Multiple sequence alignment - TraesCS7A01G375900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G375900 chr7A 100.000 2624 0 0 1 2624 549002981 549000358 0.000000e+00 4846
1 TraesCS7A01G375900 chr7B 88.069 1911 90 54 552 2376 507837147 507835289 0.000000e+00 2139
2 TraesCS7A01G375900 chr7B 88.060 201 13 9 2401 2598 507835108 507834916 7.310000e-56 228
3 TraesCS7A01G375900 chr7B 90.076 131 10 2 429 557 507837331 507837202 1.620000e-37 167
4 TraesCS7A01G375900 chr7B 90.090 111 8 3 2437 2545 651153705 651153596 9.790000e-30 141
5 TraesCS7A01G375900 chr7B 93.023 86 3 3 265 348 61967445 61967361 3.550000e-24 122
6 TraesCS7A01G375900 chr7D 90.184 1681 69 36 540 2147 481838245 481836588 0.000000e+00 2102
7 TraesCS7A01G375900 chr7D 89.524 210 12 6 2403 2608 481836004 481835801 9.320000e-65 257
8 TraesCS7A01G375900 chr7D 94.898 98 2 3 2437 2533 583409523 583409428 1.630000e-32 150
9 TraesCS7A01G375900 chr7D 94.000 100 3 3 2435 2533 583594904 583594807 5.850000e-32 148
10 TraesCS7A01G375900 chr6B 94.000 100 5 1 2436 2534 720559457 720559358 1.630000e-32 150
11 TraesCS7A01G375900 chr3D 94.000 100 4 2 2437 2535 90781702 90781604 1.630000e-32 150
12 TraesCS7A01G375900 chr6A 95.699 93 3 1 2435 2527 615433930 615434021 5.850000e-32 148
13 TraesCS7A01G375900 chr6A 91.579 95 3 5 257 347 462268613 462268520 2.740000e-25 126
14 TraesCS7A01G375900 chr3B 93.939 99 4 2 2438 2535 140401452 140401355 5.850000e-32 148
15 TraesCS7A01G375900 chr1B 94.186 86 4 1 265 349 356906934 356907019 2.120000e-26 130
16 TraesCS7A01G375900 chr5B 94.118 85 4 1 265 348 69131967 69131883 7.620000e-26 128
17 TraesCS7A01G375900 chr5B 93.023 86 3 3 265 348 510229646 510229562 3.550000e-24 122
18 TraesCS7A01G375900 chr2D 94.118 85 4 1 265 348 524566909 524566825 7.620000e-26 128
19 TraesCS7A01G375900 chr1D 95.122 82 3 1 265 345 341552860 341552941 7.620000e-26 128
20 TraesCS7A01G375900 chr4D 91.209 91 6 2 256 345 462654199 462654110 3.550000e-24 122
21 TraesCS7A01G375900 chr4B 89.216 102 6 5 265 363 626008878 626008977 3.550000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G375900 chr7A 549000358 549002981 2623 True 4846.000000 4846 100.000 1 2624 1 chr7A.!!$R1 2623
1 TraesCS7A01G375900 chr7B 507834916 507837331 2415 True 844.666667 2139 88.735 429 2598 3 chr7B.!!$R3 2169
2 TraesCS7A01G375900 chr7D 481835801 481838245 2444 True 1179.500000 2102 89.854 540 2608 2 chr7D.!!$R3 2068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 350 0.179054 GGGACGGAGGGAGTATTTGC 60.179 60.0 0.0 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1834 0.101219 TGATCATCTCGTGTGAGGCG 59.899 55.0 0.0 0.0 42.79 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.267045 GTGCTGGACACCCAAATCC 58.733 57.895 0.00 0.00 44.02 3.01
25 26 1.076549 TGCTGGACACCCAAATCCC 59.923 57.895 0.00 0.00 42.98 3.85
26 27 1.682344 GCTGGACACCCAAATCCCC 60.682 63.158 0.00 0.00 42.98 4.81
27 28 2.087248 CTGGACACCCAAATCCCCT 58.913 57.895 0.00 0.00 42.98 4.79
28 29 0.409484 CTGGACACCCAAATCCCCTT 59.591 55.000 0.00 0.00 42.98 3.95
29 30 0.863956 TGGACACCCAAATCCCCTTT 59.136 50.000 0.00 0.00 40.09 3.11
30 31 1.221781 TGGACACCCAAATCCCCTTTT 59.778 47.619 0.00 0.00 40.09 2.27
31 32 2.334977 GGACACCCAAATCCCCTTTTT 58.665 47.619 0.00 0.00 0.00 1.94
56 57 6.985653 TTAGGAACTCCTCTGATTCATAGG 57.014 41.667 11.02 11.02 44.77 2.57
57 58 5.149584 AGGAACTCCTCTGATTCATAGGA 57.850 43.478 17.23 17.23 44.77 2.94
58 59 5.725490 AGGAACTCCTCTGATTCATAGGAT 58.275 41.667 18.21 7.40 44.77 3.24
59 60 6.868826 AGGAACTCCTCTGATTCATAGGATA 58.131 40.000 18.21 1.37 44.77 2.59
60 61 6.953520 AGGAACTCCTCTGATTCATAGGATAG 59.046 42.308 18.21 11.73 44.77 2.08
61 62 6.154363 GGAACTCCTCTGATTCATAGGATAGG 59.846 46.154 18.21 11.16 36.42 2.57
62 63 5.588845 ACTCCTCTGATTCATAGGATAGGG 58.411 45.833 18.21 10.87 36.42 3.53
63 64 5.317262 ACTCCTCTGATTCATAGGATAGGGA 59.683 44.000 18.21 2.28 36.42 4.20
64 65 6.183361 ACTCCTCTGATTCATAGGATAGGGAA 60.183 42.308 18.21 0.00 36.42 3.97
65 66 6.634041 TCCTCTGATTCATAGGATAGGGAAA 58.366 40.000 14.95 0.00 32.88 3.13
66 67 7.259391 TCCTCTGATTCATAGGATAGGGAAAT 58.741 38.462 14.95 0.00 32.88 2.17
67 68 7.181665 TCCTCTGATTCATAGGATAGGGAAATG 59.818 40.741 14.95 0.00 32.88 2.32
68 69 7.262990 TCTGATTCATAGGATAGGGAAATGG 57.737 40.000 0.00 0.00 0.00 3.16
69 70 7.024994 TCTGATTCATAGGATAGGGAAATGGA 58.975 38.462 0.00 0.00 0.00 3.41
70 71 7.181665 TCTGATTCATAGGATAGGGAAATGGAG 59.818 40.741 0.00 0.00 0.00 3.86
71 72 7.024994 TGATTCATAGGATAGGGAAATGGAGA 58.975 38.462 0.00 0.00 0.00 3.71
72 73 7.517254 TGATTCATAGGATAGGGAAATGGAGAA 59.483 37.037 0.00 0.00 0.00 2.87
73 74 7.895144 TTCATAGGATAGGGAAATGGAGAAT 57.105 36.000 0.00 0.00 0.00 2.40
74 75 7.895144 TCATAGGATAGGGAAATGGAGAATT 57.105 36.000 0.00 0.00 0.00 2.17
75 76 8.293027 TCATAGGATAGGGAAATGGAGAATTT 57.707 34.615 0.00 0.00 41.33 1.82
76 77 8.736675 TCATAGGATAGGGAAATGGAGAATTTT 58.263 33.333 0.00 0.00 38.64 1.82
126 127 8.964533 AGGAATACATGTGTAGAATAGAGGAT 57.035 34.615 9.11 0.00 33.52 3.24
127 128 9.386122 AGGAATACATGTGTAGAATAGAGGATT 57.614 33.333 9.11 0.00 33.52 3.01
128 129 9.429359 GGAATACATGTGTAGAATAGAGGATTG 57.571 37.037 9.11 0.00 33.52 2.67
129 130 9.429359 GAATACATGTGTAGAATAGAGGATTGG 57.571 37.037 9.11 0.00 33.52 3.16
130 131 8.727100 ATACATGTGTAGAATAGAGGATTGGA 57.273 34.615 9.11 0.00 33.52 3.53
131 132 7.437713 ACATGTGTAGAATAGAGGATTGGAA 57.562 36.000 0.00 0.00 0.00 3.53
132 133 7.861629 ACATGTGTAGAATAGAGGATTGGAAA 58.138 34.615 0.00 0.00 0.00 3.13
133 134 8.328758 ACATGTGTAGAATAGAGGATTGGAAAA 58.671 33.333 0.00 0.00 0.00 2.29
134 135 9.177608 CATGTGTAGAATAGAGGATTGGAAAAA 57.822 33.333 0.00 0.00 0.00 1.94
135 136 8.792830 TGTGTAGAATAGAGGATTGGAAAAAG 57.207 34.615 0.00 0.00 0.00 2.27
136 137 8.602424 TGTGTAGAATAGAGGATTGGAAAAAGA 58.398 33.333 0.00 0.00 0.00 2.52
137 138 9.449719 GTGTAGAATAGAGGATTGGAAAAAGAA 57.550 33.333 0.00 0.00 0.00 2.52
138 139 9.449719 TGTAGAATAGAGGATTGGAAAAAGAAC 57.550 33.333 0.00 0.00 0.00 3.01
139 140 7.946381 AGAATAGAGGATTGGAAAAAGAACC 57.054 36.000 0.00 0.00 0.00 3.62
140 141 6.892456 AGAATAGAGGATTGGAAAAAGAACCC 59.108 38.462 0.00 0.00 0.00 4.11
141 142 4.749048 AGAGGATTGGAAAAAGAACCCT 57.251 40.909 0.00 0.00 0.00 4.34
142 143 5.860648 AGAGGATTGGAAAAAGAACCCTA 57.139 39.130 0.00 0.00 0.00 3.53
143 144 5.571285 AGAGGATTGGAAAAAGAACCCTAC 58.429 41.667 0.00 0.00 0.00 3.18
144 145 5.074515 AGAGGATTGGAAAAAGAACCCTACA 59.925 40.000 0.00 0.00 0.00 2.74
145 146 5.711698 AGGATTGGAAAAAGAACCCTACAA 58.288 37.500 0.00 0.00 0.00 2.41
146 147 5.775195 AGGATTGGAAAAAGAACCCTACAAG 59.225 40.000 0.00 0.00 0.00 3.16
147 148 5.047306 GGATTGGAAAAAGAACCCTACAAGG 60.047 44.000 0.00 0.00 34.30 3.61
148 149 4.529716 TGGAAAAAGAACCCTACAAGGT 57.470 40.909 0.00 0.00 44.00 3.50
155 156 1.373812 ACCCTACAAGGTTGGACGC 59.626 57.895 0.00 0.00 36.44 5.19
156 157 1.376812 CCCTACAAGGTTGGACGCC 60.377 63.158 0.00 0.00 31.93 5.68
157 158 1.677552 CCTACAAGGTTGGACGCCT 59.322 57.895 0.00 0.00 38.11 5.52
158 159 0.899720 CCTACAAGGTTGGACGCCTA 59.100 55.000 0.00 0.00 34.81 3.93
