AutoCloner

Multiple sequence alignment - TraesCS7A01G376100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G376100	chr7A	100.000	3086	0	0	1	3086	549020018	549016933	0.000000e+00	5699
1	TraesCS7A01G376100	chr7A	97.665	985	22	1	2102	3086	65572951	65571968	0.000000e+00	1690
2	TraesCS7A01G376100	chr7A	89.927	953	74	9	1114	2059	549011824	549010887	0.000000e+00	1208
3	TraesCS7A01G376100	chr7A	93.015	544	36	2	36	578	549099894	549099352	0.000000e+00	793
4	TraesCS7A01G376100	chr1A	97.563	985	24	0	2102	3086	535411280	535410296	0.000000e+00	1687
5	TraesCS7A01G376100	chr2A	97.360	985	26	0	2102	3086	673995251	673994267	0.000000e+00	1676
6	TraesCS7A01G376100	chr2A	93.889	540	28	3	39	578	410549717	410550251	0.000000e+00	809
7	TraesCS7A01G376100	chr2A	90.641	577	53	1	1	577	462329684	462329109	0.000000e+00	765
8	TraesCS7A01G376100	chr2A	74.407	801	160	36	2102	2880	57898754	57899531	5.000000e-78	302
9	TraesCS7A01G376100	chr2A	82.547	212	28	7	768	975	17123767	17123561	8.790000e-41	178
10	TraesCS7A01G376100	chr3A	96.960	987	23	2	2102	3086	718370262	718369281	0.000000e+00	1650
11	TraesCS7A01G376100	chr3A	79.000	800	154	8	2101	2897	608091520	608092308	4.530000e-148	534
12	TraesCS7A01G376100	chr7B	91.645	1137	67	15	952	2081	507946101	507944986	0.000000e+00	1548
13	TraesCS7A01G376100	chr7B	89.158	950	84	7	1122	2059	507850458	507849516	0.000000e+00	1166
14	TraesCS7A01G376100	chr7B	78.636	880	144	31	2100	2967	693681459	693680612	7.530000e-151	544
15	TraesCS7A01G376100	chr7B	86.288	299	34	4	585	881	507946759	507946466	4.970000e-83	318
16	TraesCS7A01G376100	chr4B	94.929	986	41	2	2103	3086	428700479	428701457	0.000000e+00	1535
17	TraesCS7A01G376100	chr7D	88.581	1191	86	17	579	1744	481848702	481847537	0.000000e+00	1400
18	TraesCS7A01G376100	chr7D	89.910	892	76	8	1122	2000	481844991	481844101	0.000000e+00	1136
19	TraesCS7A01G376100	chr3D	91.003	578	50	2	1	577	235273836	235273260	0.000000e+00	778
20	TraesCS7A01G376100	chr3D	90.484	578	51	3	1	578	183283165	183282592	0.000000e+00	760
21	TraesCS7A01G376100	chr3D	78.852	610	121	5	2274	2882	380279095	380278493	3.710000e-109	405
22	TraesCS7A01G376100	chr6D	90.815	577	51	2	1	577	94791431	94790857	0.000000e+00	771
23	TraesCS7A01G376100	chr6D	80.485	784	126	17	2102	2881	15169673	15170433	2.670000e-160	575
24	TraesCS7A01G376100	chr5D	90.674	579	50	4	1	577	70041700	70041124	0.000000e+00	767
25	TraesCS7A01G376100	chr2D	90.517	580	49	6	1	577	291124734	291125310	0.000000e+00	761
26	TraesCS7A01G376100	chr4D	90.484	578	52	3	1	577	117433963	117433388	0.000000e+00	760
27	TraesCS7A01G376100	chr5A	81.486	794	120	18	2098	2881	524225311	524226087	7.260000e-176	627
28	TraesCS7A01G376100	chr5A	78.055	802	160	10	2100	2897	234432211	234433000	2.760000e-135	492
