Multiple sequence alignment - TraesCS7A01G374400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G374400 chr7A 100.000 5613 0 0 1 5613 547141812 547147424 0.000000e+00 10366.0
1 TraesCS7A01G374400 chr7A 99.416 685 4 0 1 685 285422538 285423222 0.000000e+00 1243.0
2 TraesCS7A01G374400 chr7A 90.667 300 25 3 685 981 735815994 735815695 4.080000e-106 396.0
3 TraesCS7A01G374400 chr7A 94.595 148 6 2 4851 4996 66151425 66151572 1.570000e-55 228.0
4 TraesCS7A01G374400 chr7A 88.000 50 6 0 5552 5601 41460708 41460757 6.070000e-05 60.2
5 TraesCS7A01G374400 chr3D 95.682 1320 53 4 3535 4852 565147394 565148711 0.000000e+00 2119.0
6 TraesCS7A01G374400 chr3D 89.247 837 61 11 2516 3346 496064608 496063795 0.000000e+00 1020.0
7 TraesCS7A01G374400 chr3D 86.571 700 61 10 2654 3346 68435620 68434947 0.000000e+00 741.0
8 TraesCS7A01G374400 chr3D 91.160 362 20 9 5056 5407 38635961 38636320 1.090000e-131 481.0
9 TraesCS7A01G374400 chr3D 91.275 298 23 3 685 979 554725826 554726123 2.440000e-108 403.0
10 TraesCS7A01G374400 chr3D 85.185 270 21 10 2241 2506 529138303 529138049 5.580000e-65 259.0
11 TraesCS7A01G374400 chr3D 97.222 36 0 1 3474 3508 569331632 569331597 6.070000e-05 60.2
12 TraesCS7A01G374400 chr2B 95.547 1325 57 2 3530 4853 763429636 763430959 0.000000e+00 2119.0
13 TraesCS7A01G374400 chr2B 91.667 156 10 2 4851 5003 157270784 157270629 4.410000e-51 213.0
14 TraesCS7A01G374400 chr2B 90.184 163 12 3 4851 5010 184952771 184952932 5.700000e-50 209.0
15 TraesCS7A01G374400 chr2B 97.297 37 1 0 3472 3508 8637263 8637299 4.690000e-06 63.9
16 TraesCS7A01G374400 chr2B 89.362 47 5 0 3460 3506 764740840 764740794 6.070000e-05 60.2
17 TraesCS7A01G374400 chr2A 95.267 1331 60 3 3528 4857 538896933 538898261 0.000000e+00 2106.0
18 TraesCS7A01G374400 chr2A 98.705 695 9 0 1 695 756959702 756960396 0.000000e+00 1234.0
19 TraesCS7A01G374400 chr2A 99.122 683 6 0 1 683 642999726 642999044 0.000000e+00 1229.0
20 TraesCS7A01G374400 chr2A 85.714 266 29 6 2244 2506 706746685 706746944 7.170000e-69 272.0
21 TraesCS7A01G374400 chr2A 95.000 40 2 0 3467 3506 2922141 2922102 4.690000e-06 63.9
22 TraesCS7A01G374400 chr2A 95.122 41 0 2 3469 3508 398888436 398888397 4.690000e-06 63.9
23 TraesCS7A01G374400 chr5A 95.102 1327 63 2 3528 4853 618879604 618878279 0.000000e+00 2089.0
24 TraesCS7A01G374400 chr5A 98.977 684 7 0 1 684 572389749 572390432 0.000000e+00 1225.0
25 TraesCS7A01G374400 chr5A 82.138 683 94 16 2516 3194 321908897 321909555 1.370000e-155 560.0
26 TraesCS7A01G374400 chr5B 94.804 1328 62 3 3533 4853 629935747 629937074 0.000000e+00 2063.0
27 TraesCS7A01G374400 chr5B 89.084 1081 113 3 3776 4856 141774473 141773398 0.000000e+00 1338.0
28 TraesCS7A01G374400 chr5B 98.832 685 8 0 1 685 322874527 322875211 0.000000e+00 1221.0
29 TraesCS7A01G374400 chr5B 98.540 685 10 0 1 685 158792971 158793655 0.000000e+00 1210.0
30 TraesCS7A01G374400 chr5B 97.956 685 14 0 1 685 201877605 201876921 0.000000e+00 1188.0
31 TraesCS7A01G374400 chr5B 97.515 684 17 0 1 684 146876442 146875759 0.000000e+00 1170.0
32 TraesCS7A01G374400 chr5B 93.723 685 42 1 1 685 115387436 115388119 0.000000e+00 1026.0
33 TraesCS7A01G374400 chr5B 89.412 170 13 4 4851 5016 577516066 577516234 5.700000e-50 209.0
34 TraesCS7A01G374400 chr5B 79.787 282 43 11 705 976 609189140 609188863 5.740000e-45 193.0
35 TraesCS7A01G374400 chr5B 88.158 76 8 1 903 977 577854564 577854489 7.750000e-14 89.8
36 TraesCS7A01G374400 chr5B 87.500 72 9 0 904 975 419728844 419728773 3.600000e-12 84.2
37 TraesCS7A01G374400 chr5B 93.182 44 2 1 3466 3508 318169652 318169609 4.690000e-06 63.9
38 TraesCS7A01G374400 chr7B 94.646 1326 67 4 3529 4853 27961943 27960621 0.000000e+00 2052.0
39 TraesCS7A01G374400 chr7B 98.832 685 6 1 1 685 94191418 94190736 0.000000e+00 1219.0
40 TraesCS7A01G374400 chr1A 92.456 1246 78 7 985 2224 530736636 530737871 0.000000e+00 1766.0
41 TraesCS7A01G374400 chr1A 86.212 1262 153 9 985 2242 530753631 530754875 0.000000e+00 1347.0
42 TraesCS7A01G374400 chr1A 92.993 685 47 1 1 685 159075474 159074791 0.000000e+00 998.0
43 TraesCS7A01G374400 chr1A 92.847 685 48 1 1 685 139630071 139630754 0.000000e+00 992.0
44 TraesCS7A01G374400 chr1A 85.298 687 93 7 1 683 423903643 423902961 0.000000e+00 702.0
45 TraesCS7A01G374400 chr1A 84.971 692 97 6 1 689 423674788 423675475 0.000000e+00 695.0
46 TraesCS7A01G374400 chr1A 83.837 563 85 5 2 561 99294634 99294075 1.070000e-146 531.0
47 TraesCS7A01G374400 chr1A 83.929 560 84 5 2 558 548281635 548282191 1.070000e-146 531.0
48 TraesCS7A01G374400 chr1A 89.019 428 28 11 5002 5412 530740312 530740737 3.880000e-141 512.0
49 TraesCS7A01G374400 chr1A 82.222 450 74 6 1 447 465330371 465330817 3.170000e-102 383.0
50 TraesCS7A01G374400 chr1A 89.209 278 17 4 2242 2506 387860341 387860064 9.010000e-88 335.0
51 TraesCS7A01G374400 chr1A 92.254 142 11 0 5411 5552 530741232 530741373 9.540000e-48 202.0
52 TraesCS7A01G374400 chr1A 90.780 141 13 0 2241 2381 486571759 486571899 7.420000e-44 189.0
53 TraesCS7A01G374400 chr1A 92.481 133 6 2 3345 3474 530754877 530755008 2.670000e-43 187.0
54 TraesCS7A01G374400 chr1A 95.690 116 4 1 3359 3474 530737885 530737999 9.600000e-43 185.0
55 TraesCS7A01G374400 chr1A 88.966 145 16 0 2237 2381 549140566 549140710 4.470000e-41 180.0
56 TraesCS7A01G374400 chr1A 72.593 405 97 13 3 400 336139689 336140086 2.750000e-23 121.0
57 TraesCS7A01G374400 chr1A 98.361 61 1 0 625 685 449836249 449836309 2.140000e-19 108.0
58 TraesCS7A01G374400 chr1A 96.774 62 1 1 625 685 548282280 548282341 9.950000e-18 102.0
59 TraesCS7A01G374400 chr1A 94.340 53 3 0 5002 5054 530755021 530755073 1.300000e-11 82.4
60 TraesCS7A01G374400 chr1A 97.222 36 1 0 3473 3508 588911843 588911808 1.690000e-05 62.1
61 TraesCS7A01G374400 chr7D 91.984 1260 93 5 3597 4856 509519141 509517890 0.000000e+00 1760.0
62 TraesCS7A01G374400 chr7D 84.772 834 96 18 2516 3343 538494938 538495746 0.000000e+00 808.0
63 TraesCS7A01G374400 chr7D 91.781 365 28 2 2516 2880 250316636 250316274 1.800000e-139 507.0
64 TraesCS7A01G374400 chr7D 91.667 156 10 2 4851 5003 102575557 102575712 4.410000e-51 213.0
65 TraesCS7A01G374400 chr7D 97.297 37 1 0 3472 3508 628522544 628522580 4.690000e-06 63.9
66 TraesCS7A01G374400 chr1B 91.984 1260 68 6 985 2244 583693793 583695019 0.000000e+00 1736.0
67 TraesCS7A01G374400 chr1B 86.619 1263 139 14 991 2243 583735573 583736815 0.000000e+00 1369.0
68 TraesCS7A01G374400 chr1B 99.124 685 5 1 1 685 56993123 56993806 0.000000e+00 1230.0
69 TraesCS7A01G374400 chr1B 98.832 685 8 0 1 685 101139298 101139982 0.000000e+00 1221.0
70 TraesCS7A01G374400 chr1B 97.953 684 12 2 1 684 520397365 520398046 0.000000e+00 1184.0
71 TraesCS7A01G374400 chr1B 86.215 827 74 16 2520 3343 653893977 653894766 0.000000e+00 859.0
72 TraesCS7A01G374400 chr1B 90.833 360 23 6 5056 5409 539573785 539574140 1.830000e-129 473.0
73 TraesCS7A01G374400 chr1B 97.059 136 4 0 3343 3478 583695017 583695152 4.370000e-56 230.0
74 TraesCS7A01G374400 chr1B 83.784 259 21 10 2254 2505 654859250 654859006 5.660000e-55 226.0
75 TraesCS7A01G374400 chr1B 93.960 149 6 3 4851 4996 416773363 416773511 7.320000e-54 222.0
76 TraesCS7A01G374400 chr1B 94.656 131 6 1 3348 3478 583736819 583736948 9.540000e-48 202.0
77 TraesCS7A01G374400 chr1B 96.667 60 2 0 4995 5054 583695151 583695210 3.580000e-17 100.0
78 TraesCS7A01G374400 chr1B 89.474 76 7 1 5473 5547 583695700 583695775 1.660000e-15 95.3
79 TraesCS7A01G374400 chr1B 94.643 56 1 2 925 979 540312657 540312711 1.000000e-12 86.1
80 TraesCS7A01G374400 chr1D 94.192 1102 53 6 1145 2244 432213839 432214931 0.000000e+00 1670.0
81 TraesCS7A01G374400 chr1D 85.929 1265 158 9 985 2244 432308312 432309561 0.000000e+00 1332.0
82 TraesCS7A01G374400 chr1D 89.436 833 63 4 2516 3343 442054514 442055326 0.000000e+00 1027.0
83 TraesCS7A01G374400 chr1D 88.636 836 68 9 2516 3345 332942791 332941977 0.000000e+00 992.0
84 TraesCS7A01G374400 chr1D 93.333 330 22 0 2516 2845 441187943 441187614 6.540000e-134 488.0
85 TraesCS7A01G374400 chr1D 89.855 276 15 4 2244 2506 442053112 442053387 5.380000e-90 342.0
86 TraesCS7A01G374400 chr1D 89.247 279 16 7 2241 2506 332944185 332943908 2.510000e-88 337.0
87 TraesCS7A01G374400 chr1D 88.849 278 18 5 2242 2506 441189340 441189063 4.190000e-86 329.0
88 TraesCS7A01G374400 chr1D 88.768 276 18 2 2244 2506 333493000 333493275 5.420000e-85 326.0
89 TraesCS7A01G374400 chr1D 93.939 198 6 1 985 1182 432213650 432213841 1.530000e-75 294.0
90 TraesCS7A01G374400 chr1D 86.022 279 26 2 2241 2506 470627092 470627370 2.560000e-73 287.0
91 TraesCS7A01G374400 chr1D 94.853 136 5 2 3343 3478 432214929 432215062 1.580000e-50 211.0
92 TraesCS7A01G374400 chr1D 94.355 124 7 0 2383 2506 225398702 225398825 2.060000e-44 191.0
93 TraesCS7A01G374400 chr1D 87.586 145 9 5 3343 3479 432309559 432309702 5.820000e-35 159.0
94 TraesCS7A01G374400 chr1D 72.834 427 100 14 3 421 3171859 3171441 1.270000e-26 132.0
95 TraesCS7A01G374400 chr1D 78.621 145 29 2 257 400 21634496 21634353 1.660000e-15 95.3
96 TraesCS7A01G374400 chr1D 77.778 162 28 8 242 399 9431500 9431657 5.990000e-15 93.5
97 TraesCS7A01G374400 chr1D 96.364 55 2 0 5002 5056 432215065 432215119 2.150000e-14 91.6
98 TraesCS7A01G374400 chr1D 78.571 126 25 2 290 414 467040691 467040567 1.300000e-11 82.4
99 TraesCS7A01G374400 chr6B 95.540 1009 42 3 3534 4540 35707071 35706064 0.000000e+00 1611.0
100 TraesCS7A01G374400 chr6B 99.414 683 4 0 1 683 341510879 341511561 0.000000e+00 1240.0
101 TraesCS7A01G374400 chr6B 98.977 684 7 0 1 684 425575405 425574722 0.000000e+00 1225.0
102 TraesCS7A01G374400 chr6B 98.540 685 10 0 1 685 352240582 352239898 0.000000e+00 1210.0
103 TraesCS7A01G374400 chr6B 98.678 681 9 0 1 681 383315268 383315948 0.000000e+00 1208.0
104 TraesCS7A01G374400 chr4A 99.270 685 5 0 1 685 14747854 14748538 0.000000e+00 1238.0
105 TraesCS7A01G374400 chr4A 90.054 372 25 6 5056 5415 648785842 648785471 6.580000e-129 472.0
106 TraesCS7A01G374400 chr4A 90.027 371 21 11 5056 5412 108368622 108368990 3.060000e-127 466.0
107 TraesCS7A01G374400 chr4A 89.812 373 24 8 5056 5415 211068807 211068436 3.060000e-127 466.0
108 TraesCS7A01G374400 chr4A 90.000 370 23 9 5056 5415 662094365 662094000 3.060000e-127 466.0
109 TraesCS7A01G374400 chr4A 89.434 265 25 1 2242 2506 553467168 553466907 1.170000e-86 331.0
110 TraesCS7A01G374400 chr3A 99.123 684 6 0 1 684 547563661 547562978 0.000000e+00 1230.0
111 TraesCS7A01G374400 chr3A 97.368 38 0 1 3471 3508 33130977 33131013 4.690000e-06 63.9
112 TraesCS7A01G374400 chr4B 98.832 685 8 0 1 685 482112955 482112271 0.000000e+00 1221.0
113 TraesCS7A01G374400 chr4B 98.097 683 13 0 1 683 134369896 134370578 0.000000e+00 1190.0
114 TraesCS7A01G374400 chr4B 93.139 685 46 1 1 685 590055406 590054723 0.000000e+00 1003.0
