Multiple sequence alignment - TraesCS7A01G377000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G377000 chr7A 100.000 4007 0 0 1 4007 550296574 550300580 0.000000e+00 7400.0
1 TraesCS7A01G377000 chr7A 73.512 521 107 19 121 614 38792815 38792299 6.890000e-38 169.0
2 TraesCS7A01G377000 chr7D 94.551 3597 150 27 439 4007 483917713 483921291 0.000000e+00 5515.0
3 TraesCS7A01G377000 chr7D 84.286 140 7 5 2250 2378 46087831 46087696 5.440000e-24 122.0
4 TraesCS7A01G377000 chr7B 90.363 4047 240 58 1 4004 509562636 509566575 0.000000e+00 5175.0
5 TraesCS7A01G377000 chr2D 77.100 607 108 20 48 627 354988199 354988801 5.000000e-84 322.0
6 TraesCS7A01G377000 chr3D 88.298 188 17 4 2139 2323 435640254 435640069 1.870000e-53 220.0
7 TraesCS7A01G377000 chr3A 82.870 216 32 5 429 641 552020753 552020540 5.290000e-44 189.0
8 TraesCS7A01G377000 chr6A 77.778 324 55 11 1621 1940 208118088 208118398 2.460000e-42 183.0
9 TraesCS7A01G377000 chr6A 76.349 241 46 10 434 668 75164012 75163777 7.030000e-23 119.0
10 TraesCS7A01G377000 chr6D 76.852 324 58 11 1621 1940 154596876 154596566 2.480000e-37 167.0
11 TraesCS7A01G377000 chr6B 77.199 307 53 11 1638 1940 278127440 278127733 3.200000e-36 163.0
12 TraesCS7A01G377000 chr6B 75.393 191 45 2 444 633 132490822 132491011 1.530000e-14 91.6
13 TraesCS7A01G377000 chr6B 76.667 120 19 8 501 616 659257004 659257118 1.560000e-04 58.4
14 TraesCS7A01G377000 chr1A 75.920 299 62 8 48 338 579845315 579845611 1.160000e-30 145.0
15 TraesCS7A01G377000 chr1D 83.571 140 8 5 2250 2378 42092818 42092683 2.530000e-22 117.0
16 TraesCS7A01G377000 chr2B 100.000 28 0 0 568 595 555852552 555852579 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G377000 chr7A 550296574 550300580 4006 False 7400 7400 100.000 1 4007 1 chr7A.!!$F1 4006
1 TraesCS7A01G377000 chr7D 483917713 483921291 3578 False 5515 5515 94.551 439 4007 1 chr7D.!!$F1 3568
2 TraesCS7A01G377000 chr7B 509562636 509566575 3939 False 5175 5175 90.363 1 4004 1 chr7B.!!$F1 4003
3 TraesCS7A01G377000 chr2D 354988199 354988801 602 False 322 322 77.100 48 627 1 chr2D.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 370 0.253327 CTTGGGGTGGAGAGGTTAGC 59.747 60.0 0.00 0.0 0.0 3.09 F
413 437 0.944386 GCAAGAGTTCAAAGGCGACA 59.056 50.0 0.00 0.0 0.0 4.35 F
1978 2030 0.034767 CAGTCTGTGTCCCATGGCAT 60.035 55.0 6.09 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1380 0.107017 ATGGATTCAAGGACCGCCTG 60.107 55.0 0.00 0.00 46.28 4.85 R
2353 2407 0.110688 CACCGTGTCACGATGCAAAG 60.111 55.0 26.53 10.19 46.05 2.77 R
3965 4050 1.086067 ATCCTTGCGCGACAGATGTG 61.086 55.0 12.10 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.793259 TTTATGAAACTACACTCTCATTTCCTT 57.207 29.630 0.00 0.00 31.20 3.36
