Multiple sequence alignment - TraesCS7A01G377100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G377100 | chr7A | 100.000 | 2699 | 0 | 0 | 2550 | 5248 | 550302048 | 550299350 | 0.000000e+00 | 4985.0 |
1 | TraesCS7A01G377100 | chr7A | 100.000 | 2269 | 0 | 0 | 1 | 2269 | 550304597 | 550302329 | 0.000000e+00 | 4191.0 |
2 | TraesCS7A01G377100 | chr7A | 96.241 | 266 | 10 | 0 | 1469 | 1734 | 530242490 | 530242225 | 2.240000e-118 | 436.0 |
3 | TraesCS7A01G377100 | chr7A | 95.489 | 266 | 12 | 0 | 1469 | 1734 | 551457094 | 551457359 | 4.860000e-115 | 425.0 |
4 | TraesCS7A01G377100 | chr7A | 95.149 | 268 | 13 | 0 | 1467 | 1734 | 439154569 | 439154302 | 1.750000e-114 | 424.0 |
5 | TraesCS7A01G377100 | chr7A | 94.424 | 269 | 15 | 0 | 1467 | 1735 | 404467235 | 404466967 | 1.050000e-111 | 414.0 |
6 | TraesCS7A01G377100 | chr7B | 88.347 | 2746 | 205 | 43 | 2550 | 5248 | 509568069 | 509565392 | 0.000000e+00 | 3192.0 |
7 | TraesCS7A01G377100 | chr7B | 93.524 | 911 | 48 | 3 | 564 | 1463 | 509569737 | 509568827 | 0.000000e+00 | 1345.0 |
8 | TraesCS7A01G377100 | chr7B | 90.431 | 418 | 32 | 5 | 1730 | 2144 | 509568829 | 509568417 | 1.290000e-150 | 544.0 |
9 | TraesCS7A01G377100 | chr7B | 95.238 | 63 | 3 | 0 | 2146 | 2208 | 509568283 | 509568221 | 3.340000e-17 | 100.0 |
10 | TraesCS7A01G377100 | chr7B | 84.375 | 96 | 7 | 7 | 423 | 516 | 509569840 | 509569751 | 2.600000e-13 | 87.9 |
11 | TraesCS7A01G377100 | chr7D | 95.779 | 1374 | 51 | 5 | 3876 | 5248 | 483921432 | 483920065 | 0.000000e+00 | 2209.0 |
12 | TraesCS7A01G377100 | chr7D | 95.135 | 1336 | 55 | 5 | 2550 | 3879 | 483923084 | 483921753 | 0.000000e+00 | 2098.0 |
13 | TraesCS7A01G377100 | chr7D | 94.858 | 914 | 33 | 3 | 566 | 1465 | 483924566 | 483923653 | 0.000000e+00 | 1415.0 |
14 | TraesCS7A01G377100 | chr7D | 94.167 | 240 | 10 | 2 | 1972 | 2208 | 483923444 | 483923206 | 3.860000e-96 | 363.0 |
15 | TraesCS7A01G377100 | chr7D | 94.286 | 140 | 8 | 0 | 1730 | 1869 | 483923657 | 483923518 | 1.140000e-51 | 215.0 |
16 | TraesCS7A01G377100 | chr7D | 87.097 | 62 | 3 | 4 | 2207 | 2266 | 633489750 | 633489808 | 1.220000e-06 | 65.8 |
17 | TraesCS7A01G377100 | chr3A | 95.865 | 266 | 11 | 0 | 1467 | 1732 | 57093760 | 57093495 | 1.040000e-116 | 431.0 |
18 | TraesCS7A01G377100 | chr3A | 95.113 | 266 | 13 | 0 | 1467 | 1732 | 194834533 | 194834268 | 2.260000e-113 | 420.0 |
19 | TraesCS7A01G377100 | chr3A | 81.463 | 205 | 34 | 4 | 1179 | 1381 | 583243125 | 583243327 | 1.170000e-36 | 165.0 |
20 | TraesCS7A01G377100 | chr3A | 95.833 | 48 | 0 | 1 | 2222 | 2269 | 214096053 | 214096008 | 5.640000e-10 | 76.8 |
21 | TraesCS7A01G377100 | chr3A | 95.652 | 46 | 0 | 1 | 2222 | 2267 | 553876254 | 553876211 | 7.290000e-09 | 73.1 |
22 | TraesCS7A01G377100 | chr4A | 95.113 | 266 | 13 | 0 | 1467 | 1732 | 185428253 | 185428518 | 2.260000e-113 | 420.0 |
23 | TraesCS7A01G377100 | chr6A | 94.776 | 268 | 14 | 0 | 1467 | 1734 | 59094410 | 59094143 | 8.130000e-113 | 418.0 |
24 | TraesCS7A01G377100 | chr6A | 93.750 | 48 | 1 | 1 | 2222 | 2269 | 202114131 | 202114086 | 2.620000e-08 | 71.3 |
25 | TraesCS7A01G377100 | chr2A | 94.403 | 268 | 15 | 0 | 1467 | 1734 | 51317220 | 51316953 | 3.780000e-111 | 412.0 |
26 | TraesCS7A01G377100 | chr2A | 95.833 | 48 | 0 | 1 | 2222 | 2269 | 183797389 | 183797344 | 5.640000e-10 | 76.8 |
27 | TraesCS7A01G377100 | chr2A | 95.833 | 48 | 0 | 1 | 2222 | 2269 | 726979910 | 726979865 | 5.640000e-10 | 76.8 |
28 | TraesCS7A01G377100 | chr2A | 81.111 | 90 | 17 | 0 | 1289 | 1378 | 612835024 | 612834935 | 7.290000e-09 | 73.1 |
29 | TraesCS7A01G377100 | chr3D | 81.463 | 205 | 34 | 4 | 1179 | 1381 | 442173333 | 442173535 | 1.170000e-36 | 165.0 |
30 | TraesCS7A01G377100 | chr3B | 80.976 | 205 | 35 | 4 | 1179 | 1381 | 579450896 | 579451098 | 5.440000e-35 | 159.0 |
31 | TraesCS7A01G377100 | chr3B | 91.429 | 70 | 6 | 0 | 1912 | 1981 | 778340643 | 778340712 | 4.330000e-16 | 97.1 |
32 | TraesCS7A01G377100 | chr3B | 92.424 | 66 | 4 | 1 | 1904 | 1968 | 487045488 | 487045553 | 5.600000e-15 | 93.5 |
33 | TraesCS7A01G377100 | chr2B | 88.421 | 95 | 8 | 3 | 1895 | 1987 | 247368537 | 247368630 | 1.540000e-20 | 111.0 |
34 | TraesCS7A01G377100 | chr2B | 89.474 | 76 | 8 | 0 | 1912 | 1987 | 331012787 | 331012712 | 4.330000e-16 | 97.1 |
35 | TraesCS7A01G377100 | chr2D | 88.158 | 76 | 9 | 0 | 1912 | 1987 | 218045340 | 218045415 | 2.010000e-14 | 91.6 |
36 | TraesCS7A01G377100 | chr2D | 81.111 | 90 | 17 | 0 | 1289 | 1378 | 471055944 | 471055855 | 7.290000e-09 | 73.1 |
37 | TraesCS7A01G377100 | chr4B | 87.342 | 79 | 9 | 1 | 1900 | 1978 | 31873757 | 31873680 | 7.240000e-14 | 89.8 |
38 | TraesCS7A01G377100 | chr5D | 87.838 | 74 | 9 | 0 | 1908 | 1981 | 9120390 | 9120317 | 2.600000e-13 | 87.9 |
39 | TraesCS7A01G377100 | chr5D | 84.884 | 86 | 10 | 2 | 1896 | 1981 | 5804146 | 5804064 | 3.370000e-12 | 84.2 |
40 | TraesCS7A01G377100 | chr6D | 92.308 | 52 | 1 | 2 | 2215 | 2266 | 160869567 | 160869615 | 2.620000e-08 | 71.3 |
41 | TraesCS7A01G377100 | chr1A | 93.750 | 48 | 1 | 1 | 2222 | 2269 | 308973949 | 308973994 | 2.620000e-08 | 71.3 |
42 | TraesCS7A01G377100 | chr1A | 93.750 | 48 | 1 | 1 | 2222 | 2269 | 574913759 | 574913714 | 2.620000e-08 | 71.3 |
43 | TraesCS7A01G377100 | chr1A | 87.500 | 56 | 7 | 0 | 1289 | 1344 | 551592912 | 551592857 | 1.220000e-06 | 65.8 |
44 | TraesCS7A01G377100 | chr1B | 87.500 | 56 | 7 | 0 | 1289 | 1344 | 631967499 | 631967444 | 1.220000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G377100 | chr7A | 550299350 | 550304597 | 5247 | True | 4588.00 | 4985 | 100.000 | 1 | 5248 | 2 | chr7A.!!$R4 | 5247 |
1 | TraesCS7A01G377100 | chr7B | 509565392 | 509569840 | 4448 | True | 1053.78 | 3192 | 90.383 | 423 | 5248 | 5 | chr7B.!!$R1 | 4825 |
2 | TraesCS7A01G377100 | chr7D | 483920065 | 483924566 | 4501 | True | 1260.00 | 2209 | 94.845 | 566 | 5248 | 5 | chr7D.!!$R1 | 4682 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
540 | 541 | 0.323087 | GCCCGTAAACCCACTCCATT | 60.323 | 55.0 | 0.0 | 0.0 | 0.0 | 3.16 | F |
1463 | 1480 | 0.034616 | AGTTTGCTCGCTCTGCTCTT | 59.965 | 50.0 | 0.0 | 0.0 | 0.0 | 2.85 | F |
3321 | 3495 | 0.321653 | GGTGGCAGTCCTAAGTGTGG | 60.322 | 60.0 | 0.0 | 0.0 | 0.0 | 4.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2040 | 2064 | 1.202533 | AGCATAGCACATACCGTCACC | 60.203 | 52.381 | 0.0 | 0.0 | 0.00 | 4.02 | R |
3445 | 3619 | 5.782893 | TTTTAATGGGCAATATCTTCCCG | 57.217 | 39.130 | 0.0 | 0.0 | 42.98 | 5.14 | R |
4380 | 4907 | 1.404181 | CGTCGTCATGTCCCAGATGTT | 60.404 | 52.381 | 0.0 | 0.0 | 0.00 | 2.71 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
175 | 176 | 9.890629 | ATGCATCTTTAACACTTTCTAGATACA | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
176 | 177 | 9.890629 | TGCATCTTTAACACTTTCTAGATACAT | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
337 | 338 | 7.452630 | TTTTATGTTTGCTTTTTCCGTACAC | 57.547 | 32.000 | 0.00 | 0.00 | 0.00 | 2.90 |
338 | 339 | 4.640789 | ATGTTTGCTTTTTCCGTACACA | 57.359 | 36.364 | 0.00 | 0.00 | 0.00 | 3.72 |
339 | 340 | 4.640789 | TGTTTGCTTTTTCCGTACACAT | 57.359 | 36.364 | 0.00 | 0.00 | 0.00 | 3.21 |
340 | 341 | 5.752892 | TGTTTGCTTTTTCCGTACACATA | 57.247 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
341 | 342 | 5.753744 | TGTTTGCTTTTTCCGTACACATAG | 58.246 | 37.500 | 0.00 | 0.00 | 0.00 | 2.23 |
342 | 343 | 5.297278 | TGTTTGCTTTTTCCGTACACATAGT | 59.703 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
343 | 344 | 6.482641 | TGTTTGCTTTTTCCGTACACATAGTA | 59.517 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
456 | 457 | 8.994170 | CAAAAGTAAAGAAAACAGTGGGAAAAA | 58.006 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
505 | 506 | 3.452786 | CTCGCTTCAGGAGGCCGA | 61.453 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
506 | 507 | 3.423162 | CTCGCTTCAGGAGGCCGAG | 62.423 | 68.421 | 0.00 | 9.43 | 32.03 | 4.63 |