115 TraesCS7A01G374400 chr4B 83.493 836 113 17 2516 3343 16020838 16021656 0.000000e+00 756.0
116 TraesCS7A01G374400 chr4B 86.311 694 88 7 1 690 3869773 3869083 0.000000e+00 749.0
117 TraesCS7A01G374400 chr4B 82.854 834 122 15 2516 3343 16043190 16044008 0.000000e+00 728.0
118 TraesCS7A01G374400 chr4B 90.959 365 24 6 5056 5412 667349190 667349553 3.040000e-132 483.0
119 TraesCS7A01G374400 chr6A 98.246 684 12 0 1 684 132360342 132359659 0.000000e+00 1197.0
120 TraesCS7A01G374400 chr6A 86.047 688 88 7 1 684 93415674 93414991 0.000000e+00 732.0
121 TraesCS7A01G374400 chr6A 85.838 692 85 12 1 685 46061506 46062191 0.000000e+00 723.0
122 TraesCS7A01G374400 chr6A 90.782 358 22 7 5059 5409 121746421 121746774 8.510000e-128 468.0
123 TraesCS7A01G374400 chr6A 81.661 289 29 13 2237 2506 436116586 436116869 9.470000e-53 219.0
124 TraesCS7A01G374400 chr6A 83.700 227 23 8 2291 2506 481341782 481342005 9.540000e-48 202.0
125 TraesCS7A01G374400 chr6A 98.361 61 1 0 625 685 85579547 85579487 2.140000e-19 108.0
126 TraesCS7A01G374400 chr6A 98.361 61 1 0 625 685 117719944 117719884 2.140000e-19 108.0
127 TraesCS7A01G374400 chr6A 95.161 62 3 0 5552 5613 100057 99996 1.290000e-16 99.0
128 TraesCS7A01G374400 chr5D 89.138 847 59 12 2516 3349 104149710 104148884 0.000000e+00 1024.0
129 TraesCS7A01G374400 chr5D 87.288 708 63 11 2646 3348 250612535 250613220 0.000000e+00 784.0
130 TraesCS7A01G374400 chr5D 90.429 303 25 4 685 983 394115121 394114819 4.080000e-106 396.0
131 TraesCS7A01G374400 chr5D 90.816 294 22 5 685 974 408218447 408218155 6.820000e-104 388.0
132 TraesCS7A01G374400 chr5D 90.706 269 20 3 2242 2506 104151005 104150738 2.490000e-93 353.0
133 TraesCS7A01G374400 chr5D 89.362 282 14 9 2238 2506 530834330 530834052 1.940000e-89 340.0
134 TraesCS7A01G374400 chr5D 87.727 220 14 4 2300 2506 250602732 250602951 1.560000e-60 244.0
135 TraesCS7A01G374400 chr5D 90.184 163 12 3 4851 5009 322385081 322384919 5.700000e-50 209.0
136 TraesCS7A01G374400 chr5D 91.379 58 5 0 628 685 439289868 439289925 4.660000e-11 80.5
137 TraesCS7A01G374400 chr6D 88.849 843 63 8 2516 3347 163341968 163341146 0.000000e+00 1007.0
138 TraesCS7A01G374400 chr6D 88.623 835 66 11 2516 3343 377817658 377816846 0.000000e+00 989.0
139 TraesCS7A01G374400 chr6D 86.842 836 77 12 2516 3346 121817763 121818570 0.000000e+00 904.0
140 TraesCS7A01G374400 chr6D 90.288 278 14 4 2242 2506 163345092 163344815 8.950000e-93 351.0
141 TraesCS7A01G374400 chr6D 89.568 278 16 4 2242 2506 121816359 121816636 1.940000e-89 340.0
142 TraesCS7A01G374400 chr6D 87.814 279 21 4 2241 2506 460293585 460293863 1.170000e-81 315.0
143 TraesCS7A01G374400 chr6D 89.370 254 18 7 2258 2506 377821765 377821516 1.520000e-80 311.0
144 TraesCS7A01G374400 chr6D 83.929 280 24 11 2241 2506 153301697 153301969 1.210000e-61 248.0
145 TraesCS7A01G374400 chr6D 83.214 280 29 8 2244 2506 424823274 424822996 2.020000e-59 241.0
146 TraesCS7A01G374400 chr6D 82.963 270 30 5 2250 2506 156573923 156574189 4.370000e-56 230.0
147 TraesCS7A01G374400 chr6D 82.796 279 19 11 2244 2506 368732467 368732732 7.320000e-54 222.0
148 TraesCS7A01G374400 chr6D 81.695 295 24 13 2242 2506 107938741 107938447 9.470000e-53 219.0
149 TraesCS7A01G374400 chr6D 81.522 276 29 10 2242 2506 457742250 457742514 2.050000e-49 207.0
150 TraesCS7A01G374400 chr6D 81.208 298 20 15 2242 2506 458332860 458332566 2.050000e-49 207.0
151 TraesCS7A01G374400 chr6D 84.091 220 20 6 2246 2451 372886443 372886661 1.230000e-46 198.0
152 TraesCS7A01G374400 chr6D 80.755 265 39 8 2244 2505 391857500 391857245 4.440000e-46 196.0
153 TraesCS7A01G374400 chr6D 90.909 143 13 0 2242 2384 68859538 68859396 5.740000e-45 193.0
154 TraesCS7A01G374400 chr6D 87.324 142 14 4 2245 2383 94749826 94749686 5.820000e-35 159.0
155 TraesCS7A01G374400 chr6D 81.604 212 19 12 2244 2439 269696495 269696288 2.090000e-34 158.0
156 TraesCS7A01G374400 chr6D 86.207 145 17 3 2240 2382 159519303 159519160 2.710000e-33 154.0
157 TraesCS7A01G374400 chr6D 86.765 136 16 2 2241 2375 38628775 38628641 3.500000e-32 150.0
158 TraesCS7A01G374400 chr6D 86.331 139 17 2 2238 2375 466252110 466252247 3.500000e-32 150.0
159 TraesCS7A01G374400 chr6D 79.333 150 23 7 254 399 270116662 270116807 1.290000e-16 99.0
160 TraesCS7A01G374400 chr6D 79.646 113 21 2 335 446 254552971 254552860 4.660000e-11 80.5
161 TraesCS7A01G374400 chr6D 95.000 40 1 1 3473 3511 466552403 466552442 1.690000e-05 62.1
162 TraesCS7A01G374400 chr3B 83.652 838 107 17 2516 3345 465653623 465654438 0.000000e+00 761.0
163 TraesCS7A01G374400 chr3B 91.503 153 10 2 4851 5000 745447782 745447934 2.050000e-49 207.0
164 TraesCS7A01G374400 chr3B 83.051 177 22 7 695 863 615720406 615720582 2.710000e-33 154.0
165 TraesCS7A01G374400 chr3B 85.507 69 7 2 903 971 11580063 11580128 1.010000e-07 69.4
166 TraesCS7A01G374400 chrUn 86.067 689 88 8 1 685 277776728 277777412 0.000000e+00 734.0
167 TraesCS7A01G374400 chrUn 82.370 709 95 21 2 684 7548834 7548130 1.740000e-164 590.0
168 TraesCS7A01G374400 chrUn 83.556 225 25 8 2292 2506 28752392 28752170 3.430000e-47 200.0
169 TraesCS7A01G374400 chr4D 90.775 271 18 4 2242 2506 394958207 394957938 6.920000e-94 355.0
170 TraesCS7A01G374400 chr4D 86.594 276 21 9 2244 2506 37496769 37497041 1.980000e-74 291.0
171 TraesCS7A01G374400 chr4D 85.663 279 20 7 2241 2503 314674711 314674985 5.540000e-70 276.0
172 TraesCS7A01G374400 chr4D 81.229 293 23 15 2241 2503 487284281 487284571 2.050000e-49 207.0
173 TraesCS7A01G374400 chr4D 75.391 447 98 11 2 442 419195929 419196369 7.370000e-49 206.0
174 TraesCS7A01G374400 chr4D 89.855 138 13 1 2244 2381 426600302 426600438 5.780000e-40 176.0
175 TraesCS7A01G374400 chr4D 79.730 148 28 2 254 400 50030872 50031018 7.690000e-19 106.0
176 TraesCS7A01G374400 chr4D 77.987 159 29 6 245 400 102403024 102403179 1.660000e-15 95.3
177 TraesCS7A01G374400 chr4D 78.049 164 26 9 242 400 506267233 506267391 1.660000e-15 95.3
178 TraesCS7A01G374400 chr4D 79.259 135 26 2 278 411 399171504 399171637 5.990000e-15 93.5
179 TraesCS7A01G374400 chr4D 91.803 61 5 0 627 687 43361267 43361327 1.000000e-12 86.1
180 TraesCS7A01G374400 chr4D 97.778 45 1 0 640 684 50031254 50031298 1.680000e-10 78.7
181 TraesCS7A01G374400 chr4D 89.831 59 5 1 628 685 444518812 444518870 2.170000e-09 75.0
182 TraesCS7A01G374400 chr4D 89.796 49 5 0 3470 3518 441902961 441903009 4.690000e-06 63.9
183 TraesCS7A01G374400 chr2D 90.050 201 7 4 2319 2506 572705676 572705476 1.210000e-61 248.0
184 TraesCS7A01G374400 chr2D 87.778 180 13 7 4851 5021 46927559 46927380 9.540000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G374400 chr7A 547141812 547147424 5612 False 10366.000 10366 100.00000 1 5613 1 chr7A.!!$F4 5612
1 TraesCS7A01G374400 chr7A 285422538 285423222 684 False 1243.000 1243 99.41600 1 685 1 chr7A.!!$F3 684
2 TraesCS7A01G374400 chr3D 565147394 565148711 1317 False 2119.000 2119 95.68200 3535 4852 1 chr3D.!!$F3 1317
3 TraesCS7A01G374400 chr3D 496063795 496064608 813 True 1020.000 1020 89.24700 2516 3346 1 chr3D.!!$R2 830
4 TraesCS7A01G374400 chr3D 68434947 68435620 673 True 741.000 741 86.57100 2654 3346 1 chr3D.!!$R1 692
5 TraesCS7A01G374400 chr2B 763429636 763430959 1323 False 2119.000 2119 95.54700 3530 4853 1 chr2B.!!$F3 1323
6 TraesCS7A01G374400 chr2A 538896933 538898261 1328 False 2106.000 2106 95.26700 3528 4857 1 chr2A.!!$F1 1329
7 TraesCS7A01G374400 chr2A 756959702 756960396 694 False 1234.000 1234 98.70500 1 695 1 chr2A.!!$F3 694
8 TraesCS7A01G374400 chr2A 642999044 642999726 682 True 1229.000 1229 99.12200 1 683 1 chr2A.!!$R3 682
9 TraesCS7A01G374400 chr5A 618878279 618879604 1325 True 2089.000 2089 95.10200 3528 4853 1 chr5A.!!$R1 1325
10 TraesCS7A01G374400 chr5A 572389749 572390432 683 False 1225.000 1225 98.97700 1 684 1 chr5A.!!$F2 683
11 TraesCS7A01G374400 chr5A 321908897 321909555 658 False 560.000 560 82.13800 2516 3194 1 chr5A.!!$F1 678
12 TraesCS7A01G374400 chr5B 629935747 629937074 1327 False 2063.000 2063 94.80400 3533 4853 1 chr5B.!!$F5 1320
13 TraesCS7A01G374400 chr5B 141773398 141774473 1075 True 1338.000 1338 89.08400 3776 4856 1 chr5B.!!$R1 1080
14 TraesCS7A01G374400 chr5B 322874527 322875211 684 False 1221.000 1221 98.83200 1 685 1 chr5B.!!$F3 684
15 TraesCS7A01G374400 chr5B 158792971 158793655 684 False 1210.000 1210 98.54000 1 685 1 chr5B.!!$F2 684
16 TraesCS7A01G374400 chr5B 201876921 201877605 684 True 1188.000 1188 97.95600 1 685 1 chr5B.!!$R3 684
17 TraesCS7A01G374400 chr5B 146875759 146876442 683 True 1170.000 1170 97.51500 1 684 1 chr5B.!!$R2 683
18 TraesCS7A01G374400 chr5B 115387436 115388119 683 False 1026.000 1026 93.72300 1 685 1 chr5B.!!$F1 684
19 TraesCS7A01G374400 chr7B 27960621 27961943 1322 True 2052.000 2052 94.64600 3529 4853 1 chr7B.!!$R1 1324
20 TraesCS7A01G374400 chr7B 94190736 94191418 682 True 1219.000 1219 98.83200 1 685 1 chr7B.!!$R2 684
21 TraesCS7A01G374400 chr1A 159074791 159075474 683 True 998.000 998 92.99300 1 685 1 chr1A.!!$R2 684
22 TraesCS7A01G374400 chr1A 139630071 139630754 683 False 992.000 992 92.84700 1 685 1 chr1A.!!$F1 684
23 TraesCS7A01G374400 chr1A 423902961 423903643 682 True 702.000 702 85.29800 1 683 1 chr1A.!!$R4 682
24 TraesCS7A01G374400 chr1A 423674788 423675475 687 False 695.000 695 84.97100 1 689 1 chr1A.!!$F3 688
25 TraesCS7A01G374400 chr1A 530736636 530741373 4737 False 666.250 1766 92.35475 985 5552 4 chr1A.!!$F8 4567
26 TraesCS7A01G374400 chr1A 530753631 530755073 1442 False 538.800 1347 91.01100 985 5054 3 chr1A.!!$F9 4069
27 TraesCS7A01G374400 chr1A 99294075 99294634 559 True 531.000 531 83.83700 2 561 1 chr1A.!!$R1 559
28 TraesCS7A01G374400 chr1A 548281635 548282341 706 False 316.500 531 90.35150 2 685 2 chr1A.!!$F10 683
29 TraesCS7A01G374400 chr7D 509517890 509519141 1251 True 1760.000 1760 91.98400 3597 4856 1 chr7D.!!$R2 1259
30 TraesCS7A01G374400 chr7D 538494938 538495746 808 False 808.000 808 84.77200 2516 3343 1 chr7D.!!$F2 827
31 TraesCS7A01G374400 chr1B 56993123 56993806 683 False 1230.000 1230 99.12400 1 685 1 chr1B.!!$F1 684
32 TraesCS7A01G374400 chr1B 101139298 101139982 684 False 1221.000 1221 98.83200 1 685 1 chr1B.!!$F2 684
33 TraesCS7A01G374400 chr1B 520397365 520398046 681 False 1184.000 1184 97.95300 1 684 1 chr1B.!!$F4 683
34 TraesCS7A01G374400 chr1B 653893977 653894766 789 False 859.000 859 86.21500 2520 3343 1 chr1B.!!$F7 823
35 TraesCS7A01G374400 chr1B 583735573 583736948 1375 False 785.500 1369 90.63750 991 3478 2 chr1B.!!$F9 2487
36 TraesCS7A01G374400 chr1B 583693793 583695775 1982 False 540.325 1736 93.79600 985 5547 4 chr1B.!!$F8 4562
37 TraesCS7A01G374400 chr1D 432308312 432309702 1390 False 745.500 1332 86.75750 985 3479 2 chr1D.!!$F6 2494
38 TraesCS7A01G374400 chr1D 442053112 442055326 2214 False 684.500 1027 89.64550 2244 3343 2 chr1D.!!$F7 1099