86 87 1.064017 CCATAGGTGGCTAGGGCAAAA 60.064 52.381 0.00 0.00 40.46 2.44
123 124 3.006940 TCATCGGCGAGCTTGTAAATTT 58.993 40.909 17.22 0.00 0.00 1.82
137 138 2.299326 AAATTTGCCTCCACTCTGCT 57.701 45.000 0.00 0.00 0.00 4.24
184 186 2.045340 AAATCCCGGTGCCTTCGG 60.045 61.111 0.00 2.96 46.43 4.30
234 236 4.988716 TCCTGCGGGTCCGACACT 62.989 66.667 12.43 0.00 42.83 3.55
250 253 4.147449 CTCGGACAGATGGCGGCA 62.147 66.667 16.34 16.34 0.00 5.69
253 256 2.537560 CGGACAGATGGCGGCATTC 61.538 63.158 26.52 18.70 0.00 2.67
260 263 1.106285 GATGGCGGCATTCCTTCTTT 58.894 50.000 26.52 0.00 0.00 2.52
273 276 6.238869 GCATTCCTTCTTTGAGTTTGTCTTCT 60.239 38.462 0.00 0.00 0.00 2.85
345 358 1.768870 CCGACATAGATTCCTTGGGGT 59.231 52.381 0.00 0.00 0.00 4.95
357 370 0.253327 CTTGGGGTGGAGAGGTTAGC 59.747 60.000 0.00 0.00 0.00 3.09
392 416 4.693283 TGGTATTAGGTGCTTCGATTCTG 58.307 43.478 0.00 0.00 0.00 3.02
413 437 0.944386 GCAAGAGTTCAAAGGCGACA 59.056 50.000 0.00 0.00 0.00 4.35
414 438 1.334149 GCAAGAGTTCAAAGGCGACAC 60.334 52.381 0.00 0.00 0.00 3.67
428 452 1.238439 CGACACCTGTGCTCCAAAAT 58.762 50.000 0.00 0.00 0.00 1.82
442 467 4.335416 CTCCAAAATGCTGGTCCTTAAGA 58.665 43.478 3.36 0.00 37.74 2.10
491 516 3.056328 GACAAGGTCAAGCGGGCC 61.056 66.667 0.00 0.00 32.09 5.80
492 517 3.553095 GACAAGGTCAAGCGGGCCT 62.553 63.158 0.84 0.00 32.09 5.19
494 519 4.035102 AAGGTCAAGCGGGCCTCC 62.035 66.667 0.84 0.00 0.00 4.30
537 562 4.415332 GTCGGCGGCTCGTTCTGA 62.415 66.667 3.23 0.00 0.00 3.27
561 587 1.487558 AGTAGTGGTTGTTCGGTGGTT 59.512 47.619 0.00 0.00 0.00 3.67
617 643 6.942532 AGATGCTTTGTACTTTCAGTGAAA 57.057 33.333 17.16 17.16 0.00 2.69
748 785 4.741676 CGGACCACTGGTATTTACGTATTC 59.258 45.833 0.00 0.00 35.25 1.75
787 825 3.814945 CAACGTTTGCTCTTGAATCCTC 58.185 45.455 0.00 0.00 0.00 3.71
1121 1163 1.138036 CGTAACCTGATGCGACGGA 59.862 57.895 0.00 0.00 0.00 4.69
1174 1216 3.640407 GCTGTGCTCCCACCTGGA 61.640 66.667 0.00 0.00 41.35 3.86
1237 1281 2.258286 GTTCCATGTGCAACCGCC 59.742 61.111 0.00 0.00 37.32 6.13
1293 1337 2.347292 GCATAAATAGACACGGTTCGCG 60.347 50.000 0.00 0.00 0.00 5.87
1318 1362 5.163953 CGCTCTATAAACATTTAGATGCCGG 60.164 44.000 0.00 0.00 36.72 6.13
1321 1365 2.939460 AAACATTTAGATGCCGGTGC 57.061 45.000 1.90 0.00 36.72 5.01
1360 1404 1.933853 CGGTCCTTGAATCCATCGTTC 59.066 52.381 0.00 0.00 0.00 3.95
1373 1425 2.563179 CCATCGTTCCCATAGTAGGAGG 59.437 54.545 0.00 0.00 34.08 4.30
1504 1556 7.899973 ACCAAAATGCTCTGTCTTATGATTTT 58.100 30.769 0.00 0.00 0.00 1.82
1513 1565 5.045651 TCTGTCTTATGATTTTCTGAGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