159 160 1.276989 CCTACAAGGTTGGACGCCTAA 59.723 52.381 0.00 0.00 34.81 2.69
160 161 2.093128 CCTACAAGGTTGGACGCCTAAT 60.093 50.000 0.00 0.00 34.81 1.73
161 162 2.579410 ACAAGGTTGGACGCCTAATT 57.421 45.000 0.00 0.00 34.81 1.40
162 163 2.871453 ACAAGGTTGGACGCCTAATTT 58.129 42.857 0.00 0.00 34.81 1.82
163 164 2.556622 ACAAGGTTGGACGCCTAATTTG 59.443 45.455 0.00 0.00 34.81 2.32
164 165 2.556622 CAAGGTTGGACGCCTAATTTGT 59.443 45.455 0.00 0.00 34.81 2.83
165 166 3.706600 AGGTTGGACGCCTAATTTGTA 57.293 42.857 0.00 0.00 33.97 2.41
166 167 3.606687 AGGTTGGACGCCTAATTTGTAG 58.393 45.455 0.00 0.00 33.97 2.74
167 168 3.262405 AGGTTGGACGCCTAATTTGTAGA 59.738 43.478 0.00 0.00 33.97 2.59
168 169 4.004982 GGTTGGACGCCTAATTTGTAGAA 58.995 43.478 0.00 0.00 0.00 2.10
169 170 4.456566 GGTTGGACGCCTAATTTGTAGAAA 59.543 41.667 0.00 0.00 0.00 2.52
170 171 5.048573 GGTTGGACGCCTAATTTGTAGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
171 172 6.440436 GTTGGACGCCTAATTTGTAGAAAAA 58.560 36.000 0.00 0.00 0.00 1.94
198 199 9.988350 AAAATATACGTCATGAATTGTGAAGAC 57.012 29.630 0.00 0.00 0.00 3.01
201 202 3.978759 CGTCATGAATTGTGAAGACGTC 58.021 45.455 7.70 7.70 42.55 4.34
202 203 3.181530 CGTCATGAATTGTGAAGACGTCC 60.182 47.826 13.01 0.00 42.55 4.79
203 204 3.745975 GTCATGAATTGTGAAGACGTCCA 59.254 43.478 13.01 0.37 0.00 4.02
204 205 4.393062 GTCATGAATTGTGAAGACGTCCAT 59.607 41.667 13.01 0.63 0.00 3.41
205 206 5.580691 GTCATGAATTGTGAAGACGTCCATA 59.419 40.000 13.01 0.00 0.00 2.74
206 207 6.258727 GTCATGAATTGTGAAGACGTCCATAT 59.741 38.462 13.01 0.00 0.00 1.78
207 208 6.823182 TCATGAATTGTGAAGACGTCCATATT 59.177 34.615 13.01 8.10 0.00 1.28
208 209 6.421377 TGAATTGTGAAGACGTCCATATTG 57.579 37.500 13.01 0.00 0.00 1.90
209 210 5.937540 TGAATTGTGAAGACGTCCATATTGT 59.062 36.000 13.01 0.00 0.00 2.71
210 211 5.801350 ATTGTGAAGACGTCCATATTGTG 57.199 39.130 13.01 0.00 0.00 3.33
231 232 8.533569 TTGTGGAGAAATTAAAACTTCCTTCT 57.466 30.769 0.00 0.00 0.00 2.85
232 233 8.533569 TGTGGAGAAATTAAAACTTCCTTCTT 57.466 30.769 0.00 0.00 0.00 2.52
233 234 8.413229 TGTGGAGAAATTAAAACTTCCTTCTTG 58.587 33.333 0.00 0.00 0.00 3.02
234 235 7.867909 GTGGAGAAATTAAAACTTCCTTCTTGG 59.132 37.037 0.00 0.00 37.10 3.61
235 236 6.868864 GGAGAAATTAAAACTTCCTTCTTGGC 59.131 38.462 0.00 0.00 35.26 4.52
236 237 7.360113 AGAAATTAAAACTTCCTTCTTGGCA 57.640 32.000 0.00 0.00 35.26 4.92
237 238 7.210174 AGAAATTAAAACTTCCTTCTTGGCAC 58.790 34.615 0.00 0.00 35.26 5.01
238 239 6.478512 AATTAAAACTTCCTTCTTGGCACA 57.521 33.333 0.00 0.00 35.26 4.57
253 254 4.439305 TGGCACAACTATTTGCTTGATC 57.561 40.909 0.00 0.00 38.85 2.92
254 255 3.193267 TGGCACAACTATTTGCTTGATCC 59.807 43.478 0.00 0.00 38.85 3.36
255 256 3.193267 GGCACAACTATTTGCTTGATCCA 59.807 43.478 0.00 0.00 38.85 3.41
256 257 4.321899 GGCACAACTATTTGCTTGATCCAA 60.322 41.667 0.00 0.00 38.85 3.53
257 258 5.229423 GCACAACTATTTGCTTGATCCAAA 58.771 37.500 0.00 0.00 36.00 3.28
258 259 5.695816 GCACAACTATTTGCTTGATCCAAAA 59.304 36.000 0.62 0.00 35.97 2.44
259 260 6.202570 GCACAACTATTTGCTTGATCCAAAAA 59.797 34.615 0.62 0.00 35.97 1.94
260 261 7.095102 GCACAACTATTTGCTTGATCCAAAAAT 60.095 33.333 0.62 0.51 35.97 1.82
261 262 9.421806 CACAACTATTTGCTTGATCCAAAAATA 57.578 29.630 0.62 1.48 35.97 1.40
262 263 9.995003 ACAACTATTTGCTTGATCCAAAAATAA 57.005 25.926 0.62 0.00 35.97 1.40
267 268 7.920160 TTTGCTTGATCCAAAAATAAATCCC 57.080 32.000 0.00 0.00 29.93 3.85
268 269 6.872585 TGCTTGATCCAAAAATAAATCCCT 57.127 33.333 0.00 0.00 0.00 4.20
269 270 6.877236 TGCTTGATCCAAAAATAAATCCCTC 58.123 36.000 0.00 0.00 0.00 4.30
270 271 6.669154 TGCTTGATCCAAAAATAAATCCCTCT 59.331 34.615 0.00 0.00 0.00 3.69
271 272 6.982724 GCTTGATCCAAAAATAAATCCCTCTG 59.017 38.462 0.00 0.00 0.00 3.35
272 273 7.364144 GCTTGATCCAAAAATAAATCCCTCTGT 60.364 37.037 0.00 0.00 0.00 3.41
273 274 7.645058 TGATCCAAAAATAAATCCCTCTGTC 57.355 36.000 0.00 0.00 0.00 3.51
274 275 6.607198 TGATCCAAAAATAAATCCCTCTGTCC 59.393 38.462 0.00 0.00 0.00 4.02
275 276 5.269189 TCCAAAAATAAATCCCTCTGTCCC 58.731 41.667 0.00 0.00 0.00 4.46
276 277 5.022787 CCAAAAATAAATCCCTCTGTCCCA 58.977 41.667 0.00 0.00 0.00 4.37
277 278 5.662657 CCAAAAATAAATCCCTCTGTCCCAT 59.337 40.000 0.00 0.00 0.00 4.00
278 279 6.838612 CCAAAAATAAATCCCTCTGTCCCATA 59.161 38.462 0.00 0.00 0.00 2.74
279 280 7.344352 CCAAAAATAAATCCCTCTGTCCCATAA 59.656 37.037 0.00 0.00 0.00 1.90
280 281 8.927411 CAAAAATAAATCCCTCTGTCCCATAAT 58.073 33.333 0.00 0.00 0.00 1.28
281 282 8.482852 AAAATAAATCCCTCTGTCCCATAATG 57.517 34.615 0.00 0.00 0.00 1.90
282 283 6.786843 ATAAATCCCTCTGTCCCATAATGT 57.213 37.500 0.00 0.00 0.00 2.71
283 284 7.888514 ATAAATCCCTCTGTCCCATAATGTA 57.111 36.000 0.00 0.00 0.00 2.29
284 285 6.590656 AAATCCCTCTGTCCCATAATGTAA 57.409 37.500 0.00 0.00 0.00 2.41
285 286 5.832539 ATCCCTCTGTCCCATAATGTAAG 57.167 43.478 0.00 0.00 0.00 2.34
286 287 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
287 288 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
288 289 4.408921 CCCTCTGTCCCATAATGTAAGACA 59.591 45.833 0.00 0.00 36.16 3.41
289 290 5.072329 CCCTCTGTCCCATAATGTAAGACAT 59.928 44.000 0.00 0.00 41.31 3.06
291 292 7.056635 CCTCTGTCCCATAATGTAAGACATTT 58.943 38.462 9.92 0.00 45.80 2.32
292 293 7.557719 CCTCTGTCCCATAATGTAAGACATTTT 59.442 37.037 9.92 0.33 45.80 1.82
293 294 8.877864 TCTGTCCCATAATGTAAGACATTTTT 57.122 30.769 9.92 0.00 45.80 1.94
337 338 7.441903 AAAAAGGTCTTATATTAGGGACGGA 57.558 36.000 0.00 0.00 0.00 4.69
338 339 6.667558 AAAGGTCTTATATTAGGGACGGAG 57.332 41.667 0.00 0.00 0.00 4.63
339 340 4.675038 AGGTCTTATATTAGGGACGGAGG 58.325 47.826 0.00 0.00 0.00 4.30
340 341 3.768215 GGTCTTATATTAGGGACGGAGGG 59.232 52.174 0.00 0.00 0.00 4.30
341 342 4.509843 GGTCTTATATTAGGGACGGAGGGA 60.510 50.000 0.00 0.00 0.00 4.20
342 343 4.705991 GTCTTATATTAGGGACGGAGGGAG 59.294 50.000 0.00 0.00 0.00 4.30
343 344 4.356190 TCTTATATTAGGGACGGAGGGAGT 59.644 45.833 0.00 0.00 0.00 3.85
344 345 5.553162 TCTTATATTAGGGACGGAGGGAGTA 59.447 44.000 0.00 0.00 0.00 2.59
345 346 4.969136 ATATTAGGGACGGAGGGAGTAT 57.031 45.455 0.00 0.00 0.00 2.12
346 347 3.632420 ATTAGGGACGGAGGGAGTATT 57.368 47.619 0.00 0.00 0.00 1.89
347 348 3.409804 TTAGGGACGGAGGGAGTATTT 57.590 47.619 0.00 0.00 0.00 1.40
348 349 1.497161 AGGGACGGAGGGAGTATTTG 58.503 55.000 0.00 0.00 0.00 2.32
349 350 0.179054 GGGACGGAGGGAGTATTTGC 60.179 60.000 0.00 0.00 0.00 3.68
350 351 0.831307 GGACGGAGGGAGTATTTGCT 59.169 55.000 0.00 0.00 0.00 3.91
351 352 1.209747 GGACGGAGGGAGTATTTGCTT 59.790 52.381 0.00 0.00 0.00 3.91
352 353 2.280628 GACGGAGGGAGTATTTGCTTG 58.719 52.381 0.00 0.00 0.00 4.01
353 354 1.906574 ACGGAGGGAGTATTTGCTTGA 59.093 47.619 0.00 0.00 0.00 3.02
354 355 2.505819 ACGGAGGGAGTATTTGCTTGAT 59.494 45.455 0.00 0.00 0.00 2.57
355 356 3.134458 CGGAGGGAGTATTTGCTTGATC 58.866 50.000 0.00 0.00 0.00 2.92
356 357 3.181461 CGGAGGGAGTATTTGCTTGATCT 60.181 47.826 0.00 0.00 0.00 2.75
357 358 4.039245 CGGAGGGAGTATTTGCTTGATCTA 59.961 45.833 0.00 0.00 0.00 1.98
358 359 5.546526 GGAGGGAGTATTTGCTTGATCTAG 58.453 45.833 0.00 0.00 0.00 2.43