39 TraesCS7A01G374400 chr1D 332941977 332944185 2208 True 664.500 992 88.94150 2241 3345 2 chr1D.!!$R4 1104
40 TraesCS7A01G374400 chr1D 432213650 432215119 1469 False 566.650 1670 94.83700 985 5056 4 chr1D.!!$F5 4071
41 TraesCS7A01G374400 chr1D 441187614 441189340 1726 True 408.500 488 91.09100 2242 2845 2 chr1D.!!$R5 603
42 TraesCS7A01G374400 chr6B 35706064 35707071 1007 True 1611.000 1611 95.54000 3534 4540 1 chr6B.!!$R1 1006
43 TraesCS7A01G374400 chr6B 341510879 341511561 682 False 1240.000 1240 99.41400 1 683 1 chr6B.!!$F1 682
44 TraesCS7A01G374400 chr6B 425574722 425575405 683 True 1225.000 1225 98.97700 1 684 1 chr6B.!!$R3 683
45 TraesCS7A01G374400 chr6B 352239898 352240582 684 True 1210.000 1210 98.54000 1 685 1 chr6B.!!$R2 684
46 TraesCS7A01G374400 chr6B 383315268 383315948 680 False 1208.000 1208 98.67800 1 681 1 chr6B.!!$F2 680
47 TraesCS7A01G374400 chr4A 14747854 14748538 684 False 1238.000 1238 99.27000 1 685 1 chr4A.!!$F1 684
48 TraesCS7A01G374400 chr3A 547562978 547563661 683 True 1230.000 1230 99.12300 1 684 1 chr3A.!!$R1 683
49 TraesCS7A01G374400 chr4B 482112271 482112955 684 True 1221.000 1221 98.83200 1 685 1 chr4B.!!$R2 684
50 TraesCS7A01G374400 chr4B 134369896 134370578 682 False 1190.000 1190 98.09700 1 683 1 chr4B.!!$F3 682
51 TraesCS7A01G374400 chr4B 590054723 590055406 683 True 1003.000 1003 93.13900 1 685 1 chr4B.!!$R3 684
52 TraesCS7A01G374400 chr4B 16020838 16021656 818 False 756.000 756 83.49300 2516 3343 1 chr4B.!!$F1 827
53 TraesCS7A01G374400 chr4B 3869083 3869773 690 True 749.000 749 86.31100 1 690 1 chr4B.!!$R1 689
54 TraesCS7A01G374400 chr4B 16043190 16044008 818 False 728.000 728 82.85400 2516 3343 1 chr4B.!!$F2 827
55 TraesCS7A01G374400 chr6A 132359659 132360342 683 True 1197.000 1197 98.24600 1 684 1 chr6A.!!$R5 683
56 TraesCS7A01G374400 chr6A 93414991 93415674 683 True 732.000 732 86.04700 1 684 1 chr6A.!!$R3 683
57 TraesCS7A01G374400 chr6A 46061506 46062191 685 False 723.000 723 85.83800 1 685 1 chr6A.!!$F1 684
58 TraesCS7A01G374400 chr5D 250612535 250613220 685 False 784.000 784 87.28800 2646 3348 1 chr5D.!!$F2 702
59 TraesCS7A01G374400 chr5D 104148884 104151005 2121 True 688.500 1024 89.92200 2242 3349 2 chr5D.!!$R5 1107
60 TraesCS7A01G374400 chr6D 163341146 163345092 3946 True 679.000 1007 89.56850 2242 3347 2 chr6D.!!$R11 1105
61 TraesCS7A01G374400 chr6D 377816846 377821765 4919 True 650.000 989 88.99650 2258 3343 2 chr6D.!!$R12 1085
62 TraesCS7A01G374400 chr6D 121816359 121818570 2211 False 622.000 904 88.20500 2242 3346 2 chr6D.!!$F10 1104
63 TraesCS7A01G374400 chr3B 465653623 465654438 815 False 761.000 761 83.65200 2516 3345 1 chr3B.!!$F2 829
64 TraesCS7A01G374400 chrUn 277776728 277777412 684 False 734.000 734 86.06700 1 685 1 chrUn.!!$F1 684
65 TraesCS7A01G374400 chrUn 7548130 7548834 704 True 590.000 590 82.37000 2 684 1 chrUn.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 791 0.038166 GGTGCTGGGACCAGATTTGA 59.962 55.0 22.03 0.0 46.30 2.69 F
799 830 0.111253 CCTTTGGGGAGTTCTGCACT 59.889 55.0 0.00 0.0 39.07 4.40 F
821 852 0.178992 TTTGAGGACTTGTGGGCAGG 60.179 55.0 0.00 0.0 0.00 4.85 F
1135 1166 0.320683 CCATGTCCTCGTGCAGAACA 60.321 55.0 0.00 0.0 0.00 3.18 F
2377 2455 0.321210 CCAATGCGCCGACCCATATA 60.321 55.0 4.18 0.0 0.00 0.86 F
2820 6902 0.038618 TGTTGACGTCCGATGAGTGG 60.039 55.0 14.12 0.0 0.00 4.00 F
3526 7692 0.038599 TCATGAATGCAGGTGCTGGT 59.961 50.0 3.18 0.0 42.66 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2272 2350 0.951558 AAGCTGACGAAATTGCCGTT 59.048 45.000 7.44 0.00 40.67 4.44 R
2788 6870 0.537188 GTCAACAGGGCAGCTAGCTA 59.463 55.000 18.86 0.00 44.79 3.32 R
2803 6885 1.589630 CCCACTCATCGGACGTCAA 59.410 57.895 18.91 4.99 0.00 3.18 R
2808 6890 1.745489 GTTGGCCCACTCATCGGAC 60.745 63.158 0.00 0.00 0.00 4.79 R
3511 7677 0.035630 AGAGACCAGCACCTGCATTC 60.036 55.000 0.00 0.00 45.16 2.67 R
4368 8536 0.914417 CAGGTGTACCATGGGAGGGT 60.914 60.000 18.09 0.00 42.48 4.34 R
4687 8855 1.071471 CAGAACAACCTCAGGCGGT 59.929 57.895 0.00 0.00 39.48 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
643 673 2.669569 GTGACGCTGCCATGTGGT 60.670 61.111 0.35 0.00 37.57 4.16
702 733 4.670227 AAAACTGCTCTGTTATCGCTTC 57.330 40.909 0.00 0.00 0.00 3.86
703 734 3.601443 AACTGCTCTGTTATCGCTTCT 57.399 42.857 0.00 0.00 0.00 2.85
704 735 3.601443 ACTGCTCTGTTATCGCTTCTT 57.399 42.857 0.00 0.00 0.00 2.52
705 736 4.720649 ACTGCTCTGTTATCGCTTCTTA 57.279 40.909 0.00 0.00 0.00 2.10
706 737 4.677584 ACTGCTCTGTTATCGCTTCTTAG 58.322 43.478 0.00 0.00 0.00 2.18
707 738 4.158764 ACTGCTCTGTTATCGCTTCTTAGT 59.841 41.667 0.00 0.00 0.00 2.24
708 739 5.073311 TGCTCTGTTATCGCTTCTTAGTT 57.927 39.130 0.00 0.00 0.00 2.24
709 740 5.479306 TGCTCTGTTATCGCTTCTTAGTTT 58.521 37.500 0.00 0.00 0.00 2.66
710 741 5.577164 TGCTCTGTTATCGCTTCTTAGTTTC 59.423 40.000 0.00 0.00 0.00 2.78
711 742 5.808030 GCTCTGTTATCGCTTCTTAGTTTCT 59.192 40.000 0.00 0.00 0.00 2.52
712 743 6.237701 GCTCTGTTATCGCTTCTTAGTTTCTG 60.238 42.308 0.00 0.00 0.00 3.02
713 744 6.688578 TCTGTTATCGCTTCTTAGTTTCTGT 58.311 36.000 0.00 0.00 0.00 3.41
714 745 7.152645 TCTGTTATCGCTTCTTAGTTTCTGTT 58.847 34.615 0.00 0.00 0.00 3.16
715 746 7.328737 TCTGTTATCGCTTCTTAGTTTCTGTTC 59.671 37.037 0.00 0.00 0.00 3.18
716 747 7.152645 TGTTATCGCTTCTTAGTTTCTGTTCT 58.847 34.615 0.00 0.00 0.00 3.01
717 748 8.301720 TGTTATCGCTTCTTAGTTTCTGTTCTA 58.698 33.333 0.00 0.00 0.00 2.10
718 749 8.800031 GTTATCGCTTCTTAGTTTCTGTTCTAG 58.200 37.037 0.00 0.00 0.00 2.43
719 750 6.570672 TCGCTTCTTAGTTTCTGTTCTAGA 57.429 37.500 0.00 0.00 0.00 2.43
720 751 6.380190 TCGCTTCTTAGTTTCTGTTCTAGAC 58.620 40.000 0.00 0.00 34.43 2.59
721 752 6.207025 TCGCTTCTTAGTTTCTGTTCTAGACT 59.793 38.462 0.00 0.00 34.43 3.24
722 753 6.864165 CGCTTCTTAGTTTCTGTTCTAGACTT 59.136 38.462 0.00 0.00 34.43 3.01
723 754 7.382759 CGCTTCTTAGTTTCTGTTCTAGACTTT 59.617 37.037 0.00 0.00 34.43 2.66
724 755 9.047371 GCTTCTTAGTTTCTGTTCTAGACTTTT 57.953 33.333 0.00 0.00 34.43 2.27
742 773 8.871686 AGACTTTTAAAACTTTGTAATGCTGG 57.128 30.769 0.00 0.00 0.00 4.85
743 774 8.474831 AGACTTTTAAAACTTTGTAATGCTGGT 58.525 29.630 0.00 0.00 0.00 4.00
744 775 8.419076 ACTTTTAAAACTTTGTAATGCTGGTG 57.581 30.769 0.00 0.00 0.00 4.17
745 776 6.836577 TTTAAAACTTTGTAATGCTGGTGC 57.163 33.333 0.00 0.00 40.20 5.01
746 777 4.670896 AAAACTTTGTAATGCTGGTGCT 57.329 36.364 0.00 0.00 40.48 4.40
747 778 3.648339 AACTTTGTAATGCTGGTGCTG 57.352 42.857 0.00 0.00 40.48 4.41
748 779 1.888512 ACTTTGTAATGCTGGTGCTGG 59.111 47.619 0.00 0.00 40.48 4.85
749 780 1.203052 CTTTGTAATGCTGGTGCTGGG 59.797 52.381 0.00 0.00 40.48 4.45
750 781 0.403655 TTGTAATGCTGGTGCTGGGA 59.596 50.000 0.00 0.00 40.48 4.37
751 782 0.322456 TGTAATGCTGGTGCTGGGAC 60.322 55.000 0.00 0.00 40.48 4.46
752 783 1.032114 GTAATGCTGGTGCTGGGACC 61.032 60.000 4.29 4.29 40.48 4.46
753 784 1.496444 TAATGCTGGTGCTGGGACCA 61.496 55.000 13.05 13.05 44.09 4.02
757 788 3.920817 TGGTGCTGGGACCAGATT 58.079 55.556 22.03 0.00 46.30 2.40
758 789 2.163454 TGGTGCTGGGACCAGATTT 58.837 52.632 22.03 0.00 46.30 2.17
759 790 0.251297 TGGTGCTGGGACCAGATTTG 60.251 55.000 22.03 0.00 46.30 2.32
760 791 0.038166 GGTGCTGGGACCAGATTTGA 59.962 55.000 22.03 0.00 46.30 2.69
761 792 1.457346 GTGCTGGGACCAGATTTGAG 58.543 55.000 22.03 0.00 46.30 3.02
762 793 0.322816 TGCTGGGACCAGATTTGAGC 60.323 55.000 22.03 6.07 46.30 4.26
763 794 1.034292 GCTGGGACCAGATTTGAGCC 61.034 60.000 22.03 0.00 46.30 4.70
764 795 0.394899 CTGGGACCAGATTTGAGCCC 60.395 60.000 13.06 6.47 46.30 5.19
765 796 1.139498 TGGGACCAGATTTGAGCCCA 61.139 55.000 10.70 10.70 41.89 5.36
766 797 0.394899 GGGACCAGATTTGAGCCCAG 60.395 60.000 8.05 0.00 37.40 4.45
767 798 0.394899 GGACCAGATTTGAGCCCAGG 60.395 60.000 0.00 0.00 0.00 4.45
768 799 1.000396 ACCAGATTTGAGCCCAGGC 60.000 57.895 0.00 0.00 42.33 4.85
769 800 1.755783 CCAGATTTGAGCCCAGGCC 60.756 63.158 4.70 0.00 43.17 5.19
770 801 1.305623 CAGATTTGAGCCCAGGCCT 59.694 57.895 0.00 0.00 43.17 5.19
771 802 0.324091 CAGATTTGAGCCCAGGCCTT 60.324 55.000 0.00 0.00 43.17 4.35
772 803 1.064463 CAGATTTGAGCCCAGGCCTTA 60.064 52.381 0.00 0.00 43.17 2.69
773 804 1.213926 AGATTTGAGCCCAGGCCTTAG 59.786 52.381 0.00 0.00 43.17 2.18
774 805 0.259938 ATTTGAGCCCAGGCCTTAGG 59.740 55.000 0.00 8.70 43.17 2.69
775 806 1.140134 TTTGAGCCCAGGCCTTAGGT 61.140 55.000 18.07 11.37 43.17 3.08
776 807 1.140134 TTGAGCCCAGGCCTTAGGTT 61.140 55.000 18.07 13.24 43.17 3.50
777 808 1.140134 TGAGCCCAGGCCTTAGGTTT 61.140 55.000 18.07 8.52 43.17 3.27
778 809 0.394488 GAGCCCAGGCCTTAGGTTTC 60.394 60.000 18.07 12.82 43.17 2.78
779 810 1.379977 GCCCAGGCCTTAGGTTTCC 60.380 63.158 18.07 0.20 34.56 3.13
780 811 1.306633 CCCAGGCCTTAGGTTTCCC 59.693 63.158 0.00 0.00 0.00 3.97
781 812 1.306633 CCAGGCCTTAGGTTTCCCC 59.693 63.158 0.00 0.00 0.00 4.81
783 814 0.704664 CAGGCCTTAGGTTTCCCCTT 59.295 55.000 0.00 0.00 42.73 3.95
784 815 1.077169 CAGGCCTTAGGTTTCCCCTTT 59.923 52.381 0.00 0.00 42.73 3.11
785 816 1.077169 AGGCCTTAGGTTTCCCCTTTG 59.923 52.381 0.00 0.00 42.73 2.77
786 817 1.557099 GCCTTAGGTTTCCCCTTTGG 58.443 55.000 0.00 0.00 42.73 3.28
798 829 2.646121 CCTTTGGGGAGTTCTGCAC 58.354 57.895 0.00 0.00 37.23 4.57
799 830 0.111253 CCTTTGGGGAGTTCTGCACT 59.889 55.000 0.00 0.00 39.07 4.40
800 831 1.242076 CTTTGGGGAGTTCTGCACTG 58.758 55.000 0.00 0.00 35.01 3.66
801 832 0.550914 TTTGGGGAGTTCTGCACTGT 59.449 50.000 0.00 0.00 35.01 3.55
802 833 0.550914 TTGGGGAGTTCTGCACTGTT 59.449 50.000 0.00 0.00 35.01 3.16
803 834 0.550914 TGGGGAGTTCTGCACTGTTT 59.449 50.000 0.00 0.00 35.01 2.83
804 835 1.064017 TGGGGAGTTCTGCACTGTTTT 60.064 47.619 0.00 0.00 35.01 2.43
805 836 1.338020 GGGGAGTTCTGCACTGTTTTG 59.662 52.381 0.00 0.00 35.01 2.44
806 837 2.297701 GGGAGTTCTGCACTGTTTTGA 58.702 47.619 0.00 0.00 35.01 2.69
807 838 2.291741 GGGAGTTCTGCACTGTTTTGAG 59.708 50.000 0.00 0.00 35.01 3.02
808 839 2.291741 GGAGTTCTGCACTGTTTTGAGG 59.708 50.000 0.00 0.00 35.01 3.86
809 840 3.206150 GAGTTCTGCACTGTTTTGAGGA 58.794 45.455 0.00 0.00 35.01 3.71
810 841 2.945668 AGTTCTGCACTGTTTTGAGGAC 59.054 45.455 0.00 0.00 32.83 3.85
811 842 2.945668 GTTCTGCACTGTTTTGAGGACT 59.054 45.455 0.00 0.00 0.00 3.85
812 843 3.281727 TCTGCACTGTTTTGAGGACTT 57.718 42.857 0.00 0.00 0.00 3.01
813 844 2.945008 TCTGCACTGTTTTGAGGACTTG 59.055 45.455 0.00 0.00 0.00 3.16
814 845 2.684881 CTGCACTGTTTTGAGGACTTGT 59.315 45.455 0.00 0.00 0.00 3.16
815 846 2.423185 TGCACTGTTTTGAGGACTTGTG 59.577 45.455 0.00 0.00 0.00 3.33
816 847 2.223572 GCACTGTTTTGAGGACTTGTGG 60.224 50.000 0.00 0.00 0.00 4.17
817 848 2.358898 CACTGTTTTGAGGACTTGTGGG 59.641 50.000 0.00 0.00 0.00 4.61
818 849 1.338020 CTGTTTTGAGGACTTGTGGGC 59.662 52.381 0.00 0.00 0.00 5.36
819 850 1.341482 TGTTTTGAGGACTTGTGGGCA 60.341 47.619 0.00 0.00 0.00 5.36
820 851 1.338020 GTTTTGAGGACTTGTGGGCAG 59.662 52.381 0.00 0.00 0.00 4.85