1539 1591 0.238289 GATGGTTGTTGTGCAGTCCG 59.762 55.000 0.00 0.00 0.00 4.79
1560 1612 4.461405 CGATGTCAAAAGCTGTCAAGAAG 58.539 43.478 0.00 0.00 0.00 2.85
1612 1664 3.255395 TGGTTGTTATGCCACATGACTTG 59.745 43.478 0.00 0.00 0.00 3.16
1645 1697 4.277258 TCGAATACGTGAAGCTAATCGTC 58.723 43.478 11.97 0.00 40.69 4.20
1721 1773 1.202533 TGCTAAGCCTGCTCCGATAAC 60.203 52.381 0.00 0.00 0.00 1.89
1767 1819 3.468326 GAGGATCCAAGGCCGCTCC 62.468 68.421 15.82 0.17 0.00 4.70
1768 1820 3.797353 GGATCCAAGGCCGCTCCA 61.797 66.667 6.95 0.00 37.29 3.86
1864 1916 3.682155 GCAGAGGAGCATGTCTTCAATCT 60.682 47.826 0.00 0.00 33.59 2.40
1943 1995 7.515957 ACGAGTTTGTAAATCAAGGTATACG 57.484 36.000 0.00 0.00 37.35 3.06
1961 2013 1.224075 CGGCATGCACCTAAGATCAG 58.776 55.000 21.36 0.00 0.00 2.90
1969 2021 3.056536 TGCACCTAAGATCAGTCTGTGTC 60.057 47.826 0.00 0.16 34.13 3.67
1978 2030 0.034767 CAGTCTGTGTCCCATGGCAT 60.035 55.000 6.09 0.00 0.00 4.40
2140 2192 3.338249 TCATTCAGAGTTTGTAGCAGCC 58.662 45.455 0.00 0.00 0.00 4.85
2155 2207 1.069227 GCAGCCGTAGTTTTGGACTTG 60.069 52.381 0.00 0.00 39.86 3.16
2173 2225 1.937278 TGTGTGCAAAACCATGCTTG 58.063 45.000 0.00 0.00 46.54 4.01
2326 2380 5.618640 GCATCTGAACTAACAAAAGCCTCTG 60.619 44.000 0.00 0.00 0.00 3.35
2350 2404 9.985318 CTGCTGTCTTATTCTATCTTTCTTTTG 57.015 33.333 0.00 0.00 0.00 2.44
2369 2424 1.260297 TGTTCTTTGCATCGTGACACG 59.740 47.619 21.88 21.88 44.19 4.49
2410 2465 8.408601 TGAAAAATTCTAATTATCAGGCTCAGC 58.591 33.333 0.00 0.00 0.00 4.26
2430 2485 2.159787 GCACTTCTGTAGCATGTTCACG 60.160 50.000 0.00 0.00 0.00 4.35
2445 2500 2.438868 TCACGTGTCACCAGATTGAG 57.561 50.000 16.51 0.00 0.00 3.02
2599 2663 5.514834 CCCAAGAACCAAAGATAAGGTGAGA 60.515 44.000 0.00 0.00 38.37 3.27
2637 2701 9.733556 ACTGTTGTACCTGAAATACATGAAATA 57.266 29.630 0.00 0.00 32.70 1.40
2678 2744 9.927668 TCTTTGAACCAAAAGAATCCAAATATC 57.072 29.630 0.00 0.00 41.92 1.63
2725 2791 4.229582 TCCTTTTGCATATGGAACTAGGGT 59.770 41.667 24.91 0.00 32.17 4.34
2742 2811 6.708285 ACTAGGGTACTTTGTTTCAGTATGG 58.292 40.000 0.00 0.00 36.16 2.74
2884 2953 8.564574 TGCGGTAAAATCCTATGCTAAATAAAG 58.435 33.333 0.00 0.00 0.00 1.85
3010 3079 6.496571 CAAGAAGGACTATACGGTTAGACAG 58.503 44.000 1.41 0.00 0.00 3.51
3119 3188 6.699575 ATTTGGTGAGCTCAATTATGTACC 57.300 37.500 20.19 13.25 0.00 3.34
3398 3477 4.647564 ACAGTTCAGAGATGGAACCATT 57.352 40.909 7.79 0.00 44.40 3.16
3409 3488 7.062605 CAGAGATGGAACCATTTTTCATTTTCG 59.937 37.037 7.79 0.00 36.70 3.46
3449 3528 9.132521 CAAAAGCAATCAATTAACACTAAGGAG 57.867 33.333 0.00 0.00 0.00 3.69
3452 3531 6.434028 AGCAATCAATTAACACTAAGGAGCAA 59.566 34.615 0.00 0.00 0.00 3.91
