Multiple sequence alignment - TraesCS7A01G371800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G371800 chr7A 100.000 3093 0 0 1 3093 545544948 545541856 0.000000e+00 5712
1 TraesCS7A01G371800 chr7D 86.048 1326 116 37 1668 2971 451972374 451973652 0.000000e+00 1360
2 TraesCS7A01G371800 chr7D 84.790 881 59 36 829 1674 451971505 451972345 0.000000e+00 815
3 TraesCS7A01G371800 chr7D 76.549 678 109 31 26 678 451970076 451970728 2.970000e-85 326
4 TraesCS7A01G371800 chr7D 92.857 126 4 3 2970 3090 451973713 451973838 8.810000e-41 178
5 TraesCS7A01G371800 chr7B 87.909 703 44 21 883 1554 474408078 474408770 0.000000e+00 789
6 TraesCS7A01G371800 chr7B 86.178 709 64 15 2256 2963 474411437 474412112 0.000000e+00 736
7 TraesCS7A01G371800 chr7B 78.603 673 96 28 15 678 474406611 474407244 4.800000e-108 401
8 TraesCS7A01G371800 chr7B 85.106 376 39 13 1668 2039 474408888 474409250 4.870000e-98 368
9 TraesCS7A01G371800 chr7B 91.414 198 15 1 2044 2241 474409286 474409481 1.410000e-68 270
10 TraesCS7A01G371800 chr7B 90.441 136 6 5 2961 3090 474412174 474412308 4.100000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G371800 chr7A 545541856 545544948 3092 True 5712.00 5712 100.0000 1 3093 1 chr7A.!!$R1 3092
1 TraesCS7A01G371800 chr7D 451970076 451973838 3762 False 669.75 1360 85.0610 26 3090 4 chr7D.!!$F1 3064
2 TraesCS7A01G371800 chr7B 474406611 474412308 5697 False 456.00 789 86.6085 15 3090 6 chr7B.!!$F1 3075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 1490 0.035439 TGGCATTCCTTCGGAGTTCC 60.035 55.0 0.0 0.0 31.21 3.62 F
853 1549 0.096976 CACCATTTCATCGGTGCGTC 59.903 55.0 0.0 0.0 45.77 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 2525 0.179018 GCCATGGGTGGGTCTGATAC 60.179 60.0 15.13 0.0 46.14 2.24 R
2343 5084 0.248565 GTCTGGTAACCGTTCTCCCC 59.751 60.0 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.359262 TGTTACTATTCATGTCTTTGGTTCG 57.641 36.000 0.00 0.00 0.00 3.95
53 55 0.958382 TGGTTCGAAGAAATGGGGCG 60.958 55.000 0.00 0.00 45.90 6.13
54 56 0.675522 GGTTCGAAGAAATGGGGCGA 60.676 55.000 0.00 0.00 45.90 5.54
56 58 1.130561 GTTCGAAGAAATGGGGCGAAG 59.869 52.381 0.00 0.00 45.90 3.79
62 64 2.820178 AGAAATGGGGCGAAGGAAAAT 58.180 42.857 0.00 0.00 0.00 1.82
69 71 0.817654 GGCGAAGGAAAATTGGAGGG 59.182 55.000 0.00 0.00 0.00 4.30
107 110 3.191669 CCGGTTTCAAAGGAAAAACACC 58.808 45.455 0.00 0.00 44.18 4.16
108 111 3.191669 CGGTTTCAAAGGAAAAACACCC 58.808 45.455 0.00 0.00 44.18 4.61
111 114 4.634004 GGTTTCAAAGGAAAAACACCCAAG 59.366 41.667 0.00 0.00 44.18 3.61
122 125 3.904800 AACACCCAAGTTTTCCTTTGG 57.095 42.857 0.00 0.00 40.92 3.28
124 127 1.484240 CACCCAAGTTTTCCTTTGGCA 59.516 47.619 0.00 0.00 39.14 4.92
130 133 4.273235 CCAAGTTTTCCTTTGGCAATGTTC 59.727 41.667 0.00 0.00 0.00 3.18
140 143 6.894654 TCCTTTGGCAATGTTCATTAGGATTA 59.105 34.615 8.55 0.00 0.00 1.75
160 163 2.654863 ACCTGTGTTTTCCAGTTCCAG 58.345 47.619 0.00 0.00 0.00 3.86
175 178 3.509575 AGTTCCAGTGAAACAAACAGCAA 59.490 39.130 0.00 0.00 41.43 3.91
192 195 3.190118 CAGCAAAGTTGACAGAATCCCTC 59.810 47.826 0.00 0.00 0.00 4.30
194 197 4.287067 AGCAAAGTTGACAGAATCCCTCTA 59.713 41.667 0.00 0.00 31.12 2.43
195 198 5.003804 GCAAAGTTGACAGAATCCCTCTAA 58.996 41.667 0.00 0.00 31.12 2.10
196 199 5.123027 GCAAAGTTGACAGAATCCCTCTAAG 59.877 44.000 0.00 0.00 31.12 2.18
197 200 6.467677 CAAAGTTGACAGAATCCCTCTAAGA 58.532 40.000 0.00 0.00 31.12 2.10
198 201 5.669164 AGTTGACAGAATCCCTCTAAGAC 57.331 43.478 0.00 0.00 31.12 3.01
199 202 4.468153 AGTTGACAGAATCCCTCTAAGACC 59.532 45.833 0.00 0.00 31.12 3.85
201 204 3.245984 TGACAGAATCCCTCTAAGACCCA 60.246 47.826 0.00 0.00 31.12 4.51
202 205 3.108376 ACAGAATCCCTCTAAGACCCAC 58.892 50.000 0.00 0.00 31.12 4.61
214 225 0.773644 AGACCCACATGTTTCTGGCT 59.226 50.000 0.00 0.00 0.00 4.75
215 226 1.985159 AGACCCACATGTTTCTGGCTA 59.015 47.619 0.00 0.00 0.00 3.93
216 227 2.026822 AGACCCACATGTTTCTGGCTAG 60.027 50.000 0.00 0.00 0.00 3.42
217 228 1.705186 ACCCACATGTTTCTGGCTAGT 59.295 47.619 0.00 0.00 0.00 2.57
218 229 2.910319 ACCCACATGTTTCTGGCTAGTA 59.090 45.455 0.00 0.00 0.00 1.82
219 230 3.055094 ACCCACATGTTTCTGGCTAGTAG 60.055 47.826 0.00 0.00 0.00 2.57
220 231 3.535561 CCACATGTTTCTGGCTAGTAGG 58.464 50.000 0.00 0.00 0.00 3.18
221 232 3.197766 CCACATGTTTCTGGCTAGTAGGA 59.802 47.826 0.00 0.00 0.00 2.94
222 233 4.437239 CACATGTTTCTGGCTAGTAGGAG 58.563 47.826 0.00 0.00 0.00 3.69
243 254 4.489810 AGTACTTCAGATGCAGTTTCTCG 58.510 43.478 0.00 0.00 0.00 4.04
253 264 2.030185 TGCAGTTTCTCGGAGACTGTAC 60.030 50.000 21.15 12.16 43.68 2.90
256 267 3.253677 CAGTTTCTCGGAGACTGTACTGT 59.746 47.826 19.95 4.92 39.12 3.55
257 268 3.890147 AGTTTCTCGGAGACTGTACTGTT 59.110 43.478 7.33 0.00 0.00 3.16
258 269 3.917329 TTCTCGGAGACTGTACTGTTG 57.083 47.619 7.33 0.00 0.00 3.33
259 270 2.160205 TCTCGGAGACTGTACTGTTGG 58.840 52.381 2.97 0.00 0.00 3.77
260 271 0.601558 TCGGAGACTGTACTGTTGGC 59.398 55.000 6.86 0.34 0.00 4.52
262 273 1.066858 CGGAGACTGTACTGTTGGCAT 60.067 52.381 6.86 0.00 0.00 4.40
263 274 2.350522 GGAGACTGTACTGTTGGCATG 58.649 52.381 6.86 0.00 0.00 4.06
265 276 2.996621 GAGACTGTACTGTTGGCATGAC 59.003 50.000 6.86 0.00 0.00 3.06
266 277 2.368548 AGACTGTACTGTTGGCATGACA 59.631 45.455 0.00 0.00 0.00 3.58
267 278 3.138304 GACTGTACTGTTGGCATGACAA 58.862 45.455 10.79 10.79 0.00 3.18
268 279 3.141398 ACTGTACTGTTGGCATGACAAG 58.859 45.455 16.10 6.45 0.00 3.16
269 280 1.879380 TGTACTGTTGGCATGACAAGC 59.121 47.619 16.10 10.45 0.00 4.01
278 289 2.531522 GCATGACAAGCCTTTTTGGT 57.468 45.000 0.00 0.00 38.35 3.67
283 294 3.219281 TGACAAGCCTTTTTGGTAGTCC 58.781 45.455 0.00 0.00 38.35 3.85
284 295 3.219281 GACAAGCCTTTTTGGTAGTCCA 58.781 45.455 0.00 0.00 42.66 4.02
285 296 3.826729 GACAAGCCTTTTTGGTAGTCCAT 59.173 43.478 0.00 0.00 43.91 3.41
286 297 3.573967 ACAAGCCTTTTTGGTAGTCCATG 59.426 43.478 0.00 0.00 43.91 3.66
293 304 4.782019 TTTTGGTAGTCCATGCATGAAC 57.218 40.909 28.31 19.04 43.91 3.18
308 319 1.557099 TGAACGGACCTGCAGATAGT 58.443 50.000 17.39 4.20 0.00 2.12
312 323 5.077564 TGAACGGACCTGCAGATAGTATAT 58.922 41.667 17.39 0.00 0.00 0.86
313 324 6.243148 TGAACGGACCTGCAGATAGTATATA 58.757 40.000 17.39 0.00 0.00 0.86
315 326 7.396339 TGAACGGACCTGCAGATAGTATATAAT 59.604 37.037 17.39 0.00 0.00 1.28
317 328 8.818622 ACGGACCTGCAGATAGTATATAATTA 57.181 34.615 17.39 0.00 0.00 1.40
319 330 9.737427 CGGACCTGCAGATAGTATATAATTAAG 57.263 37.037 17.39 0.00 0.00 1.85
374 391 2.507992 CCGGAGCTTCTCGTGCAG 60.508 66.667 0.00 0.00 0.00 4.41
382 399 0.096628 CTTCTCGTGCAGCATTCAGC 59.903 55.000 0.00 0.00 46.19 4.26
400 421 6.539649 TTCAGCGGAATTATATTGTACTGC 57.460 37.500 0.00 0.00 0.00 4.40
402 423 4.997395 CAGCGGAATTATATTGTACTGCCT 59.003 41.667 0.00 0.00 0.00 4.75
403 424 5.120830 CAGCGGAATTATATTGTACTGCCTC 59.879 44.000 0.00 0.00 0.00 4.70
404 425 5.012148 AGCGGAATTATATTGTACTGCCTCT 59.988 40.000 0.00 0.00 0.00 3.69
407 428 6.706270 CGGAATTATATTGTACTGCCTCTGTT 59.294 38.462 0.00 0.00 0.00 3.16
408 429 7.307396 CGGAATTATATTGTACTGCCTCTGTTG 60.307 40.741 0.00 0.00 0.00 3.33