821 852 0.178992 TTTGAGGACTTGTGGGCAGG 60.179 55.000 0.00 0.00 0.00 4.85
822 853 2.067932 TTGAGGACTTGTGGGCAGGG 62.068 60.000 0.00 0.00 0.00 4.45
823 854 3.260100 AGGACTTGTGGGCAGGGG 61.260 66.667 0.00 0.00 0.00 4.79
824 855 3.256960 GGACTTGTGGGCAGGGGA 61.257 66.667 0.00 0.00 0.00 4.81
825 856 2.840753 GGACTTGTGGGCAGGGGAA 61.841 63.158 0.00 0.00 0.00 3.97
826 857 1.303643 GACTTGTGGGCAGGGGAAG 60.304 63.158 0.00 0.00 0.00 3.46
827 858 2.036256 CTTGTGGGCAGGGGAAGG 59.964 66.667 0.00 0.00 0.00 3.46
828 859 3.589542 TTGTGGGCAGGGGAAGGG 61.590 66.667 0.00 0.00 0.00 3.95
829 860 4.608514 TGTGGGCAGGGGAAGGGA 62.609 66.667 0.00 0.00 0.00 4.20
830 861 3.023735 GTGGGCAGGGGAAGGGAT 61.024 66.667 0.00 0.00 0.00 3.85
831 862 3.023116 TGGGCAGGGGAAGGGATG 61.023 66.667 0.00 0.00 0.00 3.51
832 863 3.825623 GGGCAGGGGAAGGGATGG 61.826 72.222 0.00 0.00 0.00 3.51
833 864 4.529731 GGCAGGGGAAGGGATGGC 62.530 72.222 0.00 0.00 0.00 4.40
834 865 4.529731 GCAGGGGAAGGGATGGCC 62.530 72.222 0.00 0.00 0.00 5.36
835 866 2.697644 CAGGGGAAGGGATGGCCT 60.698 66.667 3.32 0.00 0.00 5.19
836 867 2.368878 AGGGGAAGGGATGGCCTC 60.369 66.667 3.32 0.00 0.00 4.70
837 868 3.502875 GGGGAAGGGATGGCCTCC 61.503 72.222 3.32 8.58 44.11 4.30
844 875 3.893324 GGATGGCCTCCCTCCTAC 58.107 66.667 3.32 0.00 38.19 3.18
845 876 1.843832 GGATGGCCTCCCTCCTACC 60.844 68.421 3.32 0.00 38.19 3.18
846 877 1.237458 GATGGCCTCCCTCCTACCT 59.763 63.158 3.32 0.00 0.00 3.08
847 878 0.834261 GATGGCCTCCCTCCTACCTC 60.834 65.000 3.32 0.00 0.00 3.85
848 879 1.603633 ATGGCCTCCCTCCTACCTCA 61.604 60.000 3.32 0.00 0.00 3.86
849 880 1.003051 GGCCTCCCTCCTACCTCAA 59.997 63.158 0.00 0.00 0.00 3.02
850 881 0.400670 GGCCTCCCTCCTACCTCAAT 60.401 60.000 0.00 0.00 0.00 2.57
851 882 1.132817 GGCCTCCCTCCTACCTCAATA 60.133 57.143 0.00 0.00 0.00 1.90
852 883 1.972075 GCCTCCCTCCTACCTCAATAC 59.028 57.143 0.00 0.00 0.00 1.89
853 884 2.693074 GCCTCCCTCCTACCTCAATACA 60.693 54.545 0.00 0.00 0.00 2.29
854 885 3.235200 CCTCCCTCCTACCTCAATACAG 58.765 54.545 0.00 0.00 0.00 2.74
855 886 3.374318 CCTCCCTCCTACCTCAATACAGT 60.374 52.174 0.00 0.00 0.00 3.55
856 887 3.639094 CTCCCTCCTACCTCAATACAGTG 59.361 52.174 0.00 0.00 0.00 3.66
857 888 2.103263 CCCTCCTACCTCAATACAGTGC 59.897 54.545 0.00 0.00 0.00 4.40
858 889 3.034635 CCTCCTACCTCAATACAGTGCT 58.965 50.000 0.00 0.00 0.00 4.40
859 890 3.181471 CCTCCTACCTCAATACAGTGCTG 60.181 52.174 0.00 0.00 0.00 4.41
860 891 3.701542 CTCCTACCTCAATACAGTGCTGA 59.298 47.826 6.17 0.00 0.00 4.26
861 892 3.447586 TCCTACCTCAATACAGTGCTGAC 59.552 47.826 6.17 0.00 0.00 3.51
862 893 3.195610 CCTACCTCAATACAGTGCTGACA 59.804 47.826 6.17 0.00 0.00 3.58
863 894 3.325293 ACCTCAATACAGTGCTGACAG 57.675 47.619 6.17 0.00 0.00 3.51
864 895 2.027745 ACCTCAATACAGTGCTGACAGG 60.028 50.000 4.26 5.86 0.00 4.00
865 896 2.625737 CTCAATACAGTGCTGACAGGG 58.374 52.381 4.26 0.00 0.00 4.45
866 897 2.234661 CTCAATACAGTGCTGACAGGGA 59.765 50.000 4.26 0.00 0.00 4.20
867 898 2.028112 TCAATACAGTGCTGACAGGGAC 60.028 50.000 4.26 0.00 0.00 4.46
868 899 0.905357 ATACAGTGCTGACAGGGACC 59.095 55.000 4.26 0.00 0.00 4.46
869 900 0.471022 TACAGTGCTGACAGGGACCA 60.471 55.000 4.26 0.00 0.00 4.02
870 901 1.344953 ACAGTGCTGACAGGGACCAA 61.345 55.000 4.26 0.00 0.00 3.67
871 902 0.604780 CAGTGCTGACAGGGACCAAG 60.605 60.000 4.26 0.00 0.00 3.61
872 903 1.302832 GTGCTGACAGGGACCAAGG 60.303 63.158 4.26 0.00 0.00 3.61
873 904 2.352805 GCTGACAGGGACCAAGGG 59.647 66.667 4.26 0.00 0.00 3.95
874 905 2.224159 GCTGACAGGGACCAAGGGA 61.224 63.158 4.26 0.00 0.00 4.20
875 906 1.986413 CTGACAGGGACCAAGGGAG 59.014 63.158 0.00 0.00 0.00 4.30
876 907 1.538876 TGACAGGGACCAAGGGAGG 60.539 63.158 0.00 0.00 0.00 4.30
877 908 1.229529 GACAGGGACCAAGGGAGGA 60.230 63.158 0.00 0.00 0.00 3.71
878 909 1.229658 ACAGGGACCAAGGGAGGAG 60.230 63.158 0.00 0.00 0.00 3.69
879 910 1.081092 CAGGGACCAAGGGAGGAGA 59.919 63.158 0.00 0.00 0.00 3.71
880 911 1.081277 AGGGACCAAGGGAGGAGAC 59.919 63.158 0.00 0.00 0.00 3.36
881 912 1.229529 GGGACCAAGGGAGGAGACA 60.230 63.158 0.00 0.00 0.00 3.41
882 913 0.840722 GGGACCAAGGGAGGAGACAA 60.841 60.000 0.00 0.00 0.00 3.18
883 914 0.325272 GGACCAAGGGAGGAGACAAC 59.675 60.000 0.00 0.00 0.00 3.32
884 915 1.353091 GACCAAGGGAGGAGACAACT 58.647 55.000 0.00 0.00 0.00 3.16
885 916 1.700186 GACCAAGGGAGGAGACAACTT 59.300 52.381 0.00 0.00 0.00 2.66
886 917 2.106684 GACCAAGGGAGGAGACAACTTT 59.893 50.000 0.00 0.00 0.00 2.66
887 918 2.158608 ACCAAGGGAGGAGACAACTTTG 60.159 50.000 0.00 0.00 0.00 2.77
888 919 2.158608 CCAAGGGAGGAGACAACTTTGT 60.159 50.000 0.00 0.00 45.65 2.83
889 920 3.555966 CAAGGGAGGAGACAACTTTGTT 58.444 45.455 0.00 0.00 42.43 2.83
890 921 3.953542 AGGGAGGAGACAACTTTGTTT 57.046 42.857 0.00 0.00 42.43 2.83
891 922 3.821748 AGGGAGGAGACAACTTTGTTTC 58.178 45.455 4.44 4.44 42.43 2.78
897 928 4.639135 GAGACAACTTTGTTTCCTTGCT 57.361 40.909 1.98 0.00 42.43 3.91
898 929 4.602006 GAGACAACTTTGTTTCCTTGCTC 58.398 43.478 1.98 0.00 42.43 4.26
899 930 4.016444 AGACAACTTTGTTTCCTTGCTCA 58.984 39.130 0.00 0.00 42.43 4.26
900 931 4.462483 AGACAACTTTGTTTCCTTGCTCAA 59.538 37.500 0.00 0.00 42.43 3.02
901 932 5.047377 AGACAACTTTGTTTCCTTGCTCAAA 60.047 36.000 0.00 0.00 42.43 2.69
902 933 5.733676 ACAACTTTGTTTCCTTGCTCAAAT 58.266 33.333 0.00 0.00 38.47 2.32
903 934 6.172630 ACAACTTTGTTTCCTTGCTCAAATT 58.827 32.000 0.00 0.00 38.47 1.82
904 935 6.654582 ACAACTTTGTTTCCTTGCTCAAATTT 59.345 30.769 0.00 0.00 38.47 1.82
905 936 6.908870 ACTTTGTTTCCTTGCTCAAATTTC 57.091 33.333 0.00 0.00 31.08 2.17
906 937 6.643388 ACTTTGTTTCCTTGCTCAAATTTCT 58.357 32.000 0.00 0.00 31.08 2.52
907 938 6.536224 ACTTTGTTTCCTTGCTCAAATTTCTG 59.464 34.615 0.00 0.00 31.08 3.02
908 939 4.370917 TGTTTCCTTGCTCAAATTTCTGC 58.629 39.130 5.30 5.30 0.00 4.26
909 940 4.099881 TGTTTCCTTGCTCAAATTTCTGCT 59.900 37.500 11.63 0.00 0.00 4.24
910 941 5.301551 TGTTTCCTTGCTCAAATTTCTGCTA 59.698 36.000 11.63 5.19 0.00 3.49
911 942 5.633830 TTCCTTGCTCAAATTTCTGCTAG 57.366 39.130 12.86 12.86 0.00 3.42
912 943 4.655963 TCCTTGCTCAAATTTCTGCTAGT 58.344 39.130 16.16 0.00 0.00 2.57
913 944 5.072741 TCCTTGCTCAAATTTCTGCTAGTT 58.927 37.500 16.16 0.00 0.00 2.24
914 945 5.048504 TCCTTGCTCAAATTTCTGCTAGTTG 60.049 40.000 16.16 7.43 0.00 3.16
915 946 5.278660 CCTTGCTCAAATTTCTGCTAGTTGT 60.279 40.000 16.16 0.00 0.00 3.32
916 947 6.072508 CCTTGCTCAAATTTCTGCTAGTTGTA 60.073 38.462 16.16 0.00 0.00 2.41
917 948 7.362401 CCTTGCTCAAATTTCTGCTAGTTGTAT 60.362 37.037 16.16 0.00 0.00 2.29
918 949 8.560355 TTGCTCAAATTTCTGCTAGTTGTATA 57.440 30.769 11.63 0.00 0.00 1.47
919 950 8.560355 TGCTCAAATTTCTGCTAGTTGTATAA 57.440 30.769 11.63 0.00 0.00 0.98
920 951 8.450964 TGCTCAAATTTCTGCTAGTTGTATAAC 58.549 33.333 11.63 0.00 37.06 1.89
924 955 9.559958 CAAATTTCTGCTAGTTGTATAACTTGG 57.440 33.333 10.35 5.60 44.57 3.61
925 956 8.863872 AATTTCTGCTAGTTGTATAACTTGGT 57.136 30.769 10.35 0.00 44.57 3.67
926 957 7.667043 TTTCTGCTAGTTGTATAACTTGGTG 57.333 36.000 10.35 1.10 44.57 4.17
927 958 6.599356 TCTGCTAGTTGTATAACTTGGTGA 57.401 37.500 10.35 2.70 44.57 4.02
928 959 7.182817 TCTGCTAGTTGTATAACTTGGTGAT 57.817 36.000 10.35 0.00 44.57 3.06
929 960 7.620880 TCTGCTAGTTGTATAACTTGGTGATT 58.379 34.615 10.35 0.00 44.57 2.57
930 961 8.100791 TCTGCTAGTTGTATAACTTGGTGATTT 58.899 33.333 10.35 0.00 44.57 2.17
931 962 8.263940 TGCTAGTTGTATAACTTGGTGATTTC 57.736 34.615 10.35 0.00 44.57 2.17
932 963 8.100791 TGCTAGTTGTATAACTTGGTGATTTCT 58.899 33.333 10.35 0.00 44.57 2.52
933 964 8.947115 GCTAGTTGTATAACTTGGTGATTTCTT 58.053 33.333 10.35 0.00 44.57 2.52
947 978 8.755696 TGGTGATTTCTTTTAATGAAAATCGG 57.244 30.769 9.49 0.00 37.05 4.18
948 979 8.580720 TGGTGATTTCTTTTAATGAAAATCGGA 58.419 29.630 9.49 0.00 37.05 4.55
949 980 9.076596 GGTGATTTCTTTTAATGAAAATCGGAG 57.923 33.333 9.49 0.00 37.05 4.63
950 981 9.840427 GTGATTTCTTTTAATGAAAATCGGAGA 57.160 29.630 9.49 0.00 37.05 3.71
952 983 9.508567 GATTTCTTTTAATGAAAATCGGAGAGG 57.491 33.333 9.49 0.00 36.10 3.69
953 984 8.630054 TTTCTTTTAATGAAAATCGGAGAGGA 57.370 30.769 3.95 0.00 43.63 3.71
954 985 8.630054 TTCTTTTAATGAAAATCGGAGAGGAA 57.370 30.769 0.00 0.00 43.63 3.36
955 986 8.268850 TCTTTTAATGAAAATCGGAGAGGAAG 57.731 34.615 0.00 0.00 43.63 3.46
956 987 6.436843 TTTAATGAAAATCGGAGAGGAAGC 57.563 37.500 0.00 0.00 43.63 3.86
957 988 3.922171 ATGAAAATCGGAGAGGAAGCT 57.078 42.857 0.00 0.00 43.63 3.74
958 989 3.252974 TGAAAATCGGAGAGGAAGCTC 57.747 47.619 0.00 0.00 43.63 4.09
959 990 2.834549 TGAAAATCGGAGAGGAAGCTCT 59.165 45.455 0.00 0.00 43.63 4.09
960 991 3.118956 TGAAAATCGGAGAGGAAGCTCTC 60.119 47.826 0.00 0.00 46.67 3.20
961 992 2.452600 AATCGGAGAGGAAGCTCTCT 57.547 50.000 4.67 4.67 46.61 3.10
962 993 2.452600 ATCGGAGAGGAAGCTCTCTT 57.547 50.000 6.41 0.00 46.61 2.85
963 994 2.223803 TCGGAGAGGAAGCTCTCTTT 57.776 50.000 6.41 0.00 46.61 2.52
964 995 2.530701 TCGGAGAGGAAGCTCTCTTTT 58.469 47.619 6.41 0.00 46.61 2.27
965 996 3.698289 TCGGAGAGGAAGCTCTCTTTTA 58.302 45.455 6.41 0.00 46.61 1.52
966 997 4.282496 TCGGAGAGGAAGCTCTCTTTTAT 58.718 43.478 6.41 0.00 46.61 1.40
967 998 4.339814 TCGGAGAGGAAGCTCTCTTTTATC 59.660 45.833 6.41 0.00 46.61 1.75
968 999 4.098654 CGGAGAGGAAGCTCTCTTTTATCA 59.901 45.833 6.41 0.00 46.61 2.15
969 1000 5.394663 CGGAGAGGAAGCTCTCTTTTATCAA 60.395 44.000 6.41 0.00 46.61 2.57
970 1001 6.410540 GGAGAGGAAGCTCTCTTTTATCAAA 58.589 40.000 6.41 0.00 46.61 2.69
971 1002 6.881602 GGAGAGGAAGCTCTCTTTTATCAAAA 59.118 38.462 6.41 0.00 46.61 2.44
972 1003 7.391833 GGAGAGGAAGCTCTCTTTTATCAAAAA 59.608 37.037 6.41 0.00 46.61 1.94
1009 1040 1.045350 CGAGGAGAAGATGGAGGCCA 61.045 60.000 5.01 0.00 38.19 5.36
1029 1060 2.359602 TCTCTCGCCGTTCGGAGT 60.360 61.111 15.69 0.00 37.05 3.85
1045 1076 4.966787 GTGGGACAAAGGCCGGCA 62.967 66.667 30.85 0.00 44.16 5.69
1046 1077 3.978193 TGGGACAAAGGCCGGCAT 61.978 61.111 30.85 21.35 31.92 4.40
1047 1078 3.451894 GGGACAAAGGCCGGCATG 61.452 66.667 30.85 24.79 0.00 4.06
1048 1079 3.451894 GGACAAAGGCCGGCATGG 61.452 66.667 30.85 20.01 42.50 3.66
1049 1080 2.361104 GACAAAGGCCGGCATGGA 60.361 61.111 30.85 0.00 42.00 3.41
1050 1081 2.361610 ACAAAGGCCGGCATGGAG 60.362 61.111 30.85 17.20 42.00 3.86
1135 1166 0.320683 CCATGTCCTCGTGCAGAACA 60.321 55.000 0.00 0.00 0.00 3.18
1177 1243 1.656818 CGAGGCGGCCATGAAAACAT 61.657 55.000 23.09 0.00 0.00 2.71
1203 1269 4.851639 AATGGCAAGAGAGAAGGTGTAT 57.148 40.909 0.00 0.00 0.00 2.29
1300 1366 2.397597 CCCCCAAACCCCAATATTCTG 58.602 52.381 0.00 0.00 0.00 3.02
1314 1380 5.163509 CCAATATTCTGTCACCGAGAAGAGA 60.164 44.000 0.00 0.00 33.01 3.10
1315 1381 5.766150 ATATTCTGTCACCGAGAAGAGAG 57.234 43.478 0.00 0.00 33.01 3.20
1322 1388 2.405594 CGAGAAGAGAGGCGGTCG 59.594 66.667 0.00 0.00 0.00 4.79
1372 1438 3.258123 TCTCATCAATGTGAAGGTGTCGA 59.742 43.478 0.00 0.00 0.00 4.20
1408 1474 3.418675 TCGTGGTCGATGAAGAAGC 57.581 52.632 0.00 0.00 41.35 3.86
1539 1605 1.139853 GGTGCCCTCTCCTACTTCATG 59.860 57.143 0.00 0.00 0.00 3.07