507 | 508 | 4.521062 | CGCTTCAGGAGGCCGAGG | 62.521 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
508 | 509 | 4.847444 | GCTTCAGGAGGCCGAGGC | 62.847 | 72.222 | 5.37 | 5.37 | 41.06 | 4.70 |
509 | 510 | 3.393970 | CTTCAGGAGGCCGAGGCA | 61.394 | 66.667 | 16.65 | 0.00 | 44.11 | 4.75 |
510 | 511 | 3.382803 | CTTCAGGAGGCCGAGGCAG | 62.383 | 68.421 | 16.65 | 0.00 | 44.11 | 4.85 |
528 | 529 | 4.841861 | CCATTCGCGGGCCCGTAA | 62.842 | 66.667 | 42.53 | 34.86 | 42.09 | 3.18 |
529 | 530 | 2.820479 | CATTCGCGGGCCCGTAAA | 60.820 | 61.111 | 42.53 | 34.46 | 42.09 | 2.01 |
530 | 531 | 2.820922 | ATTCGCGGGCCCGTAAAC | 60.821 | 61.111 | 42.53 | 26.19 | 42.09 | 2.01 |
536 | 537 | 2.045634 | GGGCCCGTAAACCCACTC | 60.046 | 66.667 | 5.69 | 0.00 | 46.22 | 3.51 |
537 | 538 | 2.045634 | GGCCCGTAAACCCACTCC | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
538 | 539 | 2.751688 | GCCCGTAAACCCACTCCA | 59.248 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
539 | 540 | 1.301954 | GCCCGTAAACCCACTCCAT | 59.698 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
540 | 541 | 0.323087 | GCCCGTAAACCCACTCCATT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
541 | 542 | 1.746470 | CCCGTAAACCCACTCCATTC | 58.254 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
542 | 543 | 1.365699 | CCGTAAACCCACTCCATTCG | 58.634 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
543 | 544 | 1.066716 | CCGTAAACCCACTCCATTCGA | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
544 | 545 | 2.268298 | CGTAAACCCACTCCATTCGAG | 58.732 | 52.381 | 0.00 | 0.00 | 44.95 | 4.04 |
579 | 580 | 8.424274 | AAGTAAAGAAAACATTCTGCCTTTTG | 57.576 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
714 | 715 | 1.308069 | ATTGCAAAGCCATCGCGAGT | 61.308 | 50.000 | 16.66 | 0.00 | 41.18 | 4.18 |
723 | 724 | 1.528542 | CATCGCGAGTCCCTCCCTA | 60.529 | 63.158 | 16.66 | 0.00 | 0.00 | 3.53 |
779 | 782 | 2.631160 | TCGGTTTCTCCAAAGCTTCA | 57.369 | 45.000 | 0.00 | 0.00 | 37.78 | 3.02 |
848 | 856 | 7.519328 | GCTCCCTAGATTAGATTCGATCGTATC | 60.519 | 44.444 | 22.71 | 22.71 | 0.00 | 2.24 |
866 | 874 | 7.135089 | TCGTATCGAATTGAATTGGTTTTGA | 57.865 | 32.000 | 0.00 | 0.00 | 31.06 | 2.69 |
878 | 886 | 1.337635 | TGGTTTTGATTGGATTGCGCC | 60.338 | 47.619 | 4.18 | 0.00 | 0.00 | 6.53 |
895 | 903 | 0.378610 | GCCGGAGTGAATTTAGCTGC | 59.621 | 55.000 | 5.05 | 0.00 | 0.00 | 5.25 |
906 | 914 | 5.975939 | GTGAATTTAGCTGCAGATTGGATTC | 59.024 | 40.000 | 20.43 | 19.67 | 0.00 | 2.52 |
909 | 917 | 1.661341 | AGCTGCAGATTGGATTCGTC | 58.339 | 50.000 | 20.43 | 0.00 | 0.00 | 4.20 |
928 | 945 | 1.483827 | TCTCGCTGATGCATTTCCTCT | 59.516 | 47.619 | 0.00 | 0.00 | 39.64 | 3.69 |
929 | 946 | 1.598132 | CTCGCTGATGCATTTCCTCTG | 59.402 | 52.381 | 0.00 | 0.00 | 39.64 | 3.35 |
1110 | 1127 | 1.012124 | CGACGACGATGAGACCGAG | 60.012 | 63.158 | 0.00 | 0.00 | 42.66 | 4.63 |
1168 | 1185 | 3.697747 | CTGTTGGGACCGGCGGTA | 61.698 | 66.667 | 34.29 | 14.83 | 35.25 | 4.02 |
1197 | 1214 | 4.787871 | GGGCCTCCGATGATGAAG | 57.212 | 61.111 | 0.84 | 0.00 | 0.00 | 3.02 |
1463 | 1480 | 0.034616 | AGTTTGCTCGCTCTGCTCTT | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1464 | 1481 | 1.273606 | AGTTTGCTCGCTCTGCTCTTA | 59.726 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
1465 | 1482 | 1.658095 | GTTTGCTCGCTCTGCTCTTAG | 59.342 | 52.381 | 0.00 | 0.00 | 0.00 | 2.18 |
1466 | 1483 | 1.177401 | TTGCTCGCTCTGCTCTTAGA | 58.823 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1467 | 1484 | 0.453793 | TGCTCGCTCTGCTCTTAGAC | 59.546 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1468 | 1485 | 0.453793 | GCTCGCTCTGCTCTTAGACA | 59.546 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1469 | 1486 | 1.533756 | GCTCGCTCTGCTCTTAGACAG | 60.534 | 57.143 | 5.78 | 5.78 | 35.15 | 3.51 |
1470 | 1487 | 1.742831 | CTCGCTCTGCTCTTAGACAGT | 59.257 | 52.381 | 10.11 | 0.00 | 35.37 | 3.55 |
1471 | 1488 | 1.470494 | TCGCTCTGCTCTTAGACAGTG | 59.530 | 52.381 | 10.11 | 9.24 | 35.37 | 3.66 |
1472 | 1489 | 1.468908 | CGCTCTGCTCTTAGACAGTGG | 60.469 | 57.143 | 10.11 | 7.12 | 35.37 | 4.00 |
1473 | 1490 | 1.134848 | GCTCTGCTCTTAGACAGTGGG | 60.135 | 57.143 | 10.11 | 5.50 | 35.37 | 4.61 |
1474 | 1491 | 2.451490 | CTCTGCTCTTAGACAGTGGGA | 58.549 | 52.381 | 10.11 | 0.00 | 35.37 | 4.37 |
1475 | 1492 | 2.426738 | CTCTGCTCTTAGACAGTGGGAG | 59.573 | 54.545 | 10.11 | 0.00 | 35.37 | 4.30 |
1476 | 1493 | 2.175202 | CTGCTCTTAGACAGTGGGAGT | 58.825 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1477 | 1494 | 3.010250 | TCTGCTCTTAGACAGTGGGAGTA | 59.990 | 47.826 | 10.11 | 0.00 | 35.37 | 2.59 |
1478 | 1495 | 3.764434 | CTGCTCTTAGACAGTGGGAGTAA | 59.236 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
1479 | 1496 | 3.510360 | TGCTCTTAGACAGTGGGAGTAAC | 59.490 | 47.826 | 0.00 | 0.00 | 0.00 | 2.50 |
1480 | 1497 | 3.764972 | GCTCTTAGACAGTGGGAGTAACT | 59.235 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
1481 | 1498 | 4.221041 | GCTCTTAGACAGTGGGAGTAACTT | 59.779 | 45.833 | 0.00 | 0.00 | 0.00 | 2.66 |
1482 | 1499 | 5.622687 | GCTCTTAGACAGTGGGAGTAACTTC | 60.623 | 48.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1483 | 1500 | 5.391256 | TCTTAGACAGTGGGAGTAACTTCA | 58.609 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1484 | 1501 | 5.477291 | TCTTAGACAGTGGGAGTAACTTCAG | 59.523 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1485 | 1502 | 2.300437 | AGACAGTGGGAGTAACTTCAGC | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1486 | 1503 | 2.037251 | GACAGTGGGAGTAACTTCAGCA | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1487 | 1504 | 2.037772 | ACAGTGGGAGTAACTTCAGCAG | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1488 | 1505 | 2.037772 | CAGTGGGAGTAACTTCAGCAGT | 59.962 | 50.000 | 0.00 | 0.00 | 37.30 | 4.40 |
1489 | 1506 | 3.258372 | CAGTGGGAGTAACTTCAGCAGTA | 59.742 | 47.826 | 0.00 | 0.00 | 32.94 | 2.74 |
1490 | 1507 | 3.901844 | AGTGGGAGTAACTTCAGCAGTAA | 59.098 | 43.478 | 0.00 | 0.00 | 32.94 | 2.24 |
1491 | 1508 | 3.995048 | GTGGGAGTAACTTCAGCAGTAAC | 59.005 | 47.826 | 0.00 | 0.00 | 32.94 | 2.50 |
1492 | 1509 | 3.644265 | TGGGAGTAACTTCAGCAGTAACA | 59.356 | 43.478 | 0.00 | 0.00 | 32.94 | 2.41 |
1493 | 1510 | 4.286032 | TGGGAGTAACTTCAGCAGTAACAT | 59.714 | 41.667 | 0.00 | 0.00 | 32.94 | 2.71 |
1494 | 1511 | 4.870991 | GGGAGTAACTTCAGCAGTAACATC | 59.129 | 45.833 | 0.00 | 0.00 | 32.94 | 3.06 |
1495 | 1512 | 4.563184 | GGAGTAACTTCAGCAGTAACATCG | 59.437 | 45.833 | 0.00 | 0.00 | 32.94 | 3.84 |
1496 | 1513 | 5.386958 | AGTAACTTCAGCAGTAACATCGA | 57.613 | 39.130 | 0.00 | 0.00 | 32.94 | 3.59 |
1497 | 1514 | 5.403246 | AGTAACTTCAGCAGTAACATCGAG | 58.597 | 41.667 | 0.00 | 0.00 | 32.94 | 4.04 |
1498 | 1515 | 3.944055 | ACTTCAGCAGTAACATCGAGT | 57.056 | 42.857 | 0.00 | 0.00 | 31.97 | 4.18 |
1499 | 1516 | 3.839293 | ACTTCAGCAGTAACATCGAGTC | 58.161 | 45.455 | 0.00 | 0.00 | 31.97 | 3.36 |
1500 | 1517 | 2.941453 | TCAGCAGTAACATCGAGTCC | 57.059 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1501 | 1518 | 2.167662 | TCAGCAGTAACATCGAGTCCA | 58.832 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1502 | 1519 | 2.560981 | TCAGCAGTAACATCGAGTCCAA | 59.439 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
1503 | 1520 | 2.668457 | CAGCAGTAACATCGAGTCCAAC | 59.332 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1504 | 1521 | 2.563179 | AGCAGTAACATCGAGTCCAACT | 59.437 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1505 | 1522 | 3.006967 | AGCAGTAACATCGAGTCCAACTT | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
1506 | 1523 | 4.219944 | AGCAGTAACATCGAGTCCAACTTA | 59.780 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
1507 | 1524 | 4.927425 | GCAGTAACATCGAGTCCAACTTAA | 59.073 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