409 430 7.715249 GGAATTATATTGTACTGCCTCTGTTGA 59.285 37.037 0.00 0.00 0.00 3.18
412 433 2.820059 TGTACTGCCTCTGTTGAGTG 57.180 50.000 0.00 0.00 38.61 3.51
413 434 2.039418 TGTACTGCCTCTGTTGAGTGT 58.961 47.619 0.00 0.00 38.61 3.55
414 435 2.434336 TGTACTGCCTCTGTTGAGTGTT 59.566 45.455 0.00 0.00 38.61 3.32
415 436 1.959042 ACTGCCTCTGTTGAGTGTTG 58.041 50.000 0.00 0.00 38.61 3.33
416 437 1.486310 ACTGCCTCTGTTGAGTGTTGA 59.514 47.619 0.00 0.00 38.61 3.18
417 438 1.869767 CTGCCTCTGTTGAGTGTTGAC 59.130 52.381 0.00 0.00 38.61 3.18
418 439 1.230324 GCCTCTGTTGAGTGTTGACC 58.770 55.000 0.00 0.00 38.61 4.02
420 441 2.487934 CCTCTGTTGAGTGTTGACCAG 58.512 52.381 0.00 0.00 38.61 4.00
424 445 1.339535 TGTTGAGTGTTGACCAGCACA 60.340 47.619 17.01 0.00 43.70 4.57
425 446 1.742831 GTTGAGTGTTGACCAGCACAA 59.257 47.619 17.01 4.54 43.70 3.33
426 447 2.346766 TGAGTGTTGACCAGCACAAT 57.653 45.000 17.01 0.05 43.70 2.71
442 481 2.164422 CACAATCTAGCGTGGTCTGAGA 59.836 50.000 0.00 0.00 0.00 3.27
452 491 2.125753 GTCTGAGACCTGCAGGCG 60.126 66.667 33.06 15.46 39.32 5.52
453 492 3.385384 TCTGAGACCTGCAGGCGG 61.385 66.667 33.06 20.74 39.32 6.13
456 495 4.400961 GAGACCTGCAGGCGGCTT 62.401 66.667 33.06 13.19 45.15 4.35
457 496 4.711949 AGACCTGCAGGCGGCTTG 62.712 66.667 33.06 7.85 45.15 4.01
471 510 1.363744 GGCTTGTGGATCGAGTCAAG 58.636 55.000 13.49 13.49 39.83 3.02
488 527 3.986006 GCGGACCTGGACACGTGA 61.986 66.667 25.01 0.00 0.00 4.35
490 529 1.068417 CGGACCTGGACACGTGAAA 59.932 57.895 25.01 5.97 0.00 2.69
497 536 5.217978 ACCTGGACACGTGAAAGTTATTA 57.782 39.130 25.01 0.00 0.00 0.98
504 543 2.940410 ACGTGAAAGTTATTATGCCGGG 59.060 45.455 2.18 0.00 0.00 5.73
505 544 3.199677 CGTGAAAGTTATTATGCCGGGA 58.800 45.455 2.18 0.00 0.00 5.14
506 545 3.813166 CGTGAAAGTTATTATGCCGGGAT 59.187 43.478 14.76 14.76 0.00 3.85
507 546 4.319477 CGTGAAAGTTATTATGCCGGGATG 60.319 45.833 20.08 0.00 0.00 3.51
508 547 4.819630 GTGAAAGTTATTATGCCGGGATGA 59.180 41.667 20.08 11.46 0.00 2.92
514 553 1.059098 TTATGCCGGGATGAGATGCT 58.941 50.000 20.08 0.00 0.00 3.79
519 558 1.502231 CCGGGATGAGATGCTAAACG 58.498 55.000 0.00 0.00 0.00 3.60
520 559 1.202533 CCGGGATGAGATGCTAAACGT 60.203 52.381 0.00 0.00 0.00 3.99
528 567 3.987868 TGAGATGCTAAACGTGTCTTGTC 59.012 43.478 0.00 0.00 0.00 3.18
529 568 3.987868 GAGATGCTAAACGTGTCTTGTCA 59.012 43.478 0.00 0.00 0.00 3.58
536 575 0.814010 ACGTGTCTTGTCACAAGGCC 60.814 55.000 19.51 9.75 38.12 5.19
553 592 1.441311 CCTTGTTGGTGGTGGTTGC 59.559 57.895 0.00 0.00 0.00 4.17
592 632 6.942976 AGTTAATGAGGACAAACGAGGATTA 58.057 36.000 0.00 0.00 0.00 1.75
593 633 7.565680 AGTTAATGAGGACAAACGAGGATTAT 58.434 34.615 0.00 0.00 0.00 1.28
594 634 8.047310 AGTTAATGAGGACAAACGAGGATTATT 58.953 33.333 0.00 0.00 0.00 1.40
595 635 8.674607 GTTAATGAGGACAAACGAGGATTATTT 58.325 33.333 0.00 0.00 0.00 1.40
626 666 2.945668 GAGTTCATGGTGGTGGATAAGC 59.054 50.000 0.00 0.00 0.00 3.09
644 684 2.358939 GCAAGGGTCAATGCTCTTTG 57.641 50.000 0.00 0.00 39.46 2.77
653 693 1.134610 CAATGCTCTTTGATTGGCCCC 60.135 52.381 0.00 0.00 0.00 5.80
661 701 1.559368 TTGATTGGCCCCTTGATGTG 58.441 50.000 0.00 0.00 0.00 3.21
665 705 1.303898 TTGGCCCCTTGATGTGGATA 58.696 50.000 0.00 0.00 0.00 2.59
673 713 2.291465 CCTTGATGTGGATATGCCGTTG 59.709 50.000 0.00 0.00 40.66 4.10
674 714 1.308047 TGATGTGGATATGCCGTTGC 58.692 50.000 0.00 0.00 40.66 4.17
676 716 0.183492 ATGTGGATATGCCGTTGCCT 59.817 50.000 0.00 0.00 40.66 4.75
677 717 0.463654 TGTGGATATGCCGTTGCCTC 60.464 55.000 0.00 0.00 40.66 4.70
678 718 1.227527 TGGATATGCCGTTGCCTCG 60.228 57.895 0.00 0.00 40.66 4.63
679 719 1.069090 GGATATGCCGTTGCCTCGA 59.931 57.895 0.00 0.00 36.33 4.04
680 720 0.320771 GGATATGCCGTTGCCTCGAT 60.321 55.000 0.00 0.00 36.33 3.59
681 721 1.512926 GATATGCCGTTGCCTCGATT 58.487 50.000 0.00 0.00 36.33 3.34
682 722 1.873591 GATATGCCGTTGCCTCGATTT 59.126 47.619 0.00 0.00 36.33 2.17
683 723 1.013596 TATGCCGTTGCCTCGATTTG 58.986 50.000 0.00 0.00 36.33 2.32
684 724 0.676466 ATGCCGTTGCCTCGATTTGA 60.676 50.000 0.00 0.00 36.33 2.69
704 746 5.718649 TGATCTTTTCCGACGATTGATTC 57.281 39.130 0.00 0.00 0.00 2.52
712 754 4.102561 CGATTGATTCGCCGTGGA 57.897 55.556 0.00 0.00 41.69 4.02
713 755 1.927210 CGATTGATTCGCCGTGGAG 59.073 57.895 0.00 0.00 41.69 3.86
714 756 0.527600 CGATTGATTCGCCGTGGAGA 60.528 55.000 0.00 0.00 41.69 3.71
715 757 1.212616 GATTGATTCGCCGTGGAGAG 58.787 55.000 0.00 0.00 0.00 3.20
716 758 0.179073 ATTGATTCGCCGTGGAGAGG 60.179 55.000 0.00 0.00 0.00 3.69
717 759 2.107141 GATTCGCCGTGGAGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
718 760 2.363795 ATTCGCCGTGGAGAGGGA 60.364 61.111 0.00 0.00 0.00 4.20
720 762 2.032860 ATTCGCCGTGGAGAGGGATG 62.033 60.000 0.00 0.00 0.00 3.51
721 763 4.227134 CGCCGTGGAGAGGGATGG 62.227 72.222 0.00 0.00 0.00 3.51
722 764 4.554036 GCCGTGGAGAGGGATGGC 62.554 72.222 0.00 0.00 37.10 4.40
723 765 3.866582 CCGTGGAGAGGGATGGCC 61.867 72.222 0.00 0.00 0.00 5.36
724 766 4.227134 CGTGGAGAGGGATGGCCG 62.227 72.222 0.00 0.00 33.83 6.13
725 767 3.866582 GTGGAGAGGGATGGCCGG 61.867 72.222 0.00 0.00 33.83 6.13
743 785 3.461773 CGGAGGTCGTGCTCCCAT 61.462 66.667 0.00 0.00 36.44 4.00
746 788 2.284625 AGGTCGTGCTCCCATGGA 60.285 61.111 15.22 0.00 0.00 3.41
747 789 1.690219 GAGGTCGTGCTCCCATGGAT 61.690 60.000 15.22 0.00 0.00 3.41
748 790 1.524621 GGTCGTGCTCCCATGGATG 60.525 63.158 15.22 6.44 0.00 3.51
749 791 2.182842 GTCGTGCTCCCATGGATGC 61.183 63.158 15.22 17.07 0.00 3.91
760 927 3.125316 CCCATGGATGCGCAAAAATAAG 58.875 45.455 17.11 0.29 0.00 1.73
761 928 3.430651 CCCATGGATGCGCAAAAATAAGT 60.431 43.478 17.11 0.00 0.00 2.24
762 929 3.552699 CCATGGATGCGCAAAAATAAGTG 59.447 43.478 17.11 5.62 0.00 3.16
763 930 3.932545 TGGATGCGCAAAAATAAGTGT 57.067 38.095 17.11 0.00 0.00 3.55
764 931 3.832276 TGGATGCGCAAAAATAAGTGTC 58.168 40.909 17.11 2.38 0.00 3.67
765 932 2.845967 GGATGCGCAAAAATAAGTGTCG 59.154 45.455 17.11 0.00 0.00 4.35
766 933 1.680668 TGCGCAAAAATAAGTGTCGC 58.319 45.000 8.16 0.00 39.25 5.19
769 936 2.469516 GCGCAAAAATAAGTGTCGCAAA 59.530 40.909 0.30 0.00 38.90 3.68
770 937 3.420417 GCGCAAAAATAAGTGTCGCAAAG 60.420 43.478 0.30 0.00 38.90 2.77
772 939 4.048504 GCAAAAATAAGTGTCGCAAAGGT 58.951 39.130 0.00 0.00 0.00 3.50
773 940 4.506288 GCAAAAATAAGTGTCGCAAAGGTT 59.494 37.500 0.00 0.00 0.00 3.50
774 941 5.332280 GCAAAAATAAGTGTCGCAAAGGTTC 60.332 40.000 0.00 0.00 0.00 3.62
776 943 4.749245 AATAAGTGTCGCAAAGGTTCAG 57.251 40.909 0.00 0.00 0.00 3.02
777 944 2.325583 AAGTGTCGCAAAGGTTCAGA 57.674 45.000 0.00 0.00 0.00 3.27
778 945 1.871080 AGTGTCGCAAAGGTTCAGAG 58.129 50.000 0.00 0.00 0.00 3.35
780 947 1.795286 GTGTCGCAAAGGTTCAGAGAG 59.205 52.381 0.00 0.00 0.00 3.20
781 948 1.686587 TGTCGCAAAGGTTCAGAGAGA 59.313 47.619 0.00 0.00 0.00 3.10
782 949 2.288457 TGTCGCAAAGGTTCAGAGAGAG 60.288 50.000 0.00 0.00 0.00 3.20
783 950 1.074752 CGCAAAGGTTCAGAGAGAGC 58.925 55.000 0.00 0.00 0.00 4.09
784 951 1.606480 CGCAAAGGTTCAGAGAGAGCA 60.606 52.381 0.00 0.00 0.00 4.26