1614 1680 1.202330 CTTCTGTGCCTCTCAGGGAT 58.798 55.000 0.00 0.00 38.26 3.85
1647 1713 1.302832 GAGGTTGCCTGGTGGTGAG 60.303 63.158 0.00 0.00 31.76 3.51
1722 1788 1.010125 CTTTGTGTTGCACGTCCCG 60.010 57.895 0.00 0.00 37.14 5.14
1723 1789 2.387125 CTTTGTGTTGCACGTCCCGG 62.387 60.000 0.00 0.00 37.14 5.73
1858 1924 2.939103 CCCCGTCAAGAATCTGATCAAC 59.061 50.000 0.00 0.00 0.00 3.18
1894 1960 5.086104 TGTATTTACAGGAGGAGCAAGAC 57.914 43.478 0.00 0.00 0.00 3.01
2032 2101 0.693049 GGAGAAGGGAGGACAGCAAA 59.307 55.000 0.00 0.00 0.00 3.68
2068 2137 1.844687 GCAAGGAAATGAAGGAGGCT 58.155 50.000 0.00 0.00 0.00 4.58
2103 2172 5.425217 TGAATGGTATAGCAAGGACTTCAGA 59.575 40.000 8.98 0.00 0.00 3.27
2104 2173 5.957771 ATGGTATAGCAAGGACTTCAGAA 57.042 39.130 8.98 0.00 0.00 3.02
2105 2174 5.344743 TGGTATAGCAAGGACTTCAGAAG 57.655 43.478 8.77 8.77 0.00 2.85
2148 2220 2.173569 AGGAGTATGACCCAATGCTTCC 59.826 50.000 0.00 0.00 0.00 3.46
2154 2228 2.124901 CCCAATGCTTCCGCCGTA 60.125 61.111 0.00 0.00 34.43 4.02
2278 2356 2.968156 CGACCCAAACGAACGGCA 60.968 61.111 0.00 0.00 0.00 5.69
2305 2383 2.098443 GTCAGCTTTTTGTCCGTTTGGA 59.902 45.455 0.00 0.00 43.88 3.53
2377 2455 0.321210 CCAATGCGCCGACCCATATA 60.321 55.000 4.18 0.00 0.00 0.86
2384 2462 1.980052 CCGACCCATATATGCCGGT 59.020 57.895 21.31 17.38 32.83 5.28
2507 2599 9.719279 AAAAATGTTTCACATAGTTTTGCAATG 57.281 25.926 0.00 0.00 37.97 2.82
2509 2601 5.911752 TGTTTCACATAGTTTTGCAATGGT 58.088 33.333 0.00 0.00 0.00 3.55
2511 2603 7.144661 TGTTTCACATAGTTTTGCAATGGTAG 58.855 34.615 0.00 0.00 0.00 3.18
2512 2604 5.895636 TCACATAGTTTTGCAATGGTAGG 57.104 39.130 0.00 0.00 0.00 3.18
2514 2606 3.128589 ACATAGTTTTGCAATGGTAGGCG 59.871 43.478 0.00 0.00 0.00 5.52
2606 6688 0.962356 GCTGTTGAGGTGGTGATGGG 60.962 60.000 0.00 0.00 0.00 4.00
2607 6689 0.401738 CTGTTGAGGTGGTGATGGGT 59.598 55.000 0.00 0.00 0.00 4.51
2685 6767 5.466393 CGCAAAGGAAATTGTGGAAAAAGAT 59.534 36.000 0.00 0.00 37.20 2.40
2743 6825 2.719354 GAACAACTTGCGGGCGTT 59.281 55.556 0.00 0.00 0.00 4.84
2803 6885 1.045911 GGACTAGCTAGCTGCCCTGT 61.046 60.000 27.68 16.32 44.23 4.00
2804 6886 0.827368 GACTAGCTAGCTGCCCTGTT 59.173 55.000 27.68 0.22 44.23 3.16
2805 6887 0.539051 ACTAGCTAGCTGCCCTGTTG 59.461 55.000 27.68 8.91 44.23 3.33
2806 6888 0.826715 CTAGCTAGCTGCCCTGTTGA 59.173 55.000 27.68 2.47 44.23 3.18
2807 6889 0.537188 TAGCTAGCTGCCCTGTTGAC 59.463 55.000 27.68 0.00 44.23 3.18
2808 6890 2.103042 GCTAGCTGCCCTGTTGACG 61.103 63.158 7.70 0.00 35.15 4.35
2809 6891 1.293498 CTAGCTGCCCTGTTGACGT 59.707 57.895 0.00 0.00 0.00 4.34
2810 6892 0.737715 CTAGCTGCCCTGTTGACGTC 60.738 60.000 9.11 9.11 0.00 4.34
2811 6893 2.167398 TAGCTGCCCTGTTGACGTCC 62.167 60.000 14.12 0.00 0.00 4.79
2812 6894 2.738521 CTGCCCTGTTGACGTCCG 60.739 66.667 14.12 0.00 0.00 4.79
2813 6895 3.220999 CTGCCCTGTTGACGTCCGA 62.221 63.158 14.12 0.00 0.00 4.55
2814 6896 2.264794 GCCCTGTTGACGTCCGAT 59.735 61.111 14.12 0.00 0.00 4.18
2815 6897 2.100631 GCCCTGTTGACGTCCGATG 61.101 63.158 14.12 0.93 0.00 3.84
2816 6898 1.589630 CCCTGTTGACGTCCGATGA 59.410 57.895 14.12 0.00 0.00 2.92
2817 6899 0.458543 CCCTGTTGACGTCCGATGAG 60.459 60.000 14.12 1.84 0.00 2.90
2818 6900 0.243907 CCTGTTGACGTCCGATGAGT 59.756 55.000 14.12 0.00 0.00 3.41
2819 6901 1.340658 CTGTTGACGTCCGATGAGTG 58.659 55.000 14.12 0.00 0.00 3.51
2820 6902 0.038618 TGTTGACGTCCGATGAGTGG 60.039 55.000 14.12 0.00 0.00 4.00
2821 6903 0.736325 GTTGACGTCCGATGAGTGGG 60.736 60.000 14.12 0.00 0.00 4.61
2945 7078 1.540146 GCGGTGGGAAACAATTTGCTT 60.540 47.619 0.00 0.00 0.00 3.91
2952 7085 2.035321 GGAAACAATTTGCTTCCCGACA 59.965 45.455 17.25 0.00 36.80 4.35
3007 7141 1.731433 GCGGTGTAGCTGGACGGATA 61.731 60.000 0.00 0.00 0.00 2.59
3036 7170 4.756458 GCAGCTGGCAGAGTCGCT 62.756 66.667 20.86 5.36 43.97 4.93
3147 7293 3.009115 CGGGCCAGGGAAGAGGAA 61.009 66.667 4.39 0.00 0.00 3.36
3225 7372 2.267961 GACCGGAAATGGGTCGCT 59.732 61.111 9.46 0.00 44.04 4.93
3433 7593 5.351948 TGGCTTGTATTGTACTGCATAGA 57.648 39.130 0.00 0.00 33.13 1.98
3482 7648 7.986085 ACATGCTGATTTACATATTACTCCC 57.014 36.000 0.00 0.00 0.00 4.30
3483 7649 7.749666 ACATGCTGATTTACATATTACTCCCT 58.250 34.615 0.00 0.00 0.00 4.20
3484 7650 7.880195 ACATGCTGATTTACATATTACTCCCTC 59.120 37.037 0.00 0.00 0.00 4.30
3485 7651 6.769512 TGCTGATTTACATATTACTCCCTCC 58.230 40.000 0.00 0.00 0.00 4.30
3486 7652 5.869888 GCTGATTTACATATTACTCCCTCCG 59.130 44.000 0.00 0.00 0.00 4.63
3487 7653 6.518537 GCTGATTTACATATTACTCCCTCCGT 60.519 42.308 0.00 0.00 0.00 4.69
3488 7654 7.369551 TGATTTACATATTACTCCCTCCGTT 57.630 36.000 0.00 0.00 0.00 4.44
3489 7655 7.798071 TGATTTACATATTACTCCCTCCGTTT 58.202 34.615 0.00 0.00 0.00 3.60
3490 7656 8.269317 TGATTTACATATTACTCCCTCCGTTTT 58.731 33.333 0.00 0.00 0.00 2.43
3491 7657 9.117183 GATTTACATATTACTCCCTCCGTTTTT 57.883 33.333 0.00 0.00 0.00 1.94
3493 7659 9.956640 TTTACATATTACTCCCTCCGTTTTTAA 57.043 29.630 0.00 0.00 0.00 1.52
3494 7660 9.956640 TTACATATTACTCCCTCCGTTTTTAAA 57.043 29.630 0.00 0.00 0.00 1.52
3501 7667 7.770366 ACTCCCTCCGTTTTTAAATATTTGT 57.230 32.000 11.05 0.00 0.00 2.83
3502 7668 7.823665 ACTCCCTCCGTTTTTAAATATTTGTC 58.176 34.615 11.05 0.00 0.00 3.18
3503 7669 7.668469 ACTCCCTCCGTTTTTAAATATTTGTCT 59.332 33.333 11.05 0.00 0.00 3.41
3504 7670 8.411991 TCCCTCCGTTTTTAAATATTTGTCTT 57.588 30.769 11.05 0.00 0.00 3.01
3505 7671 8.862085 TCCCTCCGTTTTTAAATATTTGTCTTT 58.138 29.630 11.05 0.00 0.00 2.52
3506 7672 9.135843 CCCTCCGTTTTTAAATATTTGTCTTTC 57.864 33.333 11.05 0.00 0.00 2.62
3507 7673 9.908152 CCTCCGTTTTTAAATATTTGTCTTTCT 57.092 29.630 11.05 0.00 0.00 2.52
3518 7684 9.582431 AAATATTTGTCTTTCTCATGAATGCAG 57.418 29.630 0.00 0.00 31.56 4.41
3519 7685 5.381174 TTTGTCTTTCTCATGAATGCAGG 57.619 39.130 0.00 0.00 31.56 4.85
3520 7686 4.025040 TGTCTTTCTCATGAATGCAGGT 57.975 40.909 0.00 0.00 31.56 4.00
3521 7687 3.754850 TGTCTTTCTCATGAATGCAGGTG 59.245 43.478 0.00 0.00 31.56 4.00
3522 7688 2.751259 TCTTTCTCATGAATGCAGGTGC 59.249 45.455 0.00 0.00 42.50 5.01
3523 7689 2.502142 TTCTCATGAATGCAGGTGCT 57.498 45.000 3.18 0.00 42.66 4.40
3524 7690 1.746470 TCTCATGAATGCAGGTGCTG 58.254 50.000 3.18 0.00 42.66 4.41
3525 7691 0.738975 CTCATGAATGCAGGTGCTGG 59.261 55.000 3.18 0.00 42.66 4.85
3526 7692 0.038599 TCATGAATGCAGGTGCTGGT 59.961 50.000 3.18 0.00 42.66 4.00
3527 7693 0.454600 CATGAATGCAGGTGCTGGTC 59.545 55.000 3.18 0.00 42.66 4.02
3537 7703 1.612395 GGTGCTGGTCTCTCCCTCAG 61.612 65.000 0.00 0.00 34.77 3.35
3645 7811 4.681978 GCCACCGAAGACAGCCGT 62.682 66.667 0.00 0.00 0.00 5.68
3696 7862 3.491652 GCGAGGTTTGCCGCTCTC 61.492 66.667 0.00 0.00 46.96 3.20
3910 8077 0.252467 CTCCAACTCCACCCTCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
3977 8144 1.209127 CGATGGTTGGCGGTGTTTC 59.791 57.895 0.00 0.00 0.00 2.78
4211 8379 3.309436 CTGCGGGGTGGATGTCGAA 62.309 63.158 0.00 0.00 0.00 3.71
4261 8429 2.098770 GCATTGCTCTTCATCAACCTCC 59.901 50.000 0.16 0.00 0.00 4.30
4368 8536 2.749076 GCACAATATGGTCTGTTGCAGA 59.251 45.455 0.00 0.00 38.25 4.26
4394 8562 2.428187 TGGTACACCTGGTTGCCG 59.572 61.111 0.00 0.00 36.82 5.69
4420 8588 2.042433 TGAATTCGGGTTCTTGGGGAAT 59.958 45.455 0.04 0.00 36.24 3.01
4423 8591 1.295020 TCGGGTTCTTGGGGAATCAT 58.705 50.000 0.00 0.00 36.81 2.45
4547 8715 3.052036 CCTTTCACATTGTTGCTTTCCG 58.948 45.455 0.00 0.00 0.00 4.30
4566 8734 1.262950 CGCAAGTTCGATGTTTGTCCA 59.737 47.619 0.00 0.00 0.00 4.02
4687 8855 2.811431 CCTGTTTTGCACCTTGTATCGA 59.189 45.455 0.00 0.00 0.00 3.59
4724 8892 3.117888 TCTGCCTCAGTGTCTTCCTTTTT 60.118 43.478 0.00 0.00 32.61 1.94
4856 9031 6.239036 GCCGATGCCTTTCCTCTAAAAATATT 60.239 38.462 0.00 0.00 0.00 1.28
4857 9032 7.684428 GCCGATGCCTTTCCTCTAAAAATATTT 60.684 37.037 0.00 0.00 0.00 1.40
4858 9033 7.649306 CCGATGCCTTTCCTCTAAAAATATTTG 59.351 37.037 0.39 0.00 0.00 2.32
4859 9034 8.190784 CGATGCCTTTCCTCTAAAAATATTTGT 58.809 33.333 0.39 0.00 0.00 2.83
4860 9035 9.521503 GATGCCTTTCCTCTAAAAATATTTGTC 57.478 33.333 0.39 0.00 0.00 3.18
4861 9036 8.650143 TGCCTTTCCTCTAAAAATATTTGTCT 57.350 30.769 0.39 0.00 0.00 3.41
4862 9037 9.088987 TGCCTTTCCTCTAAAAATATTTGTCTT 57.911 29.630 0.39 0.00 0.00 3.01
4863 9038 9.929180 GCCTTTCCTCTAAAAATATTTGTCTTT 57.071 29.630 0.39 0.00 0.00 2.52
4882 9057 9.997482 TTGTCTTTGTAGATTTTAACAAGTGAC 57.003 29.630 12.34 12.34 39.11 3.67
4883 9058 9.391006 TGTCTTTGTAGATTTTAACAAGTGACT 57.609 29.630 16.55 0.00 39.23 3.41
4892 9067 9.701098 AGATTTTAACAAGTGACTACATACGAA 57.299 29.630 0.00 0.00 0.00 3.85
4893 9068 9.953825 GATTTTAACAAGTGACTACATACGAAG 57.046 33.333 0.00 0.00 0.00 3.79
4914 9089 9.924650 ACGAAGTAAAATAAGTGAATCTACACT 57.075 29.630 0.00 0.00 46.76 3.55
4948 9123 9.741647 ATGTCTATATACATTCGCATGTGATAG 57.258 33.333 10.29 15.40 43.92 2.08
4949 9124 8.739972 TGTCTATATACATTCGCATGTGATAGT 58.260 33.333 20.60 13.57 43.92 2.12
4950 9125 9.574458 GTCTATATACATTCGCATGTGATAGTT 57.426 33.333 20.60 5.87 43.92 2.24
4951 9126 9.788960 TCTATATACATTCGCATGTGATAGTTC 57.211 33.333 20.60 0.00 43.92 3.01
4952 9127 9.573133 CTATATACATTCGCATGTGATAGTTCA 57.427 33.333 10.29 4.06 43.92 3.18
4954 9129 7.734924 ATACATTCGCATGTGATAGTTCATT 57.265 32.000 10.29 0.00 43.92 2.57
4955 9130 6.441093 ACATTCGCATGTGATAGTTCATTT 57.559 33.333 10.29 0.00 42.46 2.32
4956 9131 6.260377 ACATTCGCATGTGATAGTTCATTTG 58.740 36.000 10.29 0.63 42.46 2.32
4957 9132 6.093909 ACATTCGCATGTGATAGTTCATTTGA 59.906 34.615 10.29 0.00 42.46 2.69
4958 9133 6.493449 TTCGCATGTGATAGTTCATTTGAA 57.507 33.333 10.29 0.00 33.56 2.69
4959 9134 6.682423 TCGCATGTGATAGTTCATTTGAAT 57.318 33.333 4.45 0.00 36.33 2.57
4960 9135 6.718388 TCGCATGTGATAGTTCATTTGAATC 58.282 36.000 4.45 0.00 36.33 2.52
4961 9136 6.539826 TCGCATGTGATAGTTCATTTGAATCT 59.460 34.615 4.45 0.00 36.33 2.40
4962 9137 6.849811 CGCATGTGATAGTTCATTTGAATCTC 59.150 38.462 0.00 0.00 36.33 2.75
4963 9138 7.254692 CGCATGTGATAGTTCATTTGAATCTCT 60.255 37.037 0.00 0.00 36.33 3.10
4964 9139 9.049523 GCATGTGATAGTTCATTTGAATCTCTA 57.950 33.333 0.00 0.00 36.33 2.43
4990 9165 9.908152 AAAAAGACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
4991 9166 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
4992 9167 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
4993 9168 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
5085 11573 2.925078 GTGCCCCTACACCCTCATA 58.075 57.895 0.00 0.00 34.35 2.15
5090 11578 2.421529 GCCCCTACACCCTCATAAACAG 60.422 54.545 0.00 0.00 0.00 3.16
5149 11637 3.897239 TGAAACTTTCAGGGCTCAAAGA 58.103 40.909 3.54 0.00 34.08 2.52
5163 11651 6.071165 AGGGCTCAAAGATTATCAAAGGTTTG 60.071 38.462 0.00 0.00 39.48 2.93
5181 11669 6.172630 AGGTTTGATGTTCTTGCAAAGTTTT 58.827 32.000 0.00 0.00 46.34 2.43
5210 11699 0.325296 TAACCTCGTGGAGCCCTCAT 60.325 55.000 11.17 0.00 37.04 2.90
5301 11791 9.769093 GCTCTTCGAATGTTATTTTTAGCTAAA 57.231 29.630 14.96 14.96 0.00 1.85
5343 11833 4.836825 AGTTTCATGATGTTCGATGTCCT 58.163 39.130 0.00 0.00 0.00 3.85