1508 | 1525 | 5.163982 | GCAGTAACATCGAGTCCAACTTAAC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1509 | 1526 | 5.924254 | CAGTAACATCGAGTCCAACTTAACA | 59.076 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1510 | 1527 | 6.422701 | CAGTAACATCGAGTCCAACTTAACAA | 59.577 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
1511 | 1528 | 6.987992 | AGTAACATCGAGTCCAACTTAACAAA | 59.012 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
1512 | 1529 | 6.877611 | AACATCGAGTCCAACTTAACAAAT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1513 | 1530 | 6.877611 | ACATCGAGTCCAACTTAACAAATT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1514 | 1531 | 7.272037 | ACATCGAGTCCAACTTAACAAATTT | 57.728 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1515 | 1532 | 7.138736 | ACATCGAGTCCAACTTAACAAATTTG | 58.861 | 34.615 | 16.67 | 16.67 | 0.00 | 2.32 |
1516 | 1533 | 6.928979 | TCGAGTCCAACTTAACAAATTTGA | 57.071 | 33.333 | 24.64 | 0.00 | 0.00 | 2.69 |
1517 | 1534 | 7.504924 | TCGAGTCCAACTTAACAAATTTGAT | 57.495 | 32.000 | 24.64 | 15.39 | 0.00 | 2.57 |
1518 | 1535 | 7.936584 | TCGAGTCCAACTTAACAAATTTGATT | 58.063 | 30.769 | 24.64 | 15.92 | 0.00 | 2.57 |
1519 | 1536 | 9.058174 | TCGAGTCCAACTTAACAAATTTGATTA | 57.942 | 29.630 | 24.64 | 15.02 | 0.00 | 1.75 |
1520 | 1537 | 9.840427 | CGAGTCCAACTTAACAAATTTGATTAT | 57.160 | 29.630 | 24.64 | 9.85 | 0.00 | 1.28 |
1524 | 1541 | 9.703892 | TCCAACTTAACAAATTTGATTATGTGG | 57.296 | 29.630 | 24.64 | 20.68 | 0.00 | 4.17 |
1525 | 1542 | 8.442384 | CCAACTTAACAAATTTGATTATGTGGC | 58.558 | 33.333 | 24.64 | 0.00 | 0.00 | 5.01 |
1526 | 1543 | 8.986847 | CAACTTAACAAATTTGATTATGTGGCA | 58.013 | 29.630 | 24.64 | 3.58 | 0.00 | 4.92 |
1527 | 1544 | 9.553064 | AACTTAACAAATTTGATTATGTGGCAA | 57.447 | 25.926 | 24.64 | 1.06 | 0.00 | 4.52 |
1528 | 1545 | 9.723601 | ACTTAACAAATTTGATTATGTGGCAAT | 57.276 | 25.926 | 24.64 | 0.00 | 0.00 | 3.56 |
1529 | 1546 | 9.976255 | CTTAACAAATTTGATTATGTGGCAATG | 57.024 | 29.630 | 24.64 | 0.00 | 0.00 | 2.82 |
1530 | 1547 | 9.716531 | TTAACAAATTTGATTATGTGGCAATGA | 57.283 | 25.926 | 24.64 | 0.00 | 0.00 | 2.57 |
1531 | 1548 | 7.837202 | ACAAATTTGATTATGTGGCAATGAG | 57.163 | 32.000 | 24.64 | 0.00 | 0.00 | 2.90 |
1532 | 1549 | 7.388437 | ACAAATTTGATTATGTGGCAATGAGT | 58.612 | 30.769 | 24.64 | 0.00 | 0.00 | 3.41 |
1533 | 1550 | 7.879160 | ACAAATTTGATTATGTGGCAATGAGTT | 59.121 | 29.630 | 24.64 | 0.00 | 0.00 | 3.01 |
1534 | 1551 | 9.368674 | CAAATTTGATTATGTGGCAATGAGTTA | 57.631 | 29.630 | 13.08 | 0.00 | 0.00 | 2.24 |
1535 | 1552 | 9.941325 | AAATTTGATTATGTGGCAATGAGTTAA | 57.059 | 25.926 | 0.00 | 0.00 | 0.00 | 2.01 |
1537 | 1554 | 8.929827 | TTTGATTATGTGGCAATGAGTTAATG | 57.070 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
1538 | 1555 | 7.878547 | TGATTATGTGGCAATGAGTTAATGA | 57.121 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1539 | 1556 | 8.291191 | TGATTATGTGGCAATGAGTTAATGAA | 57.709 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1540 | 1557 | 8.407832 | TGATTATGTGGCAATGAGTTAATGAAG | 58.592 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
1541 | 1558 | 7.936496 | TTATGTGGCAATGAGTTAATGAAGA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1542 | 1559 | 5.885230 | TGTGGCAATGAGTTAATGAAGAG | 57.115 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
1543 | 1560 | 5.559770 | TGTGGCAATGAGTTAATGAAGAGA | 58.440 | 37.500 | 0.00 | 0.00 | 0.00 | 3.10 |
1544 | 1561 | 5.645067 | TGTGGCAATGAGTTAATGAAGAGAG | 59.355 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1545 | 1562 | 5.877012 | GTGGCAATGAGTTAATGAAGAGAGA | 59.123 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1546 | 1563 | 6.036953 | GTGGCAATGAGTTAATGAAGAGAGAG | 59.963 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
1547 | 1564 | 5.526846 | GGCAATGAGTTAATGAAGAGAGAGG | 59.473 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1548 | 1565 | 6.112058 | GCAATGAGTTAATGAAGAGAGAGGT | 58.888 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1549 | 1566 | 7.268586 | GCAATGAGTTAATGAAGAGAGAGGTA | 58.731 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
1550 | 1567 | 7.437862 | GCAATGAGTTAATGAAGAGAGAGGTAG | 59.562 | 40.741 | 0.00 | 0.00 | 0.00 | 3.18 |
1551 | 1568 | 8.474025 | CAATGAGTTAATGAAGAGAGAGGTAGT | 58.526 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1552 | 1569 | 8.602472 | ATGAGTTAATGAAGAGAGAGGTAGTT | 57.398 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1553 | 1570 | 9.702253 | ATGAGTTAATGAAGAGAGAGGTAGTTA | 57.298 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1554 | 1571 | 9.702253 | TGAGTTAATGAAGAGAGAGGTAGTTAT | 57.298 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1598 | 1615 | 4.811969 | ACATCACATGTTCCAATGCAAT | 57.188 | 36.364 | 0.00 | 0.00 | 41.63 | 3.56 |
1599 | 1616 | 5.918426 | ACATCACATGTTCCAATGCAATA | 57.082 | 34.783 | 0.00 | 0.00 | 41.63 | 1.90 |
1600 | 1617 | 6.474140 | ACATCACATGTTCCAATGCAATAT | 57.526 | 33.333 | 0.00 | 0.00 | 41.63 | 1.28 |
1601 | 1618 | 6.277605 | ACATCACATGTTCCAATGCAATATG | 58.722 | 36.000 | 0.00 | 0.00 | 41.63 | 1.78 |
1602 | 1619 | 6.097129 | ACATCACATGTTCCAATGCAATATGA | 59.903 | 34.615 | 0.61 | 0.00 | 41.63 | 2.15 |
1603 | 1620 | 6.139048 | TCACATGTTCCAATGCAATATGAG | 57.861 | 37.500 | 0.61 | 0.00 | 0.00 | 2.90 |
1604 | 1621 | 5.653330 | TCACATGTTCCAATGCAATATGAGT | 59.347 | 36.000 | 0.61 | 0.00 | 0.00 | 3.41 |
1605 | 1622 | 5.975344 | CACATGTTCCAATGCAATATGAGTC | 59.025 | 40.000 | 0.61 | 0.00 | 0.00 | 3.36 |
1606 | 1623 | 5.889853 | ACATGTTCCAATGCAATATGAGTCT | 59.110 | 36.000 | 0.61 | 0.00 | 0.00 | 3.24 |
1607 | 1624 | 7.012610 | CACATGTTCCAATGCAATATGAGTCTA | 59.987 | 37.037 | 0.61 | 0.00 | 0.00 | 2.59 |
1608 | 1625 | 7.722728 | ACATGTTCCAATGCAATATGAGTCTAT | 59.277 | 33.333 | 0.61 | 0.00 | 0.00 | 1.98 |
1609 | 1626 | 9.223099 | CATGTTCCAATGCAATATGAGTCTATA | 57.777 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
1610 | 1627 | 9.797642 | ATGTTCCAATGCAATATGAGTCTATAA | 57.202 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
1611 | 1628 | 9.056005 | TGTTCCAATGCAATATGAGTCTATAAC | 57.944 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1612 | 1629 | 8.507249 | GTTCCAATGCAATATGAGTCTATAACC | 58.493 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
1613 | 1630 | 7.977818 | TCCAATGCAATATGAGTCTATAACCT | 58.022 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
1614 | 1631 | 9.100197 | TCCAATGCAATATGAGTCTATAACCTA | 57.900 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
1615 | 1632 | 9.725019 | CCAATGCAATATGAGTCTATAACCTAA | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1642 | 1659 | 8.470040 | AAATGAATCTTTGCATGTTATCACAC | 57.530 | 30.769 | 0.00 | 0.00 | 35.03 | 3.82 |
1643 | 1660 | 6.822667 | TGAATCTTTGCATGTTATCACACT | 57.177 | 33.333 | 0.00 | 0.00 | 35.03 | 3.55 |
1644 | 1661 | 7.218228 | TGAATCTTTGCATGTTATCACACTT | 57.782 | 32.000 | 0.00 | 0.00 | 35.03 | 3.16 |
1645 | 1662 | 8.334263 | TGAATCTTTGCATGTTATCACACTTA | 57.666 | 30.769 | 0.00 | 0.00 | 35.03 | 2.24 |
1646 | 1663 | 8.791675 | TGAATCTTTGCATGTTATCACACTTAA | 58.208 | 29.630 | 0.00 | 0.00 | 35.03 | 1.85 |
1647 | 1664 | 9.282247 | GAATCTTTGCATGTTATCACACTTAAG | 57.718 | 33.333 | 0.00 | 0.00 | 35.03 | 1.85 |
1648 | 1665 | 7.744087 | TCTTTGCATGTTATCACACTTAAGT | 57.256 | 32.000 | 1.12 | 1.12 | 35.03 | 2.24 |
1649 | 1666 | 8.165239 | TCTTTGCATGTTATCACACTTAAGTT | 57.835 | 30.769 | 5.07 | 0.00 | 35.03 | 2.66 |
1650 | 1667 | 9.278978 | TCTTTGCATGTTATCACACTTAAGTTA | 57.721 | 29.630 | 5.07 | 0.00 | 35.03 | 2.24 |
1651 | 1668 | 9.329913 | CTTTGCATGTTATCACACTTAAGTTAC | 57.670 | 33.333 | 5.07 | 0.00 | 35.03 | 2.50 |
1652 | 1669 | 8.615878 | TTGCATGTTATCACACTTAAGTTACT | 57.384 | 30.769 | 5.07 | 0.00 | 35.03 | 2.24 |
1653 | 1670 | 9.713713 | TTGCATGTTATCACACTTAAGTTACTA | 57.286 | 29.630 | 5.07 | 0.00 | 35.03 | 1.82 |
1654 | 1671 | 9.146984 | TGCATGTTATCACACTTAAGTTACTAC | 57.853 | 33.333 | 5.07 | 0.94 | 35.03 | 2.73 |