359 360 5.305644 GGAGGGAGTATTTGCTTGATCTAGA 59.694 44.000 8.45 0.00 0.00 2.43
360 361 6.418057 AGGGAGTATTTGCTTGATCTAGAG 57.582 41.667 8.45 0.00 0.00 2.43
361 362 4.994217 GGGAGTATTTGCTTGATCTAGAGC 59.006 45.833 8.45 0.00 39.33 4.09
362 363 5.221621 GGGAGTATTTGCTTGATCTAGAGCT 60.222 44.000 9.79 0.00 39.60 4.09
363 364 6.015010 GGGAGTATTTGCTTGATCTAGAGCTA 60.015 42.308 9.79 0.15 39.60 3.32
364 365 7.437748 GGAGTATTTGCTTGATCTAGAGCTAA 58.562 38.462 9.79 10.92 39.60 3.09
365 366 8.093927 GGAGTATTTGCTTGATCTAGAGCTAAT 58.906 37.037 19.99 19.99 43.32 1.73
366 367 8.830201 AGTATTTGCTTGATCTAGAGCTAATG 57.170 34.615 22.46 0.00 41.81 1.90
367 368 8.646004 AGTATTTGCTTGATCTAGAGCTAATGA 58.354 33.333 22.46 12.23 41.81 2.57
368 369 7.966246 ATTTGCTTGATCTAGAGCTAATGAG 57.034 36.000 9.79 1.32 40.83 2.90
369 370 5.465532 TGCTTGATCTAGAGCTAATGAGG 57.534 43.478 9.79 0.00 39.60 3.86
370 371 4.898265 TGCTTGATCTAGAGCTAATGAGGT 59.102 41.667 9.79 0.00 39.60 3.85
378 379 3.567478 GAGCTAATGAGGTCCCAACAT 57.433 47.619 0.00 0.00 43.22 2.71
379 380 3.209410 GAGCTAATGAGGTCCCAACATG 58.791 50.000 0.00 0.00 43.22 3.21
380 381 2.092212 AGCTAATGAGGTCCCAACATGG 60.092 50.000 0.00 0.00 37.25 3.66
381 382 2.357154 GCTAATGAGGTCCCAACATGGT 60.357 50.000 0.00 0.00 35.17 3.55
382 383 3.118038 GCTAATGAGGTCCCAACATGGTA 60.118 47.826 0.00 0.00 35.17 3.25
383 384 4.446311 GCTAATGAGGTCCCAACATGGTAT 60.446 45.833 0.00 0.00 35.17 2.73
384 385 3.582998 ATGAGGTCCCAACATGGTATG 57.417 47.619 0.00 0.00 35.17 2.39
386 387 2.238646 TGAGGTCCCAACATGGTATGTC 59.761 50.000 0.00 0.00 44.07 3.06
387 388 2.505819 GAGGTCCCAACATGGTATGTCT 59.494 50.000 0.00 0.00 44.07 3.41
388 389 2.505819 AGGTCCCAACATGGTATGTCTC 59.494 50.000 0.00 0.00 44.07 3.36
389 390 2.505819 GGTCCCAACATGGTATGTCTCT 59.494 50.000 0.00 0.00 44.07 3.10
390 391 3.054361 GGTCCCAACATGGTATGTCTCTT 60.054 47.826 0.00 0.00 44.07 2.85
391 392 4.567747 GGTCCCAACATGGTATGTCTCTTT 60.568 45.833 0.00 0.00 44.07 2.52
392 393 5.010282 GTCCCAACATGGTATGTCTCTTTT 58.990 41.667 0.00 0.00 44.07 2.27
393 394 5.123979 GTCCCAACATGGTATGTCTCTTTTC 59.876 44.000 0.00 0.00 44.07 2.29
394 395 4.399303 CCCAACATGGTATGTCTCTTTTCC 59.601 45.833 0.00 0.00 44.07 3.13
395 396 5.256474 CCAACATGGTATGTCTCTTTTCCT 58.744 41.667 0.00 0.00 44.07 3.36
396 397 5.711976 CCAACATGGTATGTCTCTTTTCCTT 59.288 40.000 0.00 0.00 44.07 3.36
397 398 6.349611 CCAACATGGTATGTCTCTTTTCCTTG 60.350 42.308 0.00 0.00 44.07 3.61
398 399 5.880901 ACATGGTATGTCTCTTTTCCTTGT 58.119 37.500 0.00 0.00 39.92 3.16
399 400 5.707298 ACATGGTATGTCTCTTTTCCTTGTG 59.293 40.000 0.00 0.00 39.92 3.33
400 401 4.072131 TGGTATGTCTCTTTTCCTTGTGC 58.928 43.478 0.00 0.00 0.00 4.57
401 402 3.125316 GGTATGTCTCTTTTCCTTGTGCG 59.875 47.826 0.00 0.00 0.00 5.34
402 403 0.944386 TGTCTCTTTTCCTTGTGCGC 59.056 50.000 0.00 0.00 0.00 6.09
403 404 0.944386 GTCTCTTTTCCTTGTGCGCA 59.056 50.000 5.66 5.66 0.00 6.09
404 405 1.537202 GTCTCTTTTCCTTGTGCGCAT 59.463 47.619 15.91 0.00 0.00 4.73
405 406 1.536766 TCTCTTTTCCTTGTGCGCATG 59.463 47.619 15.91 7.24 0.00 4.06
406 407 1.536766 CTCTTTTCCTTGTGCGCATGA 59.463 47.619 15.91 5.50 0.00 3.07
407 408 1.952990 TCTTTTCCTTGTGCGCATGAA 59.047 42.857 15.91 11.82 0.00 2.57
408 409 2.557924 TCTTTTCCTTGTGCGCATGAAT 59.442 40.909 15.91 0.00 0.00 2.57
409 410 3.005684 TCTTTTCCTTGTGCGCATGAATT 59.994 39.130 15.91 0.00 0.00 2.17
410 411 3.383620 TTTCCTTGTGCGCATGAATTT 57.616 38.095 15.91 0.00 0.00 1.82
411 412 3.383620 TTCCTTGTGCGCATGAATTTT 57.616 38.095 15.91 0.00 0.00 1.82
412 413 2.674954 TCCTTGTGCGCATGAATTTTG 58.325 42.857 15.91 0.00 0.00 2.44
413 414 1.727880 CCTTGTGCGCATGAATTTTGG 59.272 47.619 15.91 3.61 0.00 3.28
414 415 2.609984 CCTTGTGCGCATGAATTTTGGA 60.610 45.455 15.91 0.00 0.00 3.53
415 416 2.808523 TGTGCGCATGAATTTTGGAA 57.191 40.000 15.91 0.00 0.00 3.53
416 417 2.402305 TGTGCGCATGAATTTTGGAAC 58.598 42.857 15.91 0.00 0.00 3.62
417 418 1.386412 GTGCGCATGAATTTTGGAACG 59.614 47.619 15.91 0.00 0.00 3.95
418 419 1.268079 TGCGCATGAATTTTGGAACGA 59.732 42.857 5.66 0.00 0.00 3.85
419 420 1.913403 GCGCATGAATTTTGGAACGAG 59.087 47.619 0.30 0.00 0.00 4.18
420 421 2.518949 CGCATGAATTTTGGAACGAGG 58.481 47.619 0.00 0.00 0.00 4.63
421 422 2.095263 CGCATGAATTTTGGAACGAGGT 60.095 45.455 0.00 0.00 0.00 3.85
422 423 3.244976 GCATGAATTTTGGAACGAGGTG 58.755 45.455 0.00 0.00 0.00 4.00
423 424 3.305335 GCATGAATTTTGGAACGAGGTGT 60.305 43.478 0.00 0.00 0.00 4.16
424 425 3.980646 TGAATTTTGGAACGAGGTGTG 57.019 42.857 0.00 0.00 0.00 3.82
425 426 3.546724 TGAATTTTGGAACGAGGTGTGA 58.453 40.909 0.00 0.00 0.00 3.58
426 427 3.314080 TGAATTTTGGAACGAGGTGTGAC 59.686 43.478 0.00 0.00 0.00 3.67
427 428 1.670791 TTTTGGAACGAGGTGTGACC 58.329 50.000 0.00 0.00 38.99 4.02
436 437 0.318784 GAGGTGTGACCGTGTGAGTC 60.319 60.000 0.00 0.00 44.90 3.36
439 440 0.933509 GTGTGACCGTGTGAGTCGAC 60.934 60.000 7.70 7.70 37.04 4.20
485 488 3.947868 TGAAGCTGAGATGGGAGAAAAG 58.052 45.455 0.00 0.00 0.00 2.27
487 490 4.532126 TGAAGCTGAGATGGGAGAAAAGTA 59.468 41.667 0.00 0.00 0.00 2.24
501 504 6.041182 GGGAGAAAAGTATCCTCTAGTCCTTC 59.959 46.154 0.00 0.00 35.30 3.46
527 530 3.770933 CCATTCATGTGAATCAAAGGGGT 59.229 43.478 5.30 0.00 42.41 4.95
531 534 3.156293 CATGTGAATCAAAGGGGTGACA 58.844 45.455 0.00 0.00 0.00 3.58
548 551 5.971895 GTGACAACACCGTAGAGTAAAAA 57.028 39.130 0.00 0.00 40.74 1.94
557 560 8.617290 ACACCGTAGAGTAAAAATTGAAGAAT 57.383 30.769 0.00 0.00 0.00 2.40
558 561 8.504005 ACACCGTAGAGTAAAAATTGAAGAATG 58.496 33.333 0.00 0.00 0.00 2.67
576 640 9.650539 TGAAGAATGAAAATTGACTTGAACAAA 57.349 25.926 0.00 0.00 0.00 2.83
588 652 3.440872 ACTTGAACAAAAGGCAACGTGTA 59.559 39.130 0.00 0.00 46.39 2.90
589 653 4.082679 ACTTGAACAAAAGGCAACGTGTAA 60.083 37.500 0.00 0.00 46.39 2.41
691 766 1.256376 GATGATGCATGTGTCGACGAC 59.744 52.381 20.97 20.97 0.00 4.34
692 767 1.070471 TGATGCATGTGTCGACGACG 61.070 55.000 22.06 9.59 34.95 5.12
787 867 5.409826 ACCACTCTTGTCTCATTCGATTTTC 59.590 40.000 0.00 0.00 0.00 2.29
899 980 1.617018 TTGCTGTCCCCCTCAGATCG 61.617 60.000 0.00 0.00 35.20 3.69
908 989 2.024871 CTCAGATCGTCCGCGTCC 59.975 66.667 4.92 0.00 39.49 4.79
941 1026 2.355756 CCAAAGTCGCACCTATCCATTG 59.644 50.000 0.00 0.00 0.00 2.82
961 1050 2.600769 CCCGGCCGGTAGCTATCT 60.601 66.667 40.52 0.00 43.05 1.98
1011 1108 1.086696 CTTCTGTTATGGCCACCACG 58.913 55.000 8.16 4.68 35.80 4.94
1727 1833 2.354422 CATGCTCGCTCGCTCGAT 60.354 61.111 0.00 0.00 37.87 3.59
1728 1834 2.050533 ATGCTCGCTCGCTCGATC 60.051 61.111 0.00 0.00 37.87 3.69
1729 1835 3.870679 ATGCTCGCTCGCTCGATCG 62.871 63.158 9.36 9.36 37.87 3.69
1794 1900 4.278669 TGGTTCGGCAAGCTGTAAATTAAA 59.721 37.500 0.18 0.00 0.00 1.52
1813 1921 8.738645 AATTAAATAGTCTAGGTTCTTGCAGG 57.261 34.615 0.00 0.00 0.00 4.85
1817 1925 4.917906 AGTCTAGGTTCTTGCAGGATTT 57.082 40.909 0.00 0.00 0.00 2.17
1818 1926 4.837972 AGTCTAGGTTCTTGCAGGATTTC 58.162 43.478 0.00 0.00 0.00 2.17
1851 1959 7.011857 TGTGTTTGATTTTGATTTTGCTTACCC 59.988 33.333 0.00 0.00 0.00 3.69
1852 1960 6.201806 TGTTTGATTTTGATTTTGCTTACCCG 59.798 34.615 0.00 0.00 0.00 5.28