785 952 2.075338 GCAAAGGTTCAGAGAGAGCAG 58.925 52.381 0.00 0.00 0.00 4.24
787 954 3.737850 CAAAGGTTCAGAGAGAGCAGTT 58.262 45.455 0.00 0.00 0.00 3.16
788 955 3.399440 AAGGTTCAGAGAGAGCAGTTG 57.601 47.619 0.00 0.00 0.00 3.16
806 1490 0.035439 TGGCATTCCTTCGGAGTTCC 60.035 55.000 0.00 0.00 31.21 3.62
822 1506 1.792367 GTTCCGGCATTTTTGCACTTC 59.208 47.619 0.00 0.00 36.33 3.01
846 1542 4.627611 AAATGCTCTCACCATTTCATCG 57.372 40.909 0.00 0.00 38.19 3.84
853 1549 0.096976 CACCATTTCATCGGTGCGTC 59.903 55.000 0.00 0.00 45.77 5.19
854 1550 1.024579 ACCATTTCATCGGTGCGTCC 61.025 55.000 0.00 0.00 33.05 4.79
855 1551 0.744414 CCATTTCATCGGTGCGTCCT 60.744 55.000 0.00 0.00 0.00 3.85
856 1552 0.374758 CATTTCATCGGTGCGTCCTG 59.625 55.000 0.00 0.00 0.00 3.86
857 1553 1.369091 ATTTCATCGGTGCGTCCTGC 61.369 55.000 0.00 0.00 46.70 4.85
861 1557 2.431454 ATCGGTGCGTCCTGCCATA 61.431 57.895 0.00 0.00 45.60 2.74
862 1558 1.758440 ATCGGTGCGTCCTGCCATAT 61.758 55.000 0.00 0.00 45.60 1.78
863 1559 1.523711 CGGTGCGTCCTGCCATATT 60.524 57.895 0.00 0.00 45.60 1.28
864 1560 1.095228 CGGTGCGTCCTGCCATATTT 61.095 55.000 0.00 0.00 45.60 1.40
865 1561 1.808512 CGGTGCGTCCTGCCATATTTA 60.809 52.381 0.00 0.00 45.60 1.40
866 1562 1.602377 GGTGCGTCCTGCCATATTTAC 59.398 52.381 0.00 0.00 45.60 2.01
867 1563 1.602377 GTGCGTCCTGCCATATTTACC 59.398 52.381 0.00 0.00 45.60 2.85
868 1564 1.210722 TGCGTCCTGCCATATTTACCA 59.789 47.619 0.00 0.00 45.60 3.25
869 1565 2.158682 TGCGTCCTGCCATATTTACCAT 60.159 45.455 0.00 0.00 45.60 3.55
870 1566 2.226437 GCGTCCTGCCATATTTACCATG 59.774 50.000 0.00 0.00 37.76 3.66
872 1568 3.882888 CGTCCTGCCATATTTACCATGTT 59.117 43.478 0.00 0.00 0.00 2.71
877 1573 6.212388 TCCTGCCATATTTACCATGTTTGTTT 59.788 34.615 0.00 0.00 0.00 2.83
879 1575 6.997655 TGCCATATTTACCATGTTTGTTTGA 58.002 32.000 0.00 0.00 0.00 2.69
880 1576 7.445121 TGCCATATTTACCATGTTTGTTTGAA 58.555 30.769 0.00 0.00 0.00 2.69
881 1577 7.933577 TGCCATATTTACCATGTTTGTTTGAAA 59.066 29.630 0.00 0.00 0.00 2.69
895 1591 8.072567 TGTTTGTTTGAAAACCAAAACAATCAG 58.927 29.630 16.17 0.00 45.40 2.90
905 1601 4.142182 ACCAAAACAATCAGTCACACCTTG 60.142 41.667 0.00 0.00 0.00 3.61
913 1609 0.820891 AGTCACACCTTGCTTGCAGG 60.821 55.000 0.00 0.00 37.45 4.85
916 1612 0.963962 CACACCTTGCTTGCAGGAAT 59.036 50.000 0.00 0.00 35.14 3.01
951 1647 2.912956 TGGCAAGAGTATCCAAACCTCT 59.087 45.455 0.00 0.00 37.16 3.69
952 1648 3.274288 GGCAAGAGTATCCAAACCTCTG 58.726 50.000 0.00 0.00 35.79 3.35
966 1662 5.182001 CCAAACCTCTGGACAGAAAGTTATG 59.818 44.000 14.23 13.56 38.96 1.90
1047 1743 0.814010 AGGACACTGAACAACCACGC 60.814 55.000 0.00 0.00 0.00 5.34
1055 1751 6.288294 ACACTGAACAACCACGCATATATAT 58.712 36.000 0.00 0.00 0.00 0.86
1056 1752 7.438564 ACACTGAACAACCACGCATATATATA 58.561 34.615 0.00 0.00 0.00 0.86
1058 1754 8.435430 CACTGAACAACCACGCATATATATAAG 58.565 37.037 0.00 0.00 0.00 1.73
1059 1755 7.117812 ACTGAACAACCACGCATATATATAAGC 59.882 37.037 9.44 9.44 0.00 3.09
1060 1756 7.158697 TGAACAACCACGCATATATATAAGCT 58.841 34.615 15.78 3.22 0.00 3.74
1061 1757 8.308207 TGAACAACCACGCATATATATAAGCTA 58.692 33.333 15.78 0.00 0.00 3.32
1062 1758 8.703604 AACAACCACGCATATATATAAGCTAG 57.296 34.615 15.78 9.06 0.00 3.42
1064 1760 8.963725 ACAACCACGCATATATATAAGCTAGTA 58.036 33.333 15.78 0.00 0.00 1.82
1084 1780 7.600752 GCTAGTATCATCTTAATCCTGGTGTTC 59.399 40.741 0.00 0.00 0.00 3.18
1088 1784 7.639062 ATCATCTTAATCCTGGTGTTCCTAT 57.361 36.000 0.00 0.00 34.23 2.57
1089 1785 7.067496 TCATCTTAATCCTGGTGTTCCTATC 57.933 40.000 0.00 0.00 34.23 2.08
1090 1786 5.531122 TCTTAATCCTGGTGTTCCTATCG 57.469 43.478 0.00 0.00 34.23 2.92
1118 1814 3.863142 AACCAATCAAGCTCAAGATGC 57.137 42.857 0.00 0.00 0.00 3.91
1124 1820 0.452184 CAAGCTCAAGATGCCTGCTG 59.548 55.000 0.00 0.00 33.96 4.41
1126 1822 1.378250 GCTCAAGATGCCTGCTGGT 60.378 57.895 11.69 0.00 35.27 4.00
1128 1824 0.809385 CTCAAGATGCCTGCTGGTTG 59.191 55.000 11.69 7.80 35.27 3.77
1201 1897 1.266989 GGGTTTCTTTCTCTTGCACCG 59.733 52.381 0.00 0.00 0.00 4.94
1270 1966 6.317140 ACATTGTTATCACTGGTAATCTGCTG 59.683 38.462 0.00 0.00 0.00 4.41
1280 1982 4.825422 TGGTAATCTGCTGAAACTCTCTG 58.175 43.478 0.00 0.00 0.00 3.35
1338 2045 5.581126 TTGACATGCTTTTGGCTATTAGG 57.419 39.130 0.00 0.00 42.39 2.69
1339 2046 4.854173 TGACATGCTTTTGGCTATTAGGA 58.146 39.130 0.00 0.00 42.39 2.94
1358 2065 0.322816 AGAGATTGTGCCGCCATGTT 60.323 50.000 0.00 0.00 0.00 2.71
1376 2083 3.061322 TGTTTTGCTTTGCATCATCAGC 58.939 40.909 0.00 0.00 38.76 4.26
1381 2088 1.475280 GCTTTGCATCATCAGCCTTCA 59.525 47.619 0.00 0.00 0.00 3.02
1386 2093 2.490509 TGCATCATCAGCCTTCAAACAG 59.509 45.455 0.00 0.00 0.00 3.16
1421 2129 6.654582 ACATACATTGTTACAAGTCATGCTGA 59.345 34.615 3.63 0.00 33.74 4.26
1422 2130 5.618056 ACATTGTTACAAGTCATGCTGAG 57.382 39.130 3.63 0.00 0.00 3.35
1423 2131 4.456911 ACATTGTTACAAGTCATGCTGAGG 59.543 41.667 3.63 0.00 0.00 3.86
1547 2279 5.063438 TGTGAAAAGTGCTGCGAGTAATATC 59.937 40.000 0.00 0.00 0.00 1.63
1554 2286 4.208047 GTGCTGCGAGTAATATCAAGTCTG 59.792 45.833 0.00 0.00 0.00 3.51
1555 2287 4.142160 TGCTGCGAGTAATATCAAGTCTGT 60.142 41.667 0.00 0.00 0.00 3.41
1556 2288 5.067283 TGCTGCGAGTAATATCAAGTCTGTA 59.933 40.000 0.00 0.00 0.00 2.74
1557 2289 5.977725 GCTGCGAGTAATATCAAGTCTGTAA 59.022 40.000 0.00 0.00 0.00 2.41
1558 2290 6.475727 GCTGCGAGTAATATCAAGTCTGTAAA 59.524 38.462 0.00 0.00 0.00 2.01
1559 2291 7.010183 GCTGCGAGTAATATCAAGTCTGTAAAA 59.990 37.037 0.00 0.00 0.00 1.52
1560 2292 8.181487 TGCGAGTAATATCAAGTCTGTAAAAC 57.819 34.615 0.00 0.00 0.00 2.43
1561 2293 7.277098 TGCGAGTAATATCAAGTCTGTAAAACC 59.723 37.037 0.00 0.00 0.00 3.27
1562 2294 7.514747 GCGAGTAATATCAAGTCTGTAAAACCG 60.515 40.741 0.00 0.00 0.00 4.44
1563 2295 7.487189 CGAGTAATATCAAGTCTGTAAAACCGT 59.513 37.037 0.00 0.00 0.00 4.83
1564 2296 9.793252 GAGTAATATCAAGTCTGTAAAACCGTA 57.207 33.333 0.00 0.00 0.00 4.02
1568 2300 8.873215 ATATCAAGTCTGTAAAACCGTATCAG 57.127 34.615 0.00 0.00 0.00 2.90
1569 2301 5.475719 TCAAGTCTGTAAAACCGTATCAGG 58.524 41.667 0.00 0.00 37.30 3.86
1570 2302 5.244402 TCAAGTCTGTAAAACCGTATCAGGA 59.756 40.000 0.00 0.00 34.73 3.86
1571 2303 5.934402 AGTCTGTAAAACCGTATCAGGAT 57.066 39.130 0.00 0.00 34.73 3.24
1572 2304 5.661458 AGTCTGTAAAACCGTATCAGGATG 58.339 41.667 0.00 0.00 34.73 3.51
1573 2305 5.187186 AGTCTGTAAAACCGTATCAGGATGT 59.813 40.000 0.00 0.00 37.40 3.06
1574 2306 5.291128 GTCTGTAAAACCGTATCAGGATGTG 59.709 44.000 0.00 0.00 37.40 3.21
1575 2307 5.046878 TCTGTAAAACCGTATCAGGATGTGT 60.047 40.000 0.00 0.00 37.40 3.72
1576 2308 5.172934 TGTAAAACCGTATCAGGATGTGTC 58.827 41.667 0.00 0.00 37.40 3.67
1577 2309 4.553330 AAAACCGTATCAGGATGTGTCT 57.447 40.909 0.00 0.00 37.40 3.41
1584 2316 5.171476 CGTATCAGGATGTGTCTTCACTTT 58.829 41.667 0.00 0.00 44.14 2.66
1585 2317 5.062683 CGTATCAGGATGTGTCTTCACTTTG 59.937 44.000 0.00 0.00 44.14 2.77
1586 2318 3.141398 TCAGGATGTGTCTTCACTTTGC 58.859 45.455 0.00 0.00 44.14 3.68
1615 2347 3.769844 TGGGAACAAGACAGGAGATACTC 59.230 47.826 0.00 0.00 37.44 2.59
1630 2362 0.830444 TACTCCCGGTGTGCTGTCTT 60.830 55.000 0.00 0.00 0.00 3.01