29	TraesCS7A01G376100	chrUn	79.091	880	140	31	2100	2967	344773533	344774380	1.610000e-157	566
30	TraesCS7A01G376100	chrUn	74.407	801	160	36	2102	2880	313446970	313446193	5.000000e-78	302
31	TraesCS7A01G376100	chrUn	80.882	136	24	2	2100	2234	364811046	364811180	4.210000e-19	106
32	TraesCS7A01G376100	chr3B	76.633	796	161	14	2091	2882	47612348	47613122	1.710000e-112	416

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G376100	chr7A	549016933	549020018	3085	True	5699	5699	100.0000	1	3086	1	chr7A.!!$R3	3085
1	TraesCS7A01G376100	chr7A	65571968	65572951	983	True	1690	1690	97.6650	2102	3086	1	chr7A.!!$R1	984
2	TraesCS7A01G376100	chr7A	549010887	549011824	937	True	1208	1208	89.9270	1114	2059	1	chr7A.!!$R2	945
3	TraesCS7A01G376100	chr7A	549099352	549099894	542	True	793	793	93.0150	36	578	1	chr7A.!!$R4	542
4	TraesCS7A01G376100	chr1A	535410296	535411280	984	True	1687	1687	97.5630	2102	3086	1	chr1A.!!$R1	984
5	TraesCS7A01G376100	chr2A	673994267	673995251	984	True	1676	1676	97.3600	2102	3086	1	chr2A.!!$R3	984
6	TraesCS7A01G376100	chr2A	410549717	410550251	534	False	809	809	93.8890	39	578	1	chr2A.!!$F2	539
7	TraesCS7A01G376100	chr2A	462329109	462329684	575	True	765	765	90.6410	1	577	1	chr2A.!!$R2	576
8	TraesCS7A01G376100	chr2A	57898754	57899531	777	False	302	302	74.4070	2102	2880	1	chr2A.!!$F1	778
9	TraesCS7A01G376100	chr3A	718369281	718370262	981	True	1650	1650	96.9600	2102	3086	1	chr3A.!!$R1	984
10	TraesCS7A01G376100	chr3A	608091520	608092308	788	False	534	534	79.0000	2101	2897	1	chr3A.!!$F1	796
11	TraesCS7A01G376100	chr7B	507849516	507850458	942	True	1166	1166	89.1580	1122	2059	1	chr7B.!!$R1	937
12	TraesCS7A01G376100	chr7B	507944986	507946759	1773	True	933	1548	88.9665	585	2081	2	chr7B.!!$R3	1496
13	TraesCS7A01G376100	chr7B	693680612	693681459	847	True	544	544	78.6360	2100	2967	1	chr7B.!!$R2	867
14	TraesCS7A01G376100	chr4B	428700479	428701457	978	False	1535	1535	94.9290	2103	3086	1	chr4B.!!$F1	983
15	TraesCS7A01G376100	chr7D	481844101	481848702	4601	True	1268	1400	89.2455	579	2000	2	chr7D.!!$R1	1421
16	TraesCS7A01G376100	chr3D	235273260	235273836	576	True	778	778	91.0030	1	577	1	chr3D.!!$R2	576
17	TraesCS7A01G376100	chr3D	183282592	183283165	573	True	760	760	90.4840	1	578	1	chr3D.!!$R1	577
18	TraesCS7A01G376100	chr3D	380278493	380279095	602	True	405	405	78.8520	2274	2882	1	chr3D.!!$R3	608
19	TraesCS7A01G376100	chr6D	94790857	94791431	574	True	771	771	90.8150	1	577	1	chr6D.!!$R1	576
20	TraesCS7A01G376100	chr6D	15169673	15170433	760	False	575	575	80.4850	2102	2881	1	chr6D.!!$F1	779
21	TraesCS7A01G376100	chr5D	70041124	70041700	576	True	767	767	90.6740	1	577	1	chr5D.!!$R1	576