1944 2062 2.223479 CGTTTTAGTTGGTGCTGCAAGT 60.223 45.455 2.77 0.00 35.30 3.16
1948 2066 2.051334 AGTTGGTGCTGCAAGTTGTA 57.949 45.000 2.77 0.00 35.30 2.41
1949 2067 2.586425 AGTTGGTGCTGCAAGTTGTAT 58.414 42.857 2.77 0.00 35.30 2.29
1950 2068 3.750371 AGTTGGTGCTGCAAGTTGTATA 58.250 40.909 2.77 0.00 35.30 1.47
1952 2070 5.496556 AGTTGGTGCTGCAAGTTGTATATA 58.503 37.500 2.77 0.00 35.30 0.86
1954 2072 6.603201 AGTTGGTGCTGCAAGTTGTATATAAT 59.397 34.615 2.77 0.00 35.30 1.28
1955 2073 7.122650 AGTTGGTGCTGCAAGTTGTATATAATT 59.877 33.333 2.77 0.00 35.30 1.40
1957 2075 6.601217 TGGTGCTGCAAGTTGTATATAATTGA 59.399 34.615 2.77 0.00 35.30 2.57
1982 2114 2.724349 GCATTAGGCGCTTGAATTGAG 58.276 47.619 7.64 0.00 0.00 3.02
2026 2162 4.823989 GCAATATATCCTGGTGCTTGACTT 59.176 41.667 0.00 0.00 32.43 3.01
2043 2182 4.200874 TGACTTACTAGCTAGCTGGACTC 58.799 47.826 32.14 19.20 0.00 3.36
2047 2186 1.286553 ACTAGCTAGCTGGACTCCACT 59.713 52.381 32.14 7.19 0.00 4.00
2048 2187 1.953686 CTAGCTAGCTGGACTCCACTC 59.046 57.143 27.68 0.00 0.00 3.51
2049 2188 0.686112 AGCTAGCTGGACTCCACTCC 60.686 60.000 18.57 0.00 0.00 3.85
2050 2189 0.972983 GCTAGCTGGACTCCACTCCA 60.973 60.000 7.70 0.00 38.05 3.86
2051 2190 1.786937 CTAGCTGGACTCCACTCCAT 58.213 55.000 0.00 0.00 39.72 3.41
2053 2192 0.908198 AGCTGGACTCCACTCCATTC 59.092 55.000 0.00 0.00 39.72 2.67
2054 2193 0.908198 GCTGGACTCCACTCCATTCT 59.092 55.000 0.00 0.00 39.72 2.40
2055 2194 1.134551 GCTGGACTCCACTCCATTCTC 60.135 57.143 0.00 0.00 39.72 2.87
2056 2195 2.182827 CTGGACTCCACTCCATTCTCA 58.817 52.381 0.00 0.00 39.72 3.27
2080 2231 3.581755 GTGTACATGCGAACCACTTCTA 58.418 45.455 0.00 0.00 0.00 2.10
2081 2232 3.612860 GTGTACATGCGAACCACTTCTAG 59.387 47.826 0.00 0.00 0.00 2.43
2082 2233 1.726853 ACATGCGAACCACTTCTAGC 58.273 50.000 0.00 0.00 0.00 3.42
2083 2234 1.276421 ACATGCGAACCACTTCTAGCT 59.724 47.619 0.00 0.00 0.00 3.32
2084 2235 2.496070 ACATGCGAACCACTTCTAGCTA 59.504 45.455 0.00 0.00 0.00 3.32
2088 2239 2.479901 GCGAACCACTTCTAGCTACTCC 60.480 54.545 0.00 0.00 0.00 3.85
2100 2251 9.036980 ACTTCTAGCTACTCCAAGAAATTAAGA 57.963 33.333 0.00 0.00 0.00 2.10
2101 2252 9.877178 CTTCTAGCTACTCCAAGAAATTAAGAA 57.123 33.333 0.00 0.00 0.00 2.52
2123 2275 4.675976 TGTCGTATTTAATCCACCGGAT 57.324 40.909 9.46 0.00 45.46 4.18
2151 2303 2.131183 GATCTACAGCTTGATCACCGC 58.869 52.381 13.27 7.86 38.97 5.68
2152 2304 0.894835 TCTACAGCTTGATCACCGCA 59.105 50.000 16.09 0.00 0.00 5.69
2153 2305 1.482182 TCTACAGCTTGATCACCGCAT 59.518 47.619 16.09 8.06 0.00 4.73
2154 2306 2.693074 TCTACAGCTTGATCACCGCATA 59.307 45.455 16.09 8.63 0.00 3.14
2155 2307 1.656652 ACAGCTTGATCACCGCATAC 58.343 50.000 16.09 0.00 0.00 2.39
2156 2308 1.208052 ACAGCTTGATCACCGCATACT 59.792 47.619 16.09 0.00 0.00 2.12
2157 2309 1.863454 CAGCTTGATCACCGCATACTC 59.137 52.381 16.09 0.00 0.00 2.59
2158 2310 1.202580 AGCTTGATCACCGCATACTCC 60.203 52.381 16.09 0.00 0.00 3.85
2159 2311 1.473257 GCTTGATCACCGCATACTCCA 60.473 52.381 10.47 0.00 0.00 3.86
2160 2312 2.905075 CTTGATCACCGCATACTCCAA 58.095 47.619 0.00 0.00 0.00 3.53
2161 2313 2.602257 TGATCACCGCATACTCCAAG 57.398 50.000 0.00 0.00 0.00 3.61
2162 2314 2.107366 TGATCACCGCATACTCCAAGA 58.893 47.619 0.00 0.00 0.00 3.02
2163 2315 2.499693 TGATCACCGCATACTCCAAGAA 59.500 45.455 0.00 0.00 0.00 2.52
2164 2316 3.055458 TGATCACCGCATACTCCAAGAAA 60.055 43.478 0.00 0.00 0.00 2.52
2165 2317 3.627395 TCACCGCATACTCCAAGAAAT 57.373 42.857 0.00 0.00 0.00 2.17
2166 2318 3.950397 TCACCGCATACTCCAAGAAATT 58.050 40.909 0.00 0.00 0.00 1.82
2167 2319 5.092554 TCACCGCATACTCCAAGAAATTA 57.907 39.130 0.00 0.00 0.00 1.40
2168 2320 5.492895 TCACCGCATACTCCAAGAAATTAA 58.507 37.500 0.00 0.00 0.00 1.40
2169 2321 5.584649 TCACCGCATACTCCAAGAAATTAAG 59.415 40.000 0.00 0.00 0.00 1.85
2170 2322 5.354234 CACCGCATACTCCAAGAAATTAAGT 59.646 40.000 0.00 0.00 0.00 2.24
2171 2323 6.537301 CACCGCATACTCCAAGAAATTAAGTA 59.463 38.462 0.00 0.00 0.00 2.24
2172 2324 7.226720 CACCGCATACTCCAAGAAATTAAGTAT 59.773 37.037 0.00 0.00 34.35 2.12
2173 2325 8.426489 ACCGCATACTCCAAGAAATTAAGTATA 58.574 33.333 0.00 0.00 32.76 1.47
2204 2356 4.019321 ACTCTTCTTATAGTTGGCCTGCAA 60.019 41.667 3.32 0.00 0.00 4.08
2207 2359 3.554934 TCTTATAGTTGGCCTGCAATGG 58.445 45.455 3.32 0.00 0.00 3.16
2238 2394 4.706842 TTAGTCTTTCTGTTGAGGCCTT 57.293 40.909 6.77 0.00 0.00 4.35
2239 2395 2.856222 AGTCTTTCTGTTGAGGCCTTG 58.144 47.619 6.77 0.00 0.00 3.61
2240 2396 1.882623 GTCTTTCTGTTGAGGCCTTGG 59.117 52.381 6.77 0.00 0.00 3.61
2241 2397 1.774254 TCTTTCTGTTGAGGCCTTGGA 59.226 47.619 6.77 0.00 0.00 3.53
2248 2404 2.129555 TTGAGGCCTTGGACCTGAGC 62.130 60.000 6.77 0.00 37.77 4.26
2249 2405 3.334054 AGGCCTTGGACCTGAGCC 61.334 66.667 0.00 10.29 44.20 4.70
2250 2406 3.650950 GGCCTTGGACCTGAGCCA 61.651 66.667 12.65 0.00 43.32 4.75
2251 2407 2.679716 GCCTTGGACCTGAGCCAT 59.320 61.111 0.00 0.00 34.90 4.40
2252 2408 1.751927 GCCTTGGACCTGAGCCATG 60.752 63.158 0.00 0.00 34.90 3.66
2253 2409 1.993653 CCTTGGACCTGAGCCATGA 59.006 57.895 0.00 0.00 34.90 3.07
2258 2414 2.693864 ACCTGAGCCATGAGGGGG 60.694 66.667 0.00 0.00 37.04 5.40
2266 2426 1.774856 AGCCATGAGGGGGTTATACAC 59.225 52.381 0.00 0.00 34.27 2.90
2272 2432 5.368523 CCATGAGGGGGTTATACACTAAGAA 59.631 44.000 0.00 0.00 0.00 2.52
2274 2434 4.966805 TGAGGGGGTTATACACTAAGAAGG 59.033 45.833 0.00 0.00 0.00 3.46
2275 2435 5.214293 GAGGGGGTTATACACTAAGAAGGA 58.786 45.833 0.00 0.00 0.00 3.36
2280 2440 6.608808 GGGGTTATACACTAAGAAGGACTACA 59.391 42.308 0.00 0.00 0.00 2.74
2341 2714 6.393171 TGATGATATTGCTCACGATCTTAGG 58.607 40.000 0.00 0.00 0.00 2.69
2343 2716 6.894339 TGATATTGCTCACGATCTTAGGTA 57.106 37.500 0.00 0.00 0.00 3.08
2344 2717 7.468141 TGATATTGCTCACGATCTTAGGTAT 57.532 36.000 0.00 0.00 0.00 2.73
2345 2718 7.315890 TGATATTGCTCACGATCTTAGGTATG 58.684 38.462 0.00 0.00 0.00 2.39
2346 2719 3.371102 TGCTCACGATCTTAGGTATGC 57.629 47.619 0.00 0.00 0.00 3.14
2358 2735 6.500589 TCTTAGGTATGCCTTCTGCTAATT 57.499 37.500 7.98 0.00 44.18 1.40
2378 2766 6.824305 AATTACTCAAGGGATCACAAACAG 57.176 37.500 0.00 0.00 0.00 3.16
2380 2768 2.443255 ACTCAAGGGATCACAAACAGGT 59.557 45.455 0.00 0.00 0.00 4.00
2390 2778 1.181098 ACAAACAGGTCCATGCAGGC 61.181 55.000 0.00 0.00 37.29 4.85
2410 2942 4.156739 AGGCTTGCAGCAAGTTTCTAATAC 59.843 41.667 31.26 14.32 44.75 1.89
2411 2943 4.156739 GGCTTGCAGCAAGTTTCTAATACT 59.843 41.667 31.26 0.00 44.75 2.12
2412 2944 5.354234 GGCTTGCAGCAAGTTTCTAATACTA 59.646 40.000 31.26 0.00 44.75 1.82
2413 2945 6.457528 GGCTTGCAGCAAGTTTCTAATACTAG 60.458 42.308 31.26 6.79 44.75 2.57
2432 2964 9.571816 AATACTAGGACACAGTAATAGTAGACC 57.428 37.037 0.00 0.00 33.69 3.85
2513 3045 3.138283 TCAATTCTCGGAATGCCCCTATT 59.862 43.478 0.70 0.00 0.00 1.73
2516 3048 4.781775 TTCTCGGAATGCCCCTATTTTA 57.218 40.909 0.00 0.00 0.00 1.52
2518 3050 5.319043 TCTCGGAATGCCCCTATTTTATT 57.681 39.130 0.00 0.00 0.00 1.40
2519 3051 5.701224 TCTCGGAATGCCCCTATTTTATTT 58.299 37.500 0.00 0.00 0.00 1.40
2520 3052 5.768164 TCTCGGAATGCCCCTATTTTATTTC 59.232 40.000 0.00 0.00 0.00 2.17
