Multiple sequence alignment - TraesCS7A01G370600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G370600 chr7A 100.000 3557 0 0 1 3557 543967658 543964102 0.000000e+00 6569
1 TraesCS7A01G370600 chr7A 94.875 800 25 13 2736 3533 27485582 27486367 0.000000e+00 1236
2 TraesCS7A01G370600 chr7A 97.376 343 9 0 3 345 538164175 538163833 5.120000e-163 584
3 TraesCS7A01G370600 chr7A 97.101 345 10 0 3 347 631495790 631496134 1.840000e-162 582
4 TraesCS7A01G370600 chr7B 93.801 2097 104 14 648 2732 477422653 477424735 0.000000e+00 3129
5 TraesCS7A01G370600 chr7D 94.205 1950 79 16 797 2732 453272826 453274755 0.000000e+00 2944
6 TraesCS7A01G370600 chr5A 95.149 804 26 10 2735 3533 49938492 49939287 0.000000e+00 1256
7 TraesCS7A01G370600 chr5A 93.159 804 41 12 2735 3531 676953917 676953121 0.000000e+00 1168
8 TraesCS7A01G370600 chr5A 95.787 356 13 2 3 357 374637156 374637510 1.110000e-159 573
9 TraesCS7A01G370600 chr4A 94.132 818 36 9 2723 3533 552872249 552873061 0.000000e+00 1234
10 TraesCS7A01G370600 chr1A 94.472 796 28 13 2741 3531 491895417 491894633 0.000000e+00 1212
11 TraesCS7A01G370600 chr6A 94.015 802 30 15 2735 3530 544634323 544635112 0.000000e+00 1199
12 TraesCS7A01G370600 chr6A 93.524 803 32 14 2736 3532 606447715 606446927 0.000000e+00 1177
13 TraesCS7A01G370600 chr6A 93.284 804 37 14 2736 3531 122423345 122424139 0.000000e+00 1170
14 TraesCS7A01G370600 chr6A 92.634 801 48 11 2735 3530 514030588 514031382 0.000000e+00 1142
15 TraesCS7A01G370600 chr6A 97.384 344 9 0 3 346 21206371 21206028 1.420000e-163 586
16 TraesCS7A01G370600 chr6A 97.654 341 8 0 3 343 53112062 53112402 1.420000e-163 586
17 TraesCS7A01G370600 chr6A 97.384 344 9 0 3 346 220761527 220761870 1.420000e-163 586
18 TraesCS7A01G370600 chr6A 97.093 344 10 0 3 346 22827058 22827401 6.620000e-162 580
19 TraesCS7A01G370600 chr2A 97.384 344 9 0 3 346 101087420 101087077 1.420000e-163 586
20 TraesCS7A01G370600 chr2A 97.384 344 9 0 3 346 101092463 101092120 1.420000e-163 586


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G370600 chr7A 543964102 543967658 3556 True 6569 6569 100.000 1 3557 1 chr7A.!!$R2 3556
1 TraesCS7A01G370600 chr7A 27485582 27486367 785 False 1236 1236 94.875 2736 3533 1 chr7A.!!$F1 797
2 TraesCS7A01G370600 chr7B 477422653 477424735 2082 False 3129 3129 93.801 648 2732 1 chr7B.!!$F1 2084
3 TraesCS7A01G370600 chr7D 453272826 453274755 1929 False 2944 2944 94.205 797 2732 1 chr7D.!!$F1 1935
4 TraesCS7A01G370600 chr5A 49938492 49939287 795 False 1256 1256 95.149 2735 3533 1 chr5A.!!$F1 798
5 TraesCS7A01G370600 chr5A 676953121 676953917 796 True 1168 1168 93.159 2735 3531 1 chr5A.!!$R1 796
6 TraesCS7A01G370600 chr4A 552872249 552873061 812 False 1234 1234 94.132 2723 3533 1 chr4A.!!$F1 810
7 TraesCS7A01G370600 chr1A 491894633 491895417 784 True 1212 1212 94.472 2741 3531 1 chr1A.!!$R1 790
8 TraesCS7A01G370600 chr6A 544634323 544635112 789 False 1199 1199 94.015 2735 3530 1 chr6A.!!$F6 795
9 TraesCS7A01G370600 chr6A 606446927 606447715 788 True 1177 1177 93.524 2736 3532 1 chr6A.!!$R2 796
10 TraesCS7A01G370600 chr6A 122423345 122424139 794 False 1170 1170 93.284 2736 3531 1 chr6A.!!$F3 795
11 TraesCS7A01G370600 chr6A 514030588 514031382 794 False 1142 1142 92.634 2735 3530 1 chr6A.!!$F5 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 584 0.107643 GGCAGGCTTAGGATGAGACC 59.892 60.0 0.0 0.0 0.00 3.85 F
869 870 0.246635 AAGGTTGTGGAGATCGACCG 59.753 55.0 0.0 0.0 42.44 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2157 1.069935 GTATCCCGGCTCCAGCTTC 59.930 63.158 0.00 0.0 41.70 3.86 R
2856 2883 1.670791 GTCAAAACCGGTCAACAGGA 58.329 50.000 8.04 0.0 35.12 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.479650 CTCGACGTCCACGACCTC 59.520 66.667 10.58 0.00 43.02 3.85
18 19 3.036783 CTCGACGTCCACGACCTCC 62.037 68.421 10.58 0.00 43.02 4.30
19 20 3.054503 CGACGTCCACGACCTCCT 61.055 66.667 10.58 0.00 43.02 3.69
20 21 2.876219 GACGTCCACGACCTCCTC 59.124 66.667 3.51 0.00 43.02 3.71
22 23 2.745100 CGTCCACGACCTCCTCGA 60.745 66.667 0.00 0.00 46.14 4.04
23 24 2.876219 GTCCACGACCTCCTCGAC 59.124 66.667 0.00 0.00 46.14 4.20
24 25 2.745100 TCCACGACCTCCTCGACG 60.745 66.667 0.00 0.00 46.14 5.12
25 26 2.745100 CCACGACCTCCTCGACGA 60.745 66.667 0.00 0.00 46.14 4.20
26 27 2.479650 CACGACCTCCTCGACGAC 59.520 66.667 0.00 0.00 46.14 4.34
27 28 2.031616 ACGACCTCCTCGACGACA 59.968 61.111 0.00 0.00 46.14 4.35
28 29 1.376942 ACGACCTCCTCGACGACAT 60.377 57.895 0.00 0.00 46.14 3.06
29 30 1.062685 CGACCTCCTCGACGACATG 59.937 63.158 0.00 0.00 46.14 3.21
30 31 1.433879 GACCTCCTCGACGACATGG 59.566 63.158 0.00 0.00 0.00 3.66
31 32 2.105128 CCTCCTCGACGACATGGC 59.895 66.667 0.00 0.00 0.00 4.40
32 33 2.710902 CCTCCTCGACGACATGGCA 61.711 63.158 0.00 0.00 0.00 4.92
33 34 1.226802 CTCCTCGACGACATGGCAG 60.227 63.158 0.00 0.00 0.00 4.85
34 35 2.202797 CCTCGACGACATGGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
35 36 2.887568 CTCGACGACATGGCAGGC 60.888 66.667 0.00 0.00 0.00 4.85
36 37 3.647649 CTCGACGACATGGCAGGCA 62.648 63.158 0.00 0.00 0.00 4.75
37 38 2.741985 CGACGACATGGCAGGCAA 60.742 61.111 0.00 0.00 0.00 4.52
38 39 2.743752 CGACGACATGGCAGGCAAG 61.744 63.158 0.00 0.00 0.00 4.01
39 40 2.360350 ACGACATGGCAGGCAAGG 60.360 61.111 0.00 0.00 0.00 3.61
40 41 2.046023 CGACATGGCAGGCAAGGA 60.046 61.111 0.00 0.00 0.00 3.36
41 42 2.401766 CGACATGGCAGGCAAGGAC 61.402 63.158 0.00 0.00 0.00 3.85
42 43 1.303561 GACATGGCAGGCAAGGACA 60.304 57.895 0.00 0.00 0.00 4.02
43 44 1.589716 GACATGGCAGGCAAGGACAC 61.590 60.000 0.00 0.00 0.00 3.67
44 45 2.036256 ATGGCAGGCAAGGACACC 59.964 61.111 0.00 0.00 0.00 4.16
