGAAGAC | 59.016 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3522 | 3739 | 2.029828 | GGTGAAGACTGAAGAGCGAAGA | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3523 | 3740 | 2.288457 | TGGTGAAGACTGAAGAGCGAAG | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
3524 | 3741 | 1.686587 | TGGTGAAGACTGAAGAGCGAA | 59.313 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
3525 | 3742 | 1.328279 | TGGTGAAGACTGAAGAGCGA | 58.672 | 50.000 | 0.00 | 0.00 | 0.00 | 4.93 |
3526 | 3743 | 2.266554 | GATGGTGAAGACTGAAGAGCG | 58.733 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
3527 | 3744 | 2.999355 | GTGATGGTGAAGACTGAAGAGC | 59.001 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3528 | 3745 | 4.533919 | AGTGATGGTGAAGACTGAAGAG | 57.466 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
3569 | 3786 | 2.482485 | GAAACGTCGATCAAACGGAC | 57.518 | 50.000 | 18.51 | 5.35 | 44.21 | 4.79 |
3595 | 3812 | 2.103094 | CTCCAAGTATCCTGCGATTCCA | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3657 | 3874 | 0.807667 | CGAACCCAATCCTGCTCTCG | 60.808 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
3687 | 3904 | 2.774234 | CCCTGATACACCAAGTCCTCAT | 59.226 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3953 | 4192 | 3.605922 | CGTGCTAAGAAAATGTGCGTTGA | 60.606 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3957 | 4196 | 1.196808 | ACCGTGCTAAGAAAATGTGCG | 59.803 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
3965 | 4204 | 4.401202 | TGTCTCATGATACCGTGCTAAGAA | 59.599 | 41.667 | 8.60 | 0.00 | 0.00 | 2.52 |
4014 | 4253 | 8.243426 | TCCAATACTCAAAAGAACATACATTGC | 58.757 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
4038 | 4277 | 5.725325 | ACGGAGGCTAATTTAGATACTCC | 57.275 | 43.478 | 20.83 | 20.83 | 38.38 | 3.85 |
4039 | 4278 | 9.176460 | ACTATACGGAGGCTAATTTAGATACTC | 57.824 | 37.037 | 7.63 | 10.10 | 0.00 | 2.59 |
4061 | 4300 | 3.538591 | GTTAGCCGCCAAAACCTACTAT | 58.461 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
4072 | 4311 | 0.679640 | CTCCATTTGGTTAGCCGCCA | 60.680 | 55.000 | 0.00 | 0.00 | 37.67 | 5.69 |
4076 | 4315 | 0.451783 | CACGCTCCATTTGGTTAGCC | 59.548 | 55.000 | 5.08 | 0.00 | 32.99 | 3.93 |
4077 | 4316 | 0.451783 | CCACGCTCCATTTGGTTAGC | 59.548 | 55.000 | 0.00 | 0.00 | 36.34 | 3.09 |
4078 | 4317 | 1.821216 | ACCACGCTCCATTTGGTTAG | 58.179 | 50.000 | 0.00 | 0.00 | 40.98 | 2.34 |
4080 | 4319 | 3.125520 | AACCACGCTCCATTTGGTT | 57.874 | 47.368 | 0.00 | 0.00 | 46.66 | 3.67 |
4081 | 4320 | 0.673437 | CAAACCACGCTCCATTTGGT | 59.327 | 50.000 | 0.00 | 0.00 | 45.95 | 3.67 |
4082 | 4321 | 0.673437 | ACAAACCACGCTCCATTTGG | 59.327 | 50.000 | 0.00 | 0.00 | 36.55 | 3.28 |
4083 | 4322 | 1.662876 | CGACAAACCACGCTCCATTTG | 60.663 | 52.381 | 0.00 | 0.00 | 37.91 | 2.32 |
4084 | 4323 | 0.591170 | CGACAAACCACGCTCCATTT | 59.409 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4085 | 4324 | 0.250124 | TCGACAAACCACGCTCCATT | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4086 | 4325 | 0.949105 | GTCGACAAACCACGCTCCAT | 60.949 | 55.000 | 11.55 | 0.00 | 0.00 | 3.41 |
4087 | 4326 | 1.593209 | GTCGACAAACCACGCTCCA | 60.593 | 57.895 | 11.55 | 0.00 | 0.00 | 3.86 |
4088 | 4327 | 2.315386 | GGTCGACAAACCACGCTCC | 61.315 | 63.158 | 18.91 | 0.00 | 39.27 | 4.70 |
4089 | 4328 | 1.593209 | TGGTCGACAAACCACGCTC | 60.593 | 57.895 | 18.91 | 0.00 | 44.40 | 5.03 |
4090 | 4329 | 2.502093 | TGGTCGACAAACCACGCT | 59.498 | 55.556 | 18.91 | 0.00 | 44.40 | 5.07 |
4097 | 4336 | 3.388676 | TCCCTAGTCTTTTGGTCGACAAA | 59.611 | 43.478 | 18.91 | 10.11 | 46.82 | 2.83 |
4098 | 4337 | 2.967201 | TCCCTAGTCTTTTGGTCGACAA | 59.033 | 45.455 | 18.91 | 2.10 | 37.28 | 3.18 |
4099 | 4338 | 2.561419 | CTCCCTAGTCTTTTGGTCGACA | 59.439 | 50.000 | 18.91 | 0.27 | 32.68 | 4.35 |
4100 | 4339 | 2.094130 | CCTCCCTAGTCTTTTGGTCGAC | 60.094 | 54.545 | 7.13 | 7.13 | 0.00 | 4.20 |
4101 | 4340 | 2.176889 | CCTCCCTAGTCTTTTGGTCGA | 58.823 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
4102 | 4341 | 1.900486 | ACCTCCCTAGTCTTTTGGTCG | 59.100 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