5399 11894 6.867519 TGAATCTACTGTTCATTGAGGGTA 57.132 37.500 0.00 0.00 31.07 3.69
5405 11900 3.716872 ACTGTTCATTGAGGGTATAGGGG 59.283 47.826 0.00 0.00 0.00 4.79
5406 11901 2.441750 TGTTCATTGAGGGTATAGGGGC 59.558 50.000 0.00 0.00 0.00 5.80
5407 11902 2.441750 GTTCATTGAGGGTATAGGGGCA 59.558 50.000 0.00 0.00 0.00 5.36
5457 12451 2.472029 AGATGGAATTGACGAGGAGGT 58.528 47.619 0.00 0.00 0.00 3.85
5458 12452 2.169352 AGATGGAATTGACGAGGAGGTG 59.831 50.000 0.00 0.00 0.00 4.00
5504 12498 7.861629 AGAACCACAGAATTGAGAATACCATA 58.138 34.615 0.00 0.00 0.00 2.74
5529 12523 2.292267 ACAGAGTGAAAGTGTGCCTTG 58.708 47.619 0.00 0.00 33.02 3.61
5563 12558 4.712763 CTTGTAAGCAAGCTCTTTTACGG 58.287 43.478 0.00 0.00 44.54 4.02
5564 12559 3.735591 TGTAAGCAAGCTCTTTTACGGT 58.264 40.909 0.00 0.00 0.00 4.83
5565 12560 3.496884 TGTAAGCAAGCTCTTTTACGGTG 59.503 43.478 0.00 0.00 0.00 4.94
5566 12561 2.543777 AGCAAGCTCTTTTACGGTGA 57.456 45.000 0.00 0.00 0.00 4.02
5567 12562 3.059352 AGCAAGCTCTTTTACGGTGAT 57.941 42.857 0.00 0.00 0.00 3.06
5568 12563 3.412386 AGCAAGCTCTTTTACGGTGATT 58.588 40.909 0.00 0.00 0.00 2.57
5569 12564 3.189287 AGCAAGCTCTTTTACGGTGATTG 59.811 43.478 0.00 0.00 0.00 2.67
5570 12565 3.670627 GCAAGCTCTTTTACGGTGATTGG 60.671 47.826 0.00 0.00 0.00 3.16
5571 12566 2.084546 AGCTCTTTTACGGTGATTGGC 58.915 47.619 0.00 0.00 0.00 4.52
5572 12567 1.202031 GCTCTTTTACGGTGATTGGCG 60.202 52.381 0.00 0.00 0.00 5.69
5573 12568 2.343101 CTCTTTTACGGTGATTGGCGA 58.657 47.619 0.00 0.00 0.00 5.54
5574 12569 2.343101 TCTTTTACGGTGATTGGCGAG 58.657 47.619 0.00 0.00 0.00 5.03
5575 12570 2.073816 CTTTTACGGTGATTGGCGAGT 58.926 47.619 0.00 0.00 0.00 4.18
5576 12571 2.172851 TTTACGGTGATTGGCGAGTT 57.827 45.000 0.00 0.00 0.00 3.01
5577 12572 3.316071 TTTACGGTGATTGGCGAGTTA 57.684 42.857 0.00 0.00 0.00 2.24
5578 12573 3.530265 TTACGGTGATTGGCGAGTTAT 57.470 42.857 0.00 0.00 0.00 1.89
5579 12574 4.652421 TTACGGTGATTGGCGAGTTATA 57.348 40.909 0.00 0.00 0.00 0.98
5580 12575 3.530265 ACGGTGATTGGCGAGTTATAA 57.470 42.857 0.00 0.00 0.00 0.98
5581 12576 4.067972 ACGGTGATTGGCGAGTTATAAT 57.932 40.909 0.00 0.00 0.00 1.28
5582 12577 5.204409 ACGGTGATTGGCGAGTTATAATA 57.796 39.130 0.00 0.00 0.00 0.98
5583 12578 5.790593 ACGGTGATTGGCGAGTTATAATAT 58.209 37.500 0.00 0.00 0.00 1.28
5584 12579 5.637810 ACGGTGATTGGCGAGTTATAATATG 59.362 40.000 0.00 0.00 0.00 1.78
5585 12580 5.637810 CGGTGATTGGCGAGTTATAATATGT 59.362 40.000 0.00 0.00 0.00 2.29
5586 12581 6.809689 CGGTGATTGGCGAGTTATAATATGTA 59.190 38.462 0.00 0.00 0.00 2.29
5587 12582 7.329962 CGGTGATTGGCGAGTTATAATATGTAA 59.670 37.037 0.00 0.00 0.00 2.41
5588 12583 9.162764 GGTGATTGGCGAGTTATAATATGTAAT 57.837 33.333 0.00 0.00 0.00 1.89
5608 12603 8.335532 TGTAATTTCATGTAACTCTCCCTTTG 57.664 34.615 0.00 0.00 0.00 2.77
5609 12604 8.160765 TGTAATTTCATGTAACTCTCCCTTTGA 58.839 33.333 0.00 0.00 0.00 2.69
5610 12605 9.178758 GTAATTTCATGTAACTCTCCCTTTGAT 57.821 33.333 0.00 0.00 0.00 2.57
5611 12606 8.655935 AATTTCATGTAACTCTCCCTTTGATT 57.344 30.769 0.00 0.00 0.00 2.57
5612 12607 9.753674 AATTTCATGTAACTCTCCCTTTGATTA 57.246 29.630 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
643 673 6.038936 GCCAGAGCCCGACTTTATAAATAAAA 59.961 38.462 0.00 0.00 32.39 1.52
685 716 4.677584 ACTAAGAAGCGATAACAGAGCAG 58.322 43.478 0.00 0.00 0.00 4.24
695 726 7.030768 GTCTAGAACAGAAACTAAGAAGCGAT 58.969 38.462 0.00 0.00 34.17 4.58
696 727 6.207025 AGTCTAGAACAGAAACTAAGAAGCGA 59.793 38.462 0.00 0.00 34.17 4.93
697 728 6.383415 AGTCTAGAACAGAAACTAAGAAGCG 58.617 40.000 0.00 0.00 34.17 4.68
698 729 8.596271 AAAGTCTAGAACAGAAACTAAGAAGC 57.404 34.615 0.00 0.00 34.17 3.86
716 747 9.959749 CCAGCATTACAAAGTTTTAAAAGTCTA 57.040 29.630 8.70 0.00 0.00 2.59
717 748 8.474831 ACCAGCATTACAAAGTTTTAAAAGTCT 58.525 29.630 8.70 0.00 0.00 3.24
718 749 8.539674 CACCAGCATTACAAAGTTTTAAAAGTC 58.460 33.333 8.70 0.00 0.00 3.01
719 750 7.011016 GCACCAGCATTACAAAGTTTTAAAAGT 59.989 33.333 0.00 1.03 41.58 2.66
720 751 7.224557 AGCACCAGCATTACAAAGTTTTAAAAG 59.775 33.333 0.00 0.00 45.49 2.27
721 752 7.010923 CAGCACCAGCATTACAAAGTTTTAAAA 59.989 33.333 0.00 0.00 45.49 1.52
722 753 6.478344 CAGCACCAGCATTACAAAGTTTTAAA 59.522 34.615 0.00 0.00 45.49 1.52
723 754 5.982516 CAGCACCAGCATTACAAAGTTTTAA 59.017 36.000 0.00 0.00 45.49 1.52
724 755 5.508825 CCAGCACCAGCATTACAAAGTTTTA 60.509 40.000 0.00 0.00 45.49 1.52
725 756 4.370917 CAGCACCAGCATTACAAAGTTTT 58.629 39.130 0.00 0.00 45.49 2.43
726 757 3.243839 CCAGCACCAGCATTACAAAGTTT 60.244 43.478 0.00 0.00 45.49 2.66
727 758 2.297033 CCAGCACCAGCATTACAAAGTT 59.703 45.455 0.00 0.00 45.49 2.66
728 759 1.888512 CCAGCACCAGCATTACAAAGT 59.111 47.619 0.00 0.00 45.49 2.66
729 760 1.203052 CCCAGCACCAGCATTACAAAG 59.797 52.381 0.00 0.00 45.49 2.77
730 761 1.202989 TCCCAGCACCAGCATTACAAA 60.203 47.619 0.00 0.00 45.49 2.83
731 762 0.403655 TCCCAGCACCAGCATTACAA 59.596 50.000 0.00 0.00 45.49 2.41
732 763 0.322456 GTCCCAGCACCAGCATTACA 60.322 55.000 0.00 0.00 45.49 2.41
733 764 1.032114 GGTCCCAGCACCAGCATTAC 61.032 60.000 0.00 0.00 45.49 1.89
734 765 1.302949 GGTCCCAGCACCAGCATTA 59.697 57.895 0.00 0.00 45.49 1.90
735 766 2.036256 GGTCCCAGCACCAGCATT 59.964 61.111 0.00 0.00 45.49 3.56
736 767 3.259314 TGGTCCCAGCACCAGCAT 61.259 61.111 0.00 0.00 41.84 3.79
740 771 0.251297 CAAATCTGGTCCCAGCACCA 60.251 55.000 8.53 0.00 44.69 4.17
741 772 0.038166 TCAAATCTGGTCCCAGCACC 59.962 55.000 8.53 0.00 43.31 5.01
742 773 1.457346 CTCAAATCTGGTCCCAGCAC 58.543 55.000 8.53 0.00 43.31 4.40
743 774 0.322816 GCTCAAATCTGGTCCCAGCA 60.323 55.000 8.53 0.00 43.31 4.41
744 775 1.034292 GGCTCAAATCTGGTCCCAGC 61.034 60.000 8.53 0.00 43.31 4.85
745 776 0.394899 GGGCTCAAATCTGGTCCCAG 60.395 60.000 7.02 7.02 44.86 4.45
746 777 1.139498 TGGGCTCAAATCTGGTCCCA 61.139 55.000 0.00 0.00 40.16 4.37
747 778 0.394899 CTGGGCTCAAATCTGGTCCC 60.395 60.000 0.00 0.00 35.97 4.46
748 779 0.394899 CCTGGGCTCAAATCTGGTCC 60.395 60.000 0.00 0.00 0.00 4.46
749 780 1.034292 GCCTGGGCTCAAATCTGGTC 61.034 60.000 4.12 0.00 38.26 4.02
750 781 1.000396 GCCTGGGCTCAAATCTGGT 60.000 57.895 4.12 0.00 38.26 4.00
751 782 1.755783 GGCCTGGGCTCAAATCTGG 60.756 63.158 13.80 0.00 41.60 3.86
752 783 0.324091 AAGGCCTGGGCTCAAATCTG 60.324 55.000 24.18 0.00 37.50 2.90
753 784 1.213926 CTAAGGCCTGGGCTCAAATCT 59.786 52.381 24.18 9.19 37.50 2.40
754 785 1.685148 CTAAGGCCTGGGCTCAAATC 58.315 55.000 24.18 0.00 37.50 2.17
755 786 0.259938 CCTAAGGCCTGGGCTCAAAT 59.740 55.000 24.18 10.36 37.50 2.32
756 787 1.140134 ACCTAAGGCCTGGGCTCAAA 61.140 55.000 24.18 11.09 37.50 2.69
757 788 1.140134 AACCTAAGGCCTGGGCTCAA 61.140 55.000 24.18 13.61 37.50 3.02
758 789 1.140134 AAACCTAAGGCCTGGGCTCA 61.140 55.000 24.18 8.33 37.50 4.26
759 790 0.394488 GAAACCTAAGGCCTGGGCTC 60.394 60.000 24.18 15.12 37.50 4.70
760 791 1.691823 GAAACCTAAGGCCTGGGCT 59.308 57.895 18.27 18.27 41.24 5.19
761 792 1.379977 GGAAACCTAAGGCCTGGGC 60.380 63.158 21.04 13.15 41.06 5.36
780 811 0.111253 AGTGCAGAACTCCCCAAAGG 59.889 55.000 0.00 0.00 31.64 3.11
781 812 1.242076 CAGTGCAGAACTCCCCAAAG 58.758 55.000 0.00 0.00 36.83 2.77
782 813 0.550914 ACAGTGCAGAACTCCCCAAA 59.449 50.000 0.00 0.00 36.83 3.28
783 814 0.550914 AACAGTGCAGAACTCCCCAA 59.449 50.000 0.00 0.00 36.83 4.12
784 815 0.550914 AAACAGTGCAGAACTCCCCA 59.449 50.000 0.00 0.00 36.83 4.96
785 816 1.338020 CAAAACAGTGCAGAACTCCCC 59.662 52.381 0.00 0.00 36.83 4.81
786 817 2.291741 CTCAAAACAGTGCAGAACTCCC 59.708 50.000 0.00 0.00 36.83 4.30
787 818 2.291741 CCTCAAAACAGTGCAGAACTCC 59.708 50.000 0.00 0.00 36.83 3.85
788 819 3.002759 GTCCTCAAAACAGTGCAGAACTC 59.997 47.826 0.00 0.00 36.83 3.01
789 820 2.945668 GTCCTCAAAACAGTGCAGAACT 59.054 45.455 0.00 0.00 40.93 3.01
790 821 2.945668 AGTCCTCAAAACAGTGCAGAAC 59.054 45.455 0.00 0.00 0.00 3.01
791 822 3.281727 AGTCCTCAAAACAGTGCAGAA 57.718 42.857 0.00 0.00 0.00 3.02
792 823 2.945008 CAAGTCCTCAAAACAGTGCAGA 59.055 45.455 0.00 0.00 0.00 4.26
793 824 2.684881 ACAAGTCCTCAAAACAGTGCAG 59.315 45.455 0.00 0.00 0.00 4.41
794 825 2.423185 CACAAGTCCTCAAAACAGTGCA 59.577 45.455 0.00 0.00 0.00 4.57
795 826 2.223572 CCACAAGTCCTCAAAACAGTGC 60.224 50.000 0.00 0.00 0.00 4.40
796 827 2.358898 CCCACAAGTCCTCAAAACAGTG 59.641 50.000 0.00 0.00 0.00 3.66
797 828 2.654863 CCCACAAGTCCTCAAAACAGT 58.345 47.619 0.00 0.00 0.00 3.55
798 829 1.338020 GCCCACAAGTCCTCAAAACAG 59.662 52.381 0.00 0.00 0.00 3.16
799 830 1.341482 TGCCCACAAGTCCTCAAAACA 60.341 47.619 0.00 0.00 0.00 2.83
800 831 1.338020 CTGCCCACAAGTCCTCAAAAC 59.662 52.381 0.00 0.00 0.00 2.43
801 832 1.691196 CTGCCCACAAGTCCTCAAAA 58.309 50.000 0.00 0.00 0.00 2.44
802 833 0.178992 CCTGCCCACAAGTCCTCAAA 60.179 55.000 0.00 0.00 0.00 2.69
803 834 1.455849 CCTGCCCACAAGTCCTCAA 59.544 57.895 0.00 0.00 0.00 3.02
804 835 2.528818 CCCTGCCCACAAGTCCTCA 61.529 63.158 0.00 0.00 0.00 3.86
805 836 2.352805 CCCTGCCCACAAGTCCTC 59.647 66.667 0.00 0.00 0.00 3.71
806 837 3.260100 CCCCTGCCCACAAGTCCT 61.260 66.667 0.00 0.00 0.00 3.85
807 838 2.771328 CTTCCCCTGCCCACAAGTCC 62.771 65.000 0.00 0.00 0.00 3.85
808 839 1.303643 CTTCCCCTGCCCACAAGTC 60.304 63.158 0.00 0.00 0.00 3.01
809 840 2.845345 CCTTCCCCTGCCCACAAGT 61.845 63.158 0.00 0.00 0.00 3.16
810 841 2.036256 CCTTCCCCTGCCCACAAG 59.964 66.667 0.00 0.00 0.00 3.16
811 842 3.589542 CCCTTCCCCTGCCCACAA 61.590 66.667 0.00 0.00 0.00 3.33
812 843 3.908712 ATCCCTTCCCCTGCCCACA 62.909 63.158 0.00 0.00 0.00 4.17
813 844 3.023735 ATCCCTTCCCCTGCCCAC 61.024 66.667 0.00 0.00 0.00 4.61
814 845 3.023116 CATCCCTTCCCCTGCCCA 61.023 66.667 0.00 0.00 0.00 5.36
815 846 3.825623 CCATCCCTTCCCCTGCCC 61.826 72.222 0.00 0.00 0.00 5.36
816 847 4.529731 GCCATCCCTTCCCCTGCC 62.530 72.222 0.00 0.00 0.00 4.85
817 848 4.529731 GGCCATCCCTTCCCCTGC 62.530 72.222 0.00 0.00 0.00 4.85
818 849 2.697644 AGGCCATCCCTTCCCCTG 60.698 66.667 5.01 0.00 43.06 4.45
819 850 2.368878 GAGGCCATCCCTTCCCCT 60.369 66.667 5.01 0.00 46.60 4.79
820 851 3.502875 GGAGGCCATCCCTTCCCC 61.503 72.222 5.01 0.00 46.60 4.81
828 859 0.834261 GAGGTAGGAGGGAGGCCATC 60.834 65.000 5.01 0.00 33.07 3.51
829 860 1.237458 GAGGTAGGAGGGAGGCCAT 59.763 63.158 5.01 0.00 0.00 4.40
830 861 1.821966 TTGAGGTAGGAGGGAGGCCA 61.822 60.000 5.01 0.00 0.00 5.36
831 862 0.400670 ATTGAGGTAGGAGGGAGGCC 60.401 60.000 0.00 0.00 0.00 5.19
832 863 1.972075 GTATTGAGGTAGGAGGGAGGC 59.028 57.143 0.00 0.00 0.00 4.70
833 864 3.235200 CTGTATTGAGGTAGGAGGGAGG 58.765 54.545 0.00 0.00 0.00 4.30
834 865 3.639094 CACTGTATTGAGGTAGGAGGGAG 59.361 52.174 0.00 0.00 0.00 4.30
835 866 3.643237 CACTGTATTGAGGTAGGAGGGA 58.357 50.000 0.00 0.00 0.00 4.20
836 867 2.103263 GCACTGTATTGAGGTAGGAGGG 59.897 54.545 0.00 0.00 0.00 4.30
837 868 3.034635 AGCACTGTATTGAGGTAGGAGG 58.965 50.000 0.00 0.00 0.00 4.30
838 869 3.701542 TCAGCACTGTATTGAGGTAGGAG 59.298 47.826 0.00 0.00 0.00 3.69
839 870 3.447586 GTCAGCACTGTATTGAGGTAGGA 59.552 47.826 0.00 0.00 0.00 2.94
840 871 3.195610 TGTCAGCACTGTATTGAGGTAGG 59.804 47.826 0.00 0.00 0.00 3.18
841 872 4.428209 CTGTCAGCACTGTATTGAGGTAG 58.572 47.826 0.00 0.00 0.00 3.18
842 873 3.195610 CCTGTCAGCACTGTATTGAGGTA 59.804 47.826 0.00 0.00 0.00 3.08
843 874 2.027745 CCTGTCAGCACTGTATTGAGGT 60.028 50.000 0.00 0.00 0.00 3.85
844 875 2.625737 CCTGTCAGCACTGTATTGAGG 58.374 52.381 0.00 0.00 0.00 3.86
845 876 2.234661 TCCCTGTCAGCACTGTATTGAG 59.765 50.000 0.00 0.00 0.00 3.02
846 877 2.028112 GTCCCTGTCAGCACTGTATTGA 60.028 50.000 0.00 0.00 0.00 2.57
847 878 2.350522 GTCCCTGTCAGCACTGTATTG 58.649 52.381 0.00 0.00 0.00 1.90
848 879 1.279271 GGTCCCTGTCAGCACTGTATT 59.721 52.381 0.00 0.00 0.00 1.89
849 880 0.905357 GGTCCCTGTCAGCACTGTAT 59.095 55.000 0.00 0.00 0.00 2.29
850 881 0.471022 TGGTCCCTGTCAGCACTGTA 60.471 55.000 0.00 0.00 0.00 2.74
851 882 1.344953 TTGGTCCCTGTCAGCACTGT 61.345 55.000 0.00 0.00 0.00 3.55
852 883 0.604780 CTTGGTCCCTGTCAGCACTG 60.605 60.000 0.00 0.00 0.00 3.66
853 884 1.757306 CTTGGTCCCTGTCAGCACT 59.243 57.895 0.00 0.00 0.00 4.40
854 885 1.302832 CCTTGGTCCCTGTCAGCAC 60.303 63.158 0.00 0.00 0.00 4.40
855 886 2.528818 CCCTTGGTCCCTGTCAGCA 61.529 63.158 0.00 0.00 0.00 4.41
856 887 2.190488 CTCCCTTGGTCCCTGTCAGC 62.190 65.000 0.00 0.00 0.00 4.26
857 888 1.557269 CCTCCCTTGGTCCCTGTCAG 61.557 65.000 0.00 0.00 0.00 3.51
858 889 1.538876 CCTCCCTTGGTCCCTGTCA 60.539 63.158 0.00 0.00 0.00 3.58
859 890 1.229529 TCCTCCCTTGGTCCCTGTC 60.230 63.158 0.00 0.00 0.00 3.51
860 891 1.229658 CTCCTCCCTTGGTCCCTGT 60.230 63.158 0.00 0.00 0.00 4.00
861 892 1.081092 TCTCCTCCCTTGGTCCCTG 59.919 63.158 0.00 0.00 0.00 4.45
862 893 1.081277 GTCTCCTCCCTTGGTCCCT 59.919 63.158 0.00 0.00 0.00 4.20
863 894 0.840722 TTGTCTCCTCCCTTGGTCCC 60.841 60.000 0.00 0.00 0.00 4.46
864 895 0.325272 GTTGTCTCCTCCCTTGGTCC 59.675 60.000 0.00 0.00 0.00 4.46
865 896 1.353091 AGTTGTCTCCTCCCTTGGTC 58.647 55.000 0.00 0.00 0.00 4.02
866 897 1.821088 AAGTTGTCTCCTCCCTTGGT 58.179 50.000 0.00 0.00 0.00 3.67
867 898 2.158608 ACAAAGTTGTCTCCTCCCTTGG 60.159 50.000 0.00 0.00 36.50 3.61
868 899 3.214696 ACAAAGTTGTCTCCTCCCTTG 57.785 47.619 0.00 0.00 36.50 3.61
869 900 3.953542 AACAAAGTTGTCTCCTCCCTT 57.046 42.857 0.00 0.00 41.31 3.95
870 901 3.435169 GGAAACAAAGTTGTCTCCTCCCT 60.435 47.826 8.95 0.00 43.41 4.20
871 902 2.885266 GGAAACAAAGTTGTCTCCTCCC 59.115 50.000 8.95 0.00 43.41 4.30
875 906 3.381590 AGCAAGGAAACAAAGTTGTCTCC 59.618 43.478 8.26 8.26 46.35 3.71
876 907 4.096382 TGAGCAAGGAAACAAAGTTGTCTC 59.904 41.667 0.00 0.00 41.31 3.36
877 908 4.016444 TGAGCAAGGAAACAAAGTTGTCT 58.984 39.130 0.00 0.00 41.31 3.41
878 909 4.370364 TGAGCAAGGAAACAAAGTTGTC 57.630 40.909 0.00 0.00 41.31 3.18
879 910 4.799564 TTGAGCAAGGAAACAAAGTTGT 57.200 36.364 0.00 0.00 44.72 3.32
880 911 6.667007 AATTTGAGCAAGGAAACAAAGTTG 57.333 33.333 0.00 0.00 36.07 3.16
881 912 7.064966 CAGAAATTTGAGCAAGGAAACAAAGTT 59.935 33.333 0.00 0.00 41.02 2.66
882 913 6.536224 CAGAAATTTGAGCAAGGAAACAAAGT 59.464 34.615 0.00 0.00 36.07 2.66
883 914 6.510638 GCAGAAATTTGAGCAAGGAAACAAAG 60.511 38.462 0.00 0.00 36.07 2.77
884 915 5.294060 GCAGAAATTTGAGCAAGGAAACAAA 59.706 36.000 0.00 0.00 36.82 2.83
885 916 4.810491 GCAGAAATTTGAGCAAGGAAACAA 59.190 37.500 0.00 0.00 0.00 2.83
886 917 4.099881 AGCAGAAATTTGAGCAAGGAAACA 59.900 37.500 12.42 0.00 0.00 2.83
887 918 4.625028 AGCAGAAATTTGAGCAAGGAAAC 58.375 39.130 12.42 0.00 0.00 2.78
888 919 4.942761 AGCAGAAATTTGAGCAAGGAAA 57.057 36.364 12.42 0.00 0.00 3.13
889 920 5.072741 ACTAGCAGAAATTTGAGCAAGGAA 58.927 37.500 12.42 0.00 0.00 3.36
890 921 4.655963 ACTAGCAGAAATTTGAGCAAGGA 58.344 39.130 12.42 0.00 0.00 3.36
891 922 5.159209 CAACTAGCAGAAATTTGAGCAAGG 58.841 41.667 12.42 5.84 0.00 3.61
892 923 5.766222 ACAACTAGCAGAAATTTGAGCAAG 58.234 37.500 12.42 0.98 0.00 4.01
893 924 5.772825 ACAACTAGCAGAAATTTGAGCAA 57.227 34.783 12.42 0.00 0.00 3.91
894 925 8.450964 GTTATACAACTAGCAGAAATTTGAGCA 58.549 33.333 12.42 0.94 0.00 4.26
895 926 8.669243 AGTTATACAACTAGCAGAAATTTGAGC 58.331 33.333 0.00 0.00 43.33 4.26
898 929 9.559958 CCAAGTTATACAACTAGCAGAAATTTG 57.440 33.333 0.00 0.00 44.41 2.32
899 930 9.297037 ACCAAGTTATACAACTAGCAGAAATTT 57.703 29.630 0.00 0.00 44.41 1.82
900 931 8.730680 CACCAAGTTATACAACTAGCAGAAATT 58.269 33.333 0.00 0.00 44.41 1.82
901 932 8.100791 TCACCAAGTTATACAACTAGCAGAAAT 58.899 33.333 0.00 0.00 44.41 2.17
902 933 7.446769 TCACCAAGTTATACAACTAGCAGAAA 58.553 34.615 0.00 0.00 44.41 2.52
903 934 6.999950 TCACCAAGTTATACAACTAGCAGAA 58.000 36.000 0.00 0.00 44.41 3.02
904 935 6.599356 TCACCAAGTTATACAACTAGCAGA 57.401 37.500 0.00 0.00 44.41 4.26
905 936 7.849804 AATCACCAAGTTATACAACTAGCAG 57.150 36.000 0.00 0.00 44.41 4.24
906 937 8.100791 AGAAATCACCAAGTTATACAACTAGCA 58.899 33.333 0.00 0.00 44.41 3.49
907 938 8.494016 AGAAATCACCAAGTTATACAACTAGC 57.506 34.615 0.00 0.00 44.41 3.42
921 952 9.202273 CCGATTTTCATTAAAAGAAATCACCAA 57.798 29.630 15.23 1.47 37.97 3.67
922 953 8.580720 TCCGATTTTCATTAAAAGAAATCACCA 58.419 29.630 15.23 1.96 37.97 4.17
923 954 8.980143 TCCGATTTTCATTAAAAGAAATCACC 57.020 30.769 15.23 4.73 37.97 4.02
924 955 9.840427 TCTCCGATTTTCATTAAAAGAAATCAC 57.160 29.630 15.23 7.65 37.97 3.06
926 957 9.508567 CCTCTCCGATTTTCATTAAAAGAAATC 57.491 33.333 7.13 8.26 37.97 2.17
927 958 9.243105 TCCTCTCCGATTTTCATTAAAAGAAAT 57.757 29.630 7.13 1.56 37.97 2.17
928 959 8.630054 TCCTCTCCGATTTTCATTAAAAGAAA 57.370 30.769 3.19 3.19 37.97 2.52
929 960 8.630054 TTCCTCTCCGATTTTCATTAAAAGAA 57.370 30.769 0.00 0.00 37.97 2.52
930 961 7.148239 GCTTCCTCTCCGATTTTCATTAAAAGA 60.148 37.037 0.00 0.00 37.97 2.52
931 962 6.969473 GCTTCCTCTCCGATTTTCATTAAAAG 59.031 38.462 0.00 0.00 37.97 2.27
932 963 6.659242 AGCTTCCTCTCCGATTTTCATTAAAA 59.341 34.615 0.00 0.00 38.87 1.52
933 964 6.180472 AGCTTCCTCTCCGATTTTCATTAAA 58.820 36.000 0.00 0.00 0.00 1.52
934 965 5.745227 AGCTTCCTCTCCGATTTTCATTAA 58.255 37.500 0.00 0.00 0.00 1.40
935 966 5.129485 AGAGCTTCCTCTCCGATTTTCATTA 59.871 40.000 0.00 0.00 45.21 1.90
936 967 4.080638 AGAGCTTCCTCTCCGATTTTCATT 60.081 41.667 0.00 0.00 45.21 2.57
937 968 3.454082 AGAGCTTCCTCTCCGATTTTCAT 59.546 43.478 0.00 0.00 45.21 2.57
938 969 2.834549 AGAGCTTCCTCTCCGATTTTCA 59.165 45.455 0.00 0.00 45.21 2.69
939 970 3.535280 AGAGCTTCCTCTCCGATTTTC 57.465 47.619 0.00 0.00 45.21 2.29
981 1012 4.040461 TCCATCTTCTCCTCGTCTGTTTTT 59.960 41.667 0.00 0.00 0.00 1.94
982 1013 3.578716 TCCATCTTCTCCTCGTCTGTTTT 59.421 43.478 0.00 0.00 0.00 2.43
983 1014 3.165875 TCCATCTTCTCCTCGTCTGTTT 58.834 45.455 0.00 0.00 0.00 2.83
1009 1040 1.440938 CTCCGAACGGCGAGAGAGAT 61.441 60.000 16.62 0.00 44.57 2.75
1029 1060 3.978193 ATGCCGGCCTTTGTCCCA 61.978 61.111 26.77 0.73 0.00 4.37
1045 1076 0.397675 TGCTCGACCTCCATCTCCAT 60.398 55.000 0.00 0.00 0.00 3.41
1046 1077 1.000359 TGCTCGACCTCCATCTCCA 60.000 57.895 0.00 0.00 0.00 3.86
1047 1078 0.753479 TCTGCTCGACCTCCATCTCC 60.753 60.000 0.00 0.00 0.00 3.71
1048 1079 1.269448 GATCTGCTCGACCTCCATCTC 59.731 57.143 0.00 0.00 0.00 2.75
1049 1080 1.327303 GATCTGCTCGACCTCCATCT 58.673 55.000 0.00 0.00 0.00 2.90
1050 1081 0.316841 GGATCTGCTCGACCTCCATC 59.683 60.000 0.00 0.00 0.00 3.51
1119 1150 1.112916 TCCTGTTCTGCACGAGGACA 61.113 55.000 0.00 0.00 37.92 4.02
1177 1243 2.092753 CCTTCTCTCTTGCCATTAGCCA 60.093 50.000 0.00 0.00 42.71 4.75
1188 1254 3.707102 GGGTAGCATACACCTTCTCTCTT 59.293 47.826 0.00 0.00 45.43 2.85
1228 1294 2.158755 CCAATGGATTAGCGAAGGAGGT 60.159 50.000 0.00 0.00 0.00 3.85
1300 1366 1.137825 CGCCTCTCTTCTCGGTGAC 59.862 63.158 0.00 0.00 0.00 3.67
1314 1380 2.282958 TCCTGTCTTCGACCGCCT 60.283 61.111 0.00 0.00 0.00 5.52
1315 1381 2.126031 GTCCTGTCTTCGACCGCC 60.126 66.667 0.00 0.00 0.00 6.13
1322 1388 1.177401 GCATTTGGGGTCCTGTCTTC 58.823 55.000 0.00 0.00 0.00 2.87
1372 1438 0.249489 GATATCTGCGCCGTCTTGGT 60.249 55.000 4.18 0.00 41.21 3.67
1614 1680 3.325870 CAACCTCTTGATAACAGCGACA 58.674 45.455 0.00 0.00 0.00 4.35
1647 1713 4.141390 ACATAGGACATGACAGAAATCCCC 60.141 45.833 0.00 0.00 0.00 4.81
1882 1948 6.515272 TCAATATTTTTGTCTTGCTCCTCC 57.485 37.500 0.00 0.00 0.00 4.30
1894 1960 7.538334 TCATGTTTCTCACGCTCAATATTTTTG 59.462 33.333 0.00 0.00 0.00 2.44
2032 2101 6.222038 TCCTTGCGTAGATCTCTATGTTTT 57.778 37.500 0.00 0.00 37.68 2.43
2083 2152 5.023452 TCTTCTGAAGTCCTTGCTATACCA 58.977 41.667 16.43 0.00 0.00 3.25
2103 2172 4.255301 CTCATGCTGCTCTTCTTCTTCTT 58.745 43.478 0.00 0.00 0.00 2.52
2104 2173 3.369681 CCTCATGCTGCTCTTCTTCTTCT 60.370 47.826 0.00 0.00 0.00 2.85
2105 2174 2.937799 CCTCATGCTGCTCTTCTTCTTC 59.062 50.000 0.00 0.00 0.00 2.87
2148 2220 3.870606 CCTGAAACAGGTACGGCG 58.129 61.111 4.80 4.80 45.82 6.46
2272 2350 0.951558 AAGCTGACGAAATTGCCGTT 59.048 45.000 7.44 0.00 40.67 4.44
2278 2356 3.066203 ACGGACAAAAAGCTGACGAAATT 59.934 39.130 0.00 0.00 0.00 1.82
2287 2365 2.031157 CGATCCAAACGGACAAAAAGCT 60.031 45.455 0.00 0.00 34.62 3.74
2384 2462 5.982516 GCAAATCAATGTAAATATTGGGCGA 59.017 36.000 0.00 0.00 38.33 5.54
2557 6639 2.270352 TGTTTCGTGGCTCCATTCTT 57.730 45.000 0.00 0.00 0.00 2.52
2606 6688 1.064060 GATATTGGCTGCCGTGTTGAC 59.936 52.381 14.98 0.00 0.00 3.18
2607 6689 1.065491 AGATATTGGCTGCCGTGTTGA 60.065 47.619 14.98 0.00 0.00 3.18
2685 6767 1.043116 AATGGACTCCGCCGATGAGA 61.043 55.000 0.00 0.00 33.95 3.27
2743 6825 2.646175 CCGGCCGTCTCCTTCTTCA 61.646 63.158 26.12 0.00 0.00 3.02
2788 6870 0.537188 GTCAACAGGGCAGCTAGCTA 59.463 55.000 18.86 0.00 44.79 3.32
2803 6885 1.589630 CCCACTCATCGGACGTCAA 59.410 57.895 18.91 4.99 0.00 3.18
2804 6886 3.001902 GCCCACTCATCGGACGTCA 62.002 63.158 18.91 0.00 0.00 4.35
2805 6887 2.202756 GCCCACTCATCGGACGTC 60.203 66.667 7.13 7.13 0.00 4.34
2806 6888 3.771160 GGCCCACTCATCGGACGT 61.771 66.667 0.00 0.00 0.00 4.34
2807 6889 3.309436 TTGGCCCACTCATCGGACG 62.309 63.158 0.00 0.00 0.00 4.79
2808 6890 1.745489 GTTGGCCCACTCATCGGAC 60.745 63.158 0.00 0.00 0.00 4.79
2809 6891 2.668632 GTTGGCCCACTCATCGGA 59.331 61.111 0.00 0.00 0.00 4.55
2810 6892 2.819595 CGTTGGCCCACTCATCGG 60.820 66.667 5.29 0.00 0.00 4.18
2811 6893 2.047274 ACGTTGGCCCACTCATCG 60.047 61.111 5.29 0.00 34.62 3.84
2812 6894 1.745489 GGACGTTGGCCCACTCATC 60.745 63.158 5.29 0.24 0.00 2.92
2813 6895 2.351276 GGACGTTGGCCCACTCAT 59.649 61.111 5.29 0.00 0.00 2.90
2814 6896 4.308458 CGGACGTTGGCCCACTCA 62.308 66.667 5.29 0.00 0.00 3.41
2815 6897 3.998672 TCGGACGTTGGCCCACTC 61.999 66.667 5.29 2.07 0.00 3.51
2816 6898 4.309950 GTCGGACGTTGGCCCACT 62.310 66.667 5.29 0.00 0.00 4.00
2820 6902 4.353437 ACTCGTCGGACGTTGGCC 62.353 66.667 27.53 0.00 43.14 5.36
2821 6903 3.103911 CACTCGTCGGACGTTGGC 61.104 66.667 27.53 0.00 43.14 4.52
2952 7085 4.988598 CGCCACCACCGTCTTGCT 62.989 66.667 0.00 0.00 0.00 3.91
3074 7216 2.281761 CAACAGCAACCCTCGCCT 60.282 61.111 0.00 0.00 0.00 5.52
3184 7330 1.816074 TTTTAGGCGGATTTGCGTCT 58.184 45.000 3.67 3.67 34.38 4.18
3275 7423 2.280254 TCGGCGCGGACAGAAAAA 60.280 55.556 14.27 0.00 0.00 1.94
3449 7609 7.902920 ATGTAAATCAGCATGTAATTTCCCT 57.097 32.000 0.00 0.00 37.40 4.20
3479 7645 8.411991 AAGACAAATATTTAAAAACGGAGGGA 57.588 30.769 0.00 0.00 0.00 4.20
3480 7646 9.135843 GAAAGACAAATATTTAAAAACGGAGGG 57.864 33.333 0.00 0.00 0.00 4.30
3481 7647 9.908152 AGAAAGACAAATATTTAAAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
3492 7658 9.582431 CTGCATTCATGAGAAAGACAAATATTT 57.418 29.630 0.00 0.00 37.29 1.40
3493 7659 8.195436 CCTGCATTCATGAGAAAGACAAATATT 58.805 33.333 0.00 0.00 37.29 1.28
3494 7660 7.341256 ACCTGCATTCATGAGAAAGACAAATAT 59.659 33.333 0.00 0.00 37.29 1.28
3495 7661 6.660521 ACCTGCATTCATGAGAAAGACAAATA 59.339 34.615 0.00 0.00 37.29 1.40
3496 7662 5.479375 ACCTGCATTCATGAGAAAGACAAAT 59.521 36.000 0.00 0.00 37.29 2.32
3497 7663 4.828939 ACCTGCATTCATGAGAAAGACAAA 59.171 37.500 0.00 0.00 37.29 2.83
3498 7664 4.216902 CACCTGCATTCATGAGAAAGACAA 59.783 41.667 0.00 0.00 37.29 3.18
3499 7665 3.754850 CACCTGCATTCATGAGAAAGACA 59.245 43.478 0.00 0.00 37.29 3.41
3500 7666 3.427233 GCACCTGCATTCATGAGAAAGAC 60.427 47.826 0.00 0.00 41.59 3.01
3501 7667 2.751259 GCACCTGCATTCATGAGAAAGA 59.249 45.455 0.00 0.00 41.59 2.52
3502 7668 2.753452 AGCACCTGCATTCATGAGAAAG 59.247 45.455 0.00 0.00 45.16 2.62
3503 7669 2.490509 CAGCACCTGCATTCATGAGAAA 59.509 45.455 0.00 0.00 45.16 2.52
3504 7670 2.089201 CAGCACCTGCATTCATGAGAA 58.911 47.619 0.00 0.00 45.16 2.87
3505 7671 1.680860 CCAGCACCTGCATTCATGAGA 60.681 52.381 0.00 0.00 45.16 3.27
3506 7672 0.738975 CCAGCACCTGCATTCATGAG 59.261 55.000 0.00 0.00 45.16 2.90
3507 7673 0.038599 ACCAGCACCTGCATTCATGA 59.961 50.000 0.00 0.00 45.16 3.07
3508 7674 0.454600 GACCAGCACCTGCATTCATG 59.545 55.000 0.00 0.00 45.16 3.07
3509 7675 0.330604 AGACCAGCACCTGCATTCAT 59.669 50.000 0.00 0.00 45.16 2.57
3510 7676 0.321919 GAGACCAGCACCTGCATTCA 60.322 55.000 0.00 0.00 45.16 2.57
3511 7677 0.035630 AGAGACCAGCACCTGCATTC 60.036 55.000 0.00 0.00 45.16 2.67
3512 7678 0.035630 GAGAGACCAGCACCTGCATT 60.036 55.000 0.00 0.00 45.16 3.56
3513 7679 1.601171 GAGAGACCAGCACCTGCAT 59.399 57.895 0.00 0.00 45.16 3.96
3514 7680 2.587247 GGAGAGACCAGCACCTGCA 61.587 63.158 0.00 0.00 45.16 4.41
3515 7681 2.267324 GGAGAGACCAGCACCTGC 59.733 66.667 0.00 0.00 42.49 4.85
3516 7682 1.611851 AGGGAGAGACCAGCACCTG 60.612 63.158 0.00 0.00 41.20 4.00
3517 7683 1.305718 GAGGGAGAGACCAGCACCT 60.306 63.158 0.00 0.00 41.20 4.00
3518 7684 1.610673 TGAGGGAGAGACCAGCACC 60.611 63.158 0.00 0.00 41.20 5.01
3519 7685 1.896694 CTGAGGGAGAGACCAGCAC 59.103 63.158 0.00 0.00 41.20 4.40
3520 7686 4.449638 CTGAGGGAGAGACCAGCA 57.550 61.111 0.00 0.00 41.20 4.41
3521 7687 2.899505 GCTGAGGGAGAGACCAGC 59.100 66.667 0.00 0.00 44.00 4.85
3522 7688 2.422231 CGGCTGAGGGAGAGACCAG 61.422 68.421 0.00 0.00 41.20 4.00
3523 7689 2.363018 CGGCTGAGGGAGAGACCA 60.363 66.667 0.00 0.00 41.20 4.02
3524 7690 3.844090 GCGGCTGAGGGAGAGACC 61.844 72.222 0.00 0.00 38.08 3.85
3525 7691 3.844090 GGCGGCTGAGGGAGAGAC 61.844 72.222 0.00 0.00 0.00 3.36
3595 7761 4.144727 GAGGAGGGGAGAGGCCGA 62.145 72.222 0.00 0.00 37.63 5.54
3635 7801 1.664965 GCTTGTCGACGGCTGTCTT 60.665 57.895 22.92 0.00 43.21 3.01
3666 7832 4.394712 CTCGCCGCCACCTTCCTT 62.395 66.667 0.00 0.00 0.00 3.36
3910 8077 1.340697 TGAGATCGAACGGGAGAAGGA 60.341 52.381 0.00 0.00 0.00 3.36
3961 8128 2.265182 CCGAAACACCGCCAACCAT 61.265 57.895 0.00 0.00 0.00 3.55
4211 8379 2.431782 GCAGCCACCAATACATCCAAAT 59.568 45.455 0.00 0.00 0.00 2.32
4261 8429 2.235536 GAACCAAATCGACACGGCGG 62.236 60.000 13.24 2.35 0.00 6.13
4368 8536 0.914417 CAGGTGTACCATGGGAGGGT 60.914 60.000 18.09 0.00 42.48 4.34
4394 8562 3.552068 CCCAAGAACCCGAATTCACAAAC 60.552 47.826 6.22 0.00 0.00 2.93
4547 8715 2.290641 ACTGGACAAACATCGAACTTGC 59.709 45.455 0.00 0.00 0.00 4.01
4687 8855 1.071471 CAGAACAACCTCAGGCGGT 59.929 57.895 0.00 0.00 39.48 5.68
4724 8892 9.107177 ACATACATGCAACATGAAAAAGAAAAA 57.893 25.926 14.17 0.00 0.00 1.94
4725 8893 8.549548 CACATACATGCAACATGAAAAAGAAAA 58.450 29.630 14.17 0.00 0.00 2.29
4856 9031 9.997482 GTCACTTGTTAAAATCTACAAAGACAA 57.003 29.630 0.00 0.00 38.23 3.18
4857 9032 9.391006 AGTCACTTGTTAAAATCTACAAAGACA 57.609 29.630 15.92 0.00 39.40 3.41
4866 9041 9.701098 TTCGTATGTAGTCACTTGTTAAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
4867 9042 9.953825 CTTCGTATGTAGTCACTTGTTAAAATC 57.046 33.333 0.00 0.00 0.00 2.17
4868 9043 9.485206 ACTTCGTATGTAGTCACTTGTTAAAAT 57.515 29.630 0.00 0.00 0.00 1.82
4869 9044 8.876275 ACTTCGTATGTAGTCACTTGTTAAAA 57.124 30.769 0.00 0.00 0.00 1.52
4870 9045 9.964303 TTACTTCGTATGTAGTCACTTGTTAAA 57.036 29.630 0.00 0.00 0.00 1.52
4871 9046 9.964303 TTTACTTCGTATGTAGTCACTTGTTAA 57.036 29.630 0.00 0.00 0.00 2.01
4872 9047 9.964303 TTTTACTTCGTATGTAGTCACTTGTTA 57.036 29.630 0.00 0.00 0.00 2.41
4873 9048 8.876275 TTTTACTTCGTATGTAGTCACTTGTT 57.124 30.769 0.00 0.00 0.00 2.83
4888 9063 9.924650 AGTGTAGATTCACTTATTTTACTTCGT 57.075 29.630 0.00 0.00 44.92 3.85
4922 9097 9.741647 CTATCACATGCGAATGTATATAGACAT 57.258 33.333 22.57 7.18 41.92 3.06
4923 9098 8.739972 ACTATCACATGCGAATGTATATAGACA 58.260 33.333 28.59 2.07 35.47 3.41
4924 9099 9.574458 AACTATCACATGCGAATGTATATAGAC 57.426 33.333 28.59 0.00 35.47 2.59
4925 9100 9.788960 GAACTATCACATGCGAATGTATATAGA 57.211 33.333 28.59 16.52 35.47 1.98
4926 9101 9.573133 TGAACTATCACATGCGAATGTATATAG 57.427 33.333 24.04 24.04 36.62 1.31
4928 9103 9.440773 AATGAACTATCACATGCGAATGTATAT 57.559 29.630 9.20 8.62 38.69 0.86
4929 9104 8.831715 AATGAACTATCACATGCGAATGTATA 57.168 30.769 9.20 7.04 38.69 1.47
4930 9105 7.734924 AATGAACTATCACATGCGAATGTAT 57.265 32.000 9.20 6.25 38.69 2.29
4931 9106 7.279758 TCAAATGAACTATCACATGCGAATGTA 59.720 33.333 9.20 0.00 38.69 2.29
4932 9107 6.093909 TCAAATGAACTATCACATGCGAATGT 59.906 34.615 2.13 2.13 38.69 2.71
4933 9108 6.488817 TCAAATGAACTATCACATGCGAATG 58.511 36.000 0.40 0.40 38.69 2.67
4934 9109 6.682423 TCAAATGAACTATCACATGCGAAT 57.318 33.333 0.00 0.00 38.69 3.34
4935 9110 6.493449 TTCAAATGAACTATCACATGCGAA 57.507 33.333 0.00 0.00 38.69 4.70
4936 9111 6.539826 AGATTCAAATGAACTATCACATGCGA 59.460 34.615 0.00 0.00 38.69 5.10
4937 9112 6.722301 AGATTCAAATGAACTATCACATGCG 58.278 36.000 0.00 0.00 38.69 4.73
4938 9113 7.928103 AGAGATTCAAATGAACTATCACATGC 58.072 34.615 0.00 0.00 38.69 4.06
4964 9139 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
4965 9140 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
4966 9141 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
4967 9142 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
4968 9143 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
4969 9144 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
4970 9145 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
4971 9146 8.202137 TCTACTCCCTCCGTTTCTAAATATTTG 58.798 37.037 11.05 1.65 0.00 2.32
4972 9147 8.315220 TCTACTCCCTCCGTTTCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
4973 9148 7.909485 TCTACTCCCTCCGTTTCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
4974 9149 9.022884 GTATCTACTCCCTCCGTTTCTAAATAT 57.977 37.037 0.00 0.00 0.00 1.28
4975 9150 8.223330 AGTATCTACTCCCTCCGTTTCTAAATA 58.777 37.037 0.00 0.00 0.00 1.40
4976 9151 7.068061 AGTATCTACTCCCTCCGTTTCTAAAT 58.932 38.462 0.00 0.00 0.00 1.40
4977 9152 6.430007 AGTATCTACTCCCTCCGTTTCTAAA 58.570 40.000 0.00 0.00 0.00 1.85
4978 9153 6.011122 AGTATCTACTCCCTCCGTTTCTAA 57.989 41.667 0.00 0.00 0.00 2.10
4979 9154 5.643421 AGTATCTACTCCCTCCGTTTCTA 57.357 43.478 0.00 0.00 0.00 2.10
4980 9155 4.523168 AGTATCTACTCCCTCCGTTTCT 57.477 45.455 0.00 0.00 0.00 2.52
4981 9156 5.375773 ACTAGTATCTACTCCCTCCGTTTC 58.624 45.833 0.00 0.00 37.73 2.78
4982 9157 5.385628 ACTAGTATCTACTCCCTCCGTTT 57.614 43.478 0.00 0.00 37.73 3.60
4983 9158 6.506538 TTACTAGTATCTACTCCCTCCGTT 57.493 41.667 2.79 0.00 37.73 4.44
4984 9159 6.506538 TTTACTAGTATCTACTCCCTCCGT 57.493 41.667 2.79 0.00 37.73 4.69
4985 9160 7.501892 AGTTTTTACTAGTATCTACTCCCTCCG 59.498 40.741 2.79 0.00 37.73 4.63
4986 9161 8.765488 AGTTTTTACTAGTATCTACTCCCTCC 57.235 38.462 2.79 0.00 37.73 4.30
5041 11519 7.383687 CCGGGAGCTGTTCTATAATAAATACA 58.616 38.462 0.00 0.00 0.00 2.29
5137 11625 4.952335 ACCTTTGATAATCTTTGAGCCCTG 59.048 41.667 0.00 0.00 0.00 4.45
5163 11651 6.255453 TGTTGCTAAAACTTTGCAAGAACATC 59.745 34.615 8.20 0.00 45.55 3.06
5170 11658 7.550906 AGGTTATTTGTTGCTAAAACTTTGCAA 59.449 29.630 0.00 0.00 43.25 4.08
5181 11669 4.250464 CTCCACGAGGTTATTTGTTGCTA 58.750 43.478 0.00 0.00 35.89 3.49
5275 11765 9.769093 TTTAGCTAAAAATAACATTCGAAGAGC 57.231 29.630 16.53 0.03 38.43 4.09
5314 11804 8.729756 ACATCGAACATCATGAAACTTTTGATA 58.270 29.630 0.00 0.00 0.00 2.15
5332 11822 6.969828 ATCTGAAACTTTAGGACATCGAAC 57.030 37.500 0.00 0.00 0.00 3.95
5381 11876 5.012148 CCCCTATACCCTCAATGAACAGTAG 59.988 48.000 0.00 0.00 0.00 2.57
5392 11887 4.741647 GGTGCCCCTATACCCTCA 57.258 61.111 0.00 0.00 0.00 3.86
5399 11894 3.087906 GGACACGGGTGCCCCTAT 61.088 66.667 0.00 0.00 42.67 2.57
5405 11900 3.883744 CTGGACTGGACACGGGTGC 62.884 68.421 0.67 0.67 35.66 5.01
5406 11901 1.544825 ATCTGGACTGGACACGGGTG 61.545 60.000 0.00 0.00 0.00 4.61
5407 11902 1.229209 ATCTGGACTGGACACGGGT 60.229 57.895 0.00 0.00 0.00 5.28
5419 12413 3.081710 TCTACGTCTGGTTGATCTGGA 57.918 47.619 0.00 0.00 0.00 3.86
5466 12460 8.934023 ATTCTGTGGTTCTTTTTGGAGTATTA 57.066 30.769 0.00 0.00 0.00 0.98
5504 12498 3.134458 GCACACTTTCACTCTGTAAGCT 58.866 45.455 0.00 0.00 29.26 3.74
5529 12523 5.880054 TTGCTTACAAGAAATACCAGCTC 57.120 39.130 0.00 0.00 0.00 4.09
5552 12547 1.202031 CGCCAATCACCGTAAAAGAGC 60.202 52.381 0.00 0.00 0.00 4.09
5553 12548 2.343101 TCGCCAATCACCGTAAAAGAG 58.657 47.619 0.00 0.00 0.00 2.85
5554 12549 2.289195 ACTCGCCAATCACCGTAAAAGA 60.289 45.455 0.00 0.00 0.00 2.52
5555 12550 2.073816 ACTCGCCAATCACCGTAAAAG 58.926 47.619 0.00 0.00 0.00 2.27
5556 12551 2.172851 ACTCGCCAATCACCGTAAAA 57.827 45.000 0.00 0.00 0.00 1.52
5557 12552 2.172851 AACTCGCCAATCACCGTAAA 57.827 45.000 0.00 0.00 0.00 2.01
5558 12553 3.530265 ATAACTCGCCAATCACCGTAA 57.470 42.857 0.00 0.00 0.00 3.18
5559 12554 4.652421 TTATAACTCGCCAATCACCGTA 57.348 40.909 0.00 0.00 0.00 4.02
5560 12555 3.530265 TTATAACTCGCCAATCACCGT 57.470 42.857 0.00 0.00 0.00 4.83
5561 12556 5.637810 ACATATTATAACTCGCCAATCACCG 59.362 40.000 0.00 0.00 0.00 4.94
5562 12557 8.542497 TTACATATTATAACTCGCCAATCACC 57.458 34.615 0.00 0.00 0.00 4.02
5582 12577 8.960591 CAAAGGGAGAGTTACATGAAATTACAT 58.039 33.333 0.00 0.00 0.00 2.29
5583 12578 8.160765 TCAAAGGGAGAGTTACATGAAATTACA 58.839 33.333 0.00 0.00 0.00 2.41
5584 12579 8.561738 TCAAAGGGAGAGTTACATGAAATTAC 57.438 34.615 0.00 0.00 0.00 1.89
5585 12580 9.753674 AATCAAAGGGAGAGTTACATGAAATTA 57.246 29.630 0.00 0.00 0.00 1.40
5586 12581 8.655935 AATCAAAGGGAGAGTTACATGAAATT 57.344 30.769 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.