45 46 3.925630 ATGGCAGGCAAGGACACCG 62.926 63.158 0.00 0.00 0.00 4.94
46 47 4.329545 GGCAGGCAAGGACACCGA 62.330 66.667 0.00 0.00 0.00 4.69
47 48 3.050275 GCAGGCAAGGACACCGAC 61.050 66.667 0.00 0.00 0.00 4.79
48 49 2.358737 CAGGCAAGGACACCGACC 60.359 66.667 0.00 0.00 0.00 4.79
49 50 3.637273 AGGCAAGGACACCGACCC 61.637 66.667 0.00 0.00 0.00 4.46
50 51 4.717313 GGCAAGGACACCGACCCC 62.717 72.222 0.00 0.00 0.00 4.95
51 52 3.948719 GCAAGGACACCGACCCCA 61.949 66.667 0.00 0.00 0.00 4.96
52 53 2.833227 CAAGGACACCGACCCCAA 59.167 61.111 0.00 0.00 0.00 4.12
53 54 1.302511 CAAGGACACCGACCCCAAG 60.303 63.158 0.00 0.00 0.00 3.61
54 55 1.768888 AAGGACACCGACCCCAAGT 60.769 57.895 0.00 0.00 0.00 3.16
55 56 1.765597 AAGGACACCGACCCCAAGTC 61.766 60.000 0.00 0.00 42.54 3.01
56 57 2.346365 GACACCGACCCCAAGTCC 59.654 66.667 0.00 0.00 43.08 3.85
57 58 2.446994 ACACCGACCCCAAGTCCA 60.447 61.111 0.00 0.00 43.08 4.02
58 59 2.347490 CACCGACCCCAAGTCCAG 59.653 66.667 0.00 0.00 43.08 3.86
59 60 3.637273 ACCGACCCCAAGTCCAGC 61.637 66.667 0.00 0.00 43.08 4.85
60 61 4.760047 CCGACCCCAAGTCCAGCG 62.760 72.222 0.00 0.00 43.08 5.18
62 63 4.021925 GACCCCAAGTCCAGCGCT 62.022 66.667 2.64 2.64 39.84 5.92
63 64 3.553095 GACCCCAAGTCCAGCGCTT 62.553 63.158 7.50 0.00 39.84 4.68
64 65 2.747855 CCCCAAGTCCAGCGCTTC 60.748 66.667 7.50 0.75 0.00 3.86
65 66 2.348998 CCCAAGTCCAGCGCTTCT 59.651 61.111 7.50 3.60 0.00 2.85
66 67 2.037136 CCCAAGTCCAGCGCTTCTG 61.037 63.158 7.50 0.00 42.49 3.02
67 68 2.684843 CCAAGTCCAGCGCTTCTGC 61.685 63.158 7.50 0.00 41.50 4.26
74 75 4.701290 AGCGCTTCTGCTGCTGCT 62.701 61.111 17.00 0.00 45.28 4.24
75 76 4.462417 GCGCTTCTGCTGCTGCTG 62.462 66.667 17.00 15.94 40.48 4.41
76 77 3.048475 CGCTTCTGCTGCTGCTGT 61.048 61.111 17.00 0.00 40.48 4.40
77 78 2.868920 GCTTCTGCTGCTGCTGTC 59.131 61.111 17.00 6.73 40.48 3.51
78 79 2.688794 GCTTCTGCTGCTGCTGTCC 61.689 63.158 17.00 5.76 40.48 4.02
79 80 2.033141 TTCTGCTGCTGCTGTCCC 59.967 61.111 17.00 0.00 40.48 4.46
80 81 3.889134 TTCTGCTGCTGCTGTCCCG 62.889 63.158 17.00 0.00 40.48 5.14
81 82 4.694233 CTGCTGCTGCTGTCCCGT 62.694 66.667 17.00 0.00 40.48 5.28
82 83 3.300934 CTGCTGCTGCTGTCCCGTA 62.301 63.158 17.00 0.00 40.48 4.02
83 84 2.815647 GCTGCTGCTGTCCCGTAC 60.816 66.667 8.53 0.00 36.03 3.67
84 85 2.507102 CTGCTGCTGTCCCGTACG 60.507 66.667 8.69 8.69 0.00 3.67
85 86 3.282745 CTGCTGCTGTCCCGTACGT 62.283 63.158 15.21 0.00 0.00 3.57
86 87 2.809601 GCTGCTGTCCCGTACGTG 60.810 66.667 15.21 2.17 0.00 4.49
87 88 2.649034 CTGCTGTCCCGTACGTGT 59.351 61.111 15.21 0.00 0.00 4.49
88 89 1.006571 CTGCTGTCCCGTACGTGTT 60.007 57.895 15.21 0.00 0.00 3.32
89 90 1.007038 TGCTGTCCCGTACGTGTTC 60.007 57.895 15.21 1.93 0.00 3.18
90 91 1.288127 GCTGTCCCGTACGTGTTCT 59.712 57.895 15.21 0.00 0.00 3.01
91 92 0.319297 GCTGTCCCGTACGTGTTCTT 60.319 55.000 15.21 0.00 0.00 2.52
92 93 1.415374 CTGTCCCGTACGTGTTCTTG 58.585 55.000 15.21 0.00 0.00 3.02
93 94 0.746063 TGTCCCGTACGTGTTCTTGT 59.254 50.000 15.21 0.00 0.00 3.16
94 95 1.269206 TGTCCCGTACGTGTTCTTGTC 60.269 52.381 15.21 0.00 0.00 3.18
95 96 1.000938 GTCCCGTACGTGTTCTTGTCT 60.001 52.381 15.21 0.00 0.00 3.41
96 97 1.682854 TCCCGTACGTGTTCTTGTCTT 59.317 47.619 15.21 0.00 0.00 3.01
97 98 2.101249 TCCCGTACGTGTTCTTGTCTTT 59.899 45.455 15.21 0.00 0.00 2.52
98 99 2.473984 CCCGTACGTGTTCTTGTCTTTC 59.526 50.000 15.21 0.00 0.00 2.62
99 100 2.473984 CCGTACGTGTTCTTGTCTTTCC 59.526 50.000 15.21 0.00 0.00 3.13
100 101 3.378339 CGTACGTGTTCTTGTCTTTCCT 58.622 45.455 7.22 0.00 0.00 3.36
101 102 4.539870 CGTACGTGTTCTTGTCTTTCCTA 58.460 43.478 7.22 0.00 0.00 2.94
102 103 5.159209 CGTACGTGTTCTTGTCTTTCCTAT 58.841 41.667 7.22 0.00 0.00 2.57
103 104 5.632347 CGTACGTGTTCTTGTCTTTCCTATT 59.368 40.000 7.22 0.00 0.00 1.73
104 105 6.803320 CGTACGTGTTCTTGTCTTTCCTATTA 59.197 38.462 7.22 0.00 0.00 0.98
105 106 7.326789 CGTACGTGTTCTTGTCTTTCCTATTAA 59.673 37.037 7.22 0.00 0.00 1.40
106 107 8.981647 GTACGTGTTCTTGTCTTTCCTATTAAA 58.018 33.333 0.00 0.00 0.00 1.52
107 108 8.084590 ACGTGTTCTTGTCTTTCCTATTAAAG 57.915 34.615 0.00 0.00 37.73 1.85
109 110 7.172703 CGTGTTCTTGTCTTTCCTATTAAAGGT 59.827 37.037 0.00 0.00 46.62 3.50
110 111 8.847196 GTGTTCTTGTCTTTCCTATTAAAGGTT 58.153 33.333 0.00 0.00 46.62 3.50
111 112 9.063615 TGTTCTTGTCTTTCCTATTAAAGGTTC 57.936 33.333 0.00 0.00 46.62 3.62
112 113 9.286170 GTTCTTGTCTTTCCTATTAAAGGTTCT 57.714 33.333 0.00 0.00 46.62 3.01
113 114 8.848474 TCTTGTCTTTCCTATTAAAGGTTCTG 57.152 34.615 0.00 0.00 46.62 3.02
114 115 7.390718 TCTTGTCTTTCCTATTAAAGGTTCTGC 59.609 37.037 0.00 0.00 46.62 4.26
115 116 5.944007 TGTCTTTCCTATTAAAGGTTCTGCC 59.056 40.000 0.00 0.00 46.62 4.85
116 117 5.064834 GTCTTTCCTATTAAAGGTTCTGCCG 59.935 44.000 0.00 0.00 46.62 5.69
117 118 2.914059 TCCTATTAAAGGTTCTGCCGC 58.086 47.619 4.33 0.00 46.62 6.53
118 119 2.237643 TCCTATTAAAGGTTCTGCCGCA 59.762 45.455 0.00 0.00 46.62 5.69
119 120 2.614057 CCTATTAAAGGTTCTGCCGCAG 59.386 50.000 14.62 14.62 43.70 5.18
120 121 2.200373 ATTAAAGGTTCTGCCGCAGT 57.800 45.000 19.77 2.27 43.70 4.40
121 122 1.975660 TTAAAGGTTCTGCCGCAGTT 58.024 45.000 19.77 9.08 43.70 3.16
122 123 1.519408 TAAAGGTTCTGCCGCAGTTC 58.481 50.000 19.77 13.22 43.70 3.01
123 124 1.172812 AAAGGTTCTGCCGCAGTTCC 61.173 55.000 19.77 20.30 43.70 3.62
124 125 2.032681 GGTTCTGCCGCAGTTCCT 59.967 61.111 19.77 0.00 32.61 3.36
125 126 1.600916 GGTTCTGCCGCAGTTCCTT 60.601 57.895 19.77 0.00 32.61 3.36
126 127 1.576421 GTTCTGCCGCAGTTCCTTG 59.424 57.895 19.77 0.00 32.61 3.61
127 128 1.148273 TTCTGCCGCAGTTCCTTGT 59.852 52.632 19.77 0.00 32.61 3.16
128 129 0.465460 TTCTGCCGCAGTTCCTTGTT 60.465 50.000 19.77 0.00 32.61 2.83