22	TraesCS7A01G376100	chr2D	291124734	291125310	576	False	761	761	90.5170	1	577	1	chr2D.!!$F1	576
23	TraesCS7A01G376100	chr4D	117433388	117433963	575	True	760	760	90.4840	1	577	1	chr4D.!!$R1	576
24	TraesCS7A01G376100	chr5A	524225311	524226087	776	False	627	627	81.4860	2098	2881	1	chr5A.!!$F2	783
25	TraesCS7A01G376100	chr5A	234432211	234433000	789	False	492	492	78.0550	2100	2897	1	chr5A.!!$F1	797
26	TraesCS7A01G376100	chrUn	344773533	344774380	847	False	566	566	79.0910	2100	2967	1	chrUn.!!$F1	867
27	TraesCS7A01G376100	chrUn	313446193	313446970	777	True	302	302	74.4070	2102	2880	1	chrUn.!!$R1	778
28	TraesCS7A01G376100	chr3B	47612348	47613122	774	False	416	416	76.6330	2091	2882	1	chr3B.!!$F1	791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
848	872	0.168788	ACGCGATGATGGCAACTTTG	59.831	50.0	15.93	0.0	37.61	2.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2085	5611	0.322546	GTCCGCCTCCTTGGTTCAAT	60.323	55.0	0.0	0.0	38.35	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	2.063266	GCGTCAACTGTCGTGGAATTA	58.937	47.619	0.00	0.00	0.00	1.40
107	108	2.618241	GGAGCCATTGCGATGTGATTAA	59.382	45.455	13.01	0.00	44.33	1.40
124	126	8.763984	TGTGATTAACTTAAAGGGGTTAAACA	57.236	30.769	0.00	0.00	40.00	2.83
180	182	1.957877	CCCTTGCGGTGAAGGTAAAAA	59.042	47.619	0.00	0.00	41.02	1.94
181	183	2.030274	CCCTTGCGGTGAAGGTAAAAAG	60.030	50.000	0.00	0.00	41.02	2.27
347	350	3.626924	GTCCCGGCCGGCTCATAT	61.627	66.667	39.46	0.00	0.00	1.78
359	363	1.137513	GCTCATATAACCGTGTCCGC	58.862	55.000	0.00	0.00	0.00	5.54
437	441	1.557832	ACTTATGGACCTTAAGCCGCA	59.442	47.619	21.45	0.00	31.22	5.69
478	483	1.276622	AGGCCTACTTCATGAACCGT	58.723	50.000	1.29	4.79	0.00	4.83
488	493	5.248640	ACTTCATGAACCGTCATCTTCAAT	58.751	37.500	3.38	0.00	42.88	2.57
517	522	2.642311	TGGGCTTTGTCTAGATGAACCA	59.358	45.455	0.00	0.00	0.00	3.67
564	569	2.039879	GGGCGGGTCATATCCAATAGTT	59.960	50.000	0.00	0.00	0.00	2.24
572	577	7.070696	CGGGTCATATCCAATAGTTATATCCCA	59.929	40.741	0.00	0.00	30.47	4.37
583	588	5.917541	AGTTATATCCCAAACATAACGCG	57.082	39.130	3.53	3.53	39.19	6.01
633	638	8.664798	TCCACAAACTTAGATGAAATGAATACG	58.335	33.333	0.00	0.00	0.00	3.06
692	698	3.797256	CGGTCCTCTTATGTTTTAGCTCG	59.203	47.826	0.00	0.00	0.00	5.03
717	723	3.260632	AGGTTTTTGGCAACCCATGTATC	59.739	43.478	0.00	0.00	46.76	2.24
718	724	3.249917	GTTTTTGGCAACCCATGTATCG	58.750	45.455	0.00	0.00	41.78	2.92
778	801	8.458573	AAAAGAACCATAATAAGTGTCACACA	57.541	30.769	11.40	0.00	36.74	3.72
786	810	2.708216	AAGTGTCACACATGTGGACA	57.292	45.000	30.23	30.23	45.65	4.02
806	830	5.471456	GGACAAACACATGAGAACTCTGAAT	59.529	40.000	0.00	0.00	0.00	2.57
807	831	6.016777	GGACAAACACATGAGAACTCTGAATT	60.017	38.462	0.00	0.00	0.00	2.17