4103 | 4342 | 4.368565 | AAACCTCCCTAGTCTTTTGGTC | 57.631 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4104 | 4343 | 4.288887 | CCTAAACCTCCCTAGTCTTTTGGT | 59.711 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
4105 | 4344 | 4.288887 | ACCTAAACCTCCCTAGTCTTTTGG | 59.711 | 45.833 | 0.00 | 0.00 | 0.00 | 3.28 |
4106 | 4345 | 5.500546 | ACCTAAACCTCCCTAGTCTTTTG | 57.499 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
4107 | 4346 | 7.825983 | AATACCTAAACCTCCCTAGTCTTTT | 57.174 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4108 | 4347 | 7.825983 | AAATACCTAAACCTCCCTAGTCTTT | 57.174 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4109 | 4348 | 7.239143 | ACAAAATACCTAAACCTCCCTAGTCTT | 59.761 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4110 | 4349 | 6.734281 | ACAAAATACCTAAACCTCCCTAGTCT | 59.266 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
4111 | 4350 | 6.955364 | ACAAAATACCTAAACCTCCCTAGTC | 58.045 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4112 | 4351 | 6.351626 | CGACAAAATACCTAAACCTCCCTAGT | 60.352 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
4113 | 4352 | 6.047231 | CGACAAAATACCTAAACCTCCCTAG | 58.953 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4114 | 4353 | 5.721000 | TCGACAAAATACCTAAACCTCCCTA | 59.279 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4115 | 4354 | 4.533311 | TCGACAAAATACCTAAACCTCCCT | 59.467 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
4116 | 4355 | 4.633126 | GTCGACAAAATACCTAAACCTCCC | 59.367 | 45.833 | 11.55 | 0.00 | 0.00 | 4.30 |
4117 | 4356 | 4.633126 | GGTCGACAAAATACCTAAACCTCC | 59.367 | 45.833 | 18.91 | 0.00 | 0.00 | 4.30 |
4118 | 4357 | 5.240121 | TGGTCGACAAAATACCTAAACCTC | 58.760 | 41.667 | 18.91 | 0.00 | 34.23 | 3.85 |
4119 | 4358 | 5.231702 | TGGTCGACAAAATACCTAAACCT | 57.768 | 39.130 | 18.91 | 0.00 | 34.23 | 3.50 |
4120 | 4359 | 5.945466 | TTGGTCGACAAAATACCTAAACC | 57.055 | 39.130 | 18.91 | 0.00 | 35.79 | 3.27 |
4147 | 4386 | 3.036091 | CCGAATACCTAAACCTCCCTGA | 58.964 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4229 | 4468 | 5.540911 | CAATAGAGTTTGCCAAACACCATT | 58.459 | 37.500 | 21.45 | 13.11 | 43.79 | 3.16 |
4275 | 4536 | 3.775261 | AAATGCAAATCACCAGGCTTT | 57.225 | 38.095 | 0.00 | 0.00 | 0.00 | 3.51 |
4289 | 4550 | 1.969208 | TCATGTCAGCCCAAAAATGCA | 59.031 | 42.857 | 0.00 | 0.00 | 0.00 | 3.96 |
4304 | 4566 | 6.173339 | AGATGTTTCTTTACCGTCATCATGT | 58.827 | 36.000 | 0.00 | 0.00 | 35.56 | 3.21 |
4305 | 4567 | 6.668541 | AGATGTTTCTTTACCGTCATCATG | 57.331 | 37.500 | 0.00 | 0.00 | 35.56 | 3.07 |
4475 | 4739 | 1.952296 | CATTATGTGGGGAAGAGCTGC | 59.048 | 52.381 | 0.00 | 0.00 | 0.00 | 5.25 |
4490 | 4754 | 9.573166 | TCAAATCCCTTCGAAATGATACATTAT | 57.427 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4491 | 4755 | 8.972458 | TCAAATCCCTTCGAAATGATACATTA | 57.028 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
4504 | 4768 | 0.746659 | GGGCCAATCAAATCCCTTCG | 59.253 | 55.000 | 4.39 | 0.00 | 35.87 | 3.79 |
4506 | 4770 | 0.718408 | AGGGGCCAATCAAATCCCTT | 59.282 | 50.000 | 4.39 | 0.00 | 45.03 | 3.95 |
4525 | 4791 | 0.754587 | TGTTGCCATGACACAAGCCA | 60.755 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
4527 | 4793 | 1.542915 | AGATGTTGCCATGACACAAGC | 59.457 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
4560 | 4826 | 8.137437 | CGCCCTTATGTCAAATTAATCAAATCT | 58.863 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
4572 | 4838 | 1.283613 | ACATCCCGCCCTTATGTCAAA | 59.716 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
4579 | 4845 | 1.540267 | CAAAACACATCCCGCCCTTA | 58.460 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4605 | 4871 | 5.780793 | AGTGAAAGACCCTGATGTAGTTAGT | 59.219 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4617 | 4883 | 3.041946 | AGAGTCAACAGTGAAAGACCCT | 58.958 | 45.455 | 0.00 | 0.00 | 34.87 | 4.34 |
4629 | 4895 | 6.225981 | AGTGCATGATACATAGAGTCAACA | 57.774 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.