129 130 0.884704 TCTGCCGCAGTTCCTTGTTC 60.885 55.000 19.77 0.00 32.61 3.18
130 131 0.886490 CTGCCGCAGTTCCTTGTTCT 60.886 55.000 12.54 0.00 0.00 3.01
131 132 0.394938 TGCCGCAGTTCCTTGTTCTA 59.605 50.000 0.00 0.00 0.00 2.10
132 133 1.079503 GCCGCAGTTCCTTGTTCTAG 58.920 55.000 0.00 0.00 0.00 2.43
133 134 1.608283 GCCGCAGTTCCTTGTTCTAGT 60.608 52.381 0.00 0.00 0.00 2.57
134 135 2.338500 CCGCAGTTCCTTGTTCTAGTC 58.662 52.381 0.00 0.00 0.00 2.59
135 136 2.338500 CGCAGTTCCTTGTTCTAGTCC 58.662 52.381 0.00 0.00 0.00 3.85
136 137 2.028930 CGCAGTTCCTTGTTCTAGTCCT 60.029 50.000 0.00 0.00 0.00 3.85
137 138 3.555168 CGCAGTTCCTTGTTCTAGTCCTT 60.555 47.826 0.00 0.00 0.00 3.36
138 139 3.748568 GCAGTTCCTTGTTCTAGTCCTTG 59.251 47.826 0.00 0.00 0.00 3.61
139 140 4.743955 GCAGTTCCTTGTTCTAGTCCTTGT 60.744 45.833 0.00 0.00 0.00 3.16
140 141 4.991687 CAGTTCCTTGTTCTAGTCCTTGTC 59.008 45.833 0.00 0.00 0.00 3.18
141 142 4.040584 AGTTCCTTGTTCTAGTCCTTGTCC 59.959 45.833 0.00 0.00 0.00 4.02
142 143 3.858135 TCCTTGTTCTAGTCCTTGTCCT 58.142 45.455 0.00 0.00 0.00 3.85
143 144 5.006896 TCCTTGTTCTAGTCCTTGTCCTA 57.993 43.478 0.00 0.00 0.00 2.94
144 145 4.771054 TCCTTGTTCTAGTCCTTGTCCTAC 59.229 45.833 0.00 0.00 0.00 3.18
145 146 4.527038 CCTTGTTCTAGTCCTTGTCCTACA 59.473 45.833 0.00 0.00 0.00 2.74
146 147 5.464030 TTGTTCTAGTCCTTGTCCTACAC 57.536 43.478 0.00 0.00 0.00 2.90
147 148 4.476297 TGTTCTAGTCCTTGTCCTACACA 58.524 43.478 0.00 0.00 0.00 3.72
148 149 5.084519 TGTTCTAGTCCTTGTCCTACACAT 58.915 41.667 0.00 0.00 33.90 3.21
149 150 5.047306 TGTTCTAGTCCTTGTCCTACACATG 60.047 44.000 0.00 0.00 33.90 3.21
150 151 4.930696 TCTAGTCCTTGTCCTACACATGA 58.069 43.478 0.00 0.00 33.90 3.07
151 152 5.519808 TCTAGTCCTTGTCCTACACATGAT 58.480 41.667 0.00 0.00 33.90 2.45
152 153 6.669631 TCTAGTCCTTGTCCTACACATGATA 58.330 40.000 0.00 0.00 33.90 2.15
153 154 5.860941 AGTCCTTGTCCTACACATGATAG 57.139 43.478 0.00 0.47 33.90 2.08
154 155 4.651503 AGTCCTTGTCCTACACATGATAGG 59.348 45.833 17.03 17.03 40.67 2.57
155 156 4.406003 GTCCTTGTCCTACACATGATAGGT 59.594 45.833 20.34 8.00 40.27 3.08
156 157 5.030147 TCCTTGTCCTACACATGATAGGTT 58.970 41.667 20.34 0.00 40.27 3.50
157 158 5.128827 TCCTTGTCCTACACATGATAGGTTC 59.871 44.000 20.34 16.27 40.27 3.62
158 159 5.129485 CCTTGTCCTACACATGATAGGTTCT 59.871 44.000 20.34 0.00 40.27 3.01
159 160 6.323996 CCTTGTCCTACACATGATAGGTTCTA 59.676 42.308 20.34 13.46 40.27 2.10
160 161 6.710597 TGTCCTACACATGATAGGTTCTAC 57.289 41.667 20.34 14.35 40.27 2.59
161 162 6.432581 TGTCCTACACATGATAGGTTCTACT 58.567 40.000 20.34 0.00 40.27 2.57
162 163 6.895756 TGTCCTACACATGATAGGTTCTACTT 59.104 38.462 20.34 0.00 40.27 2.24
163 164 7.068348 TGTCCTACACATGATAGGTTCTACTTC 59.932 40.741 20.34 8.45 40.27 3.01
164 165 7.068348 GTCCTACACATGATAGGTTCTACTTCA 59.932 40.741 20.34 3.27 40.27 3.02
165 166 7.785028 TCCTACACATGATAGGTTCTACTTCAT 59.215 37.037 20.34 0.00 40.27 2.57
166 167 9.078990 CCTACACATGATAGGTTCTACTTCATA 57.921 37.037 15.63 0.00 35.40 2.15
178 179 8.368668 AGGTTCTACTTCATATATGGTACTTGC 58.631 37.037 12.78 0.00 0.00 4.01
179 180 8.368668 GGTTCTACTTCATATATGGTACTTGCT 58.631 37.037 12.78 0.00 0.00 3.91
188 189 9.755122 TCATATATGGTACTTGCTATACTGTCT 57.245 33.333 12.78 0.00 0.00 3.41
189 190 9.794685 CATATATGGTACTTGCTATACTGTCTG 57.205 37.037 4.68 0.00 0.00 3.51
190 191 4.386867 TGGTACTTGCTATACTGTCTGC 57.613 45.455 0.00 0.00 0.00 4.26
191 192 4.023980 TGGTACTTGCTATACTGTCTGCT 58.976 43.478 0.00 0.00 0.00 4.24
192 193 4.466370 TGGTACTTGCTATACTGTCTGCTT 59.534 41.667 0.00 0.00 0.00 3.91
193 194 5.046591 TGGTACTTGCTATACTGTCTGCTTT 60.047 40.000 0.00 0.00 0.00 3.51
194 195 6.153851 TGGTACTTGCTATACTGTCTGCTTTA 59.846 38.462 0.00 0.00 0.00 1.85
195 196 6.697892 GGTACTTGCTATACTGTCTGCTTTAG 59.302 42.308 0.00 0.00 0.00 1.85
196 197 6.531503 ACTTGCTATACTGTCTGCTTTAGA 57.468 37.500 0.00 0.00 0.00 2.10
197 198 7.118496 ACTTGCTATACTGTCTGCTTTAGAT 57.882 36.000 0.00 0.00 37.83 1.98
198 199 8.239038 ACTTGCTATACTGTCTGCTTTAGATA 57.761 34.615 0.00 0.00 37.83 1.98
199 200 8.865090 ACTTGCTATACTGTCTGCTTTAGATAT 58.135 33.333 0.00 0.00 37.83 1.63
200 201 9.138062 CTTGCTATACTGTCTGCTTTAGATATG 57.862 37.037 0.00 0.00 37.83 1.78
201 202 8.409358 TGCTATACTGTCTGCTTTAGATATGA 57.591 34.615 0.00 0.00 37.83 2.15
202 203 9.029368 TGCTATACTGTCTGCTTTAGATATGAT 57.971 33.333 0.00 0.00 37.83 2.45
206 207 6.696411 ACTGTCTGCTTTAGATATGATAGGC 58.304 40.000 0.00 0.00 37.83 3.93
207 208 6.496565 ACTGTCTGCTTTAGATATGATAGGCT 59.503 38.462 0.00 0.00 37.83 4.58
208 209 7.671819 ACTGTCTGCTTTAGATATGATAGGCTA 59.328 37.037 0.00 0.00 37.83 3.93
209 210 7.831753 TGTCTGCTTTAGATATGATAGGCTAC 58.168 38.462 0.00 0.00 37.83 3.58
210 211 6.970043 GTCTGCTTTAGATATGATAGGCTACG 59.030 42.308 0.00 0.00 37.83 3.51
211 212 6.095580 TCTGCTTTAGATATGATAGGCTACGG 59.904 42.308 0.00 0.00 0.00 4.02
212 213 5.715279 TGCTTTAGATATGATAGGCTACGGT 59.285 40.000 0.00 0.00 0.00 4.83
213 214 6.210784 TGCTTTAGATATGATAGGCTACGGTT 59.789 38.462 0.00 0.00 0.00 4.44
214 215 6.752815 GCTTTAGATATGATAGGCTACGGTTC 59.247 42.308 0.00 0.00 0.00 3.62
215 216 7.577046 GCTTTAGATATGATAGGCTACGGTTCA 60.577 40.741 0.00 0.00 0.00 3.18
216 217 7.956328 TTAGATATGATAGGCTACGGTTCAT 57.044 36.000 11.81 11.81 0.00 2.57
217 218 9.470399 TTTAGATATGATAGGCTACGGTTCATA 57.530 33.333 14.64 14.64 34.72 2.15
218 219 9.642343 TTAGATATGATAGGCTACGGTTCATAT 57.358 33.333 20.45 20.45 40.76 1.78
220 221 9.815306 AGATATGATAGGCTACGGTTCATATAT 57.185 33.333 20.40 16.92 39.11 0.86
221 222 9.847706 GATATGATAGGCTACGGTTCATATATG 57.152 37.037 20.40 6.36 39.11 1.78