835	859	1.227380	GCAAGATCAGGGACGCGAT	60.227	57.895	15.93	0.00	0.00	4.58
848	872	0.168788	ACGCGATGATGGCAACTTTG	59.831	50.000	15.93	0.00	37.61	2.77
859	883	4.902443	TGGCAACTTTGTTTTCGTATGA	57.098	36.364	0.00	0.00	37.61	2.15
872	897	8.829514	TGTTTTCGTATGACAAGTTTAGTTTG	57.170	30.769	0.00	0.00	0.00	2.93
882	907	8.973835	TGACAAGTTTAGTTTGTTTAGGTTTG	57.026	30.769	0.00	0.00	38.78	2.93
883	908	7.542824	TGACAAGTTTAGTTTGTTTAGGTTTGC	59.457	33.333	0.00	0.00	38.78	3.68
884	909	7.608153	ACAAGTTTAGTTTGTTTAGGTTTGCT	58.392	30.769	0.00	0.00	35.32	3.91
911	936	5.607119	TCTTTTCGGATGACAACTTTAGC	57.393	39.130	0.00	0.00	0.00	3.09
939	964	5.695851	AAAAACGTCAGAATCAGATTGCT	57.304	34.783	0.00	0.00	0.00	3.91
940	965	4.935885	AAACGTCAGAATCAGATTGCTC	57.064	40.909	0.00	0.00	0.00	4.26
941	966	2.898705	ACGTCAGAATCAGATTGCTCC	58.101	47.619	0.00	0.00	0.00	4.70
942	967	1.857217	CGTCAGAATCAGATTGCTCCG	59.143	52.381	0.00	0.00	0.00	4.63
945	971	1.329906	CAGAATCAGATTGCTCCGTGC	59.670	52.381	0.00	0.00	43.25	5.34
948	974	0.182061	ATCAGATTGCTCCGTGCCAT	59.818	50.000	0.00	0.00	42.00	4.40
1034	1355	4.156008	GGAAAATGCTCTTTTCGGAAGCTA	59.844	41.667	14.66	0.00	38.82	3.32
1035	1356	5.335661	GGAAAATGCTCTTTTCGGAAGCTAA	60.336	40.000	14.66	0.00	38.82	3.09
1162	1483	3.439857	TTTCATCTCCTCCAAACCCAG	57.560	47.619	0.00	0.00	0.00	4.45
1262	1591	2.280524	CAACCGGACGTCAAGCCA	60.281	61.111	18.91	0.00	0.00	4.75
1263	1592	1.890041	CAACCGGACGTCAAGCCAA	60.890	57.895	18.91	0.00	0.00	4.52
1264	1593	1.153127	AACCGGACGTCAAGCCAAA	60.153	52.632	18.91	0.00	0.00	3.28
1280	1609	2.917933	CCAAACATATCTCCGGCTTCA	58.082	47.619	0.00	0.00	0.00	3.02
1292	1621	0.878416	CGGCTTCAAAATCCACCGAA	59.122	50.000	0.00	0.00	43.19	4.30
1441	1783	3.394836	GAGCCAGGACCTCCGCTT	61.395	66.667	12.83	0.00	42.08	4.68
1617	1959	3.248446	TACCACAACGGCCAGCTCC	62.248	63.158	2.24	0.00	39.03	4.70
1754	5280	2.420138	ATCGACCAGATCAGGGACG	58.580	57.895	17.52	17.52	43.30	4.79
1894	5420	1.171308	GCATGATGGATGGGATTCCG	58.829	55.000	0.00	0.00	38.74	4.30
1945	5471	3.151906	CCGGATGGGGTCATCTCC	58.848	66.667	0.00	0.00	46.70	3.71
2059	5585	4.724074	TTGGTGGATCGTCGTTAGTATT	57.276	40.909	0.00	0.00	0.00	1.89
2060	5586	5.833406	TTGGTGGATCGTCGTTAGTATTA	57.167	39.130	0.00	0.00	0.00	0.98
2061	5587	5.428496	TGGTGGATCGTCGTTAGTATTAG	57.572	43.478	0.00	0.00	0.00	1.73
2066	5592	5.470098	TGGATCGTCGTTAGTATTAGTACCC	59.530	44.000	0.00	0.00	0.00	3.69
2067	5593	5.703130	GGATCGTCGTTAGTATTAGTACCCT	59.297	44.000	0.00	0.00	0.00	4.34
2072	5598	6.688813	CGTCGTTAGTATTAGTACCCTGTTTC	59.311	42.308	0.00	0.00	0.00	2.78
2150	5676	3.371097	GAGCTCGGAATCACGCCCA	62.371	63.158	0.00	0.00	0.00	5.36
2217	5746	2.852180	CGGGTCCATGCCGACGATA	61.852	63.158	4.40	0.00	33.30	2.92