1655 | 1672 | 8.601476 | GCATGTTATCACACTTAAGTTACTACC | 58.399 | 37.037 | 5.07 | 0.00 | 35.03 | 3.18 |
1656 | 1673 | 9.095065 | CATGTTATCACACTTAAGTTACTACCC | 57.905 | 37.037 | 5.07 | 0.00 | 35.03 | 3.69 |
1657 | 1674 | 8.192743 | TGTTATCACACTTAAGTTACTACCCA | 57.807 | 34.615 | 5.07 | 0.00 | 0.00 | 4.51 |
1658 | 1675 | 8.090214 | TGTTATCACACTTAAGTTACTACCCAC | 58.910 | 37.037 | 5.07 | 0.00 | 0.00 | 4.61 |
1659 | 1676 | 6.930068 | ATCACACTTAAGTTACTACCCACT | 57.070 | 37.500 | 5.07 | 0.00 | 0.00 | 4.00 |
1660 | 1677 | 9.532494 | TTATCACACTTAAGTTACTACCCACTA | 57.468 | 33.333 | 5.07 | 0.00 | 0.00 | 2.74 |
1661 | 1678 | 8.605325 | ATCACACTTAAGTTACTACCCACTAT | 57.395 | 34.615 | 5.07 | 0.00 | 0.00 | 2.12 |
1662 | 1679 | 7.833786 | TCACACTTAAGTTACTACCCACTATG | 58.166 | 38.462 | 5.07 | 0.00 | 0.00 | 2.23 |
1663 | 1680 | 7.670979 | TCACACTTAAGTTACTACCCACTATGA | 59.329 | 37.037 | 5.07 | 0.00 | 0.00 | 2.15 |
1664 | 1681 | 8.308931 | CACACTTAAGTTACTACCCACTATGAA | 58.691 | 37.037 | 5.07 | 0.00 | 0.00 | 2.57 |
1665 | 1682 | 8.529476 | ACACTTAAGTTACTACCCACTATGAAG | 58.471 | 37.037 | 5.07 | 0.00 | 0.00 | 3.02 |
1666 | 1683 | 8.746530 | CACTTAAGTTACTACCCACTATGAAGA | 58.253 | 37.037 | 5.07 | 0.00 | 0.00 | 2.87 |
1667 | 1684 | 9.490083 | ACTTAAGTTACTACCCACTATGAAGAT | 57.510 | 33.333 | 1.12 | 0.00 | 0.00 | 2.40 |
1724 | 1741 | 8.978472 | ACTAGTGTATGTTACTATCCATTGTGT | 58.022 | 33.333 | 0.00 | 0.00 | 30.83 | 3.72 |
1725 | 1742 | 9.464714 | CTAGTGTATGTTACTATCCATTGTGTC | 57.535 | 37.037 | 0.00 | 0.00 | 30.83 | 3.67 |
1726 | 1743 | 8.079211 | AGTGTATGTTACTATCCATTGTGTCT | 57.921 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
1727 | 1744 | 8.540388 | AGTGTATGTTACTATCCATTGTGTCTT | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1728 | 1745 | 8.604035 | GTGTATGTTACTATCCATTGTGTCTTG | 58.396 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1729 | 1746 | 8.318412 | TGTATGTTACTATCCATTGTGTCTTGT | 58.682 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1730 | 1747 | 7.849804 | ATGTTACTATCCATTGTGTCTTGTC | 57.150 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1731 | 1748 | 7.004555 | TGTTACTATCCATTGTGTCTTGTCT | 57.995 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1755 | 1772 | 0.598562 | TGCTTCTAGATCGATCGGGC | 59.401 | 55.000 | 19.33 | 18.11 | 0.00 | 6.13 |
1767 | 1784 | 1.740380 | CGATCGGGCAGTCACTTCATT | 60.740 | 52.381 | 7.38 | 0.00 | 0.00 | 2.57 |
1796 | 1813 | 9.561069 | TTGCTCTTCTCTTGTTAGTTTAGATTT | 57.439 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
1873 | 1890 | 8.863872 | ACAGTTTGCCTAGTTGTATAGAATTT | 57.136 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1903 | 1920 | 7.744068 | TCATTTTCTCCTAATAGATACCCCCAT | 59.256 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
1904 | 1921 | 7.569599 | TTTTCTCCTAATAGATACCCCCATC | 57.430 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1905 | 1922 | 5.222278 | TCTCCTAATAGATACCCCCATCC | 57.778 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1910 | 1927 | 3.839323 | ATAGATACCCCCATCCGTACA | 57.161 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1920 | 1937 | 6.433441 | ACCCCCATCCGTACAAAAATATAAA | 58.567 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1934 | 1951 | 8.884726 | ACAAAAATATAAAACGGTTTTGCAGTT | 58.115 | 25.926 | 24.93 | 15.66 | 40.95 | 3.16 |
2005 | 2025 | 2.503331 | TGAGAGAAATTTTGCGGCTGA | 58.497 | 42.857 | 0.00 | 0.00 | 0.00 | 4.26 |
2015 | 2039 | 2.102109 | TTGCGGCTGACGGGAAGTAA | 62.102 | 55.000 | 4.52 | 0.00 | 44.51 | 2.24 |
2016 | 2040 | 1.810030 | GCGGCTGACGGGAAGTAAG | 60.810 | 63.158 | 4.52 | 0.00 | 44.51 | 2.34 |
2017 | 2041 | 1.590147 | CGGCTGACGGGAAGTAAGT | 59.410 | 57.895 | 0.00 | 0.00 | 39.42 | 2.24 |
2018 | 2042 | 0.813184 | CGGCTGACGGGAAGTAAGTA | 59.187 | 55.000 | 0.00 | 0.00 | 39.42 | 2.24 |
2040 | 2064 | 8.608844 | AGTAAGAAAGTGGTTATTGAACTGAG | 57.391 | 34.615 | 0.00 | 0.00 | 35.74 | 3.35 |
2044 | 2068 | 4.974645 | AGTGGTTATTGAACTGAGGTGA | 57.025 | 40.909 | 0.00 | 0.00 | 35.74 | 4.02 |
2085 | 2109 | 2.159393 | CCATGCGATTGTGTTACCAAGG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2208 | 2364 | 0.883833 | GAAGGGGTCGACGACACTTA | 59.116 | 55.000 | 27.94 | 0.00 | 36.06 | 2.24 |
2209 | 2365 | 1.475682 | GAAGGGGTCGACGACACTTAT | 59.524 | 52.381 | 27.94 | 15.17 | 36.06 | 1.73 |
2210 | 2366 | 2.425143 | AGGGGTCGACGACACTTATA | 57.575 | 50.000 | 27.94 | 0.00 | 36.06 | 0.98 |
2211 | 2367 | 2.941480 | AGGGGTCGACGACACTTATAT | 58.059 | 47.619 | 27.94 | 8.18 | 36.06 | 0.86 |
2213 | 2369 | 4.660168 | AGGGGTCGACGACACTTATATAT | 58.340 | 43.478 | 27.94 | 4.88 | 36.06 | 0.86 |
2214 | 2370 | 5.809001 | AGGGGTCGACGACACTTATATATA | 58.191 | 41.667 | 27.94 | 0.00 | 36.06 | 0.86 |
2215 | 2371 | 5.879223 | AGGGGTCGACGACACTTATATATAG | 59.121 | 44.000 | 27.94 | 0.00 | 36.06 | 1.31 |
2216 | 2372 | 5.645497 | GGGGTCGACGACACTTATATATAGT | 59.355 | 44.000 | 27.94 | 0.00 | 36.06 | 2.12 |
2218 | 2374 | 7.334421 | GGGGTCGACGACACTTATATATAGTAA | 59.666 | 40.741 | 27.94 | 0.00 | 36.06 | 2.24 |
2219 | 2375 | 8.171840 | GGGTCGACGACACTTATATATAGTAAC | 58.828 | 40.741 | 27.77 | 5.49 | 32.50 | 2.50 |
2220 | 2376 | 8.712363 | GGTCGACGACACTTATATATAGTAACA | 58.288 | 37.037 | 27.77 | 0.00 | 33.68 | 2.41 |
2221 | 2377 | 9.522454 | GTCGACGACACTTATATATAGTAACAC | 57.478 | 37.037 | 22.66 | 0.00 | 32.09 | 3.32 |
2222 | 2378 | 8.427774 | TCGACGACACTTATATATAGTAACACG | 58.572 | 37.037 | 0.00 | 0.00 | 0.00 | 4.49 |
2223 | 2379 | 8.217115 | CGACGACACTTATATATAGTAACACGT | 58.783 | 37.037 | 0.00 | 0.00 | 0.00 | 4.49 |
2236 | 2392 | 5.240713 | AGTAACACGTAAGATTACCTCGG | 57.759 | 43.478 | 0.00 | 0.00 | 40.70 | 4.63 |
2239 | 2395 | 4.303086 | ACACGTAAGATTACCTCGGATG | 57.697 | 45.455 | 0.00 | 0.00 | 43.62 | 3.51 |
2240 | 2396 | 3.949754 | ACACGTAAGATTACCTCGGATGA | 59.050 | 43.478 | 0.00 | 0.00 | 43.62 | 2.92 |
2241 | 2397 | 4.400251 | ACACGTAAGATTACCTCGGATGAA | 59.600 | 41.667 | 0.00 | 0.00 | 43.62 | 2.57 |
2242 | 2398 | 4.976731 | CACGTAAGATTACCTCGGATGAAG | 59.023 | 45.833 | 0.00 | 0.00 | 43.62 | 3.02 |
2243 | 2399 | 4.885907 | ACGTAAGATTACCTCGGATGAAGA | 59.114 | 41.667 | 0.00 | 0.00 | 43.62 | 2.87 |
2244 | 2400 | 5.359009 | ACGTAAGATTACCTCGGATGAAGAA | 59.641 | 40.000 | 0.00 | 0.00 | 43.62 | 2.52 |
2245 | 2401 | 6.040616 | ACGTAAGATTACCTCGGATGAAGAAT | 59.959 | 38.462 | 0.00 | 0.00 | 43.62 | 2.40 |
2246 | 2402 | 7.230108 | ACGTAAGATTACCTCGGATGAAGAATA | 59.770 | 37.037 | 0.00 | 0.00 | 43.62 | 1.75 |
2247 | 2403 | 8.080417 | CGTAAGATTACCTCGGATGAAGAATAA | 58.920 | 37.037 | 0.00 | 0.00 | 43.02 | 1.40 |
2248 | 2404 | 9.194271 | GTAAGATTACCTCGGATGAAGAATAAC | 57.806 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
2249 | 2405 | 7.361457 | AGATTACCTCGGATGAAGAATAACA | 57.639 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2250 | 2406 | 7.210873 | AGATTACCTCGGATGAAGAATAACAC | 58.789 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
2251 | 2407 | 6.540438 | TTACCTCGGATGAAGAATAACACT | 57.460 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
2253 | 2409 | 6.540438 | ACCTCGGATGAAGAATAACACTTA | 57.460 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2254 | 2410 | 7.125792 | ACCTCGGATGAAGAATAACACTTAT | 57.874 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2265 | 2421 | 6.124088 | GAATAACACTTATTCTGCACCCTG | 57.876 | 41.667 | 7.27 | 0.00 | 45.06 | 4.45 |
2266 | 2422 | 3.788227 | AACACTTATTCTGCACCCTGA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
2267 | 2423 | 3.788227 | ACACTTATTCTGCACCCTGAA | 57.212 | 42.857 | 0.00 | 0.00 | 34.12 | 3.02 |
2268 | 2424 | 4.307032 | ACACTTATTCTGCACCCTGAAT | 57.693 | 40.909 | 4.54 | 4.54 | 41.00 | 2.57 |
2735 | 2891 | 5.236911 | GCATTGTCATTTGTCACCAACAATT | 59.763 | 36.000 | 0.00 | 0.00 | 46.94 | 2.32 |
2751 | 2907 | 9.376075 | CACCAACAATTATGCCATATTTGTTTA | 57.624 | 29.630 | 24.47 | 0.00 | 42.20 | 2.01 |