1649 2381 7.144722 TGTCTTGGCATGATTTTGTAGTAAG 57.855 36.000 6.35 0.00 0.00 2.34
1650 2382 6.714810 TGTCTTGGCATGATTTTGTAGTAAGT 59.285 34.615 6.35 0.00 0.00 2.24
1651 2383 7.880713 TGTCTTGGCATGATTTTGTAGTAAGTA 59.119 33.333 6.35 0.00 0.00 2.24
1652 2384 8.391106 GTCTTGGCATGATTTTGTAGTAAGTAG 58.609 37.037 6.35 0.00 0.00 2.57
1668 2400 9.319143 GTAGTAAGTAGTACATCGGAAAGTCTA 57.681 37.037 2.52 0.00 34.88 2.59
1689 2455 7.041780 AGTCTAAGTTTTCAGTTGTGCTGTATG 60.042 37.037 0.00 0.00 45.23 2.39
1700 2466 5.825679 AGTTGTGCTGTATGTTACTTTTCCA 59.174 36.000 0.00 0.00 0.00 3.53
1708 2474 8.512138 GCTGTATGTTACTTTTCCAATAACACT 58.488 33.333 0.00 0.00 40.58 3.55
1709 2475 9.825972 CTGTATGTTACTTTTCCAATAACACTG 57.174 33.333 0.00 0.00 40.58 3.66
1743 2509 7.013178 TGTTACTTTGAAGCAACATGATCTGAA 59.987 33.333 0.00 0.00 37.37 3.02
1745 2511 7.692460 ACTTTGAAGCAACATGATCTGAATA 57.308 32.000 0.00 0.00 0.00 1.75
1748 2514 7.868906 TTGAAGCAACATGATCTGAATATGA 57.131 32.000 0.00 0.00 0.00 2.15
1754 2520 9.516546 AGCAACATGATCTGAATATGACAATAT 57.483 29.630 0.00 0.00 0.00 1.28
1755 2521 9.770503 GCAACATGATCTGAATATGACAATATC 57.229 33.333 0.00 0.00 0.00 1.63
1769 2535 6.656632 TGACAATATCAGAGTATCAGACCC 57.343 41.667 0.00 0.00 37.82 4.46
1780 2546 1.929860 ATCAGACCCACCCATGGCAG 61.930 60.000 6.09 0.00 45.76 4.85
1785 2551 0.844661 ACCCACCCATGGCAGTTCTA 60.845 55.000 6.09 0.00 45.76 2.10
1797 2563 7.285401 CCCATGGCAGTTCTAGTTAAATAACAT 59.715 37.037 6.09 0.00 38.62 2.71
1801 2567 7.493320 TGGCAGTTCTAGTTAAATAACATACGG 59.507 37.037 6.13 1.39 38.62 4.02
1818 2584 3.959535 ACGGTTTCAGGTTCGGTATAA 57.040 42.857 0.00 0.00 0.00 0.98
1832 2598 4.726583 TCGGTATAAGCCAGAGTATCAGT 58.273 43.478 0.00 0.00 37.82 3.41
1839 2605 3.636679 AGCCAGAGTATCAGTAGCTCAA 58.363 45.455 0.00 0.00 37.82 3.02
1875 2641 7.584987 AGATAACATGACACAAGTAAAACAGC 58.415 34.615 0.00 0.00 0.00 4.40
1876 2642 5.835113 AACATGACACAAGTAAAACAGCT 57.165 34.783 0.00 0.00 0.00 4.24
1881 2647 7.391554 ACATGACACAAGTAAAACAGCTATCAT 59.608 33.333 0.00 0.00 0.00 2.45
1911 2680 8.830201 TTAATTTCACCACCAAATGATTTGAG 57.170 30.769 18.82 11.24 43.26 3.02
1921 2690 7.557719 CCACCAAATGATTTGAGGACTACTTAT 59.442 37.037 18.82 0.00 43.26 1.73
1926 2695 6.867519 TGATTTGAGGACTACTTATCCACA 57.132 37.500 0.00 0.00 38.86 4.17
1936 2705 9.303116 AGGACTACTTATCCACAGATAATACAG 57.697 37.037 0.00 0.00 42.66 2.74
1940 2709 6.763355 ACTTATCCACAGATAATACAGGCAG 58.237 40.000 0.00 0.00 42.66 4.85
1941 2710 3.475566 TCCACAGATAATACAGGCAGC 57.524 47.619 0.00 0.00 0.00 5.25
1948 2717 4.877823 CAGATAATACAGGCAGCAACTGAA 59.122 41.667 5.73 0.00 39.24 3.02
1949 2718 5.007430 CAGATAATACAGGCAGCAACTGAAG 59.993 44.000 5.73 0.00 39.24 3.02
1953 2722 2.222027 ACAGGCAGCAACTGAAGTAAC 58.778 47.619 5.73 0.00 39.24 2.50
1977 2746 5.987347 CCAACGAGTCCAGTAAGAACTAAAA 59.013 40.000 0.00 0.00 33.48 1.52
1980 2749 6.576185 ACGAGTCCAGTAAGAACTAAAACAA 58.424 36.000 0.00 0.00 33.48 2.83
2002 2771 9.698309 AACAATCTATGATAGTGCTACATGTAC 57.302 33.333 0.08 0.00 0.00 2.90
2022 2791 9.719279 CATGTACAAATTGCAAATGAAAACTTT 57.281 25.926 19.06 3.96 0.00 2.66
2031 2800 7.664082 TGCAAATGAAAACTTTTGTTCAAGA 57.336 28.000 0.00 0.00 42.67 3.02
2039 2808 8.966868 TGAAAACTTTTGTTCAAGAGGAAGTAT 58.033 29.630 7.74 0.00 42.67 2.12
2051 2851 8.798975 TCAAGAGGAAGTATTACCCAATCTAT 57.201 34.615 0.00 0.00 0.00 1.98
2067 2867 9.981460 ACCCAATCTATATTTTTCTTTCTGAGT 57.019 29.630 0.00 0.00 0.00 3.41
2114 2914 9.432982 AAGCCTCCAATAATATTGTTTATGGAA 57.567 29.630 11.55 0.00 0.00 3.53
2193 2993 0.108662 GCCTACAAATGTTGCCCTGC 60.109 55.000 0.00 0.00 0.00 4.85
2230 3030 8.360325 AGATATTTCGATATAACAACGCACAA 57.640 30.769 0.00 0.00 0.00 3.33
2250 4978 7.552459 GCACAATAGTAAATTTGGGTGGTAAT 58.448 34.615 0.00 0.00 0.00 1.89
2251 4979 8.688151 GCACAATAGTAAATTTGGGTGGTAATA 58.312 33.333 0.00 0.00 0.00 0.98
2289 5030 6.627274 CATGTTTTAAGAACTGCGAACAAAC 58.373 36.000 0.00 0.00 31.69 2.93
2290 5031 5.096849 TGTTTTAAGAACTGCGAACAAACC 58.903 37.500 0.00 0.00 0.00 3.27
2291 5032 5.106078 TGTTTTAAGAACTGCGAACAAACCT 60.106 36.000 0.00 0.00 0.00 3.50
2292 5033 6.093771 TGTTTTAAGAACTGCGAACAAACCTA 59.906 34.615 0.00 0.00 0.00 3.08
2293 5034 6.870971 TTTAAGAACTGCGAACAAACCTAT 57.129 33.333 0.00 0.00 0.00 2.57
2294 5035 4.749245 AAGAACTGCGAACAAACCTATG 57.251 40.909 0.00 0.00 0.00 2.23
2295 5036 3.074412 AGAACTGCGAACAAACCTATGG 58.926 45.455 0.00 0.00 0.00 2.74
2296 5037 2.851263 ACTGCGAACAAACCTATGGA 57.149 45.000 0.00 0.00 0.00 3.41
2297 5038 2.423577 ACTGCGAACAAACCTATGGAC 58.576 47.619 0.00 0.00 0.00 4.02
2300 5041 2.224670 TGCGAACAAACCTATGGACCTT 60.225 45.455 0.00 0.00 0.00 3.50
2301 5042 3.008157 TGCGAACAAACCTATGGACCTTA 59.992 43.478 0.00 0.00 0.00 2.69
2302 5043 3.373130 GCGAACAAACCTATGGACCTTAC 59.627 47.826 0.00 0.00 0.00 2.34
2303 5044 4.571919 CGAACAAACCTATGGACCTTACA 58.428 43.478 0.00 0.00 0.00 2.41
2343 5084 4.732285 AGACATGTTTGAAAGTACAGCG 57.268 40.909 0.00 0.00 0.00 5.18
2376 5117 6.183360 CGGTTACCAGACTGCAAATGAATATT 60.183 38.462 1.13 0.00 0.00 1.28
2402 5143 0.041312 CGTTGCCCAAGTGAAGAACG 60.041 55.000 0.00 0.00 0.00 3.95
2501 5242 8.997734 AGGAACTCCTGATATCAAAATTAGACT 58.002 33.333 6.90 0.00 46.55 3.24
2597 5338 1.625818 CCAGGGAGACAAGCAACTACT 59.374 52.381 0.00 0.00 0.00 2.57
2633 5374 4.548669 ACTCCAGGGAAGTAAGGATCTAC 58.451 47.826 0.00 0.00 0.00 2.59
2699 5440 6.104665 GGACTTTCACTAGCTAATACCGTTT 58.895 40.000 0.00 0.00 0.00 3.60
2726 5467 4.785575 GCCAAGGGCCCAGTTAAT 57.214 55.556 27.56 0.00 44.06 1.40
2727 5468 2.990977 GCCAAGGGCCCAGTTAATT 58.009 52.632 27.56 4.94 44.06 1.40
2728 5469 1.275666 GCCAAGGGCCCAGTTAATTT 58.724 50.000 27.56 4.03 44.06 1.82
2729 5470 1.066215 GCCAAGGGCCCAGTTAATTTG 60.066 52.381 27.56 17.43 44.06 2.32
2730 5471 2.534990 CCAAGGGCCCAGTTAATTTGA 58.465 47.619 27.56 0.00 0.00 2.69
2731 5472 2.903135 CCAAGGGCCCAGTTAATTTGAA 59.097 45.455 27.56 0.00 0.00 2.69
2732 5473 3.326297 CCAAGGGCCCAGTTAATTTGAAA 59.674 43.478 27.56 0.00 0.00 2.69
2733 5474 4.202409 CCAAGGGCCCAGTTAATTTGAAAA 60.202 41.667 27.56 0.00 0.00 2.29
2734 5475 5.514659 CCAAGGGCCCAGTTAATTTGAAAAT 60.515 40.000 27.56 0.00 0.00 1.82
2735 5476 5.164620 AGGGCCCAGTTAATTTGAAAATG 57.835 39.130 27.56 0.00 0.00 2.32
2736 5477 4.843516 AGGGCCCAGTTAATTTGAAAATGA 59.156 37.500 27.56 0.00 0.00 2.57
2737 5478 4.935205 GGGCCCAGTTAATTTGAAAATGAC 59.065 41.667 19.95 0.00 0.00 3.06
2738 5479 5.512232 GGGCCCAGTTAATTTGAAAATGACA 60.512 40.000 19.95 0.00 0.00 3.58
2739 5480 6.172630 GGCCCAGTTAATTTGAAAATGACAT 58.827 36.000 0.00 0.00 0.00 3.06
2740 5481 6.313658 GGCCCAGTTAATTTGAAAATGACATC 59.686 38.462 0.00 0.00 0.00 3.06
2741 5482 6.873076 GCCCAGTTAATTTGAAAATGACATCA 59.127 34.615 0.00 0.00 0.00 3.07
2742 5483 7.148590 GCCCAGTTAATTTGAAAATGACATCAC 60.149 37.037 0.00 0.00 0.00 3.06
2743 5484 7.871973 CCCAGTTAATTTGAAAATGACATCACA 59.128 33.333 0.00 0.00 0.00 3.58
2744 5485 8.918658 CCAGTTAATTTGAAAATGACATCACAG 58.081 33.333 0.00 0.00 0.00 3.66