2542	6082	2.353803	GCGACCATGGAGTTCTTACTGT	60.354	50.000	21.47	0.00	33.84	3.55
2548	6088	2.522185	TGGAGTTCTTACTGTAGCCGT	58.478	47.619	0.00	0.00	33.84	5.68
2637	6183	6.085555	TGATCTAGATTCCGTCGCTTAAAT	57.914	37.500	6.70	0.00	0.00	1.40
2938	6489	2.098614	TGCAAATGTGTGTGTCCTGTT	58.901	42.857	0.00	0.00	0.00	3.16
2945	6496	7.279981	GCAAATGTGTGTGTCCTGTTAGATATA	59.720	37.037	0.00	0.00	0.00	0.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	1.323271	ACGAGGACATCTGCCGTGAT	61.323	55.000	0.00	0.00	31.85	3.06
107	108	5.391577	TGTCCTGTTTAACCCCTTTAAGT	57.608	39.130	0.00	0.00	31.11	2.24
124	126	0.969894	CTCCTCGTGTCCTTTGTCCT	59.030	55.000	0.00	0.00	0.00	3.85
180	182	2.644798	ACCACCTCAAACTGGATTAGCT	59.355	45.455	0.00	0.00	0.00	3.32
181	183	3.073274	ACCACCTCAAACTGGATTAGC	57.927	47.619	0.00	0.00	0.00	3.09
291	294	4.041198	ACGTCAACCCATGTATATAAGGGG	59.959	45.833	13.63	10.01	45.83	4.79
359	363	3.728845	CATGTAAGATAAGTCACCGGGG	58.271	50.000	6.32	0.00	0.00	5.73
437	441	2.312424	TAAAGGGCCCAAACCGAAAT	57.688	45.000	27.56	0.00	0.00	2.17
478	483	6.692849	AGCCCATGAGTATATTGAAGATGA	57.307	37.500	0.00	0.00	0.00	2.92
488	493	6.782494	TCATCTAGACAAAGCCCATGAGTATA	59.218	38.462	0.00	0.00	0.00	1.47
564	569	4.946445	TGACGCGTTATGTTTGGGATATA	58.054	39.130	15.53	0.00	0.00	0.86
572	577	7.298507	ACTAACATATTGACGCGTTATGTTT	57.701	32.000	34.57	23.28	41.43	2.83
583	588	7.649306	GGATGCATTTGGAACTAACATATTGAC	59.351	37.037	0.00	0.00	0.00	3.18
640	645	8.814038	AAGCAGTGATCCTAACTTTTAATCAT	57.186	30.769	0.00	0.00	0.00	2.45
654	659	2.418976	GGACCGTAAAAAGCAGTGATCC	59.581	50.000	0.00	0.00	0.00	3.36
657	662	2.367567	AGAGGACCGTAAAAAGCAGTGA	59.632	45.455	0.00	0.00	0.00	3.41
662	667	5.874895	AACATAAGAGGACCGTAAAAAGC	57.125	39.130	0.00	0.00	0.00	3.51
670	676	3.797256	CGAGCTAAAACATAAGAGGACCG	59.203	47.826	0.00	0.00	0.00	4.79
817	841	1.227380	ATCGCGTCCCTGATCTTGC	60.227	57.895	5.77	0.00	0.00	4.01
820	844	0.316522	CATCATCGCGTCCCTGATCT	59.683	55.000	5.77	0.00	0.00	2.75
821	845	0.668706	CCATCATCGCGTCCCTGATC	60.669	60.000	5.77	0.00	0.00	2.92
822	846	1.368950	CCATCATCGCGTCCCTGAT	59.631	57.895	5.77	8.11	0.00	2.90
824	848	2.969238	GCCATCATCGCGTCCCTG	60.969	66.667	5.77	0.00	0.00	4.45
827	851	1.369091	AAGTTGCCATCATCGCGTCC	61.369	55.000	5.77	0.00	0.00	4.79
835	859	3.791973	ACGAAAACAAAGTTGCCATCA	57.208	38.095	0.00	0.00	0.00	3.07
848	872	8.831000	ACAAACTAAACTTGTCATACGAAAAC	57.169	30.769	0.00	0.00	31.29	2.43
859	883	7.608153	AGCAAACCTAAACAAACTAAACTTGT	58.392	30.769	0.00	0.00	38.65	3.16
922	947	1.857217	CGGAGCAATCTGATTCTGACG	59.143	52.381	0.00	0.40	0.00	4.35
923	948	2.606725	CACGGAGCAATCTGATTCTGAC	59.393	50.000	0.00	0.00	0.00	3.51
924	949	2.897436	CACGGAGCAATCTGATTCTGA	58.103	47.619	0.00	0.00	0.00	3.27
925	950	1.329906	GCACGGAGCAATCTGATTCTG	59.670	52.381	0.00	0.00	44.79	3.02
926	951	1.661341	GCACGGAGCAATCTGATTCT	58.339	50.000	0.00	1.39	44.79	2.40
937	962	1.439353	CCACACATATGGCACGGAGC	61.439	60.000	7.80	0.00	44.65	4.70
938	963	2.694065	CCACACATATGGCACGGAG	58.306	57.895	7.80	0.00	31.52	4.63
939	964	4.952704	CCACACATATGGCACGGA	57.047	55.556	7.80	0.00	31.52	4.69
945	971	6.039605	TCAAATGATAAGTGCCACACATATGG	59.960	38.462	7.80	0.00	43.26	2.74
948	974	6.413892	TCTCAAATGATAAGTGCCACACATA	58.586	36.000	0.00	0.00	36.74	2.29
981	1300	8.487313	TTCTTATGCGTAAATGTGTGAATACT	57.513	30.769	0.00	0.00	0.00	2.12
982	1301	9.716507	ATTTCTTATGCGTAAATGTGTGAATAC	57.283	29.630	0.00	0.00	0.00	1.89
1262	1591	5.067805	GGATTTTGAAGCCGGAGATATGTTT	59.932	40.000	5.05	0.00	0.00	2.83
1263	1592	4.580580	GGATTTTGAAGCCGGAGATATGTT	59.419	41.667	5.05	0.00	0.00	2.71
1264	1593	4.137543	GGATTTTGAAGCCGGAGATATGT	58.862	43.478	5.05	0.00	0.00	2.29
1280	1609	1.304962	GGGGGCTTCGGTGGATTTT	60.305	57.895	0.00	0.00	0.00	1.82
1441	1783	2.310233	GCAGTCAGCTTCAACGCGA	61.310	57.895	15.93	0.00	41.15	5.87
1460	1802	0.823356	TGAGCTTGTTGAGGGTTGGC	60.823	55.000	0.00	0.00	0.00	4.52
1754	5280	2.821366	CGCCATGGTCTGCAGGAC	60.821	66.667	15.13	10.60	43.79	3.85
1882	5408	2.591715	CCGCACGGAATCCCATCC	60.592	66.667	2.01	0.00	37.50	3.51
2017	5543	1.818060	TCCATCCCAGCAAAATTCACG	59.182	47.619	0.00	0.00	0.00	4.35
2025	5551	0.324552	CCACCAATCCATCCCAGCAA	60.325	55.000	0.00	0.00	0.00	3.91
2081	5607	2.823154	CCGCCTCCTTGGTTCAATTTAA	59.177	45.455	0.00	0.00	38.35	1.52
2082	5608	2.040545	TCCGCCTCCTTGGTTCAATTTA	59.959	45.455	0.00	0.00	38.35	1.40
2083	5609	1.203001	TCCGCCTCCTTGGTTCAATTT	60.203	47.619	0.00	0.00	38.35	1.82
2084	5610	0.404040	TCCGCCTCCTTGGTTCAATT	59.596	50.000	0.00	0.00	38.35	2.32
2085	5611	0.322546	GTCCGCCTCCTTGGTTCAAT	60.323	55.000	0.00	0.00	38.35	2.57
2086	5612	1.072505	GTCCGCCTCCTTGGTTCAA	59.927	57.895	0.00	0.00	38.35	2.69
2087	5613	2.747686	GTCCGCCTCCTTGGTTCA	59.252	61.111	0.00	0.00	38.35	3.18
2088	5614	2.434359	CGTCCGCCTCCTTGGTTC	60.434	66.667	0.00	0.00	38.35	3.62
2089	5615	4.699522	GCGTCCGCCTCCTTGGTT	62.700	66.667	0.00	0.00	38.35	3.67
2150	5676	4.302455	CGAATCTCGTAGCAATTCTGGAT	58.698	43.478	0.00	0.00	34.72	3.41
2217	5746	9.216117	GTATTGTGCCGTATATCCTAATTTTCT	57.784	33.333	0.00	0.00	0.00	2.52
2542	6082	1.698532	TCCCAACCTGTTTAACGGCTA	59.301	47.619	0.00	0.00	0.00	3.93
2548	6088	3.806949	AGCAGATCCCAACCTGTTTAA	57.193	42.857	0.00	0.00	33.19	1.52
2600	6142	7.420214	GGAATCTAGATCAGTACCCAAAATCCA	60.420	40.741	5.51	0.00	0.00	3.41
2637	6183	6.263617	AGCGTTCTACTTAATCAACCCAAAAA	59.736	34.615	0.00	0.00	0.00	1.94
2945	6496	5.413833	CCTCATTTCATCAGTTACTGCTTGT	59.586	40.000	7.61	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.