222 223 5.902681 TGATAGGCTACGGTTCATATATGC 58.097 41.667 7.92 0.00 0.00 3.14
223 224 5.420739 TGATAGGCTACGGTTCATATATGCA 59.579 40.000 7.92 0.00 0.00 3.96
224 225 4.193826 AGGCTACGGTTCATATATGCAG 57.806 45.455 7.92 0.00 0.00 4.41
225 226 3.832490 AGGCTACGGTTCATATATGCAGA 59.168 43.478 7.92 0.00 0.00 4.26
226 227 4.283467 AGGCTACGGTTCATATATGCAGAA 59.717 41.667 7.92 0.00 0.00 3.02
227 228 4.627467 GGCTACGGTTCATATATGCAGAAG 59.373 45.833 7.92 2.39 0.00 2.85
228 229 4.092091 GCTACGGTTCATATATGCAGAAGC 59.908 45.833 7.92 6.34 42.57 3.86
229 230 4.342862 ACGGTTCATATATGCAGAAGCT 57.657 40.909 7.92 0.00 42.74 3.74
230 231 5.468540 ACGGTTCATATATGCAGAAGCTA 57.531 39.130 7.92 0.00 42.74 3.32
231 232 6.042638 ACGGTTCATATATGCAGAAGCTAT 57.957 37.500 7.92 0.00 42.74 2.97
232 233 6.467677 ACGGTTCATATATGCAGAAGCTATT 58.532 36.000 7.92 0.00 42.74 1.73
233 234 6.936900 ACGGTTCATATATGCAGAAGCTATTT 59.063 34.615 7.92 0.00 42.74 1.40
234 235 8.094548 ACGGTTCATATATGCAGAAGCTATTTA 58.905 33.333 7.92 0.00 42.74 1.40
235 236 8.383619 CGGTTCATATATGCAGAAGCTATTTAC 58.616 37.037 7.92 0.00 42.74 2.01
236 237 8.669243 GGTTCATATATGCAGAAGCTATTTACC 58.331 37.037 7.92 0.00 42.74 2.85
237 238 9.442047 GTTCATATATGCAGAAGCTATTTACCT 57.558 33.333 7.92 0.00 42.74 3.08
239 240 9.658799 TCATATATGCAGAAGCTATTTACCTTC 57.341 33.333 7.92 0.00 42.74 3.46
240 241 9.664332 CATATATGCAGAAGCTATTTACCTTCT 57.336 33.333 0.00 0.00 46.36 2.85
241 242 9.883142 ATATATGCAGAAGCTATTTACCTTCTC 57.117 33.333 0.00 0.00 44.30 2.87
242 243 5.683876 TGCAGAAGCTATTTACCTTCTCT 57.316 39.130 0.27 0.00 44.30 3.10
243 244 5.665459 TGCAGAAGCTATTTACCTTCTCTC 58.335 41.667 0.27 0.00 44.30 3.20
244 245 5.423610 TGCAGAAGCTATTTACCTTCTCTCT 59.576 40.000 0.27 0.00 44.30 3.10
245 246 5.752955 GCAGAAGCTATTTACCTTCTCTCTG 59.247 44.000 0.27 0.00 44.30 3.35
246 247 6.629291 GCAGAAGCTATTTACCTTCTCTCTGT 60.629 42.308 0.27 0.00 44.30 3.41
247 248 6.978080 CAGAAGCTATTTACCTTCTCTCTGTC 59.022 42.308 0.27 0.00 44.30 3.51
248 249 6.665680 AGAAGCTATTTACCTTCTCTCTGTCA 59.334 38.462 0.00 0.00 43.02 3.58
249 250 6.463995 AGCTATTTACCTTCTCTCTGTCAG 57.536 41.667 0.00 0.00 0.00 3.51
250 251 6.191315 AGCTATTTACCTTCTCTCTGTCAGA 58.809 40.000 1.78 1.78 0.00 3.27
251 252 6.665680 AGCTATTTACCTTCTCTCTGTCAGAA 59.334 38.462 3.67 0.00 0.00 3.02
252 253 6.754675 GCTATTTACCTTCTCTCTGTCAGAAC 59.245 42.308 3.67 0.00 0.00 3.01
253 254 4.768130 TTACCTTCTCTCTGTCAGAACG 57.232 45.455 3.67 0.00 0.00 3.95
254 255 1.271102 ACCTTCTCTCTGTCAGAACGC 59.729 52.381 3.67 0.00 0.00 4.84
255 256 1.403514 CCTTCTCTCTGTCAGAACGCC 60.404 57.143 3.67 0.00 0.00 5.68
256 257 1.543802 CTTCTCTCTGTCAGAACGCCT 59.456 52.381 3.67 0.00 0.00 5.52
257 258 0.884514 TCTCTCTGTCAGAACGCCTG 59.115 55.000 3.67 0.00 44.27 4.85
269 270 6.903883 TCAGAACGCCTGACTTATTTTATC 57.096 37.500 4.23 0.00 46.38 1.75
270 271 6.640518 TCAGAACGCCTGACTTATTTTATCT 58.359 36.000 4.23 0.00 46.38 1.98
271 272 6.757010 TCAGAACGCCTGACTTATTTTATCTC 59.243 38.462 4.23 0.00 46.38 2.75
272 273 6.758886 CAGAACGCCTGACTTATTTTATCTCT 59.241 38.462 0.00 0.00 45.78 3.10
273 274 7.921214 CAGAACGCCTGACTTATTTTATCTCTA 59.079 37.037 0.00 0.00 45.78 2.43
274 275 7.921745 AGAACGCCTGACTTATTTTATCTCTAC 59.078 37.037 0.00 0.00 0.00 2.59
275 276 7.349412 ACGCCTGACTTATTTTATCTCTACT 57.651 36.000 0.00 0.00 0.00 2.57
276 277 8.461249 ACGCCTGACTTATTTTATCTCTACTA 57.539 34.615 0.00 0.00 0.00 1.82
277 278 9.080097 ACGCCTGACTTATTTTATCTCTACTAT 57.920 33.333 0.00 0.00 0.00 2.12
343 344 8.770438 TTTGGTAAATTGCTCATATTTCCAAC 57.230 30.769 0.00 0.00 35.01 3.77
344 345 7.473735 TGGTAAATTGCTCATATTTCCAACA 57.526 32.000 0.00 0.00 0.00 3.33
345 346 7.901029 TGGTAAATTGCTCATATTTCCAACAA 58.099 30.769 0.00 0.00 0.00 2.83
346 347 8.370940 TGGTAAATTGCTCATATTTCCAACAAA 58.629 29.630 0.00 0.00 0.00 2.83
347 348 9.382275 GGTAAATTGCTCATATTTCCAACAAAT 57.618 29.630 0.00 0.00 0.00 2.32
375 376 7.956328 ACTATCTCACAAGTGTAATGTAGGA 57.044 36.000 0.00 0.00 0.00 2.94
376 377 8.540507 ACTATCTCACAAGTGTAATGTAGGAT 57.459 34.615 0.00 0.00 0.00 3.24
377 378 9.642343 ACTATCTCACAAGTGTAATGTAGGATA 57.358 33.333 0.00 0.00 0.00 2.59
378 379 9.900710 CTATCTCACAAGTGTAATGTAGGATAC 57.099 37.037 0.00 0.00 43.42 2.24
393 394 4.494091 AGGATACATGTTGAACTGGAGG 57.506 45.455 2.30 0.00 41.41 4.30
394 395 4.104086 AGGATACATGTTGAACTGGAGGA 58.896 43.478 2.30 0.00 41.41 3.71
395 396 4.163078 AGGATACATGTTGAACTGGAGGAG 59.837 45.833 2.30 0.00 41.41 3.69
396 397 4.162320 GGATACATGTTGAACTGGAGGAGA 59.838 45.833 2.30 0.00 0.00 3.71
397 398 3.692257 ACATGTTGAACTGGAGGAGAG 57.308 47.619 0.00 0.00 0.00 3.20
398 399 3.242867 ACATGTTGAACTGGAGGAGAGA 58.757 45.455 0.00 0.00 0.00 3.10
399 400 3.843027 ACATGTTGAACTGGAGGAGAGAT 59.157 43.478 0.00 0.00 0.00 2.75
400 401 5.026121 ACATGTTGAACTGGAGGAGAGATA 58.974 41.667 0.00 0.00 0.00 1.98
401 402 5.485353 ACATGTTGAACTGGAGGAGAGATAA 59.515 40.000 0.00 0.00 0.00 1.75
402 403 6.013379 ACATGTTGAACTGGAGGAGAGATAAA 60.013 38.462 0.00 0.00 0.00 1.40
403 404 5.794894 TGTTGAACTGGAGGAGAGATAAAC 58.205 41.667 0.00 0.00 0.00 2.01
404 405 5.306937 TGTTGAACTGGAGGAGAGATAAACA 59.693 40.000 0.00 0.00 0.00 2.83
405 406 6.183361 TGTTGAACTGGAGGAGAGATAAACAA 60.183 38.462 0.00 0.00 0.00 2.83
406 407 6.627087 TGAACTGGAGGAGAGATAAACAAT 57.373 37.500 0.00 0.00 0.00 2.71
407 408 7.733773 TGAACTGGAGGAGAGATAAACAATA 57.266 36.000 0.00 0.00 0.00 1.90
408 409 8.146053 TGAACTGGAGGAGAGATAAACAATAA 57.854 34.615 0.00 0.00 0.00 1.40
409 410 8.772250 TGAACTGGAGGAGAGATAAACAATAAT 58.228 33.333 0.00 0.00 0.00 1.28
438 439 7.941795 TGTTCGTCTTCTTTTAGTTAAGAGG 57.058 36.000 0.00 0.00 35.69 3.69
439 440 7.495055 TGTTCGTCTTCTTTTAGTTAAGAGGT 58.505 34.615 0.00 0.00 36.80 3.85