2745 5486 9.467258 CAGTTAATTTGAAAATGACATCACAGT 57.533 29.630 0.00 0.00 0.00 3.55
2746 5487 9.683069 AGTTAATTTGAAAATGACATCACAGTC 57.317 29.630 0.00 0.00 38.99 3.51
2747 5488 8.629986 GTTAATTTGAAAATGACATCACAGTCG 58.370 33.333 0.00 0.00 41.41 4.18
2748 5489 3.811722 TGAAAATGACATCACAGTCGC 57.188 42.857 0.00 0.00 41.41 5.19
2749 5490 3.137533 TGAAAATGACATCACAGTCGCA 58.862 40.909 0.00 0.00 41.41 5.10
2750 5491 3.563390 TGAAAATGACATCACAGTCGCAA 59.437 39.130 0.00 0.00 41.41 4.85
2751 5492 4.036144 TGAAAATGACATCACAGTCGCAAA 59.964 37.500 0.00 0.00 41.41 3.68
2752 5493 4.566545 AAATGACATCACAGTCGCAAAA 57.433 36.364 0.00 0.00 41.41 2.44
2753 5494 4.566545 AATGACATCACAGTCGCAAAAA 57.433 36.364 0.00 0.00 41.41 1.94
2784 5526 4.691860 AAATGACATCAGAAAAGAGCGG 57.308 40.909 0.00 0.00 0.00 5.52
2787 5529 3.067106 TGACATCAGAAAAGAGCGGAAC 58.933 45.455 0.00 0.00 0.00 3.62
2791 5533 5.491982 ACATCAGAAAAGAGCGGAACTAAT 58.508 37.500 0.00 0.00 0.00 1.73
2833 5580 6.974932 ACAAAGCTACATAGATTGTGACTG 57.025 37.500 8.75 0.00 39.48 3.51
2864 5611 1.220529 CGTGCAAGGCATGTATCGAT 58.779 50.000 2.16 2.16 41.91 3.59
2914 5665 7.500892 ACACAAGTCTTGTTGTCCATTGTATAA 59.499 33.333 15.73 0.00 43.23 0.98
2920 5671 9.507280 GTCTTGTTGTCCATTGTATAATTCATG 57.493 33.333 0.00 0.00 0.00 3.07
2990 5805 9.944376 AGAAGCAATTGTAAGTAAATGAGACTA 57.056 29.630 7.40 0.00 0.00 2.59
2999 5814 9.162764 TGTAAGTAAATGAGACTATTCAAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
3054 5874 1.031571 TGAAATCGGGCCATGTCTGC 61.032 55.000 4.39 0.00 0.00 4.26
3091 5911 8.782339 TCTGGTAGACGATATCAATATTACGA 57.218 34.615 3.12 0.00 0.00 3.43
3092 5912 8.880750 TCTGGTAGACGATATCAATATTACGAG 58.119 37.037 3.12 4.99 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.450964 CGAACCAAAGACATGAATAGTAACATT 58.549 33.333 0.00 0.00 0.00 2.71
15 16 7.822334 TCGAACCAAAGACATGAATAGTAACAT 59.178 33.333 0.00 0.00 0.00 2.71
16 17 7.156000 TCGAACCAAAGACATGAATAGTAACA 58.844 34.615 0.00 0.00 0.00 2.41
17 18 7.591006 TCGAACCAAAGACATGAATAGTAAC 57.409 36.000 0.00 0.00 0.00 2.50
18 19 8.092068 TCTTCGAACCAAAGACATGAATAGTAA 58.908 33.333 0.00 0.00 0.00 2.24
19 20 7.608153 TCTTCGAACCAAAGACATGAATAGTA 58.392 34.615 0.00 0.00 0.00 1.82
20 21 6.464222 TCTTCGAACCAAAGACATGAATAGT 58.536 36.000 0.00 0.00 0.00 2.12
21 22 6.968131 TCTTCGAACCAAAGACATGAATAG 57.032 37.500 0.00 0.00 0.00 1.73
22 23 7.737972 TTTCTTCGAACCAAAGACATGAATA 57.262 32.000 0.00 0.00 32.64 1.75
23 24 6.633500 TTTCTTCGAACCAAAGACATGAAT 57.367 33.333 0.00 0.00 32.64 2.57
24 25 6.437928 CATTTCTTCGAACCAAAGACATGAA 58.562 36.000 0.00 0.00 40.74 2.57
40 41 1.834188 TTCCTTCGCCCCATTTCTTC 58.166 50.000 0.00 0.00 0.00 2.87
80 82 2.194201 TCCTTTGAAACCGGGATCAC 57.806 50.000 6.32 0.00 0.00 3.06
81 83 2.961531 TTCCTTTGAAACCGGGATCA 57.038 45.000 6.32 6.91 0.00 2.92
83 85 3.707102 TGTTTTTCCTTTGAAACCGGGAT 59.293 39.130 6.32 0.00 40.12 3.85
88 90 4.209307 TGGGTGTTTTTCCTTTGAAACC 57.791 40.909 0.00 0.00 40.12 3.27
107 110 3.807553 ACATTGCCAAAGGAAAACTTGG 58.192 40.909 0.00 0.00 39.96 3.61
108 111 4.874966 TGAACATTGCCAAAGGAAAACTTG 59.125 37.500 0.00 0.00 39.96 3.16
111 114 6.147656 CCTAATGAACATTGCCAAAGGAAAAC 59.852 38.462 9.87 0.00 32.50 2.43
115 118 4.671831 TCCTAATGAACATTGCCAAAGGA 58.328 39.130 9.87 10.07 32.50 3.36
122 125 6.095440 ACACAGGTAATCCTAATGAACATTGC 59.905 38.462 9.87 0.00 43.07 3.56
124 127 8.650143 AAACACAGGTAATCCTAATGAACATT 57.350 30.769 5.40 5.40 43.07 2.71
130 133 6.659242 ACTGGAAAACACAGGTAATCCTAATG 59.341 38.462 0.00 0.00 43.07 1.90
140 143 2.025321 ACTGGAACTGGAAAACACAGGT 60.025 45.455 0.00 0.00 38.90 4.00
154 157 3.502191 TGCTGTTTGTTTCACTGGAAC 57.498 42.857 0.00 0.00 31.35 3.62
160 163 4.683781 TGTCAACTTTGCTGTTTGTTTCAC 59.316 37.500 0.00 0.00 0.00 3.18
175 178 5.046231 GGTCTTAGAGGGATTCTGTCAACTT 60.046 44.000 0.00 0.00 36.61 2.66
192 195 2.749621 GCCAGAAACATGTGGGTCTTAG 59.250 50.000 0.00 0.00 34.06 2.18
194 197 1.145738 AGCCAGAAACATGTGGGTCTT 59.854 47.619 0.00 0.00 40.63 3.01
195 198 0.773644 AGCCAGAAACATGTGGGTCT 59.226 50.000 0.00 0.00 40.63 3.85
196 199 2.290323 ACTAGCCAGAAACATGTGGGTC 60.290 50.000 7.95 2.63 43.54 4.46
197 200 1.705186 ACTAGCCAGAAACATGTGGGT 59.295 47.619 0.00 4.40 46.31 4.51
198 201 2.496899 ACTAGCCAGAAACATGTGGG 57.503 50.000 0.00 0.01 34.06 4.61
199 202 3.197766 TCCTACTAGCCAGAAACATGTGG 59.802 47.826 0.00 0.00 36.85 4.17
201 204 4.097418 ACTCCTACTAGCCAGAAACATGT 58.903 43.478 0.00 0.00 0.00 3.21
202 205 4.744795 ACTCCTACTAGCCAGAAACATG 57.255 45.455 0.00 0.00 0.00 3.21
214 225 5.756918 ACTGCATCTGAAGTACTCCTACTA 58.243 41.667 0.00 0.00 30.45 1.82
215 226 4.605183 ACTGCATCTGAAGTACTCCTACT 58.395 43.478 0.00 0.00 30.45 2.57
216 227 4.993029 ACTGCATCTGAAGTACTCCTAC 57.007 45.455 0.00 0.00 30.45 3.18
217 228 5.717178 AGAAACTGCATCTGAAGTACTCCTA 59.283 40.000 0.00 0.00 31.17 2.94
218 229 4.530161 AGAAACTGCATCTGAAGTACTCCT 59.470 41.667 0.00 0.00 31.17 3.69
219 230 4.826556 AGAAACTGCATCTGAAGTACTCC 58.173 43.478 0.00 0.00 31.17 3.85
220 231 4.560819 CGAGAAACTGCATCTGAAGTACTC 59.439 45.833 0.00 11.97 31.17 2.59
221 232 4.489810 CGAGAAACTGCATCTGAAGTACT 58.510 43.478 0.00 0.00 31.17 2.73
222 233 3.614616 CCGAGAAACTGCATCTGAAGTAC 59.385 47.826 0.00 0.00 31.17 2.73
243 254 2.028112 TCATGCCAACAGTACAGTCTCC 60.028 50.000 0.00 0.00 0.00 3.71
259 270 2.531522 ACCAAAAAGGCTTGTCATGC 57.468 45.000 0.00 2.09 43.14 4.06
260 271 4.321230 GGACTACCAAAAAGGCTTGTCATG 60.321 45.833 0.00 0.00 43.14 3.07
262 273 3.219281 GGACTACCAAAAAGGCTTGTCA 58.781 45.455 0.00 0.00 43.14 3.58
263 274 3.219281 TGGACTACCAAAAAGGCTTGTC 58.781 45.455 0.00 1.55 43.91 3.18
278 289 2.309528 GTCCGTTCATGCATGGACTA 57.690 50.000 30.68 18.58 45.98 2.59
283 294 1.430632 GCAGGTCCGTTCATGCATG 59.569 57.895 21.07 21.07 43.28 4.06
284 295 3.909662 GCAGGTCCGTTCATGCAT 58.090 55.556 0.00 0.00 43.28 3.96
286 297 0.745845 ATCTGCAGGTCCGTTCATGC 60.746 55.000 15.13 6.74 43.93 4.06
293 304 9.737427 CTTAATTATATACTATCTGCAGGTCCG 57.263 37.037 15.13 4.13 0.00 4.79
312 323 8.932791 CAAGAAAAGCTAGACGTTCCTTAATTA 58.067 33.333 0.00 0.00 0.00 1.40
313 324 7.573283 GCAAGAAAAGCTAGACGTTCCTTAATT 60.573 37.037 0.00 0.00 0.00 1.40
315 326 5.178809 GCAAGAAAAGCTAGACGTTCCTTAA 59.821 40.000 0.00 0.00 0.00 1.85
317 328 3.498777 GCAAGAAAAGCTAGACGTTCCTT 59.501 43.478 0.00 0.00 0.00 3.36
319 330 3.067833 AGCAAGAAAAGCTAGACGTTCC 58.932 45.455 0.00 0.00 41.32 3.62
320 331 4.024809 ACAAGCAAGAAAAGCTAGACGTTC 60.025 41.667 0.00 0.00 42.53 3.95
322 333 3.467803 ACAAGCAAGAAAAGCTAGACGT 58.532 40.909 0.00 0.00 42.53 4.34
323 334 3.494626 TGACAAGCAAGAAAAGCTAGACG 59.505 43.478 0.00 0.00 42.53 4.18
324 335 5.424121 TTGACAAGCAAGAAAAGCTAGAC 57.576 39.130 0.00 0.00 42.53 2.59
357 374 2.507992 CTGCACGAGAAGCTCCGG 60.508 66.667 0.00 0.00 0.00 5.14
368 385 1.985447 ATTCCGCTGAATGCTGCACG 61.985 55.000 3.57 3.22 39.74 5.34
374 391 7.017645 CAGTACAATATAATTCCGCTGAATGC 58.982 38.462 3.96 0.00 40.34 3.56
382 399 6.223852 ACAGAGGCAGTACAATATAATTCCG 58.776 40.000 0.00 0.00 0.00 4.30