2525 3057 7.768582 CGGAATGCCCCTATTTTATTTCTTTTT 59.231 33.333 0.00 0.00 0.00 1.94
2579 3113 1.074566 CTTCAACTTCCCCTCCAGCTT 59.925 52.381 0.00 0.00 0.00 3.74
2601 3135 0.662619 TGAAAGCAGTTGTTGGCTCG 59.337 50.000 0.00 0.00 40.01 5.03
2602 3136 0.661483 GAAAGCAGTTGTTGGCTCGC 60.661 55.000 0.00 0.00 40.01 5.03
2603 3137 1.103398 AAAGCAGTTGTTGGCTCGCT 61.103 50.000 0.00 0.00 40.01 4.93
2608 3142 2.119457 CAGTTGTTGGCTCGCTTTTTC 58.881 47.619 0.00 0.00 0.00 2.29
2609 3143 1.067060 AGTTGTTGGCTCGCTTTTTCC 59.933 47.619 0.00 0.00 0.00 3.13
2610 3144 1.067060 GTTGTTGGCTCGCTTTTTCCT 59.933 47.619 0.00 0.00 0.00 3.36
2611 3145 1.398692 TGTTGGCTCGCTTTTTCCTT 58.601 45.000 0.00 0.00 0.00 3.36
2612 3146 1.754226 TGTTGGCTCGCTTTTTCCTTT 59.246 42.857 0.00 0.00 0.00 3.11
2613 3147 2.167487 TGTTGGCTCGCTTTTTCCTTTT 59.833 40.909 0.00 0.00 0.00 2.27
2614 3148 3.194861 GTTGGCTCGCTTTTTCCTTTTT 58.805 40.909 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.400213 TGGGTGTCCAGCACTAAAGG 59.600 55.000 0.00 0.00 46.86 3.11
1 2 2.270352 TTGGGTGTCCAGCACTAAAG 57.730 50.000 0.00 0.00 46.86 1.85
2 3 2.738587 TTTGGGTGTCCAGCACTAAA 57.261 45.000 0.00 0.00 46.86 1.85
3 4 2.554344 GGATTTGGGTGTCCAGCACTAA 60.554 50.000 0.00 0.00 46.86 2.24
4 5 1.004277 GGATTTGGGTGTCCAGCACTA 59.996 52.381 0.00 0.00 46.86 2.74
5 6 0.251341 GGATTTGGGTGTCCAGCACT 60.251 55.000 0.00 0.00 46.86 4.40
6 7 1.250840 GGGATTTGGGTGTCCAGCAC 61.251 60.000 0.00 0.00 45.04 4.40
7 8 1.076549 GGGATTTGGGTGTCCAGCA 59.923 57.895 0.00 0.00 45.04 4.41
8 9 1.682344 GGGGATTTGGGTGTCCAGC 60.682 63.158 0.00 0.00 45.04 4.85
9 10 0.409484 AAGGGGATTTGGGTGTCCAG 59.591 55.000 0.00 0.00 45.04 3.86
10 11 0.863956 AAAGGGGATTTGGGTGTCCA 59.136 50.000 0.00 0.00 42.25 4.02
11 12 2.024176 AAAAGGGGATTTGGGTGTCC 57.976 50.000 0.00 0.00 0.00 4.02
31 32 7.623677 TCCTATGAATCAGAGGAGTTCCTAAAA 59.376 37.037 21.49 0.00 45.43 1.52
32 33 7.132805 TCCTATGAATCAGAGGAGTTCCTAAA 58.867 38.462 21.49 0.00 45.43 1.85
33 34 6.683537 TCCTATGAATCAGAGGAGTTCCTAA 58.316 40.000 21.49 0.00 45.43 2.69
34 35 6.281190 TCCTATGAATCAGAGGAGTTCCTA 57.719 41.667 21.49 0.00 45.43 2.94
35 36 5.149584 TCCTATGAATCAGAGGAGTTCCT 57.850 43.478 21.49 0.00 45.43 3.36
42 43 6.942163 TTTCCCTATCCTATGAATCAGAGG 57.058 41.667 17.30 17.30 43.49 3.69
43 44 7.181665 TCCATTTCCCTATCCTATGAATCAGAG 59.818 40.741 0.00 0.00 0.00 3.35
44 45 7.024994 TCCATTTCCCTATCCTATGAATCAGA 58.975 38.462 0.00 0.00 0.00 3.27
45 46 7.181665 TCTCCATTTCCCTATCCTATGAATCAG 59.818 40.741 0.00 0.00 0.00 2.90
46 47 7.024994 TCTCCATTTCCCTATCCTATGAATCA 58.975 38.462 0.00 0.00 0.00 2.57
47 48 7.502060 TCTCCATTTCCCTATCCTATGAATC 57.498 40.000 0.00 0.00 0.00 2.52
48 49 7.895144 TTCTCCATTTCCCTATCCTATGAAT 57.105 36.000 0.00 0.00 0.00 2.57
49 50 7.895144 ATTCTCCATTTCCCTATCCTATGAA 57.105 36.000 0.00 0.00 0.00 2.57
50 51 7.895144 AATTCTCCATTTCCCTATCCTATGA 57.105 36.000 0.00 0.00 0.00 2.15
51 52 8.946797 AAAATTCTCCATTTCCCTATCCTATG 57.053 34.615 0.00 0.00 33.60 2.23
101 102 8.964533 ATCCTCTATTCTACACATGTATTCCT 57.035 34.615 0.00 0.00 0.00 3.36
102 103 9.429359 CAATCCTCTATTCTACACATGTATTCC 57.571 37.037 0.00 0.00 0.00 3.01
103 104 9.429359 CCAATCCTCTATTCTACACATGTATTC 57.571 37.037 0.00 0.00 0.00 1.75
104 105 9.159254 TCCAATCCTCTATTCTACACATGTATT 57.841 33.333 0.00 0.00 0.00 1.89
105 106 8.727100 TCCAATCCTCTATTCTACACATGTAT 57.273 34.615 0.00 0.00 0.00 2.29
106 107 8.547481 TTCCAATCCTCTATTCTACACATGTA 57.453 34.615 0.00 0.00 0.00 2.29
107 108 7.437713 TTCCAATCCTCTATTCTACACATGT 57.562 36.000 0.00 0.00 0.00 3.21
108 109 8.737168 TTTTCCAATCCTCTATTCTACACATG 57.263 34.615 0.00 0.00 0.00 3.21
109 110 9.401058 CTTTTTCCAATCCTCTATTCTACACAT 57.599 33.333 0.00 0.00 0.00 3.21
110 111 8.602424 TCTTTTTCCAATCCTCTATTCTACACA 58.398 33.333 0.00 0.00 0.00 3.72
111 112 9.449719 TTCTTTTTCCAATCCTCTATTCTACAC 57.550 33.333 0.00 0.00 0.00 2.90
112 113 9.449719 GTTCTTTTTCCAATCCTCTATTCTACA 57.550 33.333 0.00 0.00 0.00 2.74
113 114 8.894731 GGTTCTTTTTCCAATCCTCTATTCTAC 58.105 37.037 0.00 0.00 0.00 2.59
114 115 8.053355 GGGTTCTTTTTCCAATCCTCTATTCTA 58.947 37.037 0.00 0.00 0.00 2.10
115 116 6.892456 GGGTTCTTTTTCCAATCCTCTATTCT 59.108 38.462 0.00 0.00 0.00 2.40
116 117 6.892456 AGGGTTCTTTTTCCAATCCTCTATTC 59.108 38.462 0.00 0.00 0.00 1.75
117 118 6.805150 AGGGTTCTTTTTCCAATCCTCTATT 58.195 36.000 0.00 0.00 0.00 1.73
118 119 6.408770 AGGGTTCTTTTTCCAATCCTCTAT 57.591 37.500 0.00 0.00 0.00 1.98
119 120 5.860648 AGGGTTCTTTTTCCAATCCTCTA 57.139 39.130 0.00 0.00 0.00 2.43
120 121 4.749048 AGGGTTCTTTTTCCAATCCTCT 57.251 40.909 0.00 0.00 0.00 3.69
121 122 5.321927 TGTAGGGTTCTTTTTCCAATCCTC 58.678 41.667 0.00 0.00 0.00 3.71
122 123 5.333566 TGTAGGGTTCTTTTTCCAATCCT 57.666 39.130 0.00 0.00 0.00 3.24
123 124 5.047306 CCTTGTAGGGTTCTTTTTCCAATCC 60.047 44.000 0.00 0.00 0.00 3.01
124 125 5.538813 ACCTTGTAGGGTTCTTTTTCCAATC 59.461 40.000 0.00 0.00 40.58 2.67
125 126 5.464069 ACCTTGTAGGGTTCTTTTTCCAAT 58.536 37.500 0.00 0.00 40.58 3.16
126 127 4.874199 ACCTTGTAGGGTTCTTTTTCCAA 58.126 39.130 0.00 0.00 40.58 3.53
127 128 4.529716 ACCTTGTAGGGTTCTTTTTCCA 57.470 40.909 0.00 0.00 40.58 3.53
128 129 4.038763 CCAACCTTGTAGGGTTCTTTTTCC 59.961 45.833 0.00 0.00 46.58 3.13
129 130 4.891168 TCCAACCTTGTAGGGTTCTTTTTC 59.109 41.667 0.00 0.00 46.58 2.29
130 131 4.647853 GTCCAACCTTGTAGGGTTCTTTTT 59.352 41.667 0.00 0.00 46.58 1.94
131 132 4.212716 GTCCAACCTTGTAGGGTTCTTTT 58.787 43.478 0.00 0.00 46.58 2.27
132 133 3.746432 CGTCCAACCTTGTAGGGTTCTTT 60.746 47.826 0.00 0.00 46.58 2.52
133 134 2.224450 CGTCCAACCTTGTAGGGTTCTT 60.224 50.000 0.00 0.00 46.58 2.52
134 135 1.346722 CGTCCAACCTTGTAGGGTTCT 59.653 52.381 0.00 0.00 46.58 3.01
135 136 1.804601 CGTCCAACCTTGTAGGGTTC 58.195 55.000 0.00 0.00 46.58 3.62
137 138 1.373812 GCGTCCAACCTTGTAGGGT 59.626 57.895 0.00 0.00 40.58 4.34
138 139 1.376812 GGCGTCCAACCTTGTAGGG 60.377 63.158 0.00 0.00 40.58 3.53
139 140 0.899720 TAGGCGTCCAACCTTGTAGG 59.100 55.000 0.00 0.00 42.49 3.18
140 141 2.754946 TTAGGCGTCCAACCTTGTAG 57.245 50.000 0.00 0.00 38.81 2.74
141 142 3.706600 AATTAGGCGTCCAACCTTGTA 57.293 42.857 0.00 0.00 38.81 2.41
142 143 2.556622 CAAATTAGGCGTCCAACCTTGT 59.443 45.455 0.00 0.00 38.81 3.16
143 144 2.556622 ACAAATTAGGCGTCCAACCTTG 59.443 45.455 0.00 0.00 38.81 3.61
144 145 2.871453 ACAAATTAGGCGTCCAACCTT 58.129 42.857 0.00 0.00 38.81 3.50
145 146 2.579410 ACAAATTAGGCGTCCAACCT 57.421 45.000 0.00 0.00 41.57 3.50
146 147 3.602483 TCTACAAATTAGGCGTCCAACC 58.398 45.455 0.00 0.00 0.00 3.77
147 148 5.616488 TTTCTACAAATTAGGCGTCCAAC 57.384 39.130 0.00 0.00 0.00 3.77
148 149 6.636562 TTTTTCTACAAATTAGGCGTCCAA 57.363 33.333 0.00 0.00 0.00 3.53
172 173 9.988350 GTCTTCACAATTCATGACGTATATTTT 57.012 29.630 0.00 0.00 0.00 1.82
173 174 8.328146 CGTCTTCACAATTCATGACGTATATTT 58.672 33.333 0.00 0.00 41.23 1.40
174 175 7.841486 CGTCTTCACAATTCATGACGTATATT 58.159 34.615 0.00 0.00 41.23 1.28
175 176 7.394870 CGTCTTCACAATTCATGACGTATAT 57.605 36.000 0.00 0.00 41.23 0.86
176 177 6.806120 CGTCTTCACAATTCATGACGTATA 57.194 37.500 0.00 0.00 41.23 1.47