440 441 7.437267 TGTTCGTCTTCTTTTAGTTAAGAGGTG 59.563 37.037 0.00 0.00 36.80 4.00
441 442 6.453092 TCGTCTTCTTTTAGTTAAGAGGTGG 58.547 40.000 0.00 0.00 36.80 4.61
442 443 6.041296 TCGTCTTCTTTTAGTTAAGAGGTGGT 59.959 38.462 0.00 0.00 36.80 4.16
443 444 6.365518 CGTCTTCTTTTAGTTAAGAGGTGGTC 59.634 42.308 0.00 0.00 35.69 4.02
444 445 7.443477 GTCTTCTTTTAGTTAAGAGGTGGTCT 58.557 38.462 0.00 0.00 35.69 3.85
445 446 7.599621 GTCTTCTTTTAGTTAAGAGGTGGTCTC 59.400 40.741 0.00 0.00 42.75 3.36
459 460 7.252965 GAGGTGGTCTCTTATCAAAATAAGC 57.747 40.000 1.18 0.00 42.75 3.09
460 461 6.721318 AGGTGGTCTCTTATCAAAATAAGCA 58.279 36.000 1.18 0.00 42.75 3.91
461 462 7.349598 AGGTGGTCTCTTATCAAAATAAGCAT 58.650 34.615 1.18 0.00 42.75 3.79
462 463 7.500559 AGGTGGTCTCTTATCAAAATAAGCATC 59.499 37.037 1.18 0.00 42.75 3.91
463 464 7.283127 GGTGGTCTCTTATCAAAATAAGCATCA 59.717 37.037 1.18 0.00 42.75 3.07
464 465 8.125448 GTGGTCTCTTATCAAAATAAGCATCAC 58.875 37.037 1.18 3.66 42.75 3.06
465 466 7.011389 TGGTCTCTTATCAAAATAAGCATCACG 59.989 37.037 1.18 0.00 42.75 4.35
466 467 7.224753 GGTCTCTTATCAAAATAAGCATCACGA 59.775 37.037 0.00 0.00 42.75 4.35
467 468 8.058915 GTCTCTTATCAAAATAAGCATCACGAC 58.941 37.037 0.00 0.00 42.75 4.34
468 469 6.933130 TCTTATCAAAATAAGCATCACGACG 58.067 36.000 0.00 0.00 42.75 5.12
469 470 6.533723 TCTTATCAAAATAAGCATCACGACGT 59.466 34.615 0.00 0.00 42.75 4.34
470 471 7.703197 TCTTATCAAAATAAGCATCACGACGTA 59.297 33.333 0.00 0.00 42.75 3.57
471 472 6.844696 ATCAAAATAAGCATCACGACGTAT 57.155 33.333 0.00 0.00 0.00 3.06
472 473 6.656314 TCAAAATAAGCATCACGACGTATT 57.344 33.333 0.00 0.00 0.00 1.89
473 474 7.067532 TCAAAATAAGCATCACGACGTATTT 57.932 32.000 0.00 0.00 33.69 1.40
474 475 8.187354 TCAAAATAAGCATCACGACGTATTTA 57.813 30.769 0.00 0.00 31.94 1.40
475 476 8.325282 TCAAAATAAGCATCACGACGTATTTAG 58.675 33.333 0.00 0.00 31.94 1.85
476 477 6.764877 AATAAGCATCACGACGTATTTAGG 57.235 37.500 0.00 0.00 0.00 2.69
477 478 3.093717 AGCATCACGACGTATTTAGGG 57.906 47.619 0.00 0.00 0.00 3.53
478 479 2.691526 AGCATCACGACGTATTTAGGGA 59.308 45.455 0.00 0.00 0.00 4.20
479 480 3.321111 AGCATCACGACGTATTTAGGGAT 59.679 43.478 0.00 0.00 0.00 3.85
480 481 4.521639 AGCATCACGACGTATTTAGGGATA 59.478 41.667 0.00 0.00 0.00 2.59
481 482 5.185249 AGCATCACGACGTATTTAGGGATAT 59.815 40.000 0.00 0.00 0.00 1.63
482 483 5.867716 GCATCACGACGTATTTAGGGATATT 59.132 40.000 0.00 0.00 0.00 1.28
483 484 6.367969 GCATCACGACGTATTTAGGGATATTT 59.632 38.462 0.00 0.00 0.00 1.40
484 485 7.543172 GCATCACGACGTATTTAGGGATATTTA 59.457 37.037 0.00 0.00 0.00 1.40
485 486 9.073368 CATCACGACGTATTTAGGGATATTTAG 57.927 37.037 0.00 0.00 0.00 1.85
486 487 8.169977 TCACGACGTATTTAGGGATATTTAGT 57.830 34.615 0.00 0.00 0.00 2.24
487 488 8.632679 TCACGACGTATTTAGGGATATTTAGTT 58.367 33.333 0.00 0.00 0.00 2.24
488 489 9.897744 CACGACGTATTTAGGGATATTTAGTTA 57.102 33.333 0.00 0.00 0.00 2.24
489 490 9.899226 ACGACGTATTTAGGGATATTTAGTTAC 57.101 33.333 0.00 0.00 0.00 2.50
490 491 9.346725 CGACGTATTTAGGGATATTTAGTTACC 57.653 37.037 0.00 0.00 0.00 2.85
556 557 7.303182 TGTCTTCTCTATATTACACCCATGG 57.697 40.000 4.14 4.14 0.00 3.66
557 558 7.073208 TGTCTTCTCTATATTACACCCATGGA 58.927 38.462 15.22 0.00 0.00 3.41
558 559 7.233553 TGTCTTCTCTATATTACACCCATGGAG 59.766 40.741 15.22 8.06 0.00 3.86
559 560 7.233757 GTCTTCTCTATATTACACCCATGGAGT 59.766 40.741 15.22 14.05 31.37 3.85
560 561 8.453681 TCTTCTCTATATTACACCCATGGAGTA 58.546 37.037 15.22 12.96 31.37 2.59
561 562 8.418597 TTCTCTATATTACACCCATGGAGTAC 57.581 38.462 15.22 0.00 29.13 2.73
562 563 7.532199 TCTCTATATTACACCCATGGAGTACA 58.468 38.462 15.22 6.77 29.13 2.90
563 564 8.177456 TCTCTATATTACACCCATGGAGTACAT 58.823 37.037 15.22 12.83 41.57 2.29
571 572 2.625252 ATGGAGTACATGGCAGGCT 58.375 52.632 0.00 0.00 38.70 4.58
572 573 0.921896 ATGGAGTACATGGCAGGCTT 59.078 50.000 0.00 0.00 38.70 4.35
573 574 1.578897 TGGAGTACATGGCAGGCTTA 58.421 50.000 0.00 0.00 0.00 3.09
574 575 1.486310 TGGAGTACATGGCAGGCTTAG 59.514 52.381 0.00 0.00 0.00 2.18
575 576 1.202698 GGAGTACATGGCAGGCTTAGG 60.203 57.143 0.00 0.00 0.00 2.69
576 577 1.762957 GAGTACATGGCAGGCTTAGGA 59.237 52.381 0.00 0.00 0.00 2.94
577 578 2.370189 GAGTACATGGCAGGCTTAGGAT 59.630 50.000 0.00 0.00 0.00 3.24
578 579 2.105477 AGTACATGGCAGGCTTAGGATG 59.895 50.000 0.00 0.00 0.00 3.51
579 580 1.216064 ACATGGCAGGCTTAGGATGA 58.784 50.000 0.00 0.00 0.00 2.92
580 581 1.142465 ACATGGCAGGCTTAGGATGAG 59.858 52.381 0.00 0.00 0.00 2.90
581 582 1.419012 CATGGCAGGCTTAGGATGAGA 59.581 52.381 0.00 0.00 0.00 3.27
582 583 0.833287 TGGCAGGCTTAGGATGAGAC 59.167 55.000 0.00 0.00 0.00 3.36
583 584 0.107643 GGCAGGCTTAGGATGAGACC 59.892 60.000 0.00 0.00 0.00 3.85
584 585 0.833287 GCAGGCTTAGGATGAGACCA 59.167 55.000 0.00 0.00 0.00 4.02
585 586 1.474143 GCAGGCTTAGGATGAGACCAC 60.474 57.143 0.00 0.00 0.00 4.16
586 587 2.114616 CAGGCTTAGGATGAGACCACT 58.885 52.381 0.00 0.00 0.00 4.00
587 588 2.102252 CAGGCTTAGGATGAGACCACTC 59.898 54.545 0.00 0.00 42.88 3.51
588 589 2.023501 AGGCTTAGGATGAGACCACTCT 60.024 50.000 0.00 0.00 42.99 3.24
589 590 3.205507 AGGCTTAGGATGAGACCACTCTA 59.794 47.826 0.00 0.00 42.99 2.43
590 591 3.319689 GGCTTAGGATGAGACCACTCTAC 59.680 52.174 0.00 0.00 42.99 2.59
591 592 3.954904 GCTTAGGATGAGACCACTCTACA 59.045 47.826 0.00 0.00 42.99 2.74
592 593 4.586841 GCTTAGGATGAGACCACTCTACAT 59.413 45.833 0.00 0.00 42.99 2.29
593 594 5.508825 GCTTAGGATGAGACCACTCTACATG 60.509 48.000 0.00 0.00 42.99 3.21
594 595 2.697751 AGGATGAGACCACTCTACATGC 59.302 50.000 0.00 0.00 42.99 4.06
595 596 2.224161 GGATGAGACCACTCTACATGCC 60.224 54.545 0.00 0.00 42.99 4.40