3530 3614 8.726650 TCACATAAAACATTCTCAATTCAACG 57.273 30.769 0.00 0.00 0.00 4.10
3613 3697 4.402793 GGAGACTAGGACTGCATAAACTGA 59.597 45.833 0.00 0.00 0.00 3.41
3643 3728 1.404181 CGTCGTCATGTCCCAGATGTT 60.404 52.381 0.00 0.00 0.00 2.71
3649 3734 2.026915 TCATGTCCCAGATGTTGTCCTG 60.027 50.000 0.00 0.00 0.00 3.86
3658 3743 5.393787 CCCAGATGTTGTCCTGAAAATGATG 60.394 44.000 0.00 0.00 32.37 3.07
3663 3748 5.472148 TGTTGTCCTGAAAATGATGATTGC 58.528 37.500 0.00 0.00 0.00 3.56
3905 3990 7.068103 CCATAAAGTAATGCATTAAGTGGACCA 59.932 37.037 20.46 0.00 0.00 4.02
3965 4050 4.863491 TCAAAAATCTTGCTTCTGCTGAC 58.137 39.130 0.00 0.00 40.48 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 3.763897 CCGATGAAGTTTGGAGGGAAAAT 59.236 43.478 0.00 0.00 0.00 1.82
98 99 0.320771 ACAAGCTCGCCGATGAAGTT 60.321 50.000 0.00 0.00 0.00 2.66
123 124 2.033141 GCAAGCAGAGTGGAGGCA 59.967 61.111 0.00 0.00 0.00 4.75
181 183 4.666512 ACCTAAACTACTAACCAGACCGA 58.333 43.478 0.00 0.00 0.00 4.69
184 186 6.154192 AGCCTAACCTAAACTACTAACCAGAC 59.846 42.308 0.00 0.00 0.00 3.51
234 236 2.923426 GAATGCCGCCATCTGTCCGA 62.923 60.000 0.00 0.00 0.00 4.55
240 243 0.257039 AAGAAGGAATGCCGCCATCT 59.743 50.000 0.00 0.00 39.96 2.90
250 253 7.201857 CCAAGAAGACAAACTCAAAGAAGGAAT 60.202 37.037 0.00 0.00 0.00 3.01
253 256 5.221126 CCCAAGAAGACAAACTCAAAGAAGG 60.221 44.000 0.00 0.00 0.00 3.46
260 263 3.117888 AGAAGCCCAAGAAGACAAACTCA 60.118 43.478 0.00 0.00 0.00 3.41
273 276 1.414158 CGAGGAGGATAGAAGCCCAA 58.586 55.000 0.00 0.00 0.00 4.12
305 308 2.403987 CTCTGGCGACTACGTCCG 59.596 66.667 0.00 0.00 43.97 4.79
317 320 2.029470 GGAATCTATGTCGGAGCTCTGG 60.029 54.545 22.38 10.62 0.00 3.86
319 322 3.237268 AGGAATCTATGTCGGAGCTCT 57.763 47.619 14.64 0.00 0.00 4.09
345 358 1.201647 CGAGAAACGCTAACCTCTCCA 59.798 52.381 0.00 0.00 32.35 3.86
392 416 0.944386 TCGCCTTTGAACTCTTGCAC 59.056 50.000 0.00 0.00 0.00 4.57
413 437 0.963962 CAGCATTTTGGAGCACAGGT 59.036 50.000 0.00 0.00 0.00 4.00
414 438 0.245539 CCAGCATTTTGGAGCACAGG 59.754 55.000 0.00 0.00 40.87 4.00
416 440 0.961019 GACCAGCATTTTGGAGCACA 59.039 50.000 0.00 0.00 40.87 4.57
428 452 0.037326 CGTGCTCTTAAGGACCAGCA 60.037 55.000 11.44 11.44 40.52 4.41
442 467 0.512952 GAAATCTTCGTGCACGTGCT 59.487 50.000 37.59 19.67 42.66 4.40
494 519 2.032860 CTGTCACCGCTCCCCTATGG 62.033 65.000 0.00 0.00 0.00 2.74
495 520 1.443407 CTGTCACCGCTCCCCTATG 59.557 63.158 0.00 0.00 0.00 2.23
496 521 2.435693 GCTGTCACCGCTCCCCTAT 61.436 63.158 0.00 0.00 0.00 2.57
537 562 0.599204 CCGAACAACCACTACTGCGT 60.599 55.000 0.00 0.00 0.00 5.24
540 565 1.202604 ACCACCGAACAACCACTACTG 60.203 52.381 0.00 0.00 0.00 2.74
748 785 7.406799 AACGTTGCTTGGATTTTCTTAAATG 57.593 32.000 0.00 0.00 34.16 2.32
778 816 5.104109 AGGGGAATACAAATCGAGGATTCAA 60.104 40.000 9.57 0.00 30.29 2.69
787 825 4.335594 GGAGAAACAGGGGAATACAAATCG 59.664 45.833 0.00 0.00 0.00 3.34
1121 1163 2.227089 AAACCCGATCGAGCTCGCTT 62.227 55.000 30.97 20.26 39.60 4.68
1164 1206 0.988145 CCTATTGGCTCCAGGTGGGA 60.988 60.000 0.00 0.00 45.89 4.37
1168 1210 3.392616 CACTAATCCTATTGGCTCCAGGT 59.607 47.826 0.00 0.00 0.00 4.00
1169 1211 3.244700 CCACTAATCCTATTGGCTCCAGG 60.245 52.174 0.00 0.00 0.00 4.45
1171 1213 3.664320 TCCACTAATCCTATTGGCTCCA 58.336 45.455 0.00 0.00 29.78 3.86
1172 1214 4.583871 CATCCACTAATCCTATTGGCTCC 58.416 47.826 0.00 0.00 29.78 4.70
1174 1216 3.557898 CGCATCCACTAATCCTATTGGCT 60.558 47.826 0.00 0.00 29.78 4.75
1237 1281 0.523072 CAGAACCGGGAAACAGCATG 59.477 55.000 6.32 0.00 46.00 4.06
1293 1337 5.622378 GGCATCTAAATGTTTATAGAGCGC 58.378 41.667 0.00 0.00 35.18 5.92
1336 1380 0.107017 ATGGATTCAAGGACCGCCTG 60.107 55.000 0.00 0.00 46.28 4.85
1360 1404 1.343069 GGAGCACCTCCTACTATGGG 58.657 60.000 4.04 0.00 46.41 4.00
1504 1556 1.144298 CCATCATTCCATGGGCTCAGA 59.856 52.381 13.02 3.88 39.95 3.27
1513 1565 2.898612 TGCACAACAACCATCATTCCAT 59.101 40.909 0.00 0.00 0.00 3.41
1522 1574 0.179032 ATCGGACTGCACAACAACCA 60.179 50.000 0.00 0.00 0.00 3.67
1539 1591 4.225208 GCTTCTTGACAGCTTTTGACATC 58.775 43.478 0.00 0.00 34.15 3.06
1612 1664 3.617706 TCACGTATTCGAGAGTCTGAGAC 59.382 47.826 3.98 3.98 40.62 3.36
1645 1697 3.569701 AGCAAAACAGTATTGACCAGTGG 59.430 43.478 7.91 7.91 0.00 4.00
1721 1773 1.880340 GAAGGCTCATCGACCGCTG 60.880 63.158 0.00 0.00 0.00 5.18
1809 1861 0.466372 TGTTTCCAATCCCGTGTGCA 60.466 50.000 0.00 0.00 0.00 4.57
1864 1916 2.817834 GGATTGCGGCGCTGTACA 60.818 61.111 33.26 9.45 0.00 2.90
1943 1995 2.158842 AGACTGATCTTAGGTGCATGCC 60.159 50.000 16.68 6.42 0.00 4.40
2123 2175 0.679505 ACGGCTGCTACAAACTCTGA 59.320 50.000 0.00 0.00 0.00 3.27
2140 2192 2.353269 TGCACACAAGTCCAAAACTACG 59.647 45.455 0.00 0.00 37.17 3.51
2155 2207 0.582960 GCAAGCATGGTTTTGCACAC 59.417 50.000 15.00 0.00 46.72 3.82
2173 2225 2.095059 CCCAGTGTGCAGAAGTAAATGC 60.095 50.000 0.00 0.00 42.86 3.56
2273 2327 5.819379 TCATCTCATGCCAACTATTCTTGAC 59.181 40.000 0.00 0.00 0.00 3.18
2274 2328 5.993055 TCATCTCATGCCAACTATTCTTGA 58.007 37.500 0.00 0.00 0.00 3.02
2341 2395 5.743398 TCACGATGCAAAGAACAAAAGAAAG 59.257 36.000 0.00 0.00 0.00 2.62
2350 2404 1.398451 CCGTGTCACGATGCAAAGAAC 60.398 52.381 26.53 0.00 46.05 3.01
2353 2407 0.110688 CACCGTGTCACGATGCAAAG 60.111 55.000 26.53 10.19 46.05 2.77
2356 2410 1.013524 CATCACCGTGTCACGATGCA 61.014 55.000 26.53 10.32 46.05 3.96
2357 2411 1.709760 CATCACCGTGTCACGATGC 59.290 57.895 26.53 0.00 46.05 3.91
2358 2412 1.013524 TGCATCACCGTGTCACGATG 61.014 55.000 26.53 20.49 46.05 3.84
2359 2413 0.320334 TTGCATCACCGTGTCACGAT 60.320 50.000 26.53 6.70 46.05 3.73
2360 2414 0.943835 CTTGCATCACCGTGTCACGA 60.944 55.000 26.53 7.35 46.05 4.35
2369 2424 8.538409 AGAATTTTTCAATAACTTGCATCACC 57.462 30.769 0.00 0.00 32.11 4.02
2410 2465 3.059884 ACGTGAACATGCTACAGAAGTG 58.940 45.455 0.00 0.00 0.00 3.16
2430 2485 2.012673 GGCATCTCAATCTGGTGACAC 58.987 52.381 0.00 0.00 35.60 3.67
2553 2617 4.024048 GGTCTTTTCAAGTCGAGATTTGCA 60.024 41.667 3.82 0.00 0.00 4.08
2574 2638 4.105697 TCACCTTATCTTTGGTTCTTGGGT 59.894 41.667 0.00 0.00 33.75 4.51
2578 2642 9.401058 CAATATCTCACCTTATCTTTGGTTCTT 57.599 33.333 0.00 0.00 33.75 2.52
2652 2716 9.927668 GATATTTGGATTCTTTTGGTTCAAAGA 57.072 29.630 0.00 0.00 34.72 2.52
2653 2717 9.709495 TGATATTTGGATTCTTTTGGTTCAAAG 57.291 29.630 0.00 0.00 34.72 2.77
2725 2791 8.514330 AACTTTCACCATACTGAAACAAAGTA 57.486 30.769 0.00 0.00 35.63 2.24
2760 2829 7.890127 TCAACAGAAATATCAAAGGTGGAGAAT 59.110 33.333 0.00 0.00 0.00 2.40
3010 3079 6.816140 TGACTTGAAACAAATGTTCTTTTCCC 59.184 34.615 0.00 0.00 37.25 3.97
3051 3120 5.321959 CTCACTGAGCTCTTGACAATCTA 57.678 43.478 16.19 0.00 0.00 1.98
3052 3121 4.191033 CTCACTGAGCTCTTGACAATCT 57.809 45.455 16.19 0.00 0.00 2.40
3119 3188 2.762535 ACTGTATGTTCAAGGTCCCG 57.237 50.000 0.00 0.00 0.00 5.14
3236 3315 5.766222 ACATGAGACATGCAAACTTCTTTC 58.234 37.500 0.00 0.00 0.00 2.62
3239 3318 6.000219 AGTTACATGAGACATGCAAACTTCT 59.000 36.000 18.51 0.00 29.67 2.85
3276 3355 6.949352 ATCACAAGACAAGATCTGTTGTTT 57.051 33.333 0.00 0.00 40.83 2.83
3280 3359 6.016777 GGAACAATCACAAGACAAGATCTGTT 60.017 38.462 0.00 0.00 38.84 3.16
3284 3363 5.947228 TGGAACAATCACAAGACAAGATC 57.053 39.130 0.00 0.00 31.92 2.75
3555 3639 5.220912 CCGAGAAGCATTATTCATGAAGCAA 60.221 40.000 14.54 10.57 34.31 3.91
3572 3656 3.321111 TCTCCCGATTTTATCCCGAGAAG 59.679 47.826 0.00 0.00 31.04 2.85
3613 3697 3.439293 GACATGACGACGATGATGACTT 58.561 45.455 0.00 0.00 0.00 3.01
3643 3728 4.768448 ACAGCAATCATCATTTTCAGGACA 59.232 37.500 0.00 0.00 0.00 4.02
3658 3743 8.405531 TGGCAAATATTAAACTCTACAGCAATC 58.594 33.333 0.00 0.00 0.00 2.67
3663 3748 8.142994 ACGATGGCAAATATTAAACTCTACAG 57.857 34.615 0.00 0.00 0.00 2.74
3886 3971 6.207691 ACAATGGTCCACTTAATGCATTAC 57.792 37.500 18.70 8.80 0.00 1.89
3905 3990 6.205464 CACACTCAGAGTATCAAACCAACAAT 59.795 38.462 1.67 0.00 37.82 2.71
3913 3998 7.445121 AGATTCAACACACTCAGAGTATCAAA 58.555 34.615 1.67 0.00 37.82 2.69
3965 4050 1.086067 ATCCTTGCGCGACAGATGTG 61.086 55.000 12.10 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.