3141 | 3315 | 4.219288 | GCAAAATGAACTCTCACAGGGAAT | 59.781 | 41.667 | 0.00 | 0.00 | 33.30 | 3.01 |
3211 | 3385 | 4.973168 | AGCAGTCAGACAATTTCCTTACA | 58.027 | 39.130 | 2.66 | 0.00 | 0.00 | 2.41 |
3321 | 3495 | 0.321653 | GGTGGCAGTCCTAAGTGTGG | 60.322 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3370 | 3544 | 5.295540 | GGCTTCTTACAATGATCTCAACTCC | 59.704 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3373 | 3547 | 6.280855 | TCTTACAATGATCTCAACTCCGAA | 57.719 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
3492 | 3669 | 4.446889 | GGAGCTCCCTTCATTCCAATATGT | 60.447 | 45.833 | 23.19 | 0.00 | 0.00 | 2.29 |
3526 | 3703 | 1.102978 | GCACCAACTTGTTGTGTCCT | 58.897 | 50.000 | 11.82 | 0.00 | 0.00 | 3.85 |
3527 | 3704 | 1.476488 | GCACCAACTTGTTGTGTCCTT | 59.524 | 47.619 | 11.82 | 0.00 | 0.00 | 3.36 |
3695 | 3892 | 5.998454 | GACTCAGTGTCATTTCCATATGG | 57.002 | 43.478 | 16.25 | 16.25 | 44.73 | 2.74 |
3795 | 3993 | 7.166167 | CCTACAAATCACCTACTGGTAAGTTT | 58.834 | 38.462 | 0.00 | 0.00 | 46.60 | 2.66 |
3803 | 4001 | 7.228590 | TCACCTACTGGTAAGTTTGCTTAATT | 58.771 | 34.615 | 0.00 | 0.00 | 46.60 | 1.40 |
3947 | 4471 | 9.508642 | TTCAATGTACCAGTGTATGATAAAACA | 57.491 | 29.630 | 0.00 | 0.00 | 31.07 | 2.83 |
3973 | 4500 | 4.220602 | ACTTCTTGTTGGTTTTGCAGACTT | 59.779 | 37.500 | 2.84 | 0.00 | 0.00 | 3.01 |
4058 | 4585 | 1.086067 | ATCCTTGCGCGACAGATGTG | 61.086 | 55.000 | 12.10 | 0.00 | 0.00 | 3.21 |
4110 | 4637 | 7.445121 | AGATTCAACACACTCAGAGTATCAAA | 58.555 | 34.615 | 1.67 | 0.00 | 37.82 | 2.69 |
4118 | 4645 | 6.205464 | CACACTCAGAGTATCAAACCAACAAT | 59.795 | 38.462 | 1.67 | 0.00 | 37.82 | 2.71 |
4137 | 4664 | 6.207691 | ACAATGGTCCACTTAATGCATTAC | 57.792 | 37.500 | 18.70 | 8.80 | 0.00 | 1.89 |
4360 | 4887 | 8.142994 | ACGATGGCAAATATTAAACTCTACAG | 57.857 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
4365 | 4892 | 8.405531 | TGGCAAATATTAAACTCTACAGCAATC | 58.594 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
4380 | 4907 | 4.768448 | ACAGCAATCATCATTTTCAGGACA | 59.232 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
4410 | 4938 | 3.439293 | GACATGACGACGATGATGACTT | 58.561 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
4451 | 4979 | 3.321111 | TCTCCCGATTTTATCCCGAGAAG | 59.679 | 47.826 | 0.00 | 0.00 | 31.04 | 2.85 |
4468 | 4996 | 5.220912 | CCGAGAAGCATTATTCATGAAGCAA | 60.221 | 40.000 | 14.54 | 10.57 | 34.31 | 3.91 |
4739 | 5274 | 5.947228 | TGGAACAATCACAAGACAAGATC | 57.053 | 39.130 | 0.00 | 0.00 | 31.92 | 2.75 |
4743 | 5278 | 6.016777 | GGAACAATCACAAGACAAGATCTGTT | 60.017 | 38.462 | 0.00 | 0.00 | 38.84 | 3.16 |
4747 | 5282 | 6.949352 | ATCACAAGACAAGATCTGTTGTTT | 57.051 | 33.333 | 0.00 | 0.00 | 40.83 | 2.83 |
4784 | 5319 | 6.000219 | AGTTACATGAGACATGCAAACTTCT | 59.000 | 36.000 | 18.51 | 0.00 | 29.67 | 2.85 |
4787 | 5322 | 5.766222 | ACATGAGACATGCAAACTTCTTTC | 58.234 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
4904 | 5449 | 2.762535 | ACTGTATGTTCAAGGTCCCG | 57.237 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4971 | 5516 | 4.191033 | CTCACTGAGCTCTTGACAATCT | 57.809 | 45.455 | 16.19 | 0.00 | 0.00 | 2.40 |
4972 | 5517 | 5.321959 | CTCACTGAGCTCTTGACAATCTA | 57.678 | 43.478 | 16.19 | 0.00 | 0.00 | 1.98 |
5013 | 5558 | 6.816140 | TGACTTGAAACAAATGTTCTTTTCCC | 59.184 | 34.615 | 0.00 | 0.00 | 37.25 | 3.97 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
149 | 150 | 9.890629 | TGTATCTAGAAAGTGTTAAAGATGCAT | 57.109 | 29.630 | 0.00 | 0.00 | 33.19 | 3.96 |
150 | 151 | 9.890629 | ATGTATCTAGAAAGTGTTAAAGATGCA | 57.109 | 29.630 | 0.00 | 0.00 | 39.34 | 3.96 |
312 | 313 | 7.544566 | TGTGTACGGAAAAAGCAAACATAAAAA | 59.455 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
313 | 314 | 7.033791 | TGTGTACGGAAAAAGCAAACATAAAA | 58.966 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
314 | 315 | 6.561614 | TGTGTACGGAAAAAGCAAACATAAA | 58.438 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
315 | 316 | 6.132791 | TGTGTACGGAAAAAGCAAACATAA | 57.867 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
316 | 317 | 5.752892 | TGTGTACGGAAAAAGCAAACATA | 57.247 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
317 | 318 | 4.640789 | TGTGTACGGAAAAAGCAAACAT | 57.359 | 36.364 | 0.00 | 0.00 | 0.00 | 2.71 |
318 | 319 | 4.640789 | ATGTGTACGGAAAAAGCAAACA | 57.359 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
319 | 320 | 5.754778 | ACTATGTGTACGGAAAAAGCAAAC | 58.245 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
320 | 321 | 6.890558 | GTACTATGTGTACGGAAAAAGCAAA | 58.109 | 36.000 | 0.00 | 0.00 | 41.58 | 3.68 |
321 | 322 | 6.470557 | GTACTATGTGTACGGAAAAAGCAA | 57.529 | 37.500 | 0.00 | 0.00 | 41.58 | 3.91 |
425 | 426 | 9.594478 | CCCACTGTTTTCTTTACTTTTGTTTAT | 57.406 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
426 | 427 | 8.804204 | TCCCACTGTTTTCTTTACTTTTGTTTA | 58.196 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
427 | 428 | 7.672240 | TCCCACTGTTTTCTTTACTTTTGTTT | 58.328 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
456 | 457 | 2.919494 | CGGCCCAAAAGCGCTCTTT | 61.919 | 57.895 | 12.06 | 11.03 | 43.94 | 2.52 |
489 | 490 | 3.452786 | CTCGGCCTCCTGAAGCGA | 61.453 | 66.667 | 0.00 | 0.00 | 0.00 | 4.93 |
512 | 513 | 2.820479 | TTTACGGGCCCGCGAATG | 60.820 | 61.111 | 43.58 | 17.94 | 44.19 | 2.67 |
513 | 514 | 2.820922 | GTTTACGGGCCCGCGAAT | 60.821 | 61.111 | 43.58 | 26.90 | 44.19 | 3.34 |
520 | 521 | 2.045634 | GGAGTGGGTTTACGGGCC | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
521 | 522 | 0.323087 | AATGGAGTGGGTTTACGGGC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
524 | 525 | 2.268298 | CTCGAATGGAGTGGGTTTACG | 58.732 | 52.381 | 0.00 | 0.00 | 38.02 | 3.18 |
551 | 552 | 9.448438 | AAAGGCAGAATGTTTTCTTTACTTTTT | 57.552 | 25.926 | 0.00 | 0.00 | 40.28 | 1.94 |
552 | 553 | 9.448438 | AAAAGGCAGAATGTTTTCTTTACTTTT | 57.552 | 25.926 | 11.79 | 11.79 | 40.28 | 2.27 |
553 | 554 | 8.882736 | CAAAAGGCAGAATGTTTTCTTTACTTT | 58.117 | 29.630 | 0.00 | 0.00 | 40.28 | 2.66 |
554 | 555 | 8.040727 | ACAAAAGGCAGAATGTTTTCTTTACTT | 58.959 | 29.630 | 0.00 | 0.00 | 40.28 | 2.24 |
555 | 556 | 7.555965 | ACAAAAGGCAGAATGTTTTCTTTACT | 58.444 | 30.769 | 0.00 | 0.00 | 40.28 | 2.24 |
556 | 557 | 7.770801 | ACAAAAGGCAGAATGTTTTCTTTAC | 57.229 | 32.000 | 0.00 | 0.00 | 40.28 | 2.01 |
557 | 558 | 7.494298 | GGAACAAAAGGCAGAATGTTTTCTTTA | 59.506 | 33.333 | 0.00 | 0.00 | 40.28 | 1.85 |
558 | 559 | 6.316140 | GGAACAAAAGGCAGAATGTTTTCTTT | 59.684 | 34.615 | 0.00 | 0.00 | 40.28 | 2.52 |
559 | 560 | 5.817296 | GGAACAAAAGGCAGAATGTTTTCTT | 59.183 | 36.000 | 0.00 | 0.00 | 40.28 | 2.52 |
560 | 561 | 5.104982 | TGGAACAAAAGGCAGAATGTTTTCT | 60.105 | 36.000 | 0.00 | 0.00 | 37.96 | 2.52 |
561 | 562 | 5.115480 | TGGAACAAAAGGCAGAATGTTTTC | 58.885 | 37.500 | 0.00 | 0.00 | 36.22 | 2.29 |
562 | 563 | 5.096443 | TGGAACAAAAGGCAGAATGTTTT | 57.904 | 34.783 | 0.00 | 0.00 | 36.22 | 2.43 |
579 | 580 | 1.324736 | CGAGAAATGTAGCGCTGGAAC | 59.675 | 52.381 | 22.90 | 11.48 | 0.00 | 3.62 |
714 | 715 | 0.932211 | GTGTAGAGGGTAGGGAGGGA | 59.068 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
723 | 724 | 2.352032 | GGCGCAGAGTGTAGAGGGT | 61.352 | 63.158 | 10.83 | 0.00 | 0.00 | 4.34 |
779 | 782 | 2.203640 | TGCTCACCGTGGAGAGGT | 60.204 | 61.111 | 14.03 | 0.00 | 43.97 | 3.85 |
817 | 820 | 4.156922 | CGAATCTAATCTAGGGAGCGACAT | 59.843 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
848 | 856 | 7.599630 | ATCCAATCAAAACCAATTCAATTCG | 57.400 | 32.000 | 0.00 | 0.00 | 0.00 | 3.34 |
866 | 874 | 2.114670 | CACTCCGGCGCAATCCAAT | 61.115 | 57.895 | 10.83 | 0.00 | 0.00 | 3.16 |
878 | 886 | 2.621338 | TCTGCAGCTAAATTCACTCCG | 58.379 | 47.619 | 9.47 | 0.00 | 0.00 | 4.63 |
895 | 903 | 1.857217 | CAGCGAGACGAATCCAATCTG | 59.143 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
906 | 914 | 0.302890 | GGAAATGCATCAGCGAGACG | 59.697 | 55.000 | 0.00 | 0.00 | 46.23 | 4.18 |
909 | 917 | 1.598132 | CAGAGGAAATGCATCAGCGAG | 59.402 | 52.381 | 0.00 | 0.00 | 46.23 | 5.03 |
928 | 945 | 4.262894 | CCCTACCAAACTAAGAACAGAGCA | 60.263 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
929 | 946 | 4.254492 | CCCTACCAAACTAAGAACAGAGC | 58.746 | 47.826 | 0.00 | 0.00 | 0.00 | 4.09 |
997 | 1014 | 0.462759 | GCGTCCTTCCCTTCCATCTG | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1027 | 1044 | 2.818714 | CTTCAGCAGCTCCGGCAG | 60.819 | 66.667 | 0.00 | 0.00 | 41.70 | 4.85 |
1152 | 1169 | 4.006357 | GTACCGCCGGTCCCAACA | 62.006 | 66.667 | 14.44 | 0.00 | 37.09 | 3.33 |
1463 | 1480 | 3.510360 | GCTGAAGTTACTCCCACTGTCTA | 59.490 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
1464 | 1481 | 2.300437 | GCTGAAGTTACTCCCACTGTCT | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1465 | 1482 | 2.037251 | TGCTGAAGTTACTCCCACTGTC | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1466 | 1483 | 2.037772 | CTGCTGAAGTTACTCCCACTGT | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1467 | 1484 | 2.037772 | ACTGCTGAAGTTACTCCCACTG | 59.962 | 50.000 | 0.00 | 0.00 | 34.57 | 3.66 |
1468 | 1485 | 2.330216 | ACTGCTGAAGTTACTCCCACT | 58.670 | 47.619 | 0.00 | 0.00 | 34.57 | 4.00 |
1469 | 1486 | 2.841442 | ACTGCTGAAGTTACTCCCAC | 57.159 | 50.000 | 0.00 | 0.00 | 34.57 | 4.61 |
1470 | 1487 | 3.644265 | TGTTACTGCTGAAGTTACTCCCA | 59.356 | 43.478 | 6.50 | 0.00 | 38.87 | 4.37 |
1471 | 1488 | 4.267349 | TGTTACTGCTGAAGTTACTCCC | 57.733 | 45.455 | 6.50 | 0.00 | 38.87 | 4.30 |
1472 | 1489 | 4.563184 | CGATGTTACTGCTGAAGTTACTCC | 59.437 | 45.833 | 6.50 | 0.00 | 38.87 | 3.85 |
1473 | 1490 | 5.399858 | TCGATGTTACTGCTGAAGTTACTC | 58.600 | 41.667 | 6.50 | 1.79 | 38.87 | 2.59 |
1474 | 1491 | 5.047943 | ACTCGATGTTACTGCTGAAGTTACT | 60.048 | 40.000 | 6.50 | 0.00 | 38.87 | 2.24 |
1475 | 1492 | 5.162075 | ACTCGATGTTACTGCTGAAGTTAC | 58.838 | 41.667 | 0.00 | 0.00 | 40.56 | 2.50 |
1476 | 1493 | 5.386958 | ACTCGATGTTACTGCTGAAGTTA | 57.613 | 39.130 | 0.00 | 0.00 | 40.56 | 2.24 |
1477 | 1494 | 4.238514 | GACTCGATGTTACTGCTGAAGTT | 58.761 | 43.478 | 0.00 | 0.00 | 40.56 | 2.66 |
1478 | 1495 | 3.367498 | GGACTCGATGTTACTGCTGAAGT | 60.367 | 47.826 | 0.00 | 0.00 | 43.40 | 3.01 |
1479 | 1496 | 3.182967 | GGACTCGATGTTACTGCTGAAG | 58.817 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1480 | 1497 | 2.560981 | TGGACTCGATGTTACTGCTGAA | 59.439 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
1481 | 1498 | 2.167662 | TGGACTCGATGTTACTGCTGA | 58.832 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1482 | 1499 | 2.654749 | TGGACTCGATGTTACTGCTG | 57.345 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1483 | 1500 | 2.563179 | AGTTGGACTCGATGTTACTGCT | 59.437 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
1484 | 1501 | 2.960819 | AGTTGGACTCGATGTTACTGC | 58.039 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
1485 | 1502 | 5.924254 | TGTTAAGTTGGACTCGATGTTACTG | 59.076 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1486 | 1503 | 6.092955 | TGTTAAGTTGGACTCGATGTTACT | 57.907 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1487 | 1504 | 6.774354 | TTGTTAAGTTGGACTCGATGTTAC | 57.226 | 37.500 | 0.00 | 0.00 | 0.00 | 2.50 |
1488 | 1505 | 7.972832 | ATTTGTTAAGTTGGACTCGATGTTA | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1489 | 1506 | 6.877611 | ATTTGTTAAGTTGGACTCGATGTT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
1490 | 1507 | 6.877611 | AATTTGTTAAGTTGGACTCGATGT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
1491 | 1508 | 7.359595 | TCAAATTTGTTAAGTTGGACTCGATG | 58.640 | 34.615 | 17.47 | 0.00 | 39.23 | 3.84 |
1492 | 1509 | 7.504924 | TCAAATTTGTTAAGTTGGACTCGAT | 57.495 | 32.000 | 17.47 | 0.00 | 39.23 | 3.59 |
1493 | 1510 | 6.928979 | TCAAATTTGTTAAGTTGGACTCGA | 57.071 | 33.333 | 17.47 | 0.00 | 39.23 | 4.04 |
1494 | 1511 | 9.840427 | ATAATCAAATTTGTTAAGTTGGACTCG | 57.160 | 29.630 | 17.47 | 0.00 | 39.23 | 4.18 |
1498 | 1515 | 9.703892 | CCACATAATCAAATTTGTTAAGTTGGA | 57.296 | 29.630 | 17.47 | 0.00 | 39.23 | 3.53 |
1499 | 1516 | 8.442384 | GCCACATAATCAAATTTGTTAAGTTGG | 58.558 | 33.333 | 17.47 | 17.22 | 39.23 | 3.77 |
1500 | 1517 | 8.986847 | TGCCACATAATCAAATTTGTTAAGTTG | 58.013 | 29.630 | 17.47 | 13.50 | 39.90 | 3.16 |
1501 | 1518 | 9.553064 | TTGCCACATAATCAAATTTGTTAAGTT | 57.447 | 25.926 | 17.47 | 8.74 | 0.00 | 2.66 |
1502 | 1519 | 9.723601 | ATTGCCACATAATCAAATTTGTTAAGT | 57.276 | 25.926 | 17.47 | 14.02 | 0.00 | 2.24 |
1503 | 1520 | 9.976255 | CATTGCCACATAATCAAATTTGTTAAG | 57.024 | 29.630 | 17.47 | 13.51 | 0.00 | 1.85 |
1504 | 1521 | 9.716531 | TCATTGCCACATAATCAAATTTGTTAA | 57.283 | 25.926 | 17.47 | 5.03 | 0.00 | 2.01 |
1505 | 1522 | 9.368674 | CTCATTGCCACATAATCAAATTTGTTA | 57.631 | 29.630 | 17.47 | 14.51 | 0.00 | 2.41 |
1506 | 1523 | 7.879160 | ACTCATTGCCACATAATCAAATTTGTT | 59.121 | 29.630 | 17.47 | 13.00 | 0.00 | 2.83 |
1507 | 1524 | 7.388437 | ACTCATTGCCACATAATCAAATTTGT | 58.612 | 30.769 | 17.47 | 2.40 | 0.00 | 2.83 |
1508 | 1525 | 7.837202 | ACTCATTGCCACATAATCAAATTTG | 57.163 | 32.000 | 12.15 | 12.15 | 0.00 | 2.32 |
1509 | 1526 | 9.941325 | TTAACTCATTGCCACATAATCAAATTT | 57.059 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
1511 | 1528 | 9.537192 | CATTAACTCATTGCCACATAATCAAAT | 57.463 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1512 | 1529 | 8.747471 | TCATTAACTCATTGCCACATAATCAAA | 58.253 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
1513 | 1530 | 8.291191 | TCATTAACTCATTGCCACATAATCAA | 57.709 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1514 | 1531 | 7.878547 | TCATTAACTCATTGCCACATAATCA | 57.121 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1515 | 1532 | 8.623903 | TCTTCATTAACTCATTGCCACATAATC | 58.376 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
1516 | 1533 | 8.523915 | TCTTCATTAACTCATTGCCACATAAT | 57.476 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
1517 | 1534 | 7.828717 | TCTCTTCATTAACTCATTGCCACATAA | 59.171 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
1518 | 1535 | 7.337938 | TCTCTTCATTAACTCATTGCCACATA | 58.662 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1519 | 1536 | 6.182627 | TCTCTTCATTAACTCATTGCCACAT | 58.817 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1520 | 1537 | 5.559770 | TCTCTTCATTAACTCATTGCCACA | 58.440 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
1521 | 1538 | 5.877012 | TCTCTCTTCATTAACTCATTGCCAC | 59.123 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1522 | 1539 | 6.053632 | TCTCTCTTCATTAACTCATTGCCA | 57.946 | 37.500 | 0.00 | 0.00 | 0.00 | 4.92 |
1523 | 1540 | 5.526846 | CCTCTCTCTTCATTAACTCATTGCC | 59.473 | 44.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1524 | 1541 | 6.112058 | ACCTCTCTCTTCATTAACTCATTGC | 58.888 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
1525 | 1542 | 8.474025 | ACTACCTCTCTCTTCATTAACTCATTG | 58.526 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
1526 | 1543 | 8.602472 | ACTACCTCTCTCTTCATTAACTCATT | 57.398 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1527 | 1544 | 8.602472 | AACTACCTCTCTCTTCATTAACTCAT | 57.398 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
1528 | 1545 | 9.702253 | ATAACTACCTCTCTCTTCATTAACTCA | 57.298 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1578 | 1595 | 6.508777 | TCATATTGCATTGGAACATGTGATG | 58.491 | 36.000 | 8.71 | 3.38 | 39.30 | 3.07 |
1579 | 1596 | 6.322969 | ACTCATATTGCATTGGAACATGTGAT | 59.677 | 34.615 | 15.21 | 1.38 | 39.30 | 3.06 |
1580 | 1597 | 5.653330 | ACTCATATTGCATTGGAACATGTGA | 59.347 | 36.000 | 15.21 | 5.01 | 39.30 | 3.58 |
1581 | 1598 | 5.898174 | ACTCATATTGCATTGGAACATGTG | 58.102 | 37.500 | 8.71 | 8.83 | 39.30 | 3.21 |
1582 | 1599 | 5.889853 | AGACTCATATTGCATTGGAACATGT | 59.110 | 36.000 | 8.71 | 0.00 | 39.30 | 3.21 |
1583 | 1600 | 6.387041 | AGACTCATATTGCATTGGAACATG | 57.613 | 37.500 | 3.03 | 3.03 | 39.30 | 3.21 |
1584 | 1601 | 9.797642 | TTATAGACTCATATTGCATTGGAACAT | 57.202 | 29.630 | 0.00 | 0.00 | 39.30 | 2.71 |
1585 | 1602 | 9.056005 | GTTATAGACTCATATTGCATTGGAACA | 57.944 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1586 | 1603 | 8.507249 | GGTTATAGACTCATATTGCATTGGAAC | 58.493 | 37.037 | 0.00 | 0.00 | 0.00 | 3.62 |
1587 | 1604 | 8.439971 | AGGTTATAGACTCATATTGCATTGGAA | 58.560 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
1588 | 1605 | 7.977818 | AGGTTATAGACTCATATTGCATTGGA | 58.022 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
1589 | 1606 | 9.725019 | TTAGGTTATAGACTCATATTGCATTGG | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1616 | 1633 | 9.571810 | GTGTGATAACATGCAAAGATTCATTTA | 57.428 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1617 | 1634 | 8.308931 | AGTGTGATAACATGCAAAGATTCATTT | 58.691 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1618 | 1635 | 7.833786 | AGTGTGATAACATGCAAAGATTCATT | 58.166 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1619 | 1636 | 7.400599 | AGTGTGATAACATGCAAAGATTCAT | 57.599 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1620 | 1637 | 6.822667 | AGTGTGATAACATGCAAAGATTCA | 57.177 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1621 | 1638 | 9.282247 | CTTAAGTGTGATAACATGCAAAGATTC | 57.718 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1622 | 1639 | 8.796475 | ACTTAAGTGTGATAACATGCAAAGATT | 58.204 | 29.630 | 7.48 | 0.00 | 0.00 | 2.40 |
1623 | 1640 | 8.340618 | ACTTAAGTGTGATAACATGCAAAGAT | 57.659 | 30.769 | 7.48 | 0.00 | 0.00 | 2.40 |
1624 | 1641 | 7.744087 | ACTTAAGTGTGATAACATGCAAAGA | 57.256 | 32.000 | 7.48 | 0.00 | 0.00 | 2.52 |
1625 | 1642 | 9.329913 | GTAACTTAAGTGTGATAACATGCAAAG | 57.670 | 33.333 | 9.34 | 0.00 | 0.00 | 2.77 |
1626 | 1643 | 9.062524 | AGTAACTTAAGTGTGATAACATGCAAA | 57.937 | 29.630 | 9.34 | 0.00 | 0.00 | 3.68 |
1627 | 1644 | 8.615878 | AGTAACTTAAGTGTGATAACATGCAA | 57.384 | 30.769 | 9.34 | 0.00 | 0.00 | 4.08 |
1628 | 1645 | 9.146984 | GTAGTAACTTAAGTGTGATAACATGCA | 57.853 | 33.333 | 9.34 | 0.00 | 0.00 | 3.96 |
1629 | 1646 | 8.601476 | GGTAGTAACTTAAGTGTGATAACATGC | 58.399 | 37.037 | 9.34 | 0.00 | 0.00 | 4.06 |
1630 | 1647 | 9.095065 | GGGTAGTAACTTAAGTGTGATAACATG | 57.905 | 37.037 | 9.34 | 0.00 | 0.00 | 3.21 |
1631 | 1648 | 8.818860 | TGGGTAGTAACTTAAGTGTGATAACAT | 58.181 | 33.333 | 9.34 | 0.00 | 0.00 | 2.71 |
1632 | 1649 | 8.090214 | GTGGGTAGTAACTTAAGTGTGATAACA | 58.910 | 37.037 | 9.34 | 2.02 | 0.00 | 2.41 |
1633 | 1650 | 8.309656 | AGTGGGTAGTAACTTAAGTGTGATAAC | 58.690 | 37.037 | 9.34 | 3.21 | 0.00 | 1.89 |
1634 | 1651 | 8.426569 | AGTGGGTAGTAACTTAAGTGTGATAA | 57.573 | 34.615 | 9.34 | 0.00 | 0.00 | 1.75 |
1635 | 1652 | 9.705103 | ATAGTGGGTAGTAACTTAAGTGTGATA | 57.295 | 33.333 | 9.34 | 0.00 | 0.00 | 2.15 |
1636 | 1653 | 6.930068 | AGTGGGTAGTAACTTAAGTGTGAT | 57.070 | 37.500 | 9.34 | 0.00 | 0.00 | 3.06 |
1637 | 1654 | 7.670979 | TCATAGTGGGTAGTAACTTAAGTGTGA | 59.329 | 37.037 | 9.34 | 0.00 | 0.00 | 3.58 |
1638 | 1655 | 7.833786 | TCATAGTGGGTAGTAACTTAAGTGTG | 58.166 | 38.462 | 9.34 | 0.00 | 0.00 | 3.82 |
1639 | 1656 | 8.426569 | TTCATAGTGGGTAGTAACTTAAGTGT | 57.573 | 34.615 | 9.34 | 2.40 | 0.00 | 3.55 |
1640 | 1657 | 8.746530 | TCTTCATAGTGGGTAGTAACTTAAGTG | 58.253 | 37.037 | 9.34 | 0.00 | 0.00 | 3.16 |
1641 | 1658 | 8.890410 | TCTTCATAGTGGGTAGTAACTTAAGT | 57.110 | 34.615 | 1.12 | 1.12 | 0.00 | 2.24 |
1698 | 1715 | 8.978472 | ACACAATGGATAGTAACATACACTAGT | 58.022 | 33.333 | 0.00 | 0.00 | 32.24 | 2.57 |
1699 | 1716 | 9.464714 | GACACAATGGATAGTAACATACACTAG | 57.535 | 37.037 | 0.00 | 0.00 | 32.24 | 2.57 |
1700 | 1717 | 9.197306 | AGACACAATGGATAGTAACATACACTA | 57.803 | 33.333 | 0.00 | 0.00 | 33.22 | 2.74 |
1701 | 1718 | 8.079211 | AGACACAATGGATAGTAACATACACT | 57.921 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
1702 | 1719 | 8.604035 | CAAGACACAATGGATAGTAACATACAC | 58.396 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1703 | 1720 | 8.318412 | ACAAGACACAATGGATAGTAACATACA | 58.682 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1704 | 1721 | 8.718102 | ACAAGACACAATGGATAGTAACATAC | 57.282 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
1705 | 1722 | 8.758829 | AGACAAGACACAATGGATAGTAACATA | 58.241 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1706 | 1723 | 7.624549 | AGACAAGACACAATGGATAGTAACAT | 58.375 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
1707 | 1724 | 7.004555 | AGACAAGACACAATGGATAGTAACA | 57.995 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1708 | 1725 | 7.907214 | AAGACAAGACACAATGGATAGTAAC | 57.093 | 36.000 | 0.00 | 0.00 | 0.00 | 2.50 |
1709 | 1726 | 8.590204 | TGTAAGACAAGACACAATGGATAGTAA | 58.410 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1710 | 1727 | 8.129496 | TGTAAGACAAGACACAATGGATAGTA | 57.871 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1711 | 1728 | 7.004555 | TGTAAGACAAGACACAATGGATAGT | 57.995 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
1712 | 1729 | 7.466455 | GCATGTAAGACAAGACACAATGGATAG | 60.466 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
1713 | 1730 | 6.316140 | GCATGTAAGACAAGACACAATGGATA | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
1714 | 1731 | 5.124457 | GCATGTAAGACAAGACACAATGGAT | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1715 | 1732 | 4.455533 | GCATGTAAGACAAGACACAATGGA | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1716 | 1733 | 4.456911 | AGCATGTAAGACAAGACACAATGG | 59.543 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1717 | 1734 | 5.618056 | AGCATGTAAGACAAGACACAATG | 57.382 | 39.130 | 0.00 | 0.00 | 0.00 | 2.82 |
1718 | 1735 | 6.000219 | AGAAGCATGTAAGACAAGACACAAT | 59.000 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1719 | 1736 | 5.368145 | AGAAGCATGTAAGACAAGACACAA | 58.632 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
1720 | 1737 | 4.960938 | AGAAGCATGTAAGACAAGACACA | 58.039 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
1721 | 1738 | 6.390721 | TCTAGAAGCATGTAAGACAAGACAC | 58.609 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1722 | 1739 | 6.590234 | TCTAGAAGCATGTAAGACAAGACA | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1723 | 1740 | 6.416455 | CGATCTAGAAGCATGTAAGACAAGAC | 59.584 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
1724 | 1741 | 6.318900 | TCGATCTAGAAGCATGTAAGACAAGA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
1725 | 1742 | 6.499172 | TCGATCTAGAAGCATGTAAGACAAG | 58.501 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1726 | 1743 | 6.451064 | TCGATCTAGAAGCATGTAAGACAA | 57.549 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
1727 | 1744 | 6.566753 | CGATCGATCTAGAAGCATGTAAGACA | 60.567 | 42.308 | 22.43 | 0.00 | 0.00 | 3.41 |
1728 | 1745 | 5.792962 | CGATCGATCTAGAAGCATGTAAGAC | 59.207 | 44.000 | 22.43 | 0.00 | 0.00 | 3.01 |
1729 | 1746 | 5.106515 | CCGATCGATCTAGAAGCATGTAAGA | 60.107 | 44.000 | 22.43 | 0.00 | 0.00 | 2.10 |
1730 | 1747 | 5.092105 | CCGATCGATCTAGAAGCATGTAAG | 58.908 | 45.833 | 22.43 | 2.42 | 0.00 | 2.34 |
1731 | 1748 | 4.082733 | CCCGATCGATCTAGAAGCATGTAA | 60.083 | 45.833 | 22.43 | 0.00 | 0.00 | 2.41 |
1755 | 1772 | 7.333921 | AGAGAAGAGCAATAAATGAAGTGACTG | 59.666 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
1796 | 1813 | 3.145286 | TCAACCGAAGCAAATCATCACA | 58.855 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
1799 | 1816 | 4.107622 | CCAATCAACCGAAGCAAATCATC | 58.892 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
1876 | 1893 | 7.574750 | TGGGGGTATCTATTAGGAGAAAATGAA | 59.425 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1879 | 1896 | 7.184753 | GGATGGGGGTATCTATTAGGAGAAAAT | 59.815 | 40.741 | 0.00 | 0.00 | 0.00 | 1.82 |
1905 | 1922 | 8.477709 | TGCAAAACCGTTTTATATTTTTGTACG | 58.522 | 29.630 | 8.90 | 0.00 | 38.72 | 3.67 |
1910 | 1927 | 9.099454 | TGAACTGCAAAACCGTTTTATATTTTT | 57.901 | 25.926 | 8.90 | 0.00 | 0.00 | 1.94 |
1965 | 1982 | 7.672660 | TCTCTCAAAAATACTACCTCTGTACCA | 59.327 | 37.037 | 0.00 | 0.00 | 0.00 | 3.25 |
2005 | 2025 | 4.346127 | ACCACTTTCTTACTTACTTCCCGT | 59.654 | 41.667 | 0.00 | 0.00 | 0.00 | 5.28 |
2015 | 2039 | 7.661847 | CCTCAGTTCAATAACCACTTTCTTACT | 59.338 | 37.037 | 0.00 | 0.00 | 36.15 | 2.24 |
2016 | 2040 | 7.444487 | ACCTCAGTTCAATAACCACTTTCTTAC | 59.556 | 37.037 | 0.00 | 0.00 | 36.15 | 2.34 |
2017 | 2041 | 7.444183 | CACCTCAGTTCAATAACCACTTTCTTA | 59.556 | 37.037 | 0.00 | 0.00 | 36.15 | 2.10 |
2018 | 2042 | 6.263168 | CACCTCAGTTCAATAACCACTTTCTT | 59.737 | 38.462 | 0.00 | 0.00 | 36.15 | 2.52 |
2040 | 2064 | 1.202533 | AGCATAGCACATACCGTCACC | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
2044 | 2068 | 3.323691 | TGGATTAGCATAGCACATACCGT | 59.676 | 43.478 | 0.00 | 0.00 | 0.00 | 4.83 |
2085 | 2109 | 3.781341 | TTCAACAACGAATCACTACGC | 57.219 | 42.857 | 0.00 | 0.00 | 0.00 | 4.42 |
2210 | 2366 | 8.725148 | CCGAGGTAATCTTACGTGTTACTATAT | 58.275 | 37.037 | 0.00 | 0.00 | 34.50 | 0.86 |
2211 | 2367 | 7.931407 | TCCGAGGTAATCTTACGTGTTACTATA | 59.069 | 37.037 | 0.00 | 0.00 | 34.50 | 1.31 |
2213 | 2369 | 6.112734 | TCCGAGGTAATCTTACGTGTTACTA | 58.887 | 40.000 | 0.00 | 0.00 | 34.50 | 1.82 |
2214 | 2370 | 4.943705 | TCCGAGGTAATCTTACGTGTTACT | 59.056 | 41.667 | 0.00 | 0.00 | 34.50 | 2.24 |
2215 | 2371 | 5.235305 | TCCGAGGTAATCTTACGTGTTAC | 57.765 | 43.478 | 0.00 | 2.57 | 34.50 | 2.50 |
2216 | 2372 | 5.589855 | TCATCCGAGGTAATCTTACGTGTTA | 59.410 | 40.000 | 0.00 | 0.00 | 34.50 | 2.41 |
2218 | 2374 | 3.949754 | TCATCCGAGGTAATCTTACGTGT | 59.050 | 43.478 | 0.00 | 0.00 | 34.50 | 4.49 |
2219 | 2375 | 4.563337 | TCATCCGAGGTAATCTTACGTG | 57.437 | 45.455 | 0.00 | 0.00 | 34.50 | 4.49 |
2220 | 2376 | 4.885907 | TCTTCATCCGAGGTAATCTTACGT | 59.114 | 41.667 | 0.00 | 0.00 | 34.50 | 3.57 |
2221 | 2377 | 5.434352 | TCTTCATCCGAGGTAATCTTACG | 57.566 | 43.478 | 0.00 | 0.00 | 34.50 | 3.18 |
2222 | 2378 | 9.194271 | GTTATTCTTCATCCGAGGTAATCTTAC | 57.806 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
2223 | 2379 | 8.920174 | TGTTATTCTTCATCCGAGGTAATCTTA | 58.080 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2224 | 2380 | 7.711339 | GTGTTATTCTTCATCCGAGGTAATCTT | 59.289 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
2225 | 2381 | 7.070074 | AGTGTTATTCTTCATCCGAGGTAATCT | 59.930 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
2226 | 2382 | 7.210873 | AGTGTTATTCTTCATCCGAGGTAATC | 58.789 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
2227 | 2383 | 7.125792 | AGTGTTATTCTTCATCCGAGGTAAT | 57.874 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2228 | 2384 | 6.540438 | AGTGTTATTCTTCATCCGAGGTAA | 57.460 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
2229 | 2385 | 6.540438 | AAGTGTTATTCTTCATCCGAGGTA | 57.460 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
2230 | 2386 | 5.422214 | AAGTGTTATTCTTCATCCGAGGT | 57.578 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
2231 | 2387 | 8.077836 | GAATAAGTGTTATTCTTCATCCGAGG | 57.922 | 38.462 | 10.78 | 0.00 | 45.06 | 4.63 |
2243 | 2399 | 5.815581 | TCAGGGTGCAGAATAAGTGTTATT | 58.184 | 37.500 | 0.00 | 0.00 | 38.49 | 1.40 |
2244 | 2400 | 5.435686 | TCAGGGTGCAGAATAAGTGTTAT | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
2245 | 2401 | 4.901197 | TCAGGGTGCAGAATAAGTGTTA | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
2246 | 2402 | 3.788227 | TCAGGGTGCAGAATAAGTGTT | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 3.32 |
2247 | 2403 | 3.788227 | TTCAGGGTGCAGAATAAGTGT | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
2791 | 2947 | 8.614346 | CATTAAGGGAAATTAAACAATGCATGG | 58.386 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
3211 | 3385 | 8.659527 | AGGGAATCTTGAATTGTAAAATTTGGT | 58.340 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
3321 | 3495 | 7.279758 | CCTCCTCAGTCTCATTAGAAAATTGTC | 59.720 | 40.741 | 0.00 | 0.00 | 32.16 | 3.18 |
3445 | 3619 | 5.782893 | TTTTAATGGGCAATATCTTCCCG | 57.217 | 39.130 | 0.00 | 0.00 | 42.98 | 5.14 |
3492 | 3669 | 3.897141 | TGGTGCTTGTATCATAACCGA | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
3526 | 3703 | 4.103153 | ACCTGTTCAGGAAGAGTTGATGAA | 59.897 | 41.667 | 23.45 | 0.00 | 30.52 | 2.57 |
3527 | 3704 | 3.648067 | ACCTGTTCAGGAAGAGTTGATGA | 59.352 | 43.478 | 23.45 | 0.00 | 30.52 | 2.92 |
3592 | 3769 | 7.922811 | GGATCAGTGTTTTGAGAAGTGAAATTT | 59.077 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3594 | 3771 | 6.293626 | CGGATCAGTGTTTTGAGAAGTGAAAT | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
3655 | 3849 | 3.983741 | AGTCAAACTCTCCTTCGAACTG | 58.016 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3695 | 3892 | 4.204799 | AGAGGGCGGAATAAAATGGTAAC | 58.795 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
3820 | 4018 | 9.855021 | AAAAATAGGCTATGTTGTGTTTGATAC | 57.145 | 29.630 | 10.66 | 0.00 | 0.00 | 2.24 |
3826 | 4024 | 9.908152 | GAACTTAAAAATAGGCTATGTTGTGTT | 57.092 | 29.630 | 10.66 | 14.11 | 0.00 | 3.32 |
3828 | 4026 | 7.218204 | GCGAACTTAAAAATAGGCTATGTTGTG | 59.782 | 37.037 | 10.66 | 6.82 | 0.00 | 3.33 |
3947 | 4471 | 6.096846 | AGTCTGCAAAACCAACAAGAAGTTAT | 59.903 | 34.615 | 0.00 | 0.00 | 38.74 | 1.89 |
3951 | 4475 | 4.376340 | AGTCTGCAAAACCAACAAGAAG | 57.624 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
3952 | 4476 | 4.493547 | CAAGTCTGCAAAACCAACAAGAA | 58.506 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3953 | 4477 | 3.119173 | CCAAGTCTGCAAAACCAACAAGA | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
3973 | 4500 | 5.015515 | TGTTGTCCATGAAAATAGCATCCA | 58.984 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
4058 | 4585 | 4.863491 | TCAAAAATCTTGCTTCTGCTGAC | 58.137 | 39.130 | 0.00 | 0.00 | 40.48 | 3.51 |
4118 | 4645 | 7.068103 | CCATAAAGTAATGCATTAAGTGGACCA | 59.932 | 37.037 | 20.46 | 0.00 | 0.00 | 4.02 |
4360 | 4887 | 5.472148 | TGTTGTCCTGAAAATGATGATTGC | 58.528 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
4365 | 4892 | 5.393787 | CCCAGATGTTGTCCTGAAAATGATG | 60.394 | 44.000 | 0.00 | 0.00 | 32.37 | 3.07 |
4374 | 4901 | 2.026915 | TCATGTCCCAGATGTTGTCCTG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4380 | 4907 | 1.404181 | CGTCGTCATGTCCCAGATGTT | 60.404 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
4410 | 4938 | 4.402793 | GGAGACTAGGACTGCATAAACTGA | 59.597 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
4489 | 5019 | 9.179552 | CATAAAACATTCTCAATTCAACGACAA | 57.820 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
4491 | 5021 | 8.629986 | CACATAAAACATTCTCAATTCAACGAC | 58.370 | 33.333 | 0.00 | 0.00 | 0.00 | 4.34 |
4492 | 5022 | 8.563732 | TCACATAAAACATTCTCAATTCAACGA | 58.436 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
4493 | 5023 | 8.726650 | TCACATAAAACATTCTCAATTCAACG | 57.273 | 30.769 | 0.00 | 0.00 | 0.00 | 4.10 |
4571 | 5106 | 6.434028 | AGCAATCAATTAACACTAAGGAGCAA | 59.566 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
4574 | 5109 | 9.132521 | CAAAAGCAATCAATTAACACTAAGGAG | 57.867 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
4614 | 5149 | 7.062605 | CAGAGATGGAACCATTTTTCATTTTCG | 59.937 | 37.037 | 7.79 | 0.00 | 36.70 | 3.46 |
4625 | 5160 | 4.647564 | ACAGTTCAGAGATGGAACCATT | 57.352 | 40.909 | 7.79 | 0.00 | 44.40 | 3.16 |
4904 | 5449 | 6.699575 | ATTTGGTGAGCTCAATTATGTACC | 57.300 | 37.500 | 20.19 | 13.25 | 0.00 | 3.34 |
5013 | 5558 | 6.496571 | CAAGAAGGACTATACGGTTAGACAG | 58.503 | 44.000 | 1.41 | 0.00 | 0.00 | 3.51 |
5139 | 5684 | 8.564574 | TGCGGTAAAATCCTATGCTAAATAAAG | 58.435 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.