596 597 1.195115 TGAGACCACTCTACATGCCC 58.805 55.000 0.00 0.00 42.99 5.36
597 598 1.195115 GAGACCACTCTACATGCCCA 58.805 55.000 0.00 0.00 39.78 5.36
598 599 1.137872 GAGACCACTCTACATGCCCAG 59.862 57.143 0.00 0.00 39.78 4.45
599 600 1.195115 GACCACTCTACATGCCCAGA 58.805 55.000 0.00 0.00 0.00 3.86
600 601 1.765314 GACCACTCTACATGCCCAGAT 59.235 52.381 0.00 0.00 0.00 2.90
601 602 1.487976 ACCACTCTACATGCCCAGATG 59.512 52.381 0.00 0.00 0.00 2.90
602 603 1.590932 CACTCTACATGCCCAGATGC 58.409 55.000 0.00 0.00 0.00 3.91
603 604 0.471617 ACTCTACATGCCCAGATGCC 59.528 55.000 0.00 0.00 0.00 4.40
604 605 0.250640 CTCTACATGCCCAGATGCCC 60.251 60.000 0.00 0.00 0.00 5.36
605 606 0.695462 TCTACATGCCCAGATGCCCT 60.695 55.000 0.00 0.00 0.00 5.19
606 607 1.059098 CTACATGCCCAGATGCCCTA 58.941 55.000 0.00 0.00 0.00 3.53
607 608 1.421268 CTACATGCCCAGATGCCCTAA 59.579 52.381 0.00 0.00 0.00 2.69
608 609 0.855598 ACATGCCCAGATGCCCTAAT 59.144 50.000 0.00 0.00 0.00 1.73
609 610 1.202976 ACATGCCCAGATGCCCTAATC 60.203 52.381 0.00 0.00 0.00 1.75
610 611 1.075050 CATGCCCAGATGCCCTAATCT 59.925 52.381 0.00 0.00 37.39 2.40
619 620 5.033589 AGATGCCCTAATCTGAAGACTTG 57.966 43.478 0.00 0.00 35.54 3.16
620 621 4.472833 AGATGCCCTAATCTGAAGACTTGT 59.527 41.667 0.00 0.00 35.54 3.16
621 622 4.207891 TGCCCTAATCTGAAGACTTGTC 57.792 45.455 0.00 0.00 0.00 3.18
622 623 3.582647 TGCCCTAATCTGAAGACTTGTCA 59.417 43.478 3.49 0.00 0.00 3.58
623 624 4.225942 TGCCCTAATCTGAAGACTTGTCAT 59.774 41.667 3.49 0.00 0.00 3.06
624 625 4.813697 GCCCTAATCTGAAGACTTGTCATC 59.186 45.833 3.49 1.51 0.00 2.92
625 626 5.396213 GCCCTAATCTGAAGACTTGTCATCT 60.396 44.000 7.38 0.00 0.00 2.90
626 627 6.648192 CCCTAATCTGAAGACTTGTCATCTT 58.352 40.000 7.38 0.00 39.15 2.40
636 637 8.729805 GAAGACTTGTCATCTTCTCCATTAAT 57.270 34.615 8.39 0.00 45.77 1.40
637 638 9.171877 GAAGACTTGTCATCTTCTCCATTAATT 57.828 33.333 8.39 0.00 45.77 1.40
638 639 8.729805 AGACTTGTCATCTTCTCCATTAATTC 57.270 34.615 3.49 0.00 0.00 2.17
639 640 8.547173 AGACTTGTCATCTTCTCCATTAATTCT 58.453 33.333 3.49 0.00 0.00 2.40
640 641 9.823647 GACTTGTCATCTTCTCCATTAATTCTA 57.176 33.333 0.00 0.00 0.00 2.10
641 642 9.606631 ACTTGTCATCTTCTCCATTAATTCTAC 57.393 33.333 0.00 0.00 0.00 2.59
642 643 8.964476 TTGTCATCTTCTCCATTAATTCTACC 57.036 34.615 0.00 0.00 0.00 3.18
643 644 8.324191 TGTCATCTTCTCCATTAATTCTACCT 57.676 34.615 0.00 0.00 0.00 3.08
644 645 8.772250 TGTCATCTTCTCCATTAATTCTACCTT 58.228 33.333 0.00 0.00 0.00 3.50
645 646 9.620259 GTCATCTTCTCCATTAATTCTACCTTT 57.380 33.333 0.00 0.00 0.00 3.11
646 647 9.618890 TCATCTTCTCCATTAATTCTACCTTTG 57.381 33.333 0.00 0.00 0.00 2.77
647 648 9.618890 CATCTTCTCCATTAATTCTACCTTTGA 57.381 33.333 0.00 0.00 0.00 2.69
684 685 3.325135 CCTAATCTCGTAAGCCCATTCCT 59.675 47.826 0.00 0.00 37.18 3.36
685 686 3.933861 AATCTCGTAAGCCCATTCCTT 57.066 42.857 0.00 0.00 37.18 3.36
701 702 5.462398 CCATTCCTTAAGAAATCGTCCGTAG 59.538 44.000 3.36 0.00 38.21 3.51
708 709 3.857052 AGAAATCGTCCGTAGCATTTCA 58.143 40.909 11.60 0.00 32.31 2.69
735 736 6.878923 TCAAAATAATGAGACACGAACCATCT 59.121 34.615 0.00 0.00 0.00 2.90
744 745 2.370849 ACACGAACCATCTAACCCAACT 59.629 45.455 0.00 0.00 0.00 3.16
748 749 5.064707 CACGAACCATCTAACCCAACTAATG 59.935 44.000 0.00 0.00 0.00 1.90
838 839 2.293399 ACATGCAACTTCCGACCTTTTC 59.707 45.455 0.00 0.00 0.00 2.29
839 840 2.341846 TGCAACTTCCGACCTTTTCT 57.658 45.000 0.00 0.00 0.00 2.52
841 842 2.357637 TGCAACTTCCGACCTTTTCTTG 59.642 45.455 0.00 0.00 0.00 3.02
842 843 2.616842 GCAACTTCCGACCTTTTCTTGA 59.383 45.455 0.00 0.00 0.00 3.02
843 844 3.066203 GCAACTTCCGACCTTTTCTTGAA 59.934 43.478 0.00 0.00 0.00 2.69
844 845 4.439563 GCAACTTCCGACCTTTTCTTGAAA 60.440 41.667 0.00 0.00 0.00 2.69
845 846 5.646606 CAACTTCCGACCTTTTCTTGAAAA 58.353 37.500 8.07 8.07 0.00 2.29
846 847 5.907866 ACTTCCGACCTTTTCTTGAAAAA 57.092 34.783 9.41 0.00 0.00 1.94
868 869 2.474410 AAAGGTTGTGGAGATCGACC 57.526 50.000 0.00 5.27 39.08 4.79
869 870 0.246635 AAGGTTGTGGAGATCGACCG 59.753 55.000 0.00 0.00 42.44 4.79
870 871 1.810030 GGTTGTGGAGATCGACCGC 60.810 63.158 15.27 15.27 38.27 5.68
871 872 1.810030 GTTGTGGAGATCGACCGCC 60.810 63.158 18.00 0.00 37.14 6.13
872 873 3.014085 TTGTGGAGATCGACCGCCC 62.014 63.158 18.00 0.00 37.14 6.13
892 893 0.804989 GATCGAGGTGGCAAAACAGG 59.195 55.000 0.00 0.00 0.00 4.00
895 896 1.795170 CGAGGTGGCAAAACAGGGTG 61.795 60.000 0.00 0.00 0.00 4.61
901 902 1.334384 GGCAAAACAGGGTGGTTGGT 61.334 55.000 0.00 0.00 0.00 3.67
904 922 2.107366 CAAAACAGGGTGGTTGGTTCT 58.893 47.619 0.00 0.00 0.00 3.01
945 968 1.885388 CGGTGTCACTCCACGCAAA 60.885 57.895 2.35 0.00 36.16 3.68
947 970 1.092921 GGTGTCACTCCACGCAAACA 61.093 55.000 2.35 0.00 36.16 2.83
959 982 1.060937 GCAAACATAGCCGCTGACG 59.939 57.895 2.16 0.00 39.67 4.35
960 983 1.358725 GCAAACATAGCCGCTGACGA 61.359 55.000 2.16 0.00 43.93 4.20
964 987 1.655654 CATAGCCGCTGACGACGAG 60.656 63.158 0.00 0.00 43.93 4.18
970 993 1.500844 CGCTGACGACGAGTTAGGT 59.499 57.895 0.00 0.00 43.93 3.08
977 1000 2.485814 GACGACGAGTTAGGTAACCACT 59.514 50.000 0.00 0.00 36.88 4.00
995 1018 3.119316 CCACTTAACTGGCACAACACAAA 60.119 43.478 0.00 0.00 38.70 2.83
996 1019 3.857093 CACTTAACTGGCACAACACAAAC 59.143 43.478 0.00 0.00 38.70 2.93
997 1020 3.761752 ACTTAACTGGCACAACACAAACT 59.238 39.130 0.00 0.00 38.70 2.66
1035 1058 3.607370 GACCAAGGTGTCCGAGGGC 62.607 68.421 0.00 0.00 0.00 5.19
1242 1265 2.509336 GACGCGCTGGTGCACTAT 60.509 61.111 17.98 0.00 39.64 2.12
1280 1303 1.330655 ATCGTGGAAGGCGAGGACAT 61.331 55.000 0.00 0.00 41.83 3.06
1476 1500 7.099266 TGCCATGATACAGGTTCTTATTTTG 57.901 36.000 0.00 0.00 0.00 2.44