177 178 5.702622 CGTCTTCACAATTCATGACGTAT 57.297 39.130 0.00 0.00 41.23 3.06
181 182 3.745975 TGGACGTCTTCACAATTCATGAC 59.254 43.478 16.46 0.00 0.00 3.06
182 183 4.001618 TGGACGTCTTCACAATTCATGA 57.998 40.909 16.46 0.00 0.00 3.07
183 184 4.952262 ATGGACGTCTTCACAATTCATG 57.048 40.909 16.46 0.00 0.00 3.07
184 185 6.599244 ACAATATGGACGTCTTCACAATTCAT 59.401 34.615 16.46 9.20 0.00 2.57
185 186 5.937540 ACAATATGGACGTCTTCACAATTCA 59.062 36.000 16.46 1.43 0.00 2.57
186 187 6.250819 CACAATATGGACGTCTTCACAATTC 58.749 40.000 16.46 0.00 0.00 2.17
187 188 6.182039 CACAATATGGACGTCTTCACAATT 57.818 37.500 16.46 6.90 0.00 2.32
188 189 5.801350 CACAATATGGACGTCTTCACAAT 57.199 39.130 16.46 1.08 0.00 2.71
205 206 9.147732 AGAAGGAAGTTTTAATTTCTCCACAAT 57.852 29.630 0.00 0.00 0.00 2.71
206 207 8.533569 AGAAGGAAGTTTTAATTTCTCCACAA 57.466 30.769 0.00 0.00 0.00 3.33
207 208 8.413229 CAAGAAGGAAGTTTTAATTTCTCCACA 58.587 33.333 0.00 0.00 0.00 4.17
208 209 7.867909 CCAAGAAGGAAGTTTTAATTTCTCCAC 59.132 37.037 0.00 0.00 41.22 4.02
209 210 7.471399 GCCAAGAAGGAAGTTTTAATTTCTCCA 60.471 37.037 0.00 0.00 41.22 3.86
210 211 6.868864 GCCAAGAAGGAAGTTTTAATTTCTCC 59.131 38.462 0.00 0.00 41.22 3.71
211 212 7.382488 GTGCCAAGAAGGAAGTTTTAATTTCTC 59.618 37.037 0.00 0.00 41.22 2.87
212 213 7.147742 TGTGCCAAGAAGGAAGTTTTAATTTCT 60.148 33.333 0.00 0.00 41.22 2.52
213 214 6.983890 TGTGCCAAGAAGGAAGTTTTAATTTC 59.016 34.615 0.00 0.00 41.22 2.17
214 215 6.883744 TGTGCCAAGAAGGAAGTTTTAATTT 58.116 32.000 0.00 0.00 41.22 1.82
215 216 6.478512 TGTGCCAAGAAGGAAGTTTTAATT 57.521 33.333 0.00 0.00 41.22 1.40
216 217 6.098266 AGTTGTGCCAAGAAGGAAGTTTTAAT 59.902 34.615 0.00 0.00 41.22 1.40
217 218 5.420739 AGTTGTGCCAAGAAGGAAGTTTTAA 59.579 36.000 0.00 0.00 41.22 1.52
218 219 4.953579 AGTTGTGCCAAGAAGGAAGTTTTA 59.046 37.500 0.00 0.00 41.22 1.52
219 220 3.769300 AGTTGTGCCAAGAAGGAAGTTTT 59.231 39.130 0.00 0.00 41.22 2.43
220 221 3.365472 AGTTGTGCCAAGAAGGAAGTTT 58.635 40.909 0.00 0.00 41.22 2.66
221 222 3.018423 AGTTGTGCCAAGAAGGAAGTT 57.982 42.857 0.00 0.00 41.22 2.66
222 223 2.736670 AGTTGTGCCAAGAAGGAAGT 57.263 45.000 0.00 0.00 41.22 3.01
223 224 5.464168 CAAATAGTTGTGCCAAGAAGGAAG 58.536 41.667 0.00 0.00 41.22 3.46
224 225 4.261994 GCAAATAGTTGTGCCAAGAAGGAA 60.262 41.667 4.65 0.00 36.93 3.36
225 226 3.255642 GCAAATAGTTGTGCCAAGAAGGA 59.744 43.478 4.65 0.00 36.93 3.36
226 227 3.256631 AGCAAATAGTTGTGCCAAGAAGG 59.743 43.478 4.65 0.00 41.88 3.46
227 228 4.510038 AGCAAATAGTTGTGCCAAGAAG 57.490 40.909 4.65 0.00 41.88 2.85
228 229 4.340666 TCAAGCAAATAGTTGTGCCAAGAA 59.659 37.500 4.65 0.00 41.88 2.52
229 230 3.888323 TCAAGCAAATAGTTGTGCCAAGA 59.112 39.130 4.65 0.00 41.88 3.02
230 231 4.241590 TCAAGCAAATAGTTGTGCCAAG 57.758 40.909 4.65 0.00 41.88 3.61
231 232 4.321899 GGATCAAGCAAATAGTTGTGCCAA 60.322 41.667 4.65 0.00 41.88 4.52
232 233 3.193267 GGATCAAGCAAATAGTTGTGCCA 59.807 43.478 4.65 0.00 41.88 4.92
233 234 3.193267 TGGATCAAGCAAATAGTTGTGCC 59.807 43.478 4.65 0.00 41.88 5.01
234 235 4.439305 TGGATCAAGCAAATAGTTGTGC 57.561 40.909 4.65 0.00 41.22 4.57
235 236 7.712264 TTTTTGGATCAAGCAAATAGTTGTG 57.288 32.000 4.65 0.00 37.06 3.33
236 237 9.995003 TTATTTTTGGATCAAGCAAATAGTTGT 57.005 25.926 4.65 0.00 37.06 3.32
241 242 9.612066 GGGATTTATTTTTGGATCAAGCAAATA 57.388 29.630 0.00 0.00 0.00 1.40
242 243 8.330993 AGGGATTTATTTTTGGATCAAGCAAAT 58.669 29.630 0.00 0.00 0.00 2.32
243 244 7.688343 AGGGATTTATTTTTGGATCAAGCAAA 58.312 30.769 0.00 0.00 0.00 3.68
244 245 7.180766 AGAGGGATTTATTTTTGGATCAAGCAA 59.819 33.333 0.00 0.00 0.00 3.91
245 246 6.669154 AGAGGGATTTATTTTTGGATCAAGCA 59.331 34.615 0.00 0.00 0.00 3.91
246 247 6.982724 CAGAGGGATTTATTTTTGGATCAAGC 59.017 38.462 0.00 0.00 0.00 4.01
247 248 8.071177 ACAGAGGGATTTATTTTTGGATCAAG 57.929 34.615 0.00 0.00 0.00 3.02
248 249 7.124147 GGACAGAGGGATTTATTTTTGGATCAA 59.876 37.037 0.00 0.00 0.00 2.57
249 250 6.607198 GGACAGAGGGATTTATTTTTGGATCA 59.393 38.462 0.00 0.00 0.00 2.92
250 251 6.040955 GGGACAGAGGGATTTATTTTTGGATC 59.959 42.308 0.00 0.00 0.00 3.36
251 252 5.899547 GGGACAGAGGGATTTATTTTTGGAT 59.100 40.000 0.00 0.00 0.00 3.41
252 253 5.222442 TGGGACAGAGGGATTTATTTTTGGA 60.222 40.000 0.00 0.00 0.00 3.53
253 254 5.022787 TGGGACAGAGGGATTTATTTTTGG 58.977 41.667 0.00 0.00 0.00 3.28
263 264 8.362687 ATGTCTTACATTATGGGACAGAGGGAT 61.363 40.741 17.20 3.97 37.35 3.85
264 265 7.099427 ATGTCTTACATTATGGGACAGAGGGA 61.099 42.308 17.20 1.33 37.35 4.20
265 266 5.072329 ATGTCTTACATTATGGGACAGAGGG 59.928 44.000 17.20 0.00 37.35 4.30
266 267 6.179906 ATGTCTTACATTATGGGACAGAGG 57.820 41.667 17.20 0.00 37.35 3.69
313 314 7.419865 CCTCCGTCCCTAATATAAGACCTTTTT 60.420 40.741 0.00 0.00 0.00 1.94
314 315 6.042897 CCTCCGTCCCTAATATAAGACCTTTT 59.957 42.308 0.00 0.00 0.00 2.27
315 316 5.543020 CCTCCGTCCCTAATATAAGACCTTT 59.457 44.000 0.00 0.00 0.00 3.11
316 317 5.085219 CCTCCGTCCCTAATATAAGACCTT 58.915 45.833 0.00 0.00 0.00 3.50
317 318 4.510567 CCCTCCGTCCCTAATATAAGACCT 60.511 50.000 0.00 0.00 0.00 3.85
318 319 3.768215 CCCTCCGTCCCTAATATAAGACC 59.232 52.174 0.00 0.00 0.00 3.85
319 320 4.670765 TCCCTCCGTCCCTAATATAAGAC 58.329 47.826 0.00 0.00 0.00 3.01
320 321 4.356190 ACTCCCTCCGTCCCTAATATAAGA 59.644 45.833 0.00 0.00 0.00 2.10
321 322 4.675038 ACTCCCTCCGTCCCTAATATAAG 58.325 47.826 0.00 0.00 0.00 1.73
322 323 4.754411 ACTCCCTCCGTCCCTAATATAA 57.246 45.455 0.00 0.00 0.00 0.98
323 324 6.413129 AATACTCCCTCCGTCCCTAATATA 57.587 41.667 0.00 0.00 0.00 0.86
324 325 4.969136 ATACTCCCTCCGTCCCTAATAT 57.031 45.455 0.00 0.00 0.00 1.28
325 326 4.754411 AATACTCCCTCCGTCCCTAATA 57.246 45.455 0.00 0.00 0.00 0.98
326 327 3.632420 AATACTCCCTCCGTCCCTAAT 57.368 47.619 0.00 0.00 0.00 1.73
327 328 3.036091 CAAATACTCCCTCCGTCCCTAA 58.964 50.000 0.00 0.00 0.00 2.69
328 329 2.674420 CAAATACTCCCTCCGTCCCTA 58.326 52.381 0.00 0.00 0.00 3.53
329 330 1.497161 CAAATACTCCCTCCGTCCCT 58.503 55.000 0.00 0.00 0.00 4.20
330 331 0.179054 GCAAATACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
331 332 0.831307 AGCAAATACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
332 333 2.093658 TCAAGCAAATACTCCCTCCGTC 60.094 50.000 0.00 0.00 0.00 4.79
333 334 1.906574 TCAAGCAAATACTCCCTCCGT 59.093 47.619 0.00 0.00 0.00 4.69
334 335 2.691409 TCAAGCAAATACTCCCTCCG 57.309 50.000 0.00 0.00 0.00 4.63
335 336 4.429854 AGATCAAGCAAATACTCCCTCC 57.570 45.455 0.00 0.00 0.00 4.30
336 337 6.412362 TCTAGATCAAGCAAATACTCCCTC 57.588 41.667 0.00 0.00 0.00 4.30
337 338 5.221621 GCTCTAGATCAAGCAAATACTCCCT 60.222 44.000 9.20 0.00 38.42 4.20
338 339 4.994217 GCTCTAGATCAAGCAAATACTCCC 59.006 45.833 9.20 0.00 38.42 4.30
339 340 5.852827 AGCTCTAGATCAAGCAAATACTCC 58.147 41.667 14.69 0.00 41.06 3.85
340 341 8.924691 CATTAGCTCTAGATCAAGCAAATACTC 58.075 37.037 14.69 0.00 41.06 2.59
341 342 8.646004 TCATTAGCTCTAGATCAAGCAAATACT 58.354 33.333 14.69 0.00 41.06 2.12
342 343 8.824159 TCATTAGCTCTAGATCAAGCAAATAC 57.176 34.615 14.69 0.00 41.06 1.89
343 344 8.093307 CCTCATTAGCTCTAGATCAAGCAAATA 58.907 37.037 14.69 0.00 41.06 1.40