389 410 5.046304 ACACTCAACAGAGGCAGTACAATAT 60.046 40.000 0.00 0.00 33.61 1.28
391 412 3.071602 ACACTCAACAGAGGCAGTACAAT 59.928 43.478 0.00 0.00 33.61 2.71
400 421 2.487934 CTGGTCAACACTCAACAGAGG 58.512 52.381 0.00 0.00 33.61 3.69
402 423 1.209261 TGCTGGTCAACACTCAACAGA 59.791 47.619 0.00 0.00 0.00 3.41
403 424 1.331756 GTGCTGGTCAACACTCAACAG 59.668 52.381 0.00 0.00 33.92 3.16
404 425 1.339535 TGTGCTGGTCAACACTCAACA 60.340 47.619 6.15 0.00 37.68 3.33
407 428 2.158769 AGATTGTGCTGGTCAACACTCA 60.159 45.455 6.15 0.00 37.68 3.41
408 429 2.498167 AGATTGTGCTGGTCAACACTC 58.502 47.619 6.15 0.00 37.68 3.51
409 430 2.645838 AGATTGTGCTGGTCAACACT 57.354 45.000 6.15 0.00 37.68 3.55
412 433 1.394917 CGCTAGATTGTGCTGGTCAAC 59.605 52.381 0.00 0.00 0.00 3.18
413 434 1.001974 ACGCTAGATTGTGCTGGTCAA 59.998 47.619 0.00 0.00 0.00 3.18
414 435 0.608130 ACGCTAGATTGTGCTGGTCA 59.392 50.000 0.00 0.00 0.00 4.02
415 436 1.002366 CACGCTAGATTGTGCTGGTC 58.998 55.000 0.00 0.00 0.00 4.02
416 437 0.391661 CCACGCTAGATTGTGCTGGT 60.392 55.000 0.00 0.00 34.77 4.00
417 438 0.391661 ACCACGCTAGATTGTGCTGG 60.392 55.000 0.00 0.00 34.77 4.85
418 439 1.002366 GACCACGCTAGATTGTGCTG 58.998 55.000 0.00 0.00 34.77 4.41
420 441 1.002366 CAGACCACGCTAGATTGTGC 58.998 55.000 0.00 0.00 34.77 4.57
451 490 0.389817 TTGACTCGATCCACAAGCCG 60.390 55.000 0.00 0.00 0.00 5.52
452 491 1.363744 CTTGACTCGATCCACAAGCC 58.636 55.000 0.00 0.00 34.46 4.35
454 493 0.994995 CGCTTGACTCGATCCACAAG 59.005 55.000 13.02 13.02 41.46 3.16
455 494 0.389817 CCGCTTGACTCGATCCACAA 60.390 55.000 0.00 0.00 0.00 3.33
456 495 1.215382 CCGCTTGACTCGATCCACA 59.785 57.895 0.00 0.00 0.00 4.17
457 496 0.802607 GTCCGCTTGACTCGATCCAC 60.803 60.000 0.00 0.00 41.03 4.02
458 497 1.511305 GTCCGCTTGACTCGATCCA 59.489 57.895 0.00 0.00 41.03 3.41
459 498 1.227002 GGTCCGCTTGACTCGATCC 60.227 63.158 3.65 0.00 43.89 3.36
471 510 2.981977 TTTCACGTGTCCAGGTCCGC 62.982 60.000 16.51 0.00 0.00 5.54
476 515 5.447279 GCATAATAACTTTCACGTGTCCAGG 60.447 44.000 16.51 4.21 0.00 4.45
479 518 4.493545 CGGCATAATAACTTTCACGTGTCC 60.494 45.833 16.51 0.00 0.00 4.02
480 519 4.493545 CCGGCATAATAACTTTCACGTGTC 60.494 45.833 16.51 0.00 0.00 3.67
482 521 3.242608 CCCGGCATAATAACTTTCACGTG 60.243 47.826 9.94 9.94 0.00 4.49
488 527 5.304686 TCTCATCCCGGCATAATAACTTT 57.695 39.130 0.00 0.00 0.00 2.66
490 529 4.836825 CATCTCATCCCGGCATAATAACT 58.163 43.478 0.00 0.00 0.00 2.24
497 536 1.059098 TTAGCATCTCATCCCGGCAT 58.941 50.000 0.00 0.00 0.00 4.40
504 543 4.627467 ACAAGACACGTTTAGCATCTCATC 59.373 41.667 0.00 0.00 0.00 2.92
505 544 4.569943 ACAAGACACGTTTAGCATCTCAT 58.430 39.130 0.00 0.00 0.00 2.90
506 545 3.987868 GACAAGACACGTTTAGCATCTCA 59.012 43.478 0.00 0.00 0.00 3.27
507 546 3.987868 TGACAAGACACGTTTAGCATCTC 59.012 43.478 0.00 0.00 0.00 2.75
508 547 3.741344 GTGACAAGACACGTTTAGCATCT 59.259 43.478 0.00 0.00 0.00 2.90
514 553 2.610374 GCCTTGTGACAAGACACGTTTA 59.390 45.455 25.75 0.00 42.86 2.01
519 558 1.334869 CAAGGCCTTGTGACAAGACAC 59.665 52.381 33.46 14.71 40.68 3.67
520 559 1.679139 CAAGGCCTTGTGACAAGACA 58.321 50.000 33.46 0.00 35.92 3.41
536 575 0.102844 CTGCAACCACCACCAACAAG 59.897 55.000 0.00 0.00 0.00 3.16
553 592 7.881232 TCCTCATTAACTTAGGTAACCAAACTG 59.119 37.037 0.00 0.00 37.17 3.16
592 632 1.686355 TGAACTCCACGCAACCAAAT 58.314 45.000 0.00 0.00 0.00 2.32
593 633 1.336440 CATGAACTCCACGCAACCAAA 59.664 47.619 0.00 0.00 0.00 3.28
594 634 0.950836 CATGAACTCCACGCAACCAA 59.049 50.000 0.00 0.00 0.00 3.67
595 635 0.888736 CCATGAACTCCACGCAACCA 60.889 55.000 0.00 0.00 0.00 3.67
626 666 4.491676 CAATCAAAGAGCATTGACCCTTG 58.508 43.478 2.27 1.24 41.78 3.61
644 684 0.033208 TCCACATCAAGGGGCCAATC 60.033 55.000 4.39 0.00 42.23 2.67
653 693 2.287188 GCAACGGCATATCCACATCAAG 60.287 50.000 0.00 0.00 40.72 3.02
661 701 0.320771 ATCGAGGCAACGGCATATCC 60.321 55.000 0.00 0.00 43.71 2.59
665 705 0.676466 TCAAATCGAGGCAACGGCAT 60.676 50.000 0.00 0.00 43.71 4.40
673 713 2.936498 TCGGAAAAGATCAAATCGAGGC 59.064 45.455 0.00 0.00 0.00 4.70
674 714 3.000322 CGTCGGAAAAGATCAAATCGAGG 60.000 47.826 0.00 0.17 0.00 4.63
676 716 3.840468 TCGTCGGAAAAGATCAAATCGA 58.160 40.909 0.00 0.00 0.00 3.59
677 717 4.778842 ATCGTCGGAAAAGATCAAATCG 57.221 40.909 0.00 0.00 0.00 3.34
678 718 6.106877 TCAATCGTCGGAAAAGATCAAATC 57.893 37.500 0.00 0.00 0.00 2.17
679 719 6.683974 ATCAATCGTCGGAAAAGATCAAAT 57.316 33.333 0.00 0.00 0.00 2.32
680 720 6.494893 AATCAATCGTCGGAAAAGATCAAA 57.505 33.333 0.00 0.00 0.00 2.69
681 721 5.220397 CGAATCAATCGTCGGAAAAGATCAA 60.220 40.000 0.00 0.00 46.52 2.57
682 722 4.267690 CGAATCAATCGTCGGAAAAGATCA 59.732 41.667 0.00 0.00 46.52 2.92
683 723 4.752224 CGAATCAATCGTCGGAAAAGATC 58.248 43.478 0.00 0.00 46.52 2.75
684 724 4.778842 CGAATCAATCGTCGGAAAAGAT 57.221 40.909 0.00 0.00 46.52 2.40
704 746 4.227134 CCATCCCTCTCCACGGCG 62.227 72.222 4.80 4.80 0.00 6.46
729 771 1.690633 ATCCATGGGAGCACGACCT 60.691 57.895 13.02 0.00 34.05 3.85
730 772 1.524621 CATCCATGGGAGCACGACC 60.525 63.158 13.02 0.00 34.05 4.79
731 773 2.182842 GCATCCATGGGAGCACGAC 61.183 63.158 20.12 0.00 34.05 4.34
733 775 3.274586 CGCATCCATGGGAGCACG 61.275 66.667 23.17 12.69 42.66 5.34
735 777 3.641925 TTGCGCATCCATGGGAGCA 62.642 57.895 23.17 18.90 42.66 4.26
736 778 1.947597 TTTTGCGCATCCATGGGAGC 61.948 55.000 12.75 15.12 42.66 4.70
737 779 0.531657 TTTTTGCGCATCCATGGGAG 59.468 50.000 12.75 5.91 42.66 4.30
738 780 1.193323 ATTTTTGCGCATCCATGGGA 58.807 45.000 12.75 0.00 42.66 4.37
739 781 2.886862 TATTTTTGCGCATCCATGGG 57.113 45.000 12.75 0.00 42.88 4.00
740 782 3.552699 CACTTATTTTTGCGCATCCATGG 59.447 43.478 12.75 4.97 0.00 3.66
741 783 4.175516 ACACTTATTTTTGCGCATCCATG 58.824 39.130 12.75 4.71 0.00 3.66
742 784 4.423732 GACACTTATTTTTGCGCATCCAT 58.576 39.130 12.75 5.90 0.00 3.41
743 785 3.669290 CGACACTTATTTTTGCGCATCCA 60.669 43.478 12.75 0.00 0.00 3.41
746 788 2.250188 GCGACACTTATTTTTGCGCAT 58.750 42.857 12.75 0.00 37.83 4.73
747 789 1.002359 TGCGACACTTATTTTTGCGCA 60.002 42.857 5.66 5.66 42.07 6.09
748 790 1.680668 TGCGACACTTATTTTTGCGC 58.319 45.000 0.00 0.00 38.15 6.09
749 791 3.119463 CCTTTGCGACACTTATTTTTGCG 59.881 43.478 0.00 0.00 0.00 4.85
760 927 1.795286 CTCTCTGAACCTTTGCGACAC 59.205 52.381 0.00 0.00 0.00 3.67
761 928 1.686587 TCTCTCTGAACCTTTGCGACA 59.313 47.619 0.00 0.00 0.00 4.35
762 929 2.333014 CTCTCTCTGAACCTTTGCGAC 58.667 52.381 0.00 0.00 0.00 5.19
763 930 1.337260 GCTCTCTCTGAACCTTTGCGA 60.337 52.381 0.00 0.00 0.00 5.10
764 931 1.074752 GCTCTCTCTGAACCTTTGCG 58.925 55.000 0.00 0.00 0.00 4.85
765 932 2.075338 CTGCTCTCTCTGAACCTTTGC 58.925 52.381 0.00 0.00 0.00 3.68
766 933 3.399440 ACTGCTCTCTCTGAACCTTTG 57.601 47.619 0.00 0.00 0.00 2.77
769 936 1.622811 CCAACTGCTCTCTCTGAACCT 59.377 52.381 0.00 0.00 0.00 3.50
770 937 1.943507 GCCAACTGCTCTCTCTGAACC 60.944 57.143 0.00 0.00 36.87 3.62
772 939 1.051008 TGCCAACTGCTCTCTCTGAA 58.949 50.000 0.00 0.00 42.00 3.02
773 940 1.273759 ATGCCAACTGCTCTCTCTGA 58.726 50.000 0.00 0.00 42.00 3.27