1491 1515 6.644775 TCTTATTTTGTTTTTCGTGCATTGC 58.355 32.000 0.46 0.46 0.00 3.56
1546 1570 4.582869 GGTTGGTCCCGACTAAGTAAATT 58.417 43.478 3.76 0.00 32.39 1.82
1547 1571 5.005740 GGTTGGTCCCGACTAAGTAAATTT 58.994 41.667 3.76 0.00 32.39 1.82
1565 1589 6.723131 AAATTTACTACGCCAACTCTCTTC 57.277 37.500 0.00 0.00 0.00 2.87
1590 1614 1.102978 AGCAAAACCAAACTCGTGCT 58.897 45.000 0.00 0.00 37.50 4.40
1606 1630 7.197071 ACTCGTGCTCATTTTTAATGTTGTA 57.803 32.000 0.00 0.00 0.00 2.41
1628 1652 5.424121 AAACTTGTGATGAGTAGTTGCAC 57.576 39.130 0.00 0.00 31.64 4.57
1633 1657 5.208463 TGTGATGAGTAGTTGCACACTTA 57.792 39.130 6.82 0.00 36.88 2.24
1648 1672 8.450964 GTTGCACACTTACATTTATCATACTGT 58.549 33.333 0.00 0.00 0.00 3.55
1649 1673 9.660180 TTGCACACTTACATTTATCATACTGTA 57.340 29.630 0.00 0.00 0.00 2.74
1956 1980 2.568090 GCGTTCGACTTCCCGGTA 59.432 61.111 0.00 0.00 0.00 4.02
1963 1987 1.033746 CGACTTCCCGGTAGCCTACA 61.034 60.000 3.95 0.00 0.00 2.74
2364 2388 0.888619 TGTCGGACTGGAGTAAGCTG 59.111 55.000 9.88 0.00 0.00 4.24
2563 2587 1.138047 GGACCTCGCATGAACGTACG 61.138 60.000 15.01 15.01 0.00 3.67
2564 2588 0.455633 GACCTCGCATGAACGTACGT 60.456 55.000 16.72 16.72 0.00 3.57
2565 2589 0.804364 ACCTCGCATGAACGTACGTA 59.196 50.000 23.12 7.43 0.00 3.57
2566 2590 1.186030 CCTCGCATGAACGTACGTAC 58.814 55.000 23.12 15.90 0.00 3.67
2610 2634 2.727916 GCGTGCGAAATAAACTGAAGGG 60.728 50.000 0.00 0.00 0.00 3.95
2620 2644 0.253327 AACTGAAGGGAATCGAGGGC 59.747 55.000 0.00 0.00 0.00 5.19
2640 2664 8.380644 CGAGGGCACTTAATTATTATATGTTCG 58.619 37.037 0.00 0.00 0.00 3.95
2732 2757 8.863049 CCATATAGTTTGCTGAATGTTTTGTTC 58.137 33.333 0.00 0.00 0.00 3.18
2757 2783 4.716784 TGAGAGAAGTGCATATTACACCCT 59.283 41.667 0.00 1.44 38.87 4.34
2762 2788 6.426587 AGAAGTGCATATTACACCCTTCAAT 58.573 36.000 9.66 0.00 38.87 2.57
2827 2854 6.473758 GTCTAAAATACACCCCTCAACTCTT 58.526 40.000 0.00 0.00 0.00 2.85
2856 2883 2.242452 GCTAGAATTCAACCCTCCCCTT 59.758 50.000 8.44 0.00 0.00 3.95
2886 2913 2.021457 CGGTTTTGACCCAGTTTGACT 58.979 47.619 0.00 0.00 0.00 3.41
2906 2933 4.331968 ACTGGTTTTGACTGAGTGAACAA 58.668 39.130 0.00 0.00 0.00 2.83
2978 3024 4.486125 AAGTTCCAAGTTTTTGCACCAT 57.514 36.364 0.00 0.00 32.79 3.55
3098 3147 3.684305 CAGCATGGTGAACAGTAATTCGA 59.316 43.478 20.20 0.00 0.00 3.71
3100 3149 3.063997 GCATGGTGAACAGTAATTCGAGG 59.936 47.826 0.00 0.00 0.00 4.63
3258 3313 2.030540 CAGGTGTCCAAACATGCTGAAG 60.031 50.000 0.00 0.00 37.81 3.02
3430 3494 2.783510 GGAGGGGAGGGTTGAATTATGA 59.216 50.000 0.00 0.00 0.00 2.15
3533 3600 6.037610 GGGTGTAATATGCACTTCTCTCTTTG 59.962 42.308 9.60 0.00 37.07 2.77
3534 3601 6.595716 GGTGTAATATGCACTTCTCTCTTTGT 59.404 38.462 9.60 0.00 37.07 2.83
3535 3602 7.119846 GGTGTAATATGCACTTCTCTCTTTGTT 59.880 37.037 9.60 0.00 37.07 2.83
3536 3603 8.507249 GTGTAATATGCACTTCTCTCTTTGTTT 58.493 33.333 0.00 0.00 34.30 2.83
3537 3604 8.506437 TGTAATATGCACTTCTCTCTTTGTTTG 58.494 33.333 0.00 0.00 0.00 2.93
3538 3605 7.516198 AATATGCACTTCTCTCTTTGTTTGT 57.484 32.000 0.00 0.00 0.00 2.83
3539 3606 8.621532 AATATGCACTTCTCTCTTTGTTTGTA 57.378 30.769 0.00 0.00 0.00 2.41
3540 3607 5.734855 TGCACTTCTCTCTTTGTTTGTAC 57.265 39.130 0.00 0.00 0.00 2.90
3541 3608 5.182487 TGCACTTCTCTCTTTGTTTGTACA 58.818 37.500 0.00 0.00 0.00 2.90
3542 3609 5.064707 TGCACTTCTCTCTTTGTTTGTACAC 59.935 40.000 0.00 0.00 32.98 2.90
3543 3610 5.294552 GCACTTCTCTCTTTGTTTGTACACT 59.705 40.000 0.00 0.00 32.98 3.55
3544 3611 6.183360 GCACTTCTCTCTTTGTTTGTACACTT 60.183 38.462 0.00 0.00 32.98 3.16
3545 3612 7.011109 GCACTTCTCTCTTTGTTTGTACACTTA 59.989 37.037 0.00 0.00 32.98 2.24
3546 3613 9.046296 CACTTCTCTCTTTGTTTGTACACTTAT 57.954 33.333 0.00 0.00 32.98 1.73
3547 3614 9.262358 ACTTCTCTCTTTGTTTGTACACTTATC 57.738 33.333 0.00 0.00 32.98 1.75
3548 3615 9.261180 CTTCTCTCTTTGTTTGTACACTTATCA 57.739 33.333 0.00 0.00 32.98 2.15
3549 3616 9.778741 TTCTCTCTTTGTTTGTACACTTATCAT 57.221 29.630 0.00 0.00 32.98 2.45
3550 3617 9.778741 TCTCTCTTTGTTTGTACACTTATCATT 57.221 29.630 0.00 0.00 32.98 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.479650 GAGGTCGTGGACGTCGAG 59.520 66.667 9.92 3.30 37.62 4.04
1 2 3.052082 GGAGGTCGTGGACGTCGA 61.052 66.667 9.92 1.86 44.99 4.20
2 3 3.036783 GAGGAGGTCGTGGACGTCG 62.037 68.421 9.92 0.00 44.99 5.12
3 4 2.876219 GAGGAGGTCGTGGACGTC 59.124 66.667 7.13 7.13 43.84 4.34
4 5 3.054503 CGAGGAGGTCGTGGACGT 61.055 66.667 0.00 0.00 44.20 4.34
12 13 1.433879 CCATGTCGTCGAGGAGGTC 59.566 63.158 8.30 0.00 0.00 3.85
13 14 2.711922 GCCATGTCGTCGAGGAGGT 61.712 63.158 8.30 0.00 0.00 3.85
14 15 2.105128 GCCATGTCGTCGAGGAGG 59.895 66.667 8.30 7.75 0.00 4.30
15 16 1.226802 CTGCCATGTCGTCGAGGAG 60.227 63.158 8.30 0.00 0.00 3.69
16 17 2.710902 CCTGCCATGTCGTCGAGGA 61.711 63.158 3.17 3.17 0.00 3.71
17 18 2.202797 CCTGCCATGTCGTCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
18 19 2.887568 GCCTGCCATGTCGTCGAG 60.888 66.667 0.00 0.00 0.00 4.04
19 20 3.233259 TTGCCTGCCATGTCGTCGA 62.233 57.895 0.00 0.00 0.00 4.20
20 21 2.741985 TTGCCTGCCATGTCGTCG 60.742 61.111 0.00 0.00 0.00 5.12
21 22 2.401766 CCTTGCCTGCCATGTCGTC 61.402 63.158 0.00 0.00 0.00 4.20
22 23 2.360350 CCTTGCCTGCCATGTCGT 60.360 61.111 0.00 0.00 0.00 4.34
23 24 2.046023 TCCTTGCCTGCCATGTCG 60.046 61.111 0.00 0.00 0.00 4.35
24 25 1.303561 TGTCCTTGCCTGCCATGTC 60.304 57.895 0.00 0.00 0.00 3.06
25 26 1.604593 GTGTCCTTGCCTGCCATGT 60.605 57.895 0.00 0.00 0.00 3.21
26 27 2.345760 GGTGTCCTTGCCTGCCATG 61.346 63.158 0.00 0.00 0.00 3.66
27 28 2.036256 GGTGTCCTTGCCTGCCAT 59.964 61.111 0.00 0.00 0.00 4.40
28 29 4.641645 CGGTGTCCTTGCCTGCCA 62.642 66.667 0.00 0.00 0.00 4.92