344 345 6.935771 CCTCATTAGCTCTAGATCAAGCAAAT 59.064 38.462 14.69 0.71 41.06 2.32
345 346 6.126940 ACCTCATTAGCTCTAGATCAAGCAAA 60.127 38.462 14.69 2.87 41.06 3.68
346 347 5.365025 ACCTCATTAGCTCTAGATCAAGCAA 59.635 40.000 14.69 8.76 41.06 3.91
347 348 4.898265 ACCTCATTAGCTCTAGATCAAGCA 59.102 41.667 14.69 0.00 41.06 3.91
348 349 5.467035 ACCTCATTAGCTCTAGATCAAGC 57.533 43.478 0.00 6.65 38.84 4.01
349 350 5.047377 GGGACCTCATTAGCTCTAGATCAAG 60.047 48.000 0.00 0.00 0.00 3.02
350 351 4.835615 GGGACCTCATTAGCTCTAGATCAA 59.164 45.833 0.00 0.00 0.00 2.57
351 352 4.140924 TGGGACCTCATTAGCTCTAGATCA 60.141 45.833 0.00 0.00 0.00 2.92
352 353 4.411927 TGGGACCTCATTAGCTCTAGATC 58.588 47.826 0.00 0.00 0.00 2.75
353 354 4.477536 TGGGACCTCATTAGCTCTAGAT 57.522 45.455 0.00 0.00 0.00 1.98
354 355 3.961408 GTTGGGACCTCATTAGCTCTAGA 59.039 47.826 0.00 0.00 0.00 2.43
355 356 3.706594 TGTTGGGACCTCATTAGCTCTAG 59.293 47.826 0.00 0.00 0.00 2.43
356 357 3.719871 TGTTGGGACCTCATTAGCTCTA 58.280 45.455 0.00 0.00 0.00 2.43
357 358 2.551270 TGTTGGGACCTCATTAGCTCT 58.449 47.619 0.00 0.00 0.00 4.09
358 359 3.209410 CATGTTGGGACCTCATTAGCTC 58.791 50.000 0.00 0.00 0.00 4.09
359 360 2.092212 CCATGTTGGGACCTCATTAGCT 60.092 50.000 0.00 0.00 32.67 3.32
360 361 2.301346 CCATGTTGGGACCTCATTAGC 58.699 52.381 0.00 0.00 32.67 3.09
361 362 3.652057 ACCATGTTGGGACCTCATTAG 57.348 47.619 0.00 0.00 43.37 1.73
362 363 4.476846 ACATACCATGTTGGGACCTCATTA 59.523 41.667 0.00 0.00 43.37 1.90
363 364 3.269381 ACATACCATGTTGGGACCTCATT 59.731 43.478 0.00 0.00 43.37 2.57
364 365 2.852449 ACATACCATGTTGGGACCTCAT 59.148 45.455 0.00 0.00 43.37 2.90
365 366 2.238646 GACATACCATGTTGGGACCTCA 59.761 50.000 0.00 0.00 45.03 3.86
366 367 2.505819 AGACATACCATGTTGGGACCTC 59.494 50.000 0.00 0.00 45.03 3.85
367 368 2.505819 GAGACATACCATGTTGGGACCT 59.494 50.000 0.00 0.00 45.03 3.85
368 369 2.505819 AGAGACATACCATGTTGGGACC 59.494 50.000 0.00 0.00 45.03 4.46
369 370 3.914426 AGAGACATACCATGTTGGGAC 57.086 47.619 0.00 0.00 45.03 4.46
370 371 4.927267 AAAGAGACATACCATGTTGGGA 57.073 40.909 0.00 0.00 45.03 4.37
371 372 4.399303 GGAAAAGAGACATACCATGTTGGG 59.601 45.833 0.00 0.00 45.03 4.12
372 373 5.256474 AGGAAAAGAGACATACCATGTTGG 58.744 41.667 0.00 0.00 45.03 3.77
373 374 6.207417 ACAAGGAAAAGAGACATACCATGTTG 59.793 38.462 0.00 0.00 45.03 3.33
374 375 6.207417 CACAAGGAAAAGAGACATACCATGTT 59.793 38.462 0.00 0.00 45.03 2.71
376 377 5.392380 GCACAAGGAAAAGAGACATACCATG 60.392 44.000 0.00 0.00 0.00 3.66
377 378 4.702131 GCACAAGGAAAAGAGACATACCAT 59.298 41.667 0.00 0.00 0.00 3.55
378 379 4.072131 GCACAAGGAAAAGAGACATACCA 58.928 43.478 0.00 0.00 0.00 3.25
379 380 3.125316 CGCACAAGGAAAAGAGACATACC 59.875 47.826 0.00 0.00 0.00 2.73
380 381 3.424962 GCGCACAAGGAAAAGAGACATAC 60.425 47.826 0.30 0.00 0.00 2.39
381 382 2.742053 GCGCACAAGGAAAAGAGACATA 59.258 45.455 0.30 0.00 0.00 2.29
382 383 1.537202 GCGCACAAGGAAAAGAGACAT 59.463 47.619 0.30 0.00 0.00 3.06
383 384 0.944386 GCGCACAAGGAAAAGAGACA 59.056 50.000 0.30 0.00 0.00 3.41
384 385 0.944386 TGCGCACAAGGAAAAGAGAC 59.056 50.000 5.66 0.00 0.00 3.36
385 386 1.536766 CATGCGCACAAGGAAAAGAGA 59.463 47.619 14.90 0.00 0.00 3.10
386 387 1.536766 TCATGCGCACAAGGAAAAGAG 59.463 47.619 14.90 0.00 0.00 2.85
387 388 1.603456 TCATGCGCACAAGGAAAAGA 58.397 45.000 14.90 0.00 0.00 2.52
388 389 2.420628 TTCATGCGCACAAGGAAAAG 57.579 45.000 14.90 0.00 0.00 2.27
389 390 3.383620 AATTCATGCGCACAAGGAAAA 57.616 38.095 14.90 0.00 30.11 2.29
390 391 3.383620 AAATTCATGCGCACAAGGAAA 57.616 38.095 14.90 0.88 30.11 3.13
391 392 3.058450 CAAAATTCATGCGCACAAGGAA 58.942 40.909 14.90 15.03 0.00 3.36
392 393 2.609984 CCAAAATTCATGCGCACAAGGA 60.610 45.455 14.90 5.38 0.00 3.36
393 394 1.727880 CCAAAATTCATGCGCACAAGG 59.272 47.619 14.90 2.50 0.00 3.61
394 395 2.674954 TCCAAAATTCATGCGCACAAG 58.325 42.857 14.90 6.04 0.00 3.16
395 396 2.799412 GTTCCAAAATTCATGCGCACAA 59.201 40.909 14.90 9.56 0.00 3.33
396 397 2.402305 GTTCCAAAATTCATGCGCACA 58.598 42.857 14.90 0.00 0.00 4.57
397 398 1.386412 CGTTCCAAAATTCATGCGCAC 59.614 47.619 14.90 0.00 0.00 5.34
398 399 1.268079 TCGTTCCAAAATTCATGCGCA 59.732 42.857 14.96 14.96 0.00 6.09
399 400 1.913403 CTCGTTCCAAAATTCATGCGC 59.087 47.619 0.00 0.00 0.00 6.09
400 401 2.095263 ACCTCGTTCCAAAATTCATGCG 60.095 45.455 0.00 0.00 0.00 4.73
401 402 3.244976 CACCTCGTTCCAAAATTCATGC 58.755 45.455 0.00 0.00 0.00 4.06
402 403 4.023279 TCACACCTCGTTCCAAAATTCATG 60.023 41.667 0.00 0.00 0.00 3.07
403 404 4.023193 GTCACACCTCGTTCCAAAATTCAT 60.023 41.667 0.00 0.00 0.00 2.57
404 405 3.314080 GTCACACCTCGTTCCAAAATTCA 59.686 43.478 0.00 0.00 0.00 2.57
405 406 3.304458 GGTCACACCTCGTTCCAAAATTC 60.304 47.826 0.00 0.00 34.73 2.17
406 407 2.621526 GGTCACACCTCGTTCCAAAATT 59.378 45.455 0.00 0.00 34.73 1.82
407 408 2.227194 GGTCACACCTCGTTCCAAAAT 58.773 47.619 0.00 0.00 34.73 1.82
408 409 1.670791 GGTCACACCTCGTTCCAAAA 58.329 50.000 0.00 0.00 34.73 2.44
409 410 0.531090 CGGTCACACCTCGTTCCAAA 60.531 55.000 0.00 0.00 35.66 3.28
410 411 1.068417 CGGTCACACCTCGTTCCAA 59.932 57.895 0.00 0.00 35.66 3.53
411 412 2.129146 ACGGTCACACCTCGTTCCA 61.129 57.895 0.00 0.00 35.66 3.53
412 413 1.663702 CACGGTCACACCTCGTTCC 60.664 63.158 0.00 0.00 35.66 3.62
413 414 1.066918 ACACGGTCACACCTCGTTC 59.933 57.895 0.00 0.00 35.66 3.95
414 415 1.227147 CACACGGTCACACCTCGTT 60.227 57.895 0.00 0.00 35.66 3.85
415 416 2.071844 CTCACACGGTCACACCTCGT 62.072 60.000 0.00 0.00 35.66 4.18
416 417 1.371758 CTCACACGGTCACACCTCG 60.372 63.158 0.00 0.00 35.66 4.63
417 418 0.318784 GACTCACACGGTCACACCTC 60.319 60.000 0.00 0.00 35.66 3.85
418 419 1.740285 GACTCACACGGTCACACCT 59.260 57.895 0.00 0.00 35.66 4.00
419 420 1.660575 CGACTCACACGGTCACACC 60.661 63.158 0.00 0.00 33.73 4.16
420 421 0.933509 GTCGACTCACACGGTCACAC 60.934 60.000 8.70 0.00 33.73 3.82
421 422 1.099295 AGTCGACTCACACGGTCACA 61.099 55.000 13.58 0.00 33.73 3.58
422 423 0.030369 AAGTCGACTCACACGGTCAC 59.970 55.000 20.33 0.00 33.73 3.67
423 424 0.742505 AAAGTCGACTCACACGGTCA 59.257 50.000 20.33 0.00 33.73 4.02
424 425 1.849097 AAAAGTCGACTCACACGGTC 58.151 50.000 20.33 0.00 0.00 4.79
425 426 2.199236 GAAAAAGTCGACTCACACGGT 58.801 47.619 20.33 0.00 0.00 4.83
426 427 2.198406 TGAAAAAGTCGACTCACACGG 58.802 47.619 20.33 0.00 0.00 4.94
427 428 4.026062 TGAATGAAAAAGTCGACTCACACG 60.026 41.667 20.33 0.00 0.00 4.49
436 437 9.107367 GACAGAAGTAAATGAATGAAAAAGTCG 57.893 33.333 0.00 0.00 0.00 4.18
485 488 4.742012 TGGATGGAAGGACTAGAGGATAC 58.258 47.826 0.00 0.00 0.00 2.24
487 490 4.500389 ATGGATGGAAGGACTAGAGGAT 57.500 45.455 0.00 0.00 0.00 3.24
501 504 5.452776 CCCTTTGATTCACATGAATGGATGG 60.453 44.000 11.78 10.37 44.14 3.51
527 530 6.762187 TCAATTTTTACTCTACGGTGTTGTCA 59.238 34.615 0.00 0.00 0.00 3.58
531 534 8.441312 TTCTTCAATTTTTACTCTACGGTGTT 57.559 30.769 0.00 0.00 0.00 3.32
548 551 9.820725 TGTTCAAGTCAATTTTCATTCTTCAAT 57.179 25.926 0.00 0.00 0.00 2.57
557 560 6.169094 TGCCTTTTGTTCAAGTCAATTTTCA 58.831 32.000 0.00 0.00 0.00 2.69
558 561 6.660887 TGCCTTTTGTTCAAGTCAATTTTC 57.339 33.333 0.00 0.00 0.00 2.29
568 632 4.082679 AGTTACACGTTGCCTTTTGTTCAA 60.083 37.500 0.00 0.00 0.00 2.69
576 640 2.914695 TGGTAGTTACACGTTGCCTT 57.085 45.000 0.00 0.00 0.00 4.35
611 678 5.126384 GTGCAATACCCCAGCTTTATTTACA 59.874 40.000 0.00 0.00 0.00 2.41
623 690 2.830923 CCATTTGAAGTGCAATACCCCA 59.169 45.455 0.00 0.00 36.15 4.96
691 766 1.683917 AGCCCTAGTTGTGCTCTATCG 59.316 52.381 0.00 0.00 0.00 2.92
692 767 2.804933 GCAGCCCTAGTTGTGCTCTATC 60.805 54.545 1.26 0.00 31.77 2.08
787 867 2.177284 CCGGGCGTTTTAAAGGCG 59.823 61.111 14.75 9.08 42.87 5.52
841 922 2.693250 TTCTATCATCCGTGGGCGCG 62.693 60.000 0.00 0.00 36.67 6.86
920 1001 2.332063 ATGGATAGGTGCGACTTTGG 57.668 50.000 0.00 0.00 0.00 3.28
1011 1108 2.150837 GGCGTTGTCGTAGCTCGTC 61.151 63.158 0.00 0.00 40.80 4.20
1381 1486 2.561885 GTTCTGCTGCTGCTGCTG 59.438 61.111 27.67 26.32 40.48 4.41
1611 1716 1.442526 GACCCGATCATTGCTGCTGG 61.443 60.000 0.00 0.00 0.00 4.85
1726 1832 1.000827 GATCATCTCGTGTGAGGCGAT 60.001 52.381 0.00 0.00 42.79 4.58
1727 1833 0.382158 GATCATCTCGTGTGAGGCGA 59.618 55.000 0.00 0.00 42.79 5.54
1728 1834 0.101219 TGATCATCTCGTGTGAGGCG 59.899 55.000 0.00 0.00 42.79 5.52
1729 1835 2.299993 TTGATCATCTCGTGTGAGGC 57.700 50.000 0.00 0.00 42.79 4.70
1730 1836 4.034858 CCAATTTGATCATCTCGTGTGAGG 59.965 45.833 0.00 0.00 42.79 3.86
1731 1837 4.495349 GCCAATTTGATCATCTCGTGTGAG 60.495 45.833 0.00 0.00 43.99 3.51
1732 1838 3.374988 GCCAATTTGATCATCTCGTGTGA 59.625 43.478 0.00 0.00 0.00 3.58
1794 1900 6.156949 TGAAATCCTGCAAGAACCTAGACTAT 59.843 38.462 0.00 0.00 34.07 2.12
1807 1915 7.930325 TCAAACACATAAAATGAAATCCTGCAA 59.070 29.630 0.00 0.00 0.00 4.08
1844 1952 0.387239 CTGCAAACAAGCGGGTAAGC 60.387 55.000 0.00 0.00 37.24 3.09
1845 1953 0.951558 ACTGCAAACAAGCGGGTAAG 59.048 50.000 0.00 0.00 45.17 2.34
1912 2030 6.200097 GCACCAACTAAAACGAATCAACAAAT 59.800 34.615 0.00 0.00 0.00 2.32
1931 2049 7.121907 TCAATTATATACAACTTGCAGCACCAA 59.878 33.333 0.00 0.00 0.00 3.67
1948 2066 8.455903 AGCGCCTAATGCATTATCAATTATAT 57.544 30.769 19.17 0.00 41.33 0.86
1949 2067 7.864108 AGCGCCTAATGCATTATCAATTATA 57.136 32.000 19.17 0.00 41.33 0.98
1950 2068 6.764308 AGCGCCTAATGCATTATCAATTAT 57.236 33.333 19.17 1.05 41.33 1.28
1952 2070 5.009911 TCAAGCGCCTAATGCATTATCAATT 59.990 36.000 19.17 8.49 41.33 2.32
1954 2072 3.882288 TCAAGCGCCTAATGCATTATCAA 59.118 39.130 19.17 0.00 41.33 2.57
1955 2073 3.475575 TCAAGCGCCTAATGCATTATCA 58.524 40.909 19.17 0.00 41.33 2.15
1957 2075 5.009911 TCAATTCAAGCGCCTAATGCATTAT 59.990 36.000 19.17 1.63 41.33 1.28
2026 2162 2.510382 AGTGGAGTCCAGCTAGCTAGTA 59.490 50.000 18.86 2.55 32.34 1.82
2043 2182 2.680312 ACACGATGAGAATGGAGTGG 57.320 50.000 0.00 0.00 34.28 4.00
2047 2186 3.457234 GCATGTACACGATGAGAATGGA 58.543 45.455 0.00 0.00 0.00 3.41
2048 2187 2.219445 CGCATGTACACGATGAGAATGG 59.781 50.000 0.00 0.00 0.00 3.16
2049 2188 3.115554 TCGCATGTACACGATGAGAATG 58.884 45.455 0.00 0.00 32.45 2.67
2050 2189 3.436700 TCGCATGTACACGATGAGAAT 57.563 42.857 0.00 0.00 32.45 2.40
2051 2190 2.921121 GTTCGCATGTACACGATGAGAA 59.079 45.455 9.11 9.19 37.31 2.87
2053 2192 1.588404 GGTTCGCATGTACACGATGAG 59.412 52.381 9.11 1.33 38.25 2.90
2054 2193 1.067495 TGGTTCGCATGTACACGATGA 60.067 47.619 9.11 0.00 38.25 2.92
2055 2194 1.060553 GTGGTTCGCATGTACACGATG 59.939 52.381 9.11 0.22 38.25 3.84
2056 2195 1.067142 AGTGGTTCGCATGTACACGAT 60.067 47.619 9.11 0.00 38.25 3.73
2080 2231 7.278868 CGACATTCTTAATTTCTTGGAGTAGCT 59.721 37.037 0.00 0.00 0.00 3.32
2081 2232 7.064728 ACGACATTCTTAATTTCTTGGAGTAGC 59.935 37.037 0.00 0.00 0.00 3.58
2082 2233 8.480643 ACGACATTCTTAATTTCTTGGAGTAG 57.519 34.615 0.00 0.00 0.00 2.57
2084 2235 9.449719 AATACGACATTCTTAATTTCTTGGAGT 57.550 29.630 0.00 0.00 0.00 3.85
2100 2251 5.026038 TCCGGTGGATTAAATACGACATT 57.974 39.130 0.00 0.00 0.00 2.71
2101 2252 4.675976 TCCGGTGGATTAAATACGACAT 57.324 40.909 0.00 0.00 0.00 3.06
2123 2275 5.768164 TGATCAAGCTGTAGATCACCGTATA 59.232 40.000 17.82 0.48 44.04 1.47
2177 2329 6.407074 GCAGGCCAACTATAAGAAGAGTAGAA 60.407 42.308 5.01 0.00 0.00 2.10
2182 2334 4.142609 TGCAGGCCAACTATAAGAAGAG 57.857 45.455 5.01 0.00 0.00 2.85
2184 2336 4.037208 CCATTGCAGGCCAACTATAAGAAG 59.963 45.833 5.01 0.00 35.99 2.85
2199 2351 2.652941 AATGCCGTAAACCATTGCAG 57.347 45.000 0.00 0.00 35.10 4.41
2204 2356 5.354234 CAGAAAGACTAATGCCGTAAACCAT 59.646 40.000 0.00 0.00 0.00 3.55
2207 2359 5.857822 ACAGAAAGACTAATGCCGTAAAC 57.142 39.130 0.00 0.00 0.00 2.01
2238 2394 1.997311 CCCTCATGGCTCAGGTCCA 60.997 63.158 0.00 0.00 38.09 4.02
2239 2395 2.750657 CCCCTCATGGCTCAGGTCC 61.751 68.421 0.00 0.00 0.00 4.46
2240 2396 2.750657 CCCCCTCATGGCTCAGGTC 61.751 68.421 0.00 0.00 0.00 3.85
2241 2397 2.693864 CCCCCTCATGGCTCAGGT 60.694 66.667 0.00 0.00 0.00 4.00
2248 2404 4.905456 TCTTAGTGTATAACCCCCTCATGG 59.095 45.833 0.00 0.00 0.00 3.66
2249 2405 6.464465 CCTTCTTAGTGTATAACCCCCTCATG 60.464 46.154 0.00 0.00 0.00 3.07
2250 2406 5.607171 CCTTCTTAGTGTATAACCCCCTCAT 59.393 44.000 0.00 0.00 0.00 2.90
2251 2407 4.966805 CCTTCTTAGTGTATAACCCCCTCA 59.033 45.833 0.00 0.00 0.00 3.86
2252 2408 5.070180 GTCCTTCTTAGTGTATAACCCCCTC 59.930 48.000 0.00 0.00 0.00 4.30
2253 2409 4.967442 GTCCTTCTTAGTGTATAACCCCCT 59.033 45.833 0.00 0.00 0.00 4.79
2311 2484 8.309656 AGATCGTGAGCAATATCATCAATTCTA 58.690 33.333 0.00 0.00 0.00 2.10
2313 2486 7.361889 AGATCGTGAGCAATATCATCAATTC 57.638 36.000 0.00 0.00 0.00 2.17
2315 2488 7.548427 CCTAAGATCGTGAGCAATATCATCAAT 59.452 37.037 0.00 0.00 0.00 2.57
2319 2492 6.352016 ACCTAAGATCGTGAGCAATATCAT 57.648 37.500 0.00 0.00 0.00 2.45
2325 2498 3.492656 GGCATACCTAAGATCGTGAGCAA 60.493 47.826 0.00 0.00 0.00 3.91
2345 2718 3.879892 CCCTTGAGTAATTAGCAGAAGGC 59.120 47.826 0.00 0.00 45.30 4.35
2346 2719 5.359194 TCCCTTGAGTAATTAGCAGAAGG 57.641 43.478 0.00 0.00 0.00 3.46
2358 2735 3.650942 ACCTGTTTGTGATCCCTTGAGTA 59.349 43.478 0.00 0.00 0.00 2.59
2390 2778 6.818644 TCCTAGTATTAGAAACTTGCTGCAAG 59.181 38.462 34.07 34.07 45.85 4.01
2396 2784 7.097834 ACTGTGTCCTAGTATTAGAAACTTGC 58.902 38.462 0.00 0.00 0.00 4.01
2410 2942 5.769162 GGGGTCTACTATTACTGTGTCCTAG 59.231 48.000 0.00 0.00 0.00 3.02
2411 2943 5.194334 TGGGGTCTACTATTACTGTGTCCTA 59.806 44.000 0.00 0.00 0.00 2.94
2412 2944 4.016851 TGGGGTCTACTATTACTGTGTCCT 60.017 45.833 0.00 0.00 0.00 3.85
2413 2945 4.284178 TGGGGTCTACTATTACTGTGTCC 58.716 47.826 0.00 0.00 0.00 4.02
2513 3045 9.607988 GTTTGGGAAGGAAGAAAAAGAAATAAA 57.392 29.630 0.00 0.00 0.00 1.40
2516 3048 7.194112 TGTTTGGGAAGGAAGAAAAAGAAAT 57.806 32.000 0.00 0.00 0.00 2.17
2518 3050 6.613153 TTGTTTGGGAAGGAAGAAAAAGAA 57.387 33.333 0.00 0.00 0.00 2.52
2519 3051 6.613153 TTTGTTTGGGAAGGAAGAAAAAGA 57.387 33.333 0.00 0.00 0.00 2.52
2520 3052 7.770433 AGATTTTGTTTGGGAAGGAAGAAAAAG 59.230 33.333 0.00 0.00 0.00 2.27
2525 3057 6.040842 CAGAAGATTTTGTTTGGGAAGGAAGA 59.959 38.462 0.00 0.00 0.00 2.87
2532 3064 7.201875 GGAGTAAACAGAAGATTTTGTTTGGGA 60.202 37.037 19.03 2.77 44.63 4.37
2592 3126 1.398692 AAGGAAAAAGCGAGCCAACA 58.601 45.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.