774 941 2.008329 GAATGCCAACTGCTCTCTCTG 58.992 52.381 0.00 0.00 42.00 3.35
776 943 1.065564 AGGAATGCCAACTGCTCTCTC 60.066 52.381 0.00 0.00 42.00 3.20
777 944 0.990374 AGGAATGCCAACTGCTCTCT 59.010 50.000 0.00 0.00 42.00 3.10
778 945 1.742268 GAAGGAATGCCAACTGCTCTC 59.258 52.381 0.00 0.00 42.00 3.20
780 947 0.449388 CGAAGGAATGCCAACTGCTC 59.551 55.000 0.00 0.00 42.00 4.26
781 948 2.559785 CGAAGGAATGCCAACTGCT 58.440 52.632 0.00 0.00 42.00 4.24
806 1490 2.323939 TACGAAGTGCAAAAATGCCG 57.676 45.000 0.00 0.00 45.73 5.69
807 1491 4.945090 CATTTACGAAGTGCAAAAATGCC 58.055 39.130 0.00 0.00 45.73 4.40
846 1542 1.602377 GTAAATATGGCAGGACGCACC 59.398 52.381 0.00 0.00 45.17 5.01
853 1549 5.596836 ACAAACATGGTAAATATGGCAGG 57.403 39.130 0.00 0.00 0.00 4.85
854 1550 7.095910 TCAAACAAACATGGTAAATATGGCAG 58.904 34.615 0.00 0.00 0.00 4.85
855 1551 6.997655 TCAAACAAACATGGTAAATATGGCA 58.002 32.000 0.00 0.00 0.00 4.92
856 1552 7.897575 TTCAAACAAACATGGTAAATATGGC 57.102 32.000 0.00 0.00 0.00 4.40
861 1557 8.567285 TTGGTTTTCAAACAAACATGGTAAAT 57.433 26.923 0.00 0.00 40.63 1.40
862 1558 7.979444 TTGGTTTTCAAACAAACATGGTAAA 57.021 28.000 0.00 0.00 40.63 2.01
863 1559 7.979444 TTTGGTTTTCAAACAAACATGGTAA 57.021 28.000 0.00 0.00 40.14 2.85
864 1560 7.444183 TGTTTTGGTTTTCAAACAAACATGGTA 59.556 29.630 13.20 0.00 44.20 3.25
865 1561 6.263168 TGTTTTGGTTTTCAAACAAACATGGT 59.737 30.769 13.20 0.00 44.20 3.55
866 1562 6.672147 TGTTTTGGTTTTCAAACAAACATGG 58.328 32.000 13.20 0.00 44.20 3.66
867 1563 8.739649 ATTGTTTTGGTTTTCAAACAAACATG 57.260 26.923 16.00 0.00 44.20 3.21
868 1564 8.571336 TGATTGTTTTGGTTTTCAAACAAACAT 58.429 25.926 16.00 9.95 44.20 2.71
869 1565 7.930217 TGATTGTTTTGGTTTTCAAACAAACA 58.070 26.923 12.72 13.04 44.20 2.83
870 1566 8.073167 ACTGATTGTTTTGGTTTTCAAACAAAC 58.927 29.630 12.72 11.03 44.20 2.93
872 1568 7.442364 TGACTGATTGTTTTGGTTTTCAAACAA 59.558 29.630 11.46 11.46 44.20 2.83
877 1573 5.866633 GTGTGACTGATTGTTTTGGTTTTCA 59.133 36.000 0.00 0.00 0.00 2.69
879 1575 5.046663 AGGTGTGACTGATTGTTTTGGTTTT 60.047 36.000 0.00 0.00 0.00 2.43
880 1576 4.466015 AGGTGTGACTGATTGTTTTGGTTT 59.534 37.500 0.00 0.00 0.00 3.27
881 1577 4.023291 AGGTGTGACTGATTGTTTTGGTT 58.977 39.130 0.00 0.00 0.00 3.67
895 1591 0.819259 TCCTGCAAGCAAGGTGTGAC 60.819 55.000 0.00 0.00 0.00 3.67
905 1601 4.773323 AGAGTTGTTAATTCCTGCAAGC 57.227 40.909 0.00 0.00 0.00 4.01
913 1609 5.938125 TCTTGCCAGGTAGAGTTGTTAATTC 59.062 40.000 0.00 0.00 0.00 2.17
916 1612 4.347000 ACTCTTGCCAGGTAGAGTTGTTAA 59.653 41.667 16.56 0.00 46.73 2.01
951 1647 5.245531 CAAGCCTACATAACTTTCTGTCCA 58.754 41.667 0.00 0.00 0.00 4.02
952 1648 4.636206 CCAAGCCTACATAACTTTCTGTCC 59.364 45.833 0.00 0.00 0.00 4.02
957 1653 5.385509 TTTGCCAAGCCTACATAACTTTC 57.614 39.130 0.00 0.00 0.00 2.62
966 1662 1.478105 CATTCCCTTTGCCAAGCCTAC 59.522 52.381 0.00 0.00 0.00 3.18
1035 1731 7.158697 AGCTTATATATATGCGTGGTTGTTCA 58.841 34.615 19.42 0.00 38.16 3.18
1055 1751 8.807118 CACCAGGATTAAGATGATACTAGCTTA 58.193 37.037 0.00 0.00 0.00 3.09
1056 1752 7.291182 ACACCAGGATTAAGATGATACTAGCTT 59.709 37.037 0.00 0.00 0.00 3.74
1058 1754 6.998802 ACACCAGGATTAAGATGATACTAGC 58.001 40.000 0.00 0.00 0.00 3.42
1059 1755 8.091449 GGAACACCAGGATTAAGATGATACTAG 58.909 40.741 0.00 0.00 0.00 2.57
1060 1756 7.789831 AGGAACACCAGGATTAAGATGATACTA 59.210 37.037 0.00 0.00 0.00 1.82
1061 1757 6.617371 AGGAACACCAGGATTAAGATGATACT 59.383 38.462 0.00 0.00 0.00 2.12
1062 1758 6.831976 AGGAACACCAGGATTAAGATGATAC 58.168 40.000 0.00 0.00 0.00 2.24
1064 1760 5.983333 AGGAACACCAGGATTAAGATGAT 57.017 39.130 0.00 0.00 0.00 2.45
1074 1770 2.100197 CTGACGATAGGAACACCAGGA 58.900 52.381 0.00 0.00 43.77 3.86
1084 1780 4.693283 TGATTGGTTAAGCTGACGATAGG 58.307 43.478 6.19 0.00 43.77 2.57
1088 1784 2.742053 GCTTGATTGGTTAAGCTGACGA 59.258 45.455 6.19 0.00 44.41 4.20
1089 1785 3.122937 GCTTGATTGGTTAAGCTGACG 57.877 47.619 6.19 0.00 44.41 4.35
1124 1820 4.240096 CTCATGAAAATGGTCTTGCAACC 58.760 43.478 0.00 0.00 39.94 3.77
1126 1822 4.151121 TCCTCATGAAAATGGTCTTGCAA 58.849 39.130 0.00 0.00 0.00 4.08
1128 1824 4.996788 ATCCTCATGAAAATGGTCTTGC 57.003 40.909 0.00 0.00 0.00 4.01
1257 1953 4.869297 CAGAGAGTTTCAGCAGATTACCAG 59.131 45.833 0.00 0.00 0.00 4.00
1270 1966 6.985645 AGCATCATGATAAGACAGAGAGTTTC 59.014 38.462 8.15 0.00 0.00 2.78
1338 2045 0.745845 ACATGGCGGCACAATCTCTC 60.746 55.000 16.34 0.00 0.00 3.20
1339 2046 0.322816 AACATGGCGGCACAATCTCT 60.323 50.000 16.34 0.00 0.00 3.10
1358 2065 1.897133 AGGCTGATGATGCAAAGCAAA 59.103 42.857 0.00 0.00 43.62 3.68
1376 2083 7.758076 TGTATGTATTCTACGACTGTTTGAAGG 59.242 37.037 0.00 0.00 0.00 3.46
1381 2088 8.997621 ACAATGTATGTATTCTACGACTGTTT 57.002 30.769 0.00 0.00 41.63 2.83
1412 2120 5.645497 AGAAAATCAGTAACCTCAGCATGAC 59.355 40.000 0.00 0.00 42.56 3.06
1417 2125 6.560253 TTCAAGAAAATCAGTAACCTCAGC 57.440 37.500 0.00 0.00 0.00 4.26
1421 2129 8.571336 CAGTTCATTCAAGAAAATCAGTAACCT 58.429 33.333 0.00 0.00 0.00 3.50
1422 2130 8.567948 TCAGTTCATTCAAGAAAATCAGTAACC 58.432 33.333 0.00 0.00 0.00 2.85
1453 2185 5.925969 GCAGTAATTGTTGCAACCTGTAAAT 59.074 36.000 26.14 15.49 40.02 1.40
1480 2212 1.191489 TACAGTAGCAGCAGGCCACA 61.191 55.000 5.01 0.00 46.50 4.17
1498 2230 2.714250 AGGTGGAAACCTGTGGATGTTA 59.286 45.455 0.00 0.00 38.98 2.41
1547 2279 5.475719 TCCTGATACGGTTTTACAGACTTG 58.524 41.667 0.00 0.00 0.00 3.16
1554 2286 5.416947 AGACACATCCTGATACGGTTTTAC 58.583 41.667 0.00 0.00 0.00 2.01
1555 2287 5.670792 AGACACATCCTGATACGGTTTTA 57.329 39.130 0.00 0.00 0.00 1.52
1556 2288 4.553330 AGACACATCCTGATACGGTTTT 57.447 40.909 0.00 0.00 0.00 2.43
1557 2289 4.020573 TGAAGACACATCCTGATACGGTTT 60.021 41.667 0.00 0.00 0.00 3.27
1558 2290 3.513912 TGAAGACACATCCTGATACGGTT 59.486 43.478 0.00 0.00 0.00 4.44
1559 2291 3.096852 TGAAGACACATCCTGATACGGT 58.903 45.455 0.00 0.00 0.00 4.83
1560 2292 3.448686 GTGAAGACACATCCTGATACGG 58.551 50.000 0.00 0.00 45.32 4.02
1572 2304 2.508526 AGATGGGCAAAGTGAAGACAC 58.491 47.619 0.00 0.00 46.24 3.67
1573 2305 2.886523 CAAGATGGGCAAAGTGAAGACA 59.113 45.455 0.00 0.00 0.00 3.41
1574 2306 2.229784 CCAAGATGGGCAAAGTGAAGAC 59.770 50.000 0.00 0.00 32.67 3.01
1575 2307 2.517959 CCAAGATGGGCAAAGTGAAGA 58.482 47.619 0.00 0.00 32.67 2.87
1615 2347 2.669569 CCAAGACAGCACACCGGG 60.670 66.667 6.32 0.00 0.00 5.73
1630 2362 8.315482 TGTACTACTTACTACAAAATCATGCCA 58.685 33.333 0.00 0.00 0.00 4.92
1649 2381 8.754230 AAAACTTAGACTTTCCGATGTACTAC 57.246 34.615 0.00 0.00 0.00 2.73
1650 2382 8.579006 TGAAAACTTAGACTTTCCGATGTACTA 58.421 33.333 0.00 0.00 31.75 1.82
1651 2383 7.439381 TGAAAACTTAGACTTTCCGATGTACT 58.561 34.615 0.00 0.00 31.75 2.73
1652 2384 7.384387 ACTGAAAACTTAGACTTTCCGATGTAC 59.616 37.037 8.31 0.00 31.75 2.90
1659 2391 5.971792 GCACAACTGAAAACTTAGACTTTCC 59.028 40.000 8.31 0.00 31.75 3.13
1689 2455 8.337532 ACGTAACAGTGTTATTGGAAAAGTAAC 58.662 33.333 18.35 3.18 0.00 2.50
1700 2466 9.493206 CAAAGTAACAAACGTAACAGTGTTATT 57.507 29.630 18.35 10.11 38.37 1.40
1708 2474 6.179504 TGCTTCAAAGTAACAAACGTAACA 57.820 33.333 0.00 0.00 0.00 2.41
1709 2475 6.904377 GTTGCTTCAAAGTAACAAACGTAAC 58.096 36.000 15.88 0.00 46.58 2.50
1743 2509 8.976353 GGGTCTGATACTCTGATATTGTCATAT 58.024 37.037 0.00 0.00 35.97 1.78
1745 2511 6.784473 TGGGTCTGATACTCTGATATTGTCAT 59.216 38.462 0.00 0.00 35.97 3.06
1748 2514 5.305644 GGTGGGTCTGATACTCTGATATTGT 59.694 44.000 0.00 0.00 0.00 2.71
1754 2520 1.361197 TGGGTGGGTCTGATACTCTGA 59.639 52.381 0.00 0.00 0.00 3.27
1755 2521 1.866015 TGGGTGGGTCTGATACTCTG 58.134 55.000 0.00 0.00 0.00 3.35
1756 2522 2.402564 CATGGGTGGGTCTGATACTCT 58.597 52.381 0.00 0.00 0.00 3.24
1757 2523 1.417890 CCATGGGTGGGTCTGATACTC 59.582 57.143 2.85 0.00 42.11 2.59
1758 2524 1.511613 CCATGGGTGGGTCTGATACT 58.488 55.000 2.85 0.00 42.11 2.12
1759 2525 0.179018 GCCATGGGTGGGTCTGATAC 60.179 60.000 15.13 0.00 46.14 2.24
1760 2526 0.623031 TGCCATGGGTGGGTCTGATA 60.623 55.000 15.13 0.00 46.14 2.15
1761 2527 1.929860 CTGCCATGGGTGGGTCTGAT 61.930 60.000 15.13 0.00 46.14 2.90
1765 2531 1.678970 GAACTGCCATGGGTGGGTC 60.679 63.158 15.13 0.00 46.14 4.46
1769 2535 2.496899 AACTAGAACTGCCATGGGTG 57.503 50.000 15.13 0.00 0.00 4.61
1785 2551 8.625786 AACCTGAAACCGTATGTTATTTAACT 57.374 30.769 2.45 0.00 35.67 2.24
1797 2563 4.677779 GCTTATACCGAACCTGAAACCGTA 60.678 45.833 0.00 0.00 0.00 4.02
1801 2567 3.602483 TGGCTTATACCGAACCTGAAAC 58.398 45.455 0.00 0.00 0.00 2.78
1805 2571 2.431057 ACTCTGGCTTATACCGAACCTG 59.569 50.000 0.00 0.00 0.00 4.00
1818 2584 3.304911 TGAGCTACTGATACTCTGGCT 57.695 47.619 0.00 0.00 0.00 4.75
1839 2605 6.209192 TGTGTCATGTTATCTTCCATGCTTTT 59.791 34.615 0.00 0.00 38.63 2.27
1875 2641 8.450578 TGGTGGTGAAATTAAGCTAATGATAG 57.549 34.615 0.00 0.00 0.00 2.08
1876 2642 8.815565 TTGGTGGTGAAATTAAGCTAATGATA 57.184 30.769 0.00 0.00 0.00 2.15
1881 2647 7.531857 TCATTTGGTGGTGAAATTAAGCTAA 57.468 32.000 0.00 0.00 0.00 3.09
1885 2651 8.830201 TCAAATCATTTGGTGGTGAAATTAAG 57.170 30.769 10.30 0.00 40.98 1.85
1887 2653 7.234371 TCCTCAAATCATTTGGTGGTGAAATTA 59.766 33.333 10.30 0.00 40.98 1.40
1888 2654 6.043012 TCCTCAAATCATTTGGTGGTGAAATT 59.957 34.615 10.30 0.00 40.98 1.82
1889 2655 5.543405 TCCTCAAATCATTTGGTGGTGAAAT 59.457 36.000 10.30 0.00 40.98 2.17
1911 2680 8.524487 CCTGTATTATCTGTGGATAAGTAGTCC 58.476 40.741 5.03 0.00 44.49 3.85
1921 2690 2.771372 TGCTGCCTGTATTATCTGTGGA 59.229 45.455 0.00 0.00 0.00 4.02
1926 2695 4.760530 TCAGTTGCTGCCTGTATTATCT 57.239 40.909 0.00 0.00 0.00 1.98
1936 2705 1.604604 TGGTTACTTCAGTTGCTGCC 58.395 50.000 0.00 0.00 0.00 4.85
1940 2709 2.870411 ACTCGTTGGTTACTTCAGTTGC 59.130 45.455 0.00 0.00 0.00 4.17
1941 2710 3.493503 GGACTCGTTGGTTACTTCAGTTG 59.506 47.826 0.00 0.00 0.00 3.16
1948 2717 4.147321 TCTTACTGGACTCGTTGGTTACT 58.853 43.478 0.00 0.00 0.00 2.24
1949 2718 4.510038 TCTTACTGGACTCGTTGGTTAC 57.490 45.455 0.00 0.00 0.00 2.50
1953 2722 3.662247 AGTTCTTACTGGACTCGTTGG 57.338 47.619 0.00 0.00 31.99 3.77
1977 2746 8.860088 TGTACATGTAGCACTATCATAGATTGT 58.140 33.333 5.62 0.00 0.00 2.71
1987 2756 7.389803 TTGCAATTTGTACATGTAGCACTAT 57.610 32.000 13.07 5.90 0.00 2.12
1998 2767 9.552114 CAAAAGTTTTCATTTGCAATTTGTACA 57.448 25.926 0.00 0.00 33.02 2.90
2002 2771 9.125906 TGAACAAAAGTTTTCATTTGCAATTTG 57.874 25.926 0.00 7.37 40.68 2.32
2005 2774 8.728833 TCTTGAACAAAAGTTTTCATTTGCAAT 58.271 25.926 0.00 0.00 40.68 3.56
2022 2791 6.442541 TGGGTAATACTTCCTCTTGAACAA 57.557 37.500 0.00 0.00 0.00 2.83
2041 2841 9.981460 ACTCAGAAAGAAAAATATAGATTGGGT 57.019 29.630 0.00 0.00 0.00 4.51
2051 2851 7.214381 TCGGAGACAACTCAGAAAGAAAAATA 58.786 34.615 0.00 0.00 42.42 1.40
2067 2867 1.227704 TTTGGCGCTTCGGAGACAA 60.228 52.632 7.64 0.00 40.88 3.18
2072 2872 1.296056 GCTTACTTTGGCGCTTCGGA 61.296 55.000 7.64 0.00 0.00 4.55
2074 2874 1.134694 GGCTTACTTTGGCGCTTCG 59.865 57.895 7.64 0.00 0.00 3.79
2114 2914 3.718434 TCATAGTCCCAATGGCTTCTCAT 59.282 43.478 0.00 0.00 0.00 2.90
2213 3013 9.858247 AATTTACTATTGTGCGTTGTTATATCG 57.142 29.630 0.00 0.00 0.00 2.92
2221 3021 5.344665 CACCCAAATTTACTATTGTGCGTTG 59.655 40.000 0.00 0.00 0.00 4.10
2223 3023 4.082463 CCACCCAAATTTACTATTGTGCGT 60.082 41.667 0.00 0.00 0.00 5.24
2225 3025 5.400066 ACCACCCAAATTTACTATTGTGC 57.600 39.130 0.00 0.00 0.00 4.57
2250 4978 3.748645 AACATGCCAATTACCAGGGTA 57.251 42.857 0.00 0.00 0.00 3.69
2251 4979 2.621556 AACATGCCAATTACCAGGGT 57.378 45.000 0.00 0.00 0.00 4.34
2260 5001 4.022416 TCGCAGTTCTTAAAACATGCCAAT 60.022 37.500 0.00 0.00 0.00 3.16
2331 5072 1.001633 GTTCTCCCCGCTGTACTTTCA 59.998 52.381 0.00 0.00 0.00 2.69
2343 5084 0.248565 GTCTGGTAACCGTTCTCCCC 59.751 60.000 0.00 0.00 0.00 4.81
2376 5117 2.597217 CTTGGGCAACGGCAGGAA 60.597 61.111 0.00 0.00 43.71 3.36
2402 5143 2.030274 AGCAACTGGTGTATTTTTCGGC 60.030 45.455 0.00 0.00 0.00 5.54
2465 5206 1.718280 AGGAGTTCCTGTTTCGAGGT 58.282 50.000 0.00 0.00 46.55 3.85
2495 5236 7.827701 TCTCGAGAATAAAGCTTCAAGTCTAA 58.172 34.615 14.01 3.82 0.00 2.10
2554 5295 8.479313 TGGAATAAGCGAAGTAAGCATATATG 57.521 34.615 8.45 8.45 37.01 1.78
2564 5305 3.383825 GTCTCCCTGGAATAAGCGAAGTA 59.616 47.826 0.00 0.00 0.00 2.24
2576 5317 1.623811 GTAGTTGCTTGTCTCCCTGGA 59.376 52.381 0.00 0.00 0.00 3.86
2597 5338 4.170053 TCCCTGGAGTCTCTGGATTACATA 59.830 45.833 12.11 0.00 0.00 2.29
2666 5407 6.886178 AGCTAGTGAAAGTCCCCTTATTTA 57.114 37.500 0.00 0.00 0.00 1.40
2716 5457 6.873076 TGATGTCATTTTCAAATTAACTGGGC 59.127 34.615 0.00 0.00 0.00 5.36
2719 5460 9.467258 ACTGTGATGTCATTTTCAAATTAACTG 57.533 29.630 0.00 0.00 0.00 3.16
2720 5461 9.683069 GACTGTGATGTCATTTTCAAATTAACT 57.317 29.630 0.00 0.00 36.97 2.24
2721 5462 8.629986 CGACTGTGATGTCATTTTCAAATTAAC 58.370 33.333 0.00 0.00 36.82 2.01
2723 5464 6.801377 GCGACTGTGATGTCATTTTCAAATTA 59.199 34.615 0.00 0.00 36.82 1.40
2724 5465 5.630680 GCGACTGTGATGTCATTTTCAAATT 59.369 36.000 0.00 0.00 36.82 1.82
2725 5466 5.156355 GCGACTGTGATGTCATTTTCAAAT 58.844 37.500 0.00 0.00 36.82 2.32
2726 5467 4.036144 TGCGACTGTGATGTCATTTTCAAA 59.964 37.500 0.00 0.00 36.82 2.69
2727 5468 3.563390 TGCGACTGTGATGTCATTTTCAA 59.437 39.130 0.00 0.00 36.82 2.69
2728 5469 3.137533 TGCGACTGTGATGTCATTTTCA 58.862 40.909 0.00 0.00 36.82 2.69
2729 5470 3.811722 TGCGACTGTGATGTCATTTTC 57.188 42.857 0.00 0.00 36.82 2.29
2730 5471 4.566545 TTTGCGACTGTGATGTCATTTT 57.433 36.364 0.00 0.00 36.82 1.82
2731 5472 4.566545 TTTTGCGACTGTGATGTCATTT 57.433 36.364 0.00 0.00 36.82 2.32
2732 5473 4.566545 TTTTTGCGACTGTGATGTCATT 57.433 36.364 0.00 0.00 36.82 2.57
2758 5499 6.805271 CGCTCTTTTCTGATGTCATTTTCAAT 59.195 34.615 0.00 0.00 0.00 2.57
2765 5506 3.616956 TCCGCTCTTTTCTGATGTCAT 57.383 42.857 0.00 0.00 0.00 3.06
2809 5556 7.041721 CCAGTCACAATCTATGTAGCTTTGTA 58.958 38.462 0.00 0.00 41.46 2.41
2833 5580 2.413634 GCCTTGCACGTACACAATTACC 60.414 50.000 0.00 0.00 0.00 2.85
2895 5646 8.190122 GCATGAATTATACAATGGACAACAAGA 58.810 33.333 0.00 0.00 0.00 3.02
2914 5665 6.540438 AGGATCTTGTGAATTTGCATGAAT 57.460 33.333 0.00 0.00 0.00 2.57
2920 5671 8.761575 TTTCATAAAGGATCTTGTGAATTTGC 57.238 30.769 7.42 0.00 36.63 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.