29 30 4.329545 TCGGTGTCCTTGCCTGCC 62.330 66.667 0.00 0.00 0.00 4.85
30 31 3.050275 GTCGGTGTCCTTGCCTGC 61.050 66.667 0.00 0.00 0.00 4.85
31 32 2.358737 GGTCGGTGTCCTTGCCTG 60.359 66.667 0.00 0.00 0.00 4.85
32 33 3.637273 GGGTCGGTGTCCTTGCCT 61.637 66.667 0.00 0.00 0.00 4.75
33 34 4.717313 GGGGTCGGTGTCCTTGCC 62.717 72.222 0.00 0.00 0.00 4.52
34 35 3.485346 TTGGGGTCGGTGTCCTTGC 62.485 63.158 0.00 0.00 0.00 4.01
35 36 1.302511 CTTGGGGTCGGTGTCCTTG 60.303 63.158 0.00 0.00 0.00 3.61
36 37 1.765597 GACTTGGGGTCGGTGTCCTT 61.766 60.000 0.00 0.00 35.07 3.36
37 38 2.122547 ACTTGGGGTCGGTGTCCT 60.123 61.111 0.00 0.00 0.00 3.85
38 39 2.346365 GACTTGGGGTCGGTGTCC 59.654 66.667 0.00 0.00 35.07 4.02
39 40 2.346365 GGACTTGGGGTCGGTGTC 59.654 66.667 0.00 0.00 45.35 3.67
40 41 2.446994 TGGACTTGGGGTCGGTGT 60.447 61.111 0.00 0.00 45.35 4.16
41 42 2.347490 CTGGACTTGGGGTCGGTG 59.653 66.667 0.00 0.00 45.35 4.94
42 43 3.637273 GCTGGACTTGGGGTCGGT 61.637 66.667 0.00 0.00 45.35 4.69
43 44 4.760047 CGCTGGACTTGGGGTCGG 62.760 72.222 0.00 0.00 45.35 4.79
45 46 3.553095 AAGCGCTGGACTTGGGGTC 62.553 63.158 12.58 0.00 43.79 4.46
46 47 3.553095 GAAGCGCTGGACTTGGGGT 62.553 63.158 12.58 0.00 0.00 4.95
47 48 2.747855 GAAGCGCTGGACTTGGGG 60.748 66.667 12.58 0.00 0.00 4.96
48 49 2.037136 CAGAAGCGCTGGACTTGGG 61.037 63.158 12.58 0.00 41.07 4.12
49 50 2.684843 GCAGAAGCGCTGGACTTGG 61.685 63.158 12.58 1.74 45.03 3.61
50 51 2.866028 GCAGAAGCGCTGGACTTG 59.134 61.111 12.58 6.60 45.03 3.16
60 61 2.688794 GGACAGCAGCAGCAGAAGC 61.689 63.158 3.17 0.00 45.49 3.86
61 62 2.039405 GGGACAGCAGCAGCAGAAG 61.039 63.158 3.17 0.00 45.49 2.85
62 63 2.033141 GGGACAGCAGCAGCAGAA 59.967 61.111 3.17 0.00 45.49 3.02
63 64 4.383861 CGGGACAGCAGCAGCAGA 62.384 66.667 3.17 0.00 45.49 4.26
64 65 3.300934 TACGGGACAGCAGCAGCAG 62.301 63.158 3.17 0.00 45.49 4.24
65 66 3.310307 TACGGGACAGCAGCAGCA 61.310 61.111 3.17 0.00 45.49 4.41
66 67 2.815647 GTACGGGACAGCAGCAGC 60.816 66.667 0.00 0.00 42.56 5.25
67 68 2.507102 CGTACGGGACAGCAGCAG 60.507 66.667 7.57 0.00 0.00 4.24
68 69 3.299977 ACGTACGGGACAGCAGCA 61.300 61.111 21.06 0.00 0.00 4.41
69 70 2.809601 CACGTACGGGACAGCAGC 60.810 66.667 21.06 0.00 0.00 5.25
70 71 1.006571 AACACGTACGGGACAGCAG 60.007 57.895 27.01 3.29 0.00 4.24
71 72 1.007038 GAACACGTACGGGACAGCA 60.007 57.895 27.01 0.00 0.00 4.41
72 73 0.319297 AAGAACACGTACGGGACAGC 60.319 55.000 27.01 9.90 0.00 4.40
73 74 1.269413 ACAAGAACACGTACGGGACAG 60.269 52.381 27.01 15.33 0.00 3.51
74 75 0.746063 ACAAGAACACGTACGGGACA 59.254 50.000 27.01 0.00 0.00 4.02
75 76 1.000938 AGACAAGAACACGTACGGGAC 60.001 52.381 27.01 17.17 0.00 4.46
76 77 1.321474 AGACAAGAACACGTACGGGA 58.679 50.000 27.01 0.00 0.00 5.14
77 78 2.144482 AAGACAAGAACACGTACGGG 57.856 50.000 17.69 17.69 0.00 5.28
78 79 2.473984 GGAAAGACAAGAACACGTACGG 59.526 50.000 21.06 11.05 0.00 4.02
79 80 3.378339 AGGAAAGACAAGAACACGTACG 58.622 45.455 15.01 15.01 0.00 3.67
80 81 8.524870 TTAATAGGAAAGACAAGAACACGTAC 57.475 34.615 0.00 0.00 0.00 3.67
81 82 9.199982 CTTTAATAGGAAAGACAAGAACACGTA 57.800 33.333 0.00 0.00 38.48 3.57
82 83 8.084590 CTTTAATAGGAAAGACAAGAACACGT 57.915 34.615 0.00 0.00 38.48 4.49
94 95 8.323278 CTGCGGCAGAACCTTTAATAGGAAAG 62.323 46.154 25.33 0.00 38.98 2.62
95 96 6.603014 CTGCGGCAGAACCTTTAATAGGAAA 61.603 44.000 25.33 0.00 38.98 3.13
96 97 5.161249 CTGCGGCAGAACCTTTAATAGGAA 61.161 45.833 25.33 0.00 38.98 3.36
97 98 3.681594 CTGCGGCAGAACCTTTAATAGGA 60.682 47.826 25.33 0.00 38.98 2.94
98 99 2.614057 CTGCGGCAGAACCTTTAATAGG 59.386 50.000 25.33 0.00 41.05 2.57
99 100 3.270877 ACTGCGGCAGAACCTTTAATAG 58.729 45.455 34.70 6.24 35.18 1.73
100 101 3.343941 ACTGCGGCAGAACCTTTAATA 57.656 42.857 34.70 0.00 35.18 0.98
101 102 2.200373 ACTGCGGCAGAACCTTTAAT 57.800 45.000 34.70 7.57 35.18 1.40
102 103 1.877443 GAACTGCGGCAGAACCTTTAA 59.123 47.619 34.70 0.00 35.18 1.52
103 104 1.519408 GAACTGCGGCAGAACCTTTA 58.481 50.000 34.70 0.00 35.18 1.85
104 105 1.172812 GGAACTGCGGCAGAACCTTT 61.173 55.000 34.70 18.70 35.18 3.11
105 106 1.600916 GGAACTGCGGCAGAACCTT 60.601 57.895 34.70 19.08 35.18 3.50
106 107 2.032681 GGAACTGCGGCAGAACCT 59.967 61.111 34.70 16.21 35.18 3.50
107 108 1.600916 AAGGAACTGCGGCAGAACC 60.601 57.895 34.70 30.74 40.86 3.62
108 109 1.166531 ACAAGGAACTGCGGCAGAAC 61.167 55.000 34.70 24.71 40.86 3.01
109 110 0.465460 AACAAGGAACTGCGGCAGAA 60.465 50.000 34.70 0.00 40.86 3.02
110 111 0.884704 GAACAAGGAACTGCGGCAGA 60.885 55.000 34.70 0.00 40.86 4.26
111 112 0.886490 AGAACAAGGAACTGCGGCAG 60.886 55.000 27.43 27.43 40.86 4.85
112 113 0.394938 TAGAACAAGGAACTGCGGCA 59.605 50.000 1.29 1.29 40.86 5.69
113 114 1.079503 CTAGAACAAGGAACTGCGGC 58.920 55.000 0.00 0.00 40.86 6.53
114 115 2.338500 GACTAGAACAAGGAACTGCGG 58.662 52.381 0.00 0.00 40.86 5.69
115 116 2.028930 AGGACTAGAACAAGGAACTGCG 60.029 50.000 0.00 0.00 40.86 5.18
116 117 3.686916 AGGACTAGAACAAGGAACTGC 57.313 47.619 0.00 0.00 40.86 4.40
117 118 4.962155 ACAAGGACTAGAACAAGGAACTG 58.038 43.478 0.00 0.00 40.86 3.16
119 120 4.040584 AGGACAAGGACTAGAACAAGGAAC 59.959 45.833 0.00 0.00 0.00 3.62
120 121 4.232091 AGGACAAGGACTAGAACAAGGAA 58.768 43.478 0.00 0.00 0.00 3.36
121 122 3.858135 AGGACAAGGACTAGAACAAGGA 58.142 45.455 0.00 0.00 0.00 3.36
122 123 4.527038 TGTAGGACAAGGACTAGAACAAGG 59.473 45.833 0.00 0.00 0.00 3.61
123 124 5.010719 TGTGTAGGACAAGGACTAGAACAAG 59.989 44.000 0.00 0.00 0.00 3.16
124 125 4.897076 TGTGTAGGACAAGGACTAGAACAA 59.103 41.667 0.00 0.00 0.00 2.83
125 126 4.476297 TGTGTAGGACAAGGACTAGAACA 58.524 43.478 0.00 0.00 0.00 3.18
126 127 5.185249 TCATGTGTAGGACAAGGACTAGAAC 59.815 44.000 0.00 0.00 38.36 3.01
127 128 5.330233 TCATGTGTAGGