Multiple sequence alignment - TraesCS7A01G377100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G377100 chr7A 100.000 2699 0 0 2550 5248 550302048 550299350 0.000000e+00 4985.0
1 TraesCS7A01G377100 chr7A 100.000 2269 0 0 1 2269 550304597 550302329 0.000000e+00 4191.0
2 TraesCS7A01G377100 chr7A 96.241 266 10 0 1469 1734 530242490 530242225 2.240000e-118 436.0
3 TraesCS7A01G377100 chr7A 95.489 266 12 0 1469 1734 551457094 551457359 4.860000e-115 425.0
4 TraesCS7A01G377100 chr7A 95.149 268 13 0 1467 1734 439154569 439154302 1.750000e-114 424.0
5 TraesCS7A01G377100 chr7A 94.424 269 15 0 1467 1735 404467235 404466967 1.050000e-111 414.0
6 TraesCS7A01G377100 chr7B 88.347 2746 205 43 2550 5248 509568069 509565392 0.000000e+00 3192.0
7 TraesCS7A01G377100 chr7B 93.524 911 48 3 564 1463 509569737 509568827 0.000000e+00 1345.0
8 TraesCS7A01G377100 chr7B 90.431 418 32 5 1730 2144 509568829 509568417 1.290000e-150 544.0
9 TraesCS7A01G377100 chr7B 95.238 63 3 0 2146 2208 509568283 509568221 3.340000e-17 100.0
10 TraesCS7A01G377100 chr7B 84.375 96 7 7 423 516 509569840 509569751 2.600000e-13 87.9
11 TraesCS7A01G377100 chr7D 95.779 1374 51 5 3876 5248 483921432 483920065 0.000000e+00 2209.0
12 TraesCS7A01G377100 chr7D 95.135 1336 55 5 2550 3879 483923084 483921753 0.000000e+00 2098.0
13 TraesCS7A01G377100 chr7D 94.858 914 33 3 566 1465 483924566 483923653 0.000000e+00 1415.0
14 TraesCS7A01G377100 chr7D 94.167 240 10 2 1972 2208 483923444 483923206 3.860000e-96 363.0
15 TraesCS7A01G377100 chr7D 94.286 140 8 0 1730 1869 483923657 483923518 1.140000e-51 215.0
16 TraesCS7A01G377100 chr7D 87.097 62 3 4 2207 2266 633489750 633489808 1.220000e-06 65.8
17 TraesCS7A01G377100 chr3A 95.865 266 11 0 1467 1732 57093760 57093495 1.040000e-116 431.0
18 TraesCS7A01G377100 chr3A 95.113 266 13 0 1467 1732 194834533 194834268 2.260000e-113 420.0
19 TraesCS7A01G377100 chr3A 81.463 205 34 4 1179 1381 583243125 583243327 1.170000e-36 165.0
20 TraesCS7A01G377100 chr3A 95.833 48 0 1 2222 2269 214096053 214096008 5.640000e-10 76.8
21 TraesCS7A01G377100 chr3A 95.652 46 0 1 2222 2267 553876254 553876211 7.290000e-09 73.1
22 TraesCS7A01G377100 chr4A 95.113 266 13 0 1467 1732 185428253 185428518 2.260000e-113 420.0
23 TraesCS7A01G377100 chr6A 94.776 268 14 0 1467 1734 59094410 59094143 8.130000e-113 418.0
24 TraesCS7A01G377100 chr6A 93.750 48 1 1 2222 2269 202114131 202114086 2.620000e-08 71.3
25 TraesCS7A01G377100 chr2A 94.403 268 15 0 1467 1734 51317220 51316953 3.780000e-111 412.0
26 TraesCS7A01G377100 chr2A 95.833 48 0 1 2222 2269 183797389 183797344 5.640000e-10 76.8
27 TraesCS7A01G377100 chr2A 95.833 48 0 1 2222 2269 726979910 726979865 5.640000e-10 76.8
28 TraesCS7A01G377100 chr2A 81.111 90 17 0 1289 1378 612835024 612834935 7.290000e-09 73.1
29 TraesCS7A01G377100 chr3D 81.463 205 34 4 1179 1381 442173333 442173535 1.170000e-36 165.0
30 TraesCS7A01G377100 chr3B 80.976 205 35 4 1179 1381 579450896 579451098 5.440000e-35 159.0
31 TraesCS7A01G377100 chr3B 91.429 70 6 0 1912 1981 778340643 778340712 4.330000e-16 97.1
32 TraesCS7A01G377100 chr3B 92.424 66 4 1 1904 1968 487045488 487045553 5.600000e-15 93.5
33 TraesCS7A01G377100 chr2B 88.421 95 8 3 1895 1987 247368537 247368630 1.540000e-20 111.0
34 TraesCS7A01G377100 chr2B 89.474 76 8 0 1912 1987 331012787 331012712 4.330000e-16 97.1
35 TraesCS7A01G377100 chr2D 88.158 76 9 0 1912 1987 218045340 218045415 2.010000e-14 91.6
36 TraesCS7A01G377100 chr2D 81.111 90 17 0 1289 1378 471055944 471055855 7.290000e-09 73.1
37 TraesCS7A01G377100 chr4B 87.342 79 9 1 1900 1978 31873757 31873680 7.240000e-14 89.8
38 TraesCS7A01G377100 chr5D 87.838 74 9 0 1908 1981 9120390 9120317 2.600000e-13 87.9
39 TraesCS7A01G377100 chr5D 84.884 86 10 2 1896 1981 5804146 5804064 3.370000e-12 84.2
40 TraesCS7A01G377100 chr6D 92.308 52 1 2 2215 2266 160869567 160869615 2.620000e-08 71.3
41 TraesCS7A01G377100 chr1A 93.750 48 1 1 2222 2269 308973949 308973994 2.620000e-08 71.3
42 TraesCS7A01G377100 chr1A 93.750 48 1 1 2222 2269 574913759 574913714 2.620000e-08 71.3
43 TraesCS7A01G377100 chr1A 87.500 56 7 0 1289 1344 551592912 551592857 1.220000e-06 65.8
44 TraesCS7A01G377100 chr1B 87.500 56 7 0 1289 1344 631967499 631967444 1.220000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G377100 chr7A 550299350 550304597 5247 True 4588.00 4985 100.000 1 5248 2 chr7A.!!$R4 5247
1 TraesCS7A01G377100 chr7B 509565392 509569840 4448 True 1053.78 3192 90.383 423 5248 5 chr7B.!!$R1 4825
2 TraesCS7A01G377100 chr7D 483920065 483924566 4501 True 1260.00 2209 94.845 566 5248 5 chr7D.!!$R1 4682


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 541 0.323087 GCCCGTAAACCCACTCCATT 60.323 55.0 0.0 0.0 0.0 3.16 F
1463 1480 0.034616 AGTTTGCTCGCTCTGCTCTT 59.965 50.0 0.0 0.0 0.0 2.85 F
3321 3495 0.321653 GGTGGCAGTCCTAAGTGTGG 60.322 60.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2064 1.202533 AGCATAGCACATACCGTCACC 60.203 52.381 0.0 0.0 0.00 4.02 R
3445 3619 5.782893 TTTTAATGGGCAATATCTTCCCG 57.217 39.130 0.0 0.0 42.98 5.14 R
4380 4907 1.404181 CGTCGTCATGTCCCAGATGTT 60.404 52.381 0.0 0.0 0.00 2.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 9.890629 ATGCATCTTTAACACTTTCTAGATACA 57.109 29.630 0.00 0.00 0.00 2.29
176 177 9.890629 TGCATCTTTAACACTTTCTAGATACAT 57.109 29.630 0.00 0.00 0.00 2.29
337 338 7.452630 TTTTATGTTTGCTTTTTCCGTACAC 57.547 32.000 0.00 0.00 0.00 2.90
338 339 4.640789 ATGTTTGCTTTTTCCGTACACA 57.359 36.364 0.00 0.00 0.00 3.72
339 340 4.640789 TGTTTGCTTTTTCCGTACACAT 57.359 36.364 0.00 0.00 0.00 3.21
340 341 5.752892 TGTTTGCTTTTTCCGTACACATA 57.247 34.783 0.00 0.00 0.00 2.29
341 342 5.753744 TGTTTGCTTTTTCCGTACACATAG 58.246 37.500 0.00 0.00 0.00 2.23
342 343 5.297278 TGTTTGCTTTTTCCGTACACATAGT 59.703 36.000 0.00 0.00 0.00 2.12
343 344 6.482641 TGTTTGCTTTTTCCGTACACATAGTA 59.517 34.615 0.00 0.00 0.00 1.82
456 457 8.994170 CAAAAGTAAAGAAAACAGTGGGAAAAA 58.006 29.630 0.00 0.00 0.00 1.94
505 506 3.452786 CTCGCTTCAGGAGGCCGA 61.453 66.667 0.00 0.00 0.00 5.54
506 507 3.423162 CTCGCTTCAGGAGGCCGAG 62.423 68.421 0.00 9.43 32.03 4.63
507 508 4.521062 CGCTTCAGGAGGCCGAGG 62.521 72.222 0.00 0.00 0.00 4.63
508 509 4.847444 GCTTCAGGAGGCCGAGGC 62.847 72.222 5.37 5.37 41.06 4.70
509 510 3.393970 CTTCAGGAGGCCGAGGCA 61.394 66.667 16.65 0.00 44.11 4.75
510 511 3.382803 CTTCAGGAGGCCGAGGCAG 62.383 68.421 16.65 0.00 44.11 4.85
528 529 4.841861 CCATTCGCGGGCCCGTAA 62.842 66.667 42.53 34.86 42.09 3.18
529 530 2.820479 CATTCGCGGGCCCGTAAA 60.820 61.111 42.53 34.46 42.09 2.01
530 531 2.820922 ATTCGCGGGCCCGTAAAC 60.821 61.111 42.53 26.19 42.09 2.01
536 537 2.045634 GGGCCCGTAAACCCACTC 60.046 66.667 5.69 0.00 46.22 3.51
537 538 2.045634 GGCCCGTAAACCCACTCC 60.046 66.667 0.00 0.00 0.00 3.85
538 539 2.751688 GCCCGTAAACCCACTCCA 59.248 61.111 0.00 0.00 0.00 3.86
539 540 1.301954 GCCCGTAAACCCACTCCAT 59.698 57.895 0.00 0.00 0.00 3.41
540 541 0.323087 GCCCGTAAACCCACTCCATT 60.323 55.000 0.00 0.00 0.00 3.16
541 542 1.746470 CCCGTAAACCCACTCCATTC 58.254 55.000 0.00 0.00 0.00 2.67
542 543 1.365699 CCGTAAACCCACTCCATTCG 58.634 55.000 0.00 0.00 0.00 3.34
543 544 1.066716 CCGTAAACCCACTCCATTCGA 60.067 52.381 0.00 0.00 0.00 3.71
544 545 2.268298 CGTAAACCCACTCCATTCGAG 58.732 52.381 0.00 0.00 44.95 4.04
579 580 8.424274 AAGTAAAGAAAACATTCTGCCTTTTG 57.576 30.769 0.00 0.00 0.00 2.44
714 715 1.308069 ATTGCAAAGCCATCGCGAGT 61.308 50.000 16.66 0.00 41.18 4.18
723 724 1.528542 CATCGCGAGTCCCTCCCTA 60.529 63.158 16.66 0.00 0.00 3.53
779 782 2.631160 TCGGTTTCTCCAAAGCTTCA 57.369 45.000 0.00 0.00 37.78 3.02
848 856 7.519328 GCTCCCTAGATTAGATTCGATCGTATC 60.519 44.444 22.71 22.71 0.00 2.24
866 874 7.135089 TCGTATCGAATTGAATTGGTTTTGA 57.865 32.000 0.00 0.00 31.06 2.69
878 886 1.337635 TGGTTTTGATTGGATTGCGCC 60.338 47.619 4.18 0.00 0.00 6.53
895 903 0.378610 GCCGGAGTGAATTTAGCTGC 59.621 55.000 5.05 0.00 0.00 5.25
906 914 5.975939 GTGAATTTAGCTGCAGATTGGATTC 59.024 40.000 20.43 19.67 0.00 2.52
909 917 1.661341 AGCTGCAGATTGGATTCGTC 58.339 50.000 20.43 0.00 0.00 4.20
928 945 1.483827 TCTCGCTGATGCATTTCCTCT 59.516 47.619 0.00 0.00 39.64 3.69
929 946 1.598132 CTCGCTGATGCATTTCCTCTG 59.402 52.381 0.00 0.00 39.64 3.35
1110 1127 1.012124 CGACGACGATGAGACCGAG 60.012 63.158 0.00 0.00 42.66 4.63
1168 1185 3.697747 CTGTTGGGACCGGCGGTA 61.698 66.667 34.29 14.83 35.25 4.02
1197 1214 4.787871 GGGCCTCCGATGATGAAG 57.212 61.111 0.84 0.00 0.00 3.02
1463 1480 0.034616 AGTTTGCTCGCTCTGCTCTT 59.965 50.000 0.00 0.00 0.00 2.85
1464 1481 1.273606 AGTTTGCTCGCTCTGCTCTTA 59.726 47.619 0.00 0.00 0.00 2.10
1465 1482 1.658095 GTTTGCTCGCTCTGCTCTTAG 59.342 52.381 0.00 0.00 0.00 2.18
1466 1483 1.177401 TTGCTCGCTCTGCTCTTAGA 58.823 50.000 0.00 0.00 0.00 2.10
1467 1484 0.453793 TGCTCGCTCTGCTCTTAGAC 59.546 55.000 0.00 0.00 0.00 2.59
1468 1485 0.453793 GCTCGCTCTGCTCTTAGACA 59.546 55.000 0.00 0.00 0.00 3.41
1469 1486 1.533756 GCTCGCTCTGCTCTTAGACAG 60.534 57.143 5.78 5.78 35.15 3.51
1470 1487 1.742831 CTCGCTCTGCTCTTAGACAGT 59.257 52.381 10.11 0.00 35.37 3.55
1471 1488 1.470494 TCGCTCTGCTCTTAGACAGTG 59.530 52.381 10.11 9.24 35.37 3.66
1472 1489 1.468908 CGCTCTGCTCTTAGACAGTGG 60.469 57.143 10.11 7.12 35.37 4.00
1473 1490 1.134848 GCTCTGCTCTTAGACAGTGGG 60.135 57.143 10.11 5.50 35.37 4.61
1474 1491 2.451490 CTCTGCTCTTAGACAGTGGGA 58.549 52.381 10.11 0.00 35.37 4.37
1475 1492 2.426738 CTCTGCTCTTAGACAGTGGGAG 59.573 54.545 10.11 0.00 35.37 4.30
1476 1493 2.175202 CTGCTCTTAGACAGTGGGAGT 58.825 52.381 0.00 0.00 0.00 3.85
1477 1494 3.010250 TCTGCTCTTAGACAGTGGGAGTA 59.990 47.826 10.11 0.00 35.37 2.59
1478 1495 3.764434 CTGCTCTTAGACAGTGGGAGTAA 59.236 47.826 0.00 0.00 0.00 2.24
1479 1496 3.510360 TGCTCTTAGACAGTGGGAGTAAC 59.490 47.826 0.00 0.00 0.00 2.50
1480 1497 3.764972 GCTCTTAGACAGTGGGAGTAACT 59.235 47.826 0.00 0.00 0.00 2.24
1481 1498 4.221041 GCTCTTAGACAGTGGGAGTAACTT 59.779 45.833 0.00 0.00 0.00 2.66
1482 1499 5.622687 GCTCTTAGACAGTGGGAGTAACTTC 60.623 48.000 0.00 0.00 0.00 3.01
1483 1500 5.391256 TCTTAGACAGTGGGAGTAACTTCA 58.609 41.667 0.00 0.00 0.00 3.02
1484 1501 5.477291 TCTTAGACAGTGGGAGTAACTTCAG 59.523 44.000 0.00 0.00 0.00 3.02
1485 1502 2.300437 AGACAGTGGGAGTAACTTCAGC 59.700 50.000 0.00 0.00 0.00 4.26
1486 1503 2.037251 GACAGTGGGAGTAACTTCAGCA 59.963 50.000 0.00 0.00 0.00 4.41
1487 1504 2.037772 ACAGTGGGAGTAACTTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
1488 1505 2.037772 CAGTGGGAGTAACTTCAGCAGT 59.962 50.000 0.00 0.00 37.30 4.40
1489 1506 3.258372 CAGTGGGAGTAACTTCAGCAGTA 59.742 47.826 0.00 0.00 32.94 2.74
1490 1507 3.901844 AGTGGGAGTAACTTCAGCAGTAA 59.098 43.478 0.00 0.00 32.94 2.24
1491 1508 3.995048 GTGGGAGTAACTTCAGCAGTAAC 59.005 47.826 0.00 0.00 32.94 2.50
1492 1509 3.644265 TGGGAGTAACTTCAGCAGTAACA 59.356 43.478 0.00 0.00 32.94 2.41
1493 1510 4.286032 TGGGAGTAACTTCAGCAGTAACAT 59.714 41.667 0.00 0.00 32.94 2.71
1494 1511 4.870991 GGGAGTAACTTCAGCAGTAACATC 59.129 45.833 0.00 0.00 32.94 3.06
1495 1512 4.563184 GGAGTAACTTCAGCAGTAACATCG 59.437 45.833 0.00 0.00 32.94 3.84
1496 1513 5.386958 AGTAACTTCAGCAGTAACATCGA 57.613 39.130 0.00 0.00 32.94 3.59
1497 1514 5.403246 AGTAACTTCAGCAGTAACATCGAG 58.597 41.667 0.00 0.00 32.94 4.04
1498 1515 3.944055 ACTTCAGCAGTAACATCGAGT 57.056 42.857 0.00 0.00 31.97 4.18
1499 1516 3.839293 ACTTCAGCAGTAACATCGAGTC 58.161 45.455 0.00 0.00 31.97 3.36
1500 1517 2.941453 TCAGCAGTAACATCGAGTCC 57.059 50.000 0.00 0.00 0.00 3.85
1501 1518 2.167662 TCAGCAGTAACATCGAGTCCA 58.832 47.619 0.00 0.00 0.00 4.02
1502 1519 2.560981 TCAGCAGTAACATCGAGTCCAA 59.439 45.455 0.00 0.00 0.00 3.53
1503 1520 2.668457 CAGCAGTAACATCGAGTCCAAC 59.332 50.000 0.00 0.00 0.00 3.77
1504 1521 2.563179 AGCAGTAACATCGAGTCCAACT 59.437 45.455 0.00 0.00 0.00 3.16
1505 1522 3.006967 AGCAGTAACATCGAGTCCAACTT 59.993 43.478 0.00 0.00 0.00 2.66
1506 1523 4.219944 AGCAGTAACATCGAGTCCAACTTA 59.780 41.667 0.00 0.00 0.00 2.24
1507 1524 4.927425 GCAGTAACATCGAGTCCAACTTAA 59.073 41.667 0.00 0.00 0.00 1.85
1508 1525 5.163982 GCAGTAACATCGAGTCCAACTTAAC 60.164 44.000 0.00 0.00 0.00 2.01
1509 1526 5.924254 CAGTAACATCGAGTCCAACTTAACA 59.076 40.000 0.00 0.00 0.00 2.41
1510 1527 6.422701 CAGTAACATCGAGTCCAACTTAACAA 59.577 38.462 0.00 0.00 0.00 2.83
1511 1528 6.987992 AGTAACATCGAGTCCAACTTAACAAA 59.012 34.615 0.00 0.00 0.00 2.83
1512 1529 6.877611 AACATCGAGTCCAACTTAACAAAT 57.122 33.333 0.00 0.00 0.00 2.32
1513 1530 6.877611 ACATCGAGTCCAACTTAACAAATT 57.122 33.333 0.00 0.00 0.00 1.82
1514 1531 7.272037 ACATCGAGTCCAACTTAACAAATTT 57.728 32.000 0.00 0.00 0.00 1.82
1515 1532 7.138736 ACATCGAGTCCAACTTAACAAATTTG 58.861 34.615 16.67 16.67 0.00 2.32
1516 1533 6.928979 TCGAGTCCAACTTAACAAATTTGA 57.071 33.333 24.64 0.00 0.00 2.69
1517 1534 7.504924 TCGAGTCCAACTTAACAAATTTGAT 57.495 32.000 24.64 15.39 0.00 2.57
1518 1535 7.936584 TCGAGTCCAACTTAACAAATTTGATT 58.063 30.769 24.64 15.92 0.00 2.57
1519 1536 9.058174 TCGAGTCCAACTTAACAAATTTGATTA 57.942 29.630 24.64 15.02 0.00 1.75
1520 1537 9.840427 CGAGTCCAACTTAACAAATTTGATTAT 57.160 29.630 24.64 9.85 0.00 1.28
1524 1541 9.703892 TCCAACTTAACAAATTTGATTATGTGG 57.296 29.630 24.64 20.68 0.00 4.17
1525 1542 8.442384 CCAACTTAACAAATTTGATTATGTGGC 58.558 33.333 24.64 0.00 0.00 5.01
1526 1543 8.986847 CAACTTAACAAATTTGATTATGTGGCA 58.013 29.630 24.64 3.58 0.00 4.92
1527 1544 9.553064 AACTTAACAAATTTGATTATGTGGCAA 57.447 25.926 24.64 1.06 0.00 4.52
1528 1545 9.723601 ACTTAACAAATTTGATTATGTGGCAAT 57.276 25.926 24.64 0.00 0.00 3.56
1529 1546 9.976255 CTTAACAAATTTGATTATGTGGCAATG 57.024 29.630 24.64 0.00 0.00 2.82
1530 1547 9.716531 TTAACAAATTTGATTATGTGGCAATGA 57.283 25.926 24.64 0.00 0.00 2.57
1531 1548 7.837202 ACAAATTTGATTATGTGGCAATGAG 57.163 32.000 24.64 0.00 0.00 2.90
1532 1549 7.388437 ACAAATTTGATTATGTGGCAATGAGT 58.612 30.769 24.64 0.00 0.00 3.41
1533 1550 7.879160 ACAAATTTGATTATGTGGCAATGAGTT 59.121 29.630 24.64 0.00 0.00 3.01
1534 1551 9.368674 CAAATTTGATTATGTGGCAATGAGTTA 57.631 29.630 13.08 0.00 0.00 2.24
1535 1552 9.941325 AAATTTGATTATGTGGCAATGAGTTAA 57.059 25.926 0.00 0.00 0.00 2.01
1537 1554 8.929827 TTTGATTATGTGGCAATGAGTTAATG 57.070 30.769 0.00 0.00 0.00 1.90
1538 1555 7.878547 TGATTATGTGGCAATGAGTTAATGA 57.121 32.000 0.00 0.00 0.00 2.57
1539 1556 8.291191 TGATTATGTGGCAATGAGTTAATGAA 57.709 30.769 0.00 0.00 0.00 2.57
1540 1557 8.407832 TGATTATGTGGCAATGAGTTAATGAAG 58.592 33.333 0.00 0.00 0.00 3.02
1541 1558 7.936496 TTATGTGGCAATGAGTTAATGAAGA 57.064 32.000 0.00 0.00 0.00 2.87
1542 1559 5.885230 TGTGGCAATGAGTTAATGAAGAG 57.115 39.130 0.00 0.00 0.00 2.85
1543 1560 5.559770 TGTGGCAATGAGTTAATGAAGAGA 58.440 37.500 0.00 0.00 0.00 3.10
1544 1561 5.645067 TGTGGCAATGAGTTAATGAAGAGAG 59.355 40.000 0.00 0.00 0.00 3.20
1545 1562 5.877012 GTGGCAATGAGTTAATGAAGAGAGA 59.123 40.000 0.00 0.00 0.00 3.10
1546 1563 6.036953 GTGGCAATGAGTTAATGAAGAGAGAG 59.963 42.308 0.00 0.00 0.00 3.20
1547 1564 5.526846 GGCAATGAGTTAATGAAGAGAGAGG 59.473 44.000 0.00 0.00 0.00 3.69
1548 1565 6.112058 GCAATGAGTTAATGAAGAGAGAGGT 58.888 40.000 0.00 0.00 0.00 3.85
1549 1566 7.268586 GCAATGAGTTAATGAAGAGAGAGGTA 58.731 38.462 0.00 0.00 0.00 3.08
1550 1567 7.437862 GCAATGAGTTAATGAAGAGAGAGGTAG 59.562 40.741 0.00 0.00 0.00 3.18
1551 1568 8.474025 CAATGAGTTAATGAAGAGAGAGGTAGT 58.526 37.037 0.00 0.00 0.00 2.73
1552 1569 8.602472 ATGAGTTAATGAAGAGAGAGGTAGTT 57.398 34.615 0.00 0.00 0.00 2.24
1553 1570 9.702253 ATGAGTTAATGAAGAGAGAGGTAGTTA 57.298 33.333 0.00 0.00 0.00 2.24
1554 1571 9.702253 TGAGTTAATGAAGAGAGAGGTAGTTAT 57.298 33.333 0.00 0.00 0.00 1.89
1598 1615 4.811969 ACATCACATGTTCCAATGCAAT 57.188 36.364 0.00 0.00 41.63 3.56
1599 1616 5.918426 ACATCACATGTTCCAATGCAATA 57.082 34.783 0.00 0.00 41.63 1.90
1600 1617 6.474140 ACATCACATGTTCCAATGCAATAT 57.526 33.333 0.00 0.00 41.63 1.28
1601 1618 6.277605 ACATCACATGTTCCAATGCAATATG 58.722 36.000 0.00 0.00 41.63 1.78
1602 1619 6.097129 ACATCACATGTTCCAATGCAATATGA 59.903 34.615 0.61 0.00 41.63 2.15
1603 1620 6.139048 TCACATGTTCCAATGCAATATGAG 57.861 37.500 0.61 0.00 0.00 2.90
1604 1621 5.653330 TCACATGTTCCAATGCAATATGAGT 59.347 36.000 0.61 0.00 0.00 3.41
1605 1622 5.975344 CACATGTTCCAATGCAATATGAGTC 59.025 40.000 0.61 0.00 0.00 3.36
1606 1623 5.889853 ACATGTTCCAATGCAATATGAGTCT 59.110 36.000 0.61 0.00 0.00 3.24
1607 1624 7.012610 CACATGTTCCAATGCAATATGAGTCTA 59.987 37.037 0.61 0.00 0.00 2.59
1608 1625 7.722728 ACATGTTCCAATGCAATATGAGTCTAT 59.277 33.333 0.61 0.00 0.00 1.98
1609 1626 9.223099 CATGTTCCAATGCAATATGAGTCTATA 57.777 33.333 0.00 0.00 0.00 1.31
1610 1627 9.797642 ATGTTCCAATGCAATATGAGTCTATAA 57.202 29.630 0.00 0.00 0.00 0.98
1611 1628 9.056005 TGTTCCAATGCAATATGAGTCTATAAC 57.944 33.333 0.00 0.00 0.00 1.89
1612 1629 8.507249 GTTCCAATGCAATATGAGTCTATAACC 58.493 37.037 0.00 0.00 0.00 2.85
1613 1630 7.977818 TCCAATGCAATATGAGTCTATAACCT 58.022 34.615 0.00 0.00 0.00 3.50
1614 1631 9.100197 TCCAATGCAATATGAGTCTATAACCTA 57.900 33.333 0.00 0.00 0.00 3.08
1615 1632 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
1642 1659 8.470040 AAATGAATCTTTGCATGTTATCACAC 57.530 30.769 0.00 0.00 35.03 3.82
1643 1660 6.822667 TGAATCTTTGCATGTTATCACACT 57.177 33.333 0.00 0.00 35.03 3.55
1644 1661 7.218228 TGAATCTTTGCATGTTATCACACTT 57.782 32.000 0.00 0.00 35.03 3.16
1645 1662 8.334263 TGAATCTTTGCATGTTATCACACTTA 57.666 30.769 0.00 0.00 35.03 2.24
1646 1663 8.791675 TGAATCTTTGCATGTTATCACACTTAA 58.208 29.630 0.00 0.00 35.03 1.85
1647 1664 9.282247 GAATCTTTGCATGTTATCACACTTAAG 57.718 33.333 0.00 0.00 35.03 1.85
1648 1665 7.744087 TCTTTGCATGTTATCACACTTAAGT 57.256 32.000 1.12 1.12 35.03 2.24
1649 1666 8.165239 TCTTTGCATGTTATCACACTTAAGTT 57.835 30.769 5.07 0.00 35.03 2.66
1650 1667 9.278978 TCTTTGCATGTTATCACACTTAAGTTA 57.721 29.630 5.07 0.00 35.03 2.24
1651 1668 9.329913 CTTTGCATGTTATCACACTTAAGTTAC 57.670 33.333 5.07 0.00 35.03 2.50
1652 1669 8.615878 TTGCATGTTATCACACTTAAGTTACT 57.384 30.769 5.07 0.00 35.03 2.24
1653 1670 9.713713 TTGCATGTTATCACACTTAAGTTACTA 57.286 29.630 5.07 0.00 35.03 1.82
1654 1671 9.146984 TGCATGTTATCACACTTAAGTTACTAC 57.853 33.333 5.07 0.94 35.03 2.73
1655 1672 8.601476 GCATGTTATCACACTTAAGTTACTACC 58.399 37.037 5.07 0.00 35.03 3.18
1656 1673 9.095065 CATGTTATCACACTTAAGTTACTACCC 57.905 37.037 5.07 0.00 35.03 3.69
1657 1674 8.192743 TGTTATCACACTTAAGTTACTACCCA 57.807 34.615 5.07 0.00 0.00 4.51
1658 1675 8.090214 TGTTATCACACTTAAGTTACTACCCAC 58.910 37.037 5.07 0.00 0.00 4.61
1659 1676 6.930068 ATCACACTTAAGTTACTACCCACT 57.070 37.500 5.07 0.00 0.00 4.00
1660 1677 9.532494 TTATCACACTTAAGTTACTACCCACTA 57.468 33.333 5.07 0.00 0.00 2.74
1661 1678 8.605325 ATCACACTTAAGTTACTACCCACTAT 57.395 34.615 5.07 0.00 0.00 2.12
1662 1679 7.833786 TCACACTTAAGTTACTACCCACTATG 58.166 38.462 5.07 0.00 0.00 2.23
1663 1680 7.670979 TCACACTTAAGTTACTACCCACTATGA 59.329 37.037 5.07 0.00 0.00 2.15
1664 1681 8.308931 CACACTTAAGTTACTACCCACTATGAA 58.691 37.037 5.07 0.00 0.00 2.57
1665 1682 8.529476 ACACTTAAGTTACTACCCACTATGAAG 58.471 37.037 5.07 0.00 0.00 3.02
1666 1683 8.746530 CACTTAAGTTACTACCCACTATGAAGA 58.253 37.037 5.07 0.00 0.00 2.87
1667 1684 9.490083 ACTTAAGTTACTACCCACTATGAAGAT 57.510 33.333 1.12 0.00 0.00 2.40
1724 1741 8.978472 ACTAGTGTATGTTACTATCCATTGTGT 58.022 33.333 0.00 0.00 30.83 3.72
1725 1742 9.464714 CTAGTGTATGTTACTATCCATTGTGTC 57.535 37.037 0.00 0.00 30.83 3.67
1726 1743 8.079211 AGTGTATGTTACTATCCATTGTGTCT 57.921 34.615 0.00 0.00 0.00 3.41
1727 1744 8.540388 AGTGTATGTTACTATCCATTGTGTCTT 58.460 33.333 0.00 0.00 0.00 3.01
1728 1745 8.604035 GTGTATGTTACTATCCATTGTGTCTTG 58.396 37.037 0.00 0.00 0.00 3.02
1729 1746 8.318412 TGTATGTTACTATCCATTGTGTCTTGT 58.682 33.333 0.00 0.00 0.00 3.16
1730 1747 7.849804 ATGTTACTATCCATTGTGTCTTGTC 57.150 36.000 0.00 0.00 0.00 3.18
1731 1748 7.004555 TGTTACTATCCATTGTGTCTTGTCT 57.995 36.000 0.00 0.00 0.00 3.41
1755 1772 0.598562 TGCTTCTAGATCGATCGGGC 59.401 55.000 19.33 18.11 0.00 6.13
1767 1784 1.740380 CGATCGGGCAGTCACTTCATT 60.740 52.381 7.38 0.00 0.00 2.57
1796 1813 9.561069 TTGCTCTTCTCTTGTTAGTTTAGATTT 57.439 29.630 0.00 0.00 0.00 2.17
1873 1890 8.863872 ACAGTTTGCCTAGTTGTATAGAATTT 57.136 30.769 0.00 0.00 0.00 1.82
1903 1920 7.744068 TCATTTTCTCCTAATAGATACCCCCAT 59.256 37.037 0.00 0.00 0.00 4.00
1904 1921 7.569599 TTTTCTCCTAATAGATACCCCCATC 57.430 40.000 0.00 0.00 0.00 3.51
1905 1922 5.222278 TCTCCTAATAGATACCCCCATCC 57.778 47.826 0.00 0.00 0.00 3.51
1910 1927 3.839323 ATAGATACCCCCATCCGTACA 57.161 47.619 0.00 0.00 0.00 2.90
1920 1937 6.433441 ACCCCCATCCGTACAAAAATATAAA 58.567 36.000 0.00 0.00 0.00 1.40
1934 1951 8.884726 ACAAAAATATAAAACGGTTTTGCAGTT 58.115 25.926 24.93 15.66 40.95 3.16
2005 2025 2.503331 TGAGAGAAATTTTGCGGCTGA 58.497 42.857 0.00 0.00 0.00 4.26
2015 2039 2.102109 TTGCGGCTGACGGGAAGTAA 62.102 55.000 4.52 0.00 44.51 2.24
2016 2040 1.810030 GCGGCTGACGGGAAGTAAG 60.810 63.158 4.52 0.00 44.51 2.34
2017 2041 1.590147 CGGCTGACGGGAAGTAAGT 59.410 57.895 0.00 0.00 39.42 2.24
2018 2042 0.813184 CGGCTGACGGGAAGTAAGTA 59.187 55.000 0.00 0.00 39.42 2.24
2040 2064 8.608844 AGTAAGAAAGTGGTTATTGAACTGAG 57.391 34.615 0.00 0.00 35.74 3.35
2044 2068 4.974645 AGTGGTTATTGAACTGAGGTGA 57.025 40.909 0.00 0.00 35.74 4.02
2085 2109 2.159393 CCATGCGATTGTGTTACCAAGG 60.159 50.000 0.00 0.00 0.00 3.61
2208 2364 0.883833 GAAGGGGTCGACGACACTTA 59.116 55.000 27.94 0.00 36.06 2.24
2209 2365 1.475682 GAAGGGGTCGACGACACTTAT 59.524 52.381 27.94 15.17 36.06 1.73
2210 2366 2.425143 AGGGGTCGACGACACTTATA 57.575 50.000 27.94 0.00 36.06 0.98
2211 2367 2.941480 AGGGGTCGACGACACTTATAT 58.059 47.619 27.94 8.18 36.06 0.86
2213 2369 4.660168 AGGGGTCGACGACACTTATATAT 58.340 43.478 27.94 4.88 36.06 0.86
2214 2370 5.809001 AGGGGTCGACGACACTTATATATA 58.191 41.667 27.94 0.00 36.06 0.86
2215 2371 5.879223 AGGGGTCGACGACACTTATATATAG 59.121 44.000 27.94 0.00 36.06 1.31
2216 2372 5.645497 GGGGTCGACGACACTTATATATAGT 59.355 44.000 27.94 0.00 36.06 2.12
2218 2374 7.334421 GGGGTCGACGACACTTATATATAGTAA 59.666 40.741 27.94 0.00 36.06 2.24
2219 2375 8.171840 GGGTCGACGACACTTATATATAGTAAC 58.828 40.741 27.77 5.49 32.50 2.50
2220 2376 8.712363 GGTCGACGACACTTATATATAGTAACA 58.288 37.037 27.77 0.00 33.68 2.41
2221 2377 9.522454 GTCGACGACACTTATATATAGTAACAC 57.478 37.037 22.66 0.00 32.09 3.32
2222 2378 8.427774 TCGACGACACTTATATATAGTAACACG 58.572 37.037 0.00 0.00 0.00 4.49
2223 2379 8.217115 CGACGACACTTATATATAGTAACACGT 58.783 37.037 0.00 0.00 0.00 4.49
2236 2392 5.240713 AGTAACACGTAAGATTACCTCGG 57.759 43.478 0.00 0.00 40.70 4.63
2239 2395 4.303086 ACACGTAAGATTACCTCGGATG 57.697 45.455 0.00 0.00 43.62 3.51
2240 2396 3.949754 ACACGTAAGATTACCTCGGATGA 59.050 43.478 0.00 0.00 43.62 2.92
2241 2397 4.400251 ACACGTAAGATTACCTCGGATGAA 59.600 41.667 0.00 0.00 43.62 2.57
2242 2398 4.976731 CACGTAAGATTACCTCGGATGAAG 59.023 45.833 0.00 0.00 43.62 3.02
2243 2399 4.885907 ACGTAAGATTACCTCGGATGAAGA 59.114 41.667 0.00 0.00 43.62 2.87
2244 2400 5.359009 ACGTAAGATTACCTCGGATGAAGAA 59.641 40.000 0.00 0.00 43.62 2.52
2245 2401 6.040616 ACGTAAGATTACCTCGGATGAAGAAT 59.959 38.462 0.00 0.00 43.62 2.40
2246 2402 7.230108 ACGTAAGATTACCTCGGATGAAGAATA 59.770 37.037 0.00 0.00 43.62 1.75
2247 2403 8.080417 CGTAAGATTACCTCGGATGAAGAATAA 58.920 37.037 0.00 0.00 43.02 1.40
2248 2404 9.194271 GTAAGATTACCTCGGATGAAGAATAAC 57.806 37.037 0.00 0.00 0.00 1.89
2249 2405 7.361457 AGATTACCTCGGATGAAGAATAACA 57.639 36.000 0.00 0.00 0.00 2.41
2250 2406 7.210873 AGATTACCTCGGATGAAGAATAACAC 58.789 38.462 0.00 0.00 0.00 3.32
2251 2407 6.540438 TTACCTCGGATGAAGAATAACACT 57.460 37.500 0.00 0.00 0.00 3.55
2253 2409 6.540438 ACCTCGGATGAAGAATAACACTTA 57.460 37.500 0.00 0.00 0.00 2.24
2254 2410 7.125792 ACCTCGGATGAAGAATAACACTTAT 57.874 36.000 0.00 0.00 0.00 1.73
2265 2421 6.124088 GAATAACACTTATTCTGCACCCTG 57.876 41.667 7.27 0.00 45.06 4.45
2266 2422 3.788227 AACACTTATTCTGCACCCTGA 57.212 42.857 0.00 0.00 0.00 3.86
2267 2423 3.788227 ACACTTATTCTGCACCCTGAA 57.212 42.857 0.00 0.00 34.12 3.02
2268 2424 4.307032 ACACTTATTCTGCACCCTGAAT 57.693 40.909 4.54 4.54 41.00 2.57
2735 2891 5.236911 GCATTGTCATTTGTCACCAACAATT 59.763 36.000 0.00 0.00 46.94 2.32
2751 2907 9.376075 CACCAACAATTATGCCATATTTGTTTA 57.624 29.630 24.47 0.00 42.20 2.01
3141 3315 4.219288 GCAAAATGAACTCTCACAGGGAAT 59.781 41.667 0.00 0.00 33.30 3.01
3211 3385 4.973168 AGCAGTCAGACAATTTCCTTACA 58.027 39.130 2.66 0.00 0.00 2.41
3321 3495 0.321653 GGTGGCAGTCCTAAGTGTGG 60.322 60.000 0.00 0.00 0.00 4.17
3370 3544 5.295540 GGCTTCTTACAATGATCTCAACTCC 59.704 44.000 0.00 0.00 0.00 3.85
3373 3547 6.280855 TCTTACAATGATCTCAACTCCGAA 57.719 37.500 0.00 0.00 0.00 4.30
3492 3669 4.446889 GGAGCTCCCTTCATTCCAATATGT 60.447 45.833 23.19 0.00 0.00 2.29
3526 3703 1.102978 GCACCAACTTGTTGTGTCCT 58.897 50.000 11.82 0.00 0.00 3.85
3527 3704 1.476488 GCACCAACTTGTTGTGTCCTT 59.524 47.619 11.82 0.00 0.00 3.36
3695 3892 5.998454 GACTCAGTGTCATTTCCATATGG 57.002 43.478 16.25 16.25 44.73 2.74
3795 3993 7.166167 CCTACAAATCACCTACTGGTAAGTTT 58.834 38.462 0.00 0.00 46.60 2.66
3803 4001 7.228590 TCACCTACTGGTAAGTTTGCTTAATT 58.771 34.615 0.00 0.00 46.60 1.40
3947 4471 9.508642 TTCAATGTACCAGTGTATGATAAAACA 57.491 29.630 0.00 0.00 31.07 2.83
3973 4500 4.220602 ACTTCTTGTTGGTTTTGCAGACTT 59.779 37.500 2.84 0.00 0.00 3.01
4058 4585 1.086067 ATCCTTGCGCGACAGATGTG 61.086 55.000 12.10 0.00 0.00 3.21
4110 4637 7.445121 AGATTCAACACACTCAGAGTATCAAA 58.555 34.615 1.67 0.00 37.82 2.69
4118 4645 6.205464 CACACTCAGAGTATCAAACCAACAAT 59.795 38.462 1.67 0.00 37.82 2.71
4137 4664 6.207691 ACAATGGTCCACTTAATGCATTAC 57.792 37.500 18.70 8.80 0.00 1.89
4360 4887 8.142994 ACGATGGCAAATATTAAACTCTACAG 57.857 34.615 0.00 0.00 0.00 2.74
4365 4892 8.405531 TGGCAAATATTAAACTCTACAGCAATC 58.594 33.333 0.00 0.00 0.00 2.67
4380 4907 4.768448 ACAGCAATCATCATTTTCAGGACA 59.232 37.500 0.00 0.00 0.00 4.02
4410 4938 3.439293 GACATGACGACGATGATGACTT 58.561 45.455 0.00 0.00 0.00 3.01
4451 4979 3.321111 TCTCCCGATTTTATCCCGAGAAG 59.679 47.826 0.00 0.00 31.04 2.85
4468 4996 5.220912 CCGAGAAGCATTATTCATGAAGCAA 60.221 40.000 14.54 10.57 34.31 3.91
4739 5274 5.947228 TGGAACAATCACAAGACAAGATC 57.053 39.130 0.00 0.00 31.92 2.75
4743 5278 6.016777 GGAACAATCACAAGACAAGATCTGTT 60.017 38.462 0.00 0.00 38.84 3.16
4747 5282 6.949352 ATCACAAGACAAGATCTGTTGTTT 57.051 33.333 0.00 0.00 40.83 2.83
4784 5319 6.000219 AGTTACATGAGACATGCAAACTTCT 59.000 36.000 18.51 0.00 29.67 2.85
4787 5322 5.766222 ACATGAGACATGCAAACTTCTTTC 58.234 37.500 0.00 0.00 0.00 2.62
4904 5449 2.762535 ACTGTATGTTCAAGGTCCCG 57.237 50.000 0.00 0.00 0.00 5.14
4971 5516 4.191033 CTCACTGAGCTCTTGACAATCT 57.809 45.455 16.19 0.00 0.00 2.40
4972 5517 5.321959 CTCACTGAGCTCTTGACAATCTA 57.678 43.478 16.19 0.00 0.00 1.98
5013 5558 6.816140 TGACTTGAAACAAATGTTCTTTTCCC 59.184 34.615 0.00 0.00 37.25 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 9.890629 TGTATCTAGAAAGTGTTAAAGATGCAT 57.109 29.630 0.00 0.00 33.19 3.96
150 151 9.890629 ATGTATCTAGAAAGTGTTAAAGATGCA 57.109 29.630 0.00 0.00 39.34 3.96
312 313 7.544566 TGTGTACGGAAAAAGCAAACATAAAAA 59.455 29.630 0.00 0.00 0.00 1.94
313 314 7.033791 TGTGTACGGAAAAAGCAAACATAAAA 58.966 30.769 0.00 0.00 0.00 1.52
314 315 6.561614 TGTGTACGGAAAAAGCAAACATAAA 58.438 32.000 0.00 0.00 0.00 1.40
315 316 6.132791 TGTGTACGGAAAAAGCAAACATAA 57.867 33.333 0.00 0.00 0.00 1.90
316 317 5.752892 TGTGTACGGAAAAAGCAAACATA 57.247 34.783 0.00 0.00 0.00 2.29
317 318 4.640789 TGTGTACGGAAAAAGCAAACAT 57.359 36.364 0.00 0.00 0.00 2.71
318 319 4.640789 ATGTGTACGGAAAAAGCAAACA 57.359 36.364 0.00 0.00 0.00 2.83
319 320 5.754778 ACTATGTGTACGGAAAAAGCAAAC 58.245 37.500 0.00 0.00 0.00 2.93
320 321 6.890558 GTACTATGTGTACGGAAAAAGCAAA 58.109 36.000 0.00 0.00 41.58 3.68
321 322 6.470557 GTACTATGTGTACGGAAAAAGCAA 57.529 37.500 0.00 0.00 41.58 3.91
425 426 9.594478 CCCACTGTTTTCTTTACTTTTGTTTAT 57.406 29.630 0.00 0.00 0.00 1.40
426 427 8.804204 TCCCACTGTTTTCTTTACTTTTGTTTA 58.196 29.630 0.00 0.00 0.00 2.01
427 428 7.672240 TCCCACTGTTTTCTTTACTTTTGTTT 58.328 30.769 0.00 0.00 0.00 2.83
456 457 2.919494 CGGCCCAAAAGCGCTCTTT 61.919 57.895 12.06 11.03 43.94 2.52
489 490 3.452786 CTCGGCCTCCTGAAGCGA 61.453 66.667 0.00 0.00 0.00 4.93
512 513 2.820479 TTTACGGGCCCGCGAATG 60.820 61.111 43.58 17.94 44.19 2.67
513 514 2.820922 GTTTACGGGCCCGCGAAT 60.821 61.111 43.58 26.90 44.19 3.34
520 521 2.045634 GGAGTGGGTTTACGGGCC 60.046 66.667 0.00 0.00 0.00 5.80
521 522 0.323087 AATGGAGTGGGTTTACGGGC 60.323 55.000 0.00 0.00 0.00 6.13
524 525 2.268298 CTCGAATGGAGTGGGTTTACG 58.732 52.381 0.00 0.00 38.02 3.18
551 552 9.448438 AAAGGCAGAATGTTTTCTTTACTTTTT 57.552 25.926 0.00 0.00 40.28 1.94
552 553 9.448438 AAAAGGCAGAATGTTTTCTTTACTTTT 57.552 25.926 11.79 11.79 40.28 2.27
553 554 8.882736 CAAAAGGCAGAATGTTTTCTTTACTTT 58.117 29.630 0.00 0.00 40.28 2.66
554 555 8.040727 ACAAAAGGCAGAATGTTTTCTTTACTT 58.959 29.630 0.00 0.00 40.28 2.24
555 556 7.555965 ACAAAAGGCAGAATGTTTTCTTTACT 58.444 30.769 0.00 0.00 40.28 2.24
556 557 7.770801 ACAAAAGGCAGAATGTTTTCTTTAC 57.229 32.000 0.00 0.00 40.28 2.01
557 558 7.494298 GGAACAAAAGGCAGAATGTTTTCTTTA 59.506 33.333 0.00 0.00 40.28 1.85
558 559 6.316140 GGAACAAAAGGCAGAATGTTTTCTTT 59.684 34.615 0.00 0.00 40.28 2.52
559 560 5.817296 GGAACAAAAGGCAGAATGTTTTCTT 59.183 36.000 0.00 0.00 40.28 2.52
560 561 5.104982 TGGAACAAAAGGCAGAATGTTTTCT 60.105 36.000 0.00 0.00 37.96 2.52
561 562 5.115480 TGGAACAAAAGGCAGAATGTTTTC 58.885 37.500 0.00 0.00 36.22 2.29
562 563 5.096443 TGGAACAAAAGGCAGAATGTTTT 57.904 34.783 0.00 0.00 36.22 2.43
579 580 1.324736 CGAGAAATGTAGCGCTGGAAC 59.675 52.381 22.90 11.48 0.00 3.62
714 715 0.932211 GTGTAGAGGGTAGGGAGGGA 59.068 60.000 0.00 0.00 0.00 4.20
723 724 2.352032 GGCGCAGAGTGTAGAGGGT 61.352 63.158 10.83 0.00 0.00 4.34
779 782 2.203640 TGCTCACCGTGGAGAGGT 60.204 61.111 14.03 0.00 43.97 3.85
817 820 4.156922 CGAATCTAATCTAGGGAGCGACAT 59.843 45.833 0.00 0.00 0.00 3.06
848 856 7.599630 ATCCAATCAAAACCAATTCAATTCG 57.400 32.000 0.00 0.00 0.00 3.34
866 874 2.114670 CACTCCGGCGCAATCCAAT 61.115 57.895 10.83 0.00 0.00 3.16
878 886 2.621338 TCTGCAGCTAAATTCACTCCG 58.379 47.619 9.47 0.00 0.00 4.63
895 903 1.857217 CAGCGAGACGAATCCAATCTG 59.143 52.381 0.00 0.00 0.00 2.90
906 914 0.302890 GGAAATGCATCAGCGAGACG 59.697 55.000 0.00 0.00 46.23 4.18
909 917 1.598132 CAGAGGAAATGCATCAGCGAG 59.402 52.381 0.00 0.00 46.23 5.03
928 945 4.262894 CCCTACCAAACTAAGAACAGAGCA 60.263 45.833 0.00 0.00 0.00 4.26
929 946 4.254492 CCCTACCAAACTAAGAACAGAGC 58.746 47.826 0.00 0.00 0.00 4.09
997 1014 0.462759 GCGTCCTTCCCTTCCATCTG 60.463 60.000 0.00 0.00 0.00 2.90
1027 1044 2.818714 CTTCAGCAGCTCCGGCAG 60.819 66.667 0.00 0.00 41.70 4.85
1152 1169 4.006357 GTACCGCCGGTCCCAACA 62.006 66.667 14.44 0.00 37.09 3.33
1463 1480 3.510360 GCTGAAGTTACTCCCACTGTCTA 59.490 47.826 0.00 0.00 0.00 2.59
1464 1481 2.300437 GCTGAAGTTACTCCCACTGTCT 59.700 50.000 0.00 0.00 0.00 3.41
1465 1482 2.037251 TGCTGAAGTTACTCCCACTGTC 59.963 50.000 0.00 0.00 0.00 3.51
1466 1483 2.037772 CTGCTGAAGTTACTCCCACTGT 59.962 50.000 0.00 0.00 0.00 3.55
1467 1484 2.037772 ACTGCTGAAGTTACTCCCACTG 59.962 50.000 0.00 0.00 34.57 3.66
1468 1485 2.330216 ACTGCTGAAGTTACTCCCACT 58.670 47.619 0.00 0.00 34.57 4.00
1469 1486 2.841442 ACTGCTGAAGTTACTCCCAC 57.159 50.000 0.00 0.00 34.57 4.61
1470 1487 3.644265 TGTTACTGCTGAAGTTACTCCCA 59.356 43.478 6.50 0.00 38.87 4.37
1471 1488 4.267349 TGTTACTGCTGAAGTTACTCCC 57.733 45.455 6.50 0.00 38.87 4.30
1472 1489 4.563184 CGATGTTACTGCTGAAGTTACTCC 59.437 45.833 6.50 0.00 38.87 3.85
1473 1490 5.399858 TCGATGTTACTGCTGAAGTTACTC 58.600 41.667 6.50 1.79 38.87 2.59
1474 1491 5.047943 ACTCGATGTTACTGCTGAAGTTACT 60.048 40.000 6.50 0.00 38.87 2.24
1475 1492 5.162075 ACTCGATGTTACTGCTGAAGTTAC 58.838 41.667 0.00 0.00 40.56 2.50
1476 1493 5.386958 ACTCGATGTTACTGCTGAAGTTA 57.613 39.130 0.00 0.00 40.56 2.24
1477 1494 4.238514 GACTCGATGTTACTGCTGAAGTT 58.761 43.478 0.00 0.00 40.56 2.66
1478 1495 3.367498 GGACTCGATGTTACTGCTGAAGT 60.367 47.826 0.00 0.00 43.40 3.01
1479 1496 3.182967 GGACTCGATGTTACTGCTGAAG 58.817 50.000 0.00 0.00 0.00 3.02
1480 1497 2.560981 TGGACTCGATGTTACTGCTGAA 59.439 45.455 0.00 0.00 0.00 3.02
1481 1498 2.167662 TGGACTCGATGTTACTGCTGA 58.832 47.619 0.00 0.00 0.00 4.26
1482 1499 2.654749 TGGACTCGATGTTACTGCTG 57.345 50.000 0.00 0.00 0.00 4.41
1483 1500 2.563179 AGTTGGACTCGATGTTACTGCT 59.437 45.455 0.00 0.00 0.00 4.24
1484 1501 2.960819 AGTTGGACTCGATGTTACTGC 58.039 47.619 0.00 0.00 0.00 4.40
1485 1502 5.924254 TGTTAAGTTGGACTCGATGTTACTG 59.076 40.000 0.00 0.00 0.00 2.74
1486 1503 6.092955 TGTTAAGTTGGACTCGATGTTACT 57.907 37.500 0.00 0.00 0.00 2.24
1487 1504 6.774354 TTGTTAAGTTGGACTCGATGTTAC 57.226 37.500 0.00 0.00 0.00 2.50
1488 1505 7.972832 ATTTGTTAAGTTGGACTCGATGTTA 57.027 32.000 0.00 0.00 0.00 2.41
1489 1506 6.877611 ATTTGTTAAGTTGGACTCGATGTT 57.122 33.333 0.00 0.00 0.00 2.71
1490 1507 6.877611 AATTTGTTAAGTTGGACTCGATGT 57.122 33.333 0.00 0.00 0.00 3.06
1491 1508 7.359595 TCAAATTTGTTAAGTTGGACTCGATG 58.640 34.615 17.47 0.00 39.23 3.84
1492 1509 7.504924 TCAAATTTGTTAAGTTGGACTCGAT 57.495 32.000 17.47 0.00 39.23 3.59
1493 1510 6.928979 TCAAATTTGTTAAGTTGGACTCGA 57.071 33.333 17.47 0.00 39.23 4.04
1494 1511 9.840427 ATAATCAAATTTGTTAAGTTGGACTCG 57.160 29.630 17.47 0.00 39.23 4.18
1498 1515 9.703892 CCACATAATCAAATTTGTTAAGTTGGA 57.296 29.630 17.47 0.00 39.23 3.53
1499 1516 8.442384 GCCACATAATCAAATTTGTTAAGTTGG 58.558 33.333 17.47 17.22 39.23 3.77
1500 1517 8.986847 TGCCACATAATCAAATTTGTTAAGTTG 58.013 29.630 17.47 13.50 39.90 3.16
1501 1518 9.553064 TTGCCACATAATCAAATTTGTTAAGTT 57.447 25.926 17.47 8.74 0.00 2.66
1502 1519 9.723601 ATTGCCACATAATCAAATTTGTTAAGT 57.276 25.926 17.47 14.02 0.00 2.24
1503 1520 9.976255 CATTGCCACATAATCAAATTTGTTAAG 57.024 29.630 17.47 13.51 0.00 1.85
1504 1521 9.716531 TCATTGCCACATAATCAAATTTGTTAA 57.283 25.926 17.47 5.03 0.00 2.01
1505 1522 9.368674 CTCATTGCCACATAATCAAATTTGTTA 57.631 29.630 17.47 14.51 0.00 2.41
1506 1523 7.879160 ACTCATTGCCACATAATCAAATTTGTT 59.121 29.630 17.47 13.00 0.00 2.83
1507 1524 7.388437 ACTCATTGCCACATAATCAAATTTGT 58.612 30.769 17.47 2.40 0.00 2.83
1508 1525 7.837202 ACTCATTGCCACATAATCAAATTTG 57.163 32.000 12.15 12.15 0.00 2.32
1509 1526 9.941325 TTAACTCATTGCCACATAATCAAATTT 57.059 25.926 0.00 0.00 0.00 1.82
1511 1528 9.537192 CATTAACTCATTGCCACATAATCAAAT 57.463 29.630 0.00 0.00 0.00 2.32
1512 1529 8.747471 TCATTAACTCATTGCCACATAATCAAA 58.253 29.630 0.00 0.00 0.00 2.69
1513 1530 8.291191 TCATTAACTCATTGCCACATAATCAA 57.709 30.769 0.00 0.00 0.00 2.57
1514 1531 7.878547 TCATTAACTCATTGCCACATAATCA 57.121 32.000 0.00 0.00 0.00 2.57
1515 1532 8.623903 TCTTCATTAACTCATTGCCACATAATC 58.376 33.333 0.00 0.00 0.00 1.75
1516 1533 8.523915 TCTTCATTAACTCATTGCCACATAAT 57.476 30.769 0.00 0.00 0.00 1.28
1517 1534 7.828717 TCTCTTCATTAACTCATTGCCACATAA 59.171 33.333 0.00 0.00 0.00 1.90
1518 1535 7.337938 TCTCTTCATTAACTCATTGCCACATA 58.662 34.615 0.00 0.00 0.00 2.29
1519 1536 6.182627 TCTCTTCATTAACTCATTGCCACAT 58.817 36.000 0.00 0.00 0.00 3.21
1520 1537 5.559770 TCTCTTCATTAACTCATTGCCACA 58.440 37.500 0.00 0.00 0.00 4.17
1521 1538 5.877012 TCTCTCTTCATTAACTCATTGCCAC 59.123 40.000 0.00 0.00 0.00 5.01
1522 1539 6.053632 TCTCTCTTCATTAACTCATTGCCA 57.946 37.500 0.00 0.00 0.00 4.92
1523 1540 5.526846 CCTCTCTCTTCATTAACTCATTGCC 59.473 44.000 0.00 0.00 0.00 4.52
1524 1541 6.112058 ACCTCTCTCTTCATTAACTCATTGC 58.888 40.000 0.00 0.00 0.00 3.56
1525 1542 8.474025 ACTACCTCTCTCTTCATTAACTCATTG 58.526 37.037 0.00 0.00 0.00 2.82
1526 1543 8.602472 ACTACCTCTCTCTTCATTAACTCATT 57.398 34.615 0.00 0.00 0.00 2.57
1527 1544 8.602472 AACTACCTCTCTCTTCATTAACTCAT 57.398 34.615 0.00 0.00 0.00 2.90
1528 1545 9.702253 ATAACTACCTCTCTCTTCATTAACTCA 57.298 33.333 0.00 0.00 0.00 3.41
1578 1595 6.508777 TCATATTGCATTGGAACATGTGATG 58.491 36.000 8.71 3.38 39.30 3.07
1579 1596 6.322969 ACTCATATTGCATTGGAACATGTGAT 59.677 34.615 15.21 1.38 39.30 3.06
1580 1597 5.653330 ACTCATATTGCATTGGAACATGTGA 59.347 36.000 15.21 5.01 39.30 3.58
1581 1598 5.898174 ACTCATATTGCATTGGAACATGTG 58.102 37.500 8.71 8.83 39.30 3.21
1582 1599 5.889853 AGACTCATATTGCATTGGAACATGT 59.110 36.000 8.71 0.00 39.30 3.21
1583 1600 6.387041 AGACTCATATTGCATTGGAACATG 57.613 37.500 3.03 3.03 39.30 3.21
1584 1601 9.797642 TTATAGACTCATATTGCATTGGAACAT 57.202 29.630 0.00 0.00 39.30 2.71
1585 1602 9.056005 GTTATAGACTCATATTGCATTGGAACA 57.944 33.333 0.00 0.00 0.00 3.18
1586 1603 8.507249 GGTTATAGACTCATATTGCATTGGAAC 58.493 37.037 0.00 0.00 0.00 3.62
1587 1604 8.439971 AGGTTATAGACTCATATTGCATTGGAA 58.560 33.333 0.00 0.00 0.00 3.53
1588 1605 7.977818 AGGTTATAGACTCATATTGCATTGGA 58.022 34.615 0.00 0.00 0.00 3.53
1589 1606 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
1616 1633 9.571810 GTGTGATAACATGCAAAGATTCATTTA 57.428 29.630 0.00 0.00 0.00 1.40
1617 1634 8.308931 AGTGTGATAACATGCAAAGATTCATTT 58.691 29.630 0.00 0.00 0.00 2.32
1618 1635 7.833786 AGTGTGATAACATGCAAAGATTCATT 58.166 30.769 0.00 0.00 0.00 2.57
1619 1636 7.400599 AGTGTGATAACATGCAAAGATTCAT 57.599 32.000 0.00 0.00 0.00 2.57
1620 1637 6.822667 AGTGTGATAACATGCAAAGATTCA 57.177 33.333 0.00 0.00 0.00 2.57
1621 1638 9.282247 CTTAAGTGTGATAACATGCAAAGATTC 57.718 33.333 0.00 0.00 0.00 2.52
1622 1639 8.796475 ACTTAAGTGTGATAACATGCAAAGATT 58.204 29.630 7.48 0.00 0.00 2.40
1623 1640 8.340618 ACTTAAGTGTGATAACATGCAAAGAT 57.659 30.769 7.48 0.00 0.00 2.40
1624 1641 7.744087 ACTTAAGTGTGATAACATGCAAAGA 57.256 32.000 7.48 0.00 0.00 2.52
1625 1642 9.329913 GTAACTTAAGTGTGATAACATGCAAAG 57.670 33.333 9.34 0.00 0.00 2.77
1626 1643 9.062524 AGTAACTTAAGTGTGATAACATGCAAA 57.937 29.630 9.34 0.00 0.00 3.68
1627 1644 8.615878 AGTAACTTAAGTGTGATAACATGCAA 57.384 30.769 9.34 0.00 0.00 4.08
1628 1645 9.146984 GTAGTAACTTAAGTGTGATAACATGCA 57.853 33.333 9.34 0.00 0.00 3.96
1629 1646 8.601476 GGTAGTAACTTAAGTGTGATAACATGC 58.399 37.037 9.34 0.00 0.00 4.06
1630 1647 9.095065 GGGTAGTAACTTAAGTGTGATAACATG 57.905 37.037 9.34 0.00 0.00 3.21
1631 1648 8.818860 TGGGTAGTAACTTAAGTGTGATAACAT 58.181 33.333 9.34 0.00 0.00 2.71
1632 1649 8.090214 GTGGGTAGTAACTTAAGTGTGATAACA 58.910 37.037 9.34 2.02 0.00 2.41
1633 1650 8.309656 AGTGGGTAGTAACTTAAGTGTGATAAC 58.690 37.037 9.34 3.21 0.00 1.89
1634 1651 8.426569 AGTGGGTAGTAACTTAAGTGTGATAA 57.573 34.615 9.34 0.00 0.00 1.75
1635 1652 9.705103 ATAGTGGGTAGTAACTTAAGTGTGATA 57.295 33.333 9.34 0.00 0.00 2.15
1636 1653 6.930068 AGTGGGTAGTAACTTAAGTGTGAT 57.070 37.500 9.34 0.00 0.00 3.06
1637 1654 7.670979 TCATAGTGGGTAGTAACTTAAGTGTGA 59.329 37.037 9.34 0.00 0.00 3.58
1638 1655 7.833786 TCATAGTGGGTAGTAACTTAAGTGTG 58.166 38.462 9.34 0.00 0.00 3.82
1639 1656 8.426569 TTCATAGTGGGTAGTAACTTAAGTGT 57.573 34.615 9.34 2.40 0.00 3.55
1640 1657 8.746530 TCTTCATAGTGGGTAGTAACTTAAGTG 58.253 37.037 9.34 0.00 0.00 3.16
1641 1658 8.890410 TCTTCATAGTGGGTAGTAACTTAAGT 57.110 34.615 1.12 1.12 0.00 2.24
1698 1715 8.978472 ACACAATGGATAGTAACATACACTAGT 58.022 33.333 0.00 0.00 32.24 2.57
1699 1716 9.464714 GACACAATGGATAGTAACATACACTAG 57.535 37.037 0.00 0.00 32.24 2.57
1700 1717 9.197306 AGACACAATGGATAGTAACATACACTA 57.803 33.333 0.00 0.00 33.22 2.74
1701 1718 8.079211 AGACACAATGGATAGTAACATACACT 57.921 34.615 0.00 0.00 0.00 3.55
1702 1719 8.604035 CAAGACACAATGGATAGTAACATACAC 58.396 37.037 0.00 0.00 0.00 2.90
1703 1720 8.318412 ACAAGACACAATGGATAGTAACATACA 58.682 33.333 0.00 0.00 0.00 2.29
1704 1721 8.718102 ACAAGACACAATGGATAGTAACATAC 57.282 34.615 0.00 0.00 0.00 2.39
1705 1722 8.758829 AGACAAGACACAATGGATAGTAACATA 58.241 33.333 0.00 0.00 0.00 2.29
1706 1723 7.624549 AGACAAGACACAATGGATAGTAACAT 58.375 34.615 0.00 0.00 0.00 2.71
1707 1724 7.004555 AGACAAGACACAATGGATAGTAACA 57.995 36.000 0.00 0.00 0.00 2.41
1708 1725 7.907214 AAGACAAGACACAATGGATAGTAAC 57.093 36.000 0.00 0.00 0.00 2.50
1709 1726 8.590204 TGTAAGACAAGACACAATGGATAGTAA 58.410 33.333 0.00 0.00 0.00 2.24
1710 1727 8.129496 TGTAAGACAAGACACAATGGATAGTA 57.871 34.615 0.00 0.00 0.00 1.82
1711 1728 7.004555 TGTAAGACAAGACACAATGGATAGT 57.995 36.000 0.00 0.00 0.00 2.12
1712 1729 7.466455 GCATGTAAGACAAGACACAATGGATAG 60.466 40.741 0.00 0.00 0.00 2.08
1713 1730 6.316140 GCATGTAAGACAAGACACAATGGATA 59.684 38.462 0.00 0.00 0.00 2.59
1714 1731 5.124457 GCATGTAAGACAAGACACAATGGAT 59.876 40.000 0.00 0.00 0.00 3.41
1715 1732 4.455533 GCATGTAAGACAAGACACAATGGA 59.544 41.667 0.00 0.00 0.00 3.41
1716 1733 4.456911 AGCATGTAAGACAAGACACAATGG 59.543 41.667 0.00 0.00 0.00 3.16
1717 1734 5.618056 AGCATGTAAGACAAGACACAATG 57.382 39.130 0.00 0.00 0.00 2.82
1718 1735 6.000219 AGAAGCATGTAAGACAAGACACAAT 59.000 36.000 0.00 0.00 0.00 2.71
1719 1736 5.368145 AGAAGCATGTAAGACAAGACACAA 58.632 37.500 0.00 0.00 0.00 3.33
1720 1737 4.960938 AGAAGCATGTAAGACAAGACACA 58.039 39.130 0.00 0.00 0.00 3.72
1721 1738 6.390721 TCTAGAAGCATGTAAGACAAGACAC 58.609 40.000 0.00 0.00 0.00 3.67
1722 1739 6.590234 TCTAGAAGCATGTAAGACAAGACA 57.410 37.500 0.00 0.00 0.00 3.41
1723 1740 6.416455 CGATCTAGAAGCATGTAAGACAAGAC 59.584 42.308 0.00 0.00 0.00 3.01
1724 1741 6.318900 TCGATCTAGAAGCATGTAAGACAAGA 59.681 38.462 0.00 0.00 0.00 3.02
1725 1742 6.499172 TCGATCTAGAAGCATGTAAGACAAG 58.501 40.000 0.00 0.00 0.00 3.16
1726 1743 6.451064 TCGATCTAGAAGCATGTAAGACAA 57.549 37.500 0.00 0.00 0.00 3.18
1727 1744 6.566753 CGATCGATCTAGAAGCATGTAAGACA 60.567 42.308 22.43 0.00 0.00 3.41
1728 1745 5.792962 CGATCGATCTAGAAGCATGTAAGAC 59.207 44.000 22.43 0.00 0.00 3.01
1729 1746 5.106515 CCGATCGATCTAGAAGCATGTAAGA 60.107 44.000 22.43 0.00 0.00 2.10
1730 1747 5.092105 CCGATCGATCTAGAAGCATGTAAG 58.908 45.833 22.43 2.42 0.00 2.34
1731 1748 4.082733 CCCGATCGATCTAGAAGCATGTAA 60.083 45.833 22.43 0.00 0.00 2.41
1755 1772 7.333921 AGAGAAGAGCAATAAATGAAGTGACTG 59.666 37.037 0.00 0.00 0.00 3.51
1796 1813 3.145286 TCAACCGAAGCAAATCATCACA 58.855 40.909 0.00 0.00 0.00 3.58
1799 1816 4.107622 CCAATCAACCGAAGCAAATCATC 58.892 43.478 0.00 0.00 0.00 2.92
1876 1893 7.574750 TGGGGGTATCTATTAGGAGAAAATGAA 59.425 37.037 0.00 0.00 0.00 2.57
1879 1896 7.184753 GGATGGGGGTATCTATTAGGAGAAAAT 59.815 40.741 0.00 0.00 0.00 1.82
1905 1922 8.477709 TGCAAAACCGTTTTATATTTTTGTACG 58.522 29.630 8.90 0.00 38.72 3.67
1910 1927 9.099454 TGAACTGCAAAACCGTTTTATATTTTT 57.901 25.926 8.90 0.00 0.00 1.94
1965 1982 7.672660 TCTCTCAAAAATACTACCTCTGTACCA 59.327 37.037 0.00 0.00 0.00 3.25
2005 2025 4.346127 ACCACTTTCTTACTTACTTCCCGT 59.654 41.667 0.00 0.00 0.00 5.28
2015 2039 7.661847 CCTCAGTTCAATAACCACTTTCTTACT 59.338 37.037 0.00 0.00 36.15 2.24
2016 2040 7.444487 ACCTCAGTTCAATAACCACTTTCTTAC 59.556 37.037 0.00 0.00 36.15 2.34
2017 2041 7.444183 CACCTCAGTTCAATAACCACTTTCTTA 59.556 37.037 0.00 0.00 36.15 2.10
2018 2042 6.263168 CACCTCAGTTCAATAACCACTTTCTT 59.737 38.462 0.00 0.00 36.15 2.52
2040 2064 1.202533 AGCATAGCACATACCGTCACC 60.203 52.381 0.00 0.00 0.00 4.02
2044 2068 3.323691 TGGATTAGCATAGCACATACCGT 59.676 43.478 0.00 0.00 0.00 4.83
2085 2109 3.781341 TTCAACAACGAATCACTACGC 57.219 42.857 0.00 0.00 0.00 4.42
2210 2366 8.725148 CCGAGGTAATCTTACGTGTTACTATAT 58.275 37.037 0.00 0.00 34.50 0.86
2211 2367 7.931407 TCCGAGGTAATCTTACGTGTTACTATA 59.069 37.037 0.00 0.00 34.50 1.31
2213 2369 6.112734 TCCGAGGTAATCTTACGTGTTACTA 58.887 40.000 0.00 0.00 34.50 1.82
2214 2370 4.943705 TCCGAGGTAATCTTACGTGTTACT 59.056 41.667 0.00 0.00 34.50 2.24
2215 2371 5.235305 TCCGAGGTAATCTTACGTGTTAC 57.765 43.478 0.00 2.57 34.50 2.50
2216 2372 5.589855 TCATCCGAGGTAATCTTACGTGTTA 59.410 40.000 0.00 0.00 34.50 2.41
2218 2374 3.949754 TCATCCGAGGTAATCTTACGTGT 59.050 43.478 0.00 0.00 34.50 4.49
2219 2375 4.563337 TCATCCGAGGTAATCTTACGTG 57.437 45.455 0.00 0.00 34.50 4.49
2220 2376 4.885907 TCTTCATCCGAGGTAATCTTACGT 59.114 41.667 0.00 0.00 34.50 3.57
2221 2377 5.434352 TCTTCATCCGAGGTAATCTTACG 57.566 43.478 0.00 0.00 34.50 3.18
2222 2378 9.194271 GTTATTCTTCATCCGAGGTAATCTTAC 57.806 37.037 0.00 0.00 0.00 2.34
2223 2379 8.920174 TGTTATTCTTCATCCGAGGTAATCTTA 58.080 33.333 0.00 0.00 0.00 2.10
2224 2380 7.711339 GTGTTATTCTTCATCCGAGGTAATCTT 59.289 37.037 0.00 0.00 0.00 2.40
2225 2381 7.070074 AGTGTTATTCTTCATCCGAGGTAATCT 59.930 37.037 0.00 0.00 0.00 2.40
2226 2382 7.210873 AGTGTTATTCTTCATCCGAGGTAATC 58.789 38.462 0.00 0.00 0.00 1.75
2227 2383 7.125792 AGTGTTATTCTTCATCCGAGGTAAT 57.874 36.000 0.00 0.00 0.00 1.89
2228 2384 6.540438 AGTGTTATTCTTCATCCGAGGTAA 57.460 37.500 0.00 0.00 0.00 2.85
2229 2385 6.540438 AAGTGTTATTCTTCATCCGAGGTA 57.460 37.500 0.00 0.00 0.00 3.08
2230 2386 5.422214 AAGTGTTATTCTTCATCCGAGGT 57.578 39.130 0.00 0.00 0.00 3.85
2231 2387 8.077836 GAATAAGTGTTATTCTTCATCCGAGG 57.922 38.462 10.78 0.00 45.06 4.63
2243 2399 5.815581 TCAGGGTGCAGAATAAGTGTTATT 58.184 37.500 0.00 0.00 38.49 1.40
2244 2400 5.435686 TCAGGGTGCAGAATAAGTGTTAT 57.564 39.130 0.00 0.00 0.00 1.89
2245 2401 4.901197 TCAGGGTGCAGAATAAGTGTTA 57.099 40.909 0.00 0.00 0.00 2.41
2246 2402 3.788227 TCAGGGTGCAGAATAAGTGTT 57.212 42.857 0.00 0.00 0.00 3.32
2247 2403 3.788227 TTCAGGGTGCAGAATAAGTGT 57.212 42.857 0.00 0.00 0.00 3.55
2791 2947 8.614346 CATTAAGGGAAATTAAACAATGCATGG 58.386 33.333 0.00 0.00 0.00 3.66
3211 3385 8.659527 AGGGAATCTTGAATTGTAAAATTTGGT 58.340 29.630 0.00 0.00 0.00 3.67
3321 3495 7.279758 CCTCCTCAGTCTCATTAGAAAATTGTC 59.720 40.741 0.00 0.00 32.16 3.18
3445 3619 5.782893 TTTTAATGGGCAATATCTTCCCG 57.217 39.130 0.00 0.00 42.98 5.14
3492 3669 3.897141 TGGTGCTTGTATCATAACCGA 57.103 42.857 0.00 0.00 0.00 4.69
3526 3703 4.103153 ACCTGTTCAGGAAGAGTTGATGAA 59.897 41.667 23.45 0.00 30.52 2.57
3527 3704 3.648067 ACCTGTTCAGGAAGAGTTGATGA 59.352 43.478 23.45 0.00 30.52 2.92
3592 3769 7.922811 GGATCAGTGTTTTGAGAAGTGAAATTT 59.077 33.333 0.00 0.00 0.00 1.82
3594 3771 6.293626 CGGATCAGTGTTTTGAGAAGTGAAAT 60.294 38.462 0.00 0.00 0.00 2.17
3655 3849 3.983741 AGTCAAACTCTCCTTCGAACTG 58.016 45.455 0.00 0.00 0.00 3.16
3695 3892 4.204799 AGAGGGCGGAATAAAATGGTAAC 58.795 43.478 0.00 0.00 0.00 2.50
3820 4018 9.855021 AAAAATAGGCTATGTTGTGTTTGATAC 57.145 29.630 10.66 0.00 0.00 2.24
3826 4024 9.908152 GAACTTAAAAATAGGCTATGTTGTGTT 57.092 29.630 10.66 14.11 0.00 3.32
3828 4026 7.218204 GCGAACTTAAAAATAGGCTATGTTGTG 59.782 37.037 10.66 6.82 0.00 3.33
3947 4471 6.096846 AGTCTGCAAAACCAACAAGAAGTTAT 59.903 34.615 0.00 0.00 38.74 1.89
3951 4475 4.376340 AGTCTGCAAAACCAACAAGAAG 57.624 40.909 0.00 0.00 0.00 2.85
3952 4476 4.493547 CAAGTCTGCAAAACCAACAAGAA 58.506 39.130 0.00 0.00 0.00 2.52
3953 4477 3.119173 CCAAGTCTGCAAAACCAACAAGA 60.119 43.478 0.00 0.00 0.00 3.02
3973 4500 5.015515 TGTTGTCCATGAAAATAGCATCCA 58.984 37.500 0.00 0.00 0.00 3.41
4058 4585 4.863491 TCAAAAATCTTGCTTCTGCTGAC 58.137 39.130 0.00 0.00 40.48 3.51
4118 4645 7.068103 CCATAAAGTAATGCATTAAGTGGACCA 59.932 37.037 20.46 0.00 0.00 4.02
4360 4887 5.472148 TGTTGTCCTGAAAATGATGATTGC 58.528 37.500 0.00 0.00 0.00 3.56
4365 4892 5.393787 CCCAGATGTTGTCCTGAAAATGATG 60.394 44.000 0.00 0.00 32.37 3.07
4374 4901 2.026915 TCATGTCCCAGATGTTGTCCTG 60.027 50.000 0.00 0.00 0.00 3.86
4380 4907 1.404181 CGTCGTCATGTCCCAGATGTT 60.404 52.381 0.00 0.00 0.00 2.71
4410 4938 4.402793 GGAGACTAGGACTGCATAAACTGA 59.597 45.833 0.00 0.00 0.00 3.41
4489 5019 9.179552 CATAAAACATTCTCAATTCAACGACAA 57.820 29.630 0.00 0.00 0.00 3.18
4491 5021 8.629986 CACATAAAACATTCTCAATTCAACGAC 58.370 33.333 0.00 0.00 0.00 4.34
4492 5022 8.563732 TCACATAAAACATTCTCAATTCAACGA 58.436 29.630 0.00 0.00 0.00 3.85
4493 5023 8.726650 TCACATAAAACATTCTCAATTCAACG 57.273 30.769 0.00 0.00 0.00 4.10
4571 5106 6.434028 AGCAATCAATTAACACTAAGGAGCAA 59.566 34.615 0.00 0.00 0.00 3.91
4574 5109 9.132521 CAAAAGCAATCAATTAACACTAAGGAG 57.867 33.333 0.00 0.00 0.00 3.69
4614 5149 7.062605 CAGAGATGGAACCATTTTTCATTTTCG 59.937 37.037 7.79 0.00 36.70 3.46
4625 5160 4.647564 ACAGTTCAGAGATGGAACCATT 57.352 40.909 7.79 0.00 44.40 3.16
4904 5449 6.699575 ATTTGGTGAGCTCAATTATGTACC 57.300 37.500 20.19 13.25 0.00 3.34
5013 5558 6.496571 CAAGAAGGACTATACGGTTAGACAG 58.503 44.000 1.41 0.00 0.00 3.51
5139 5684 8.564574 TGCGGTAAAATCCTATGCTAAATAAAG 58.435 33.333 0.00 0.00 0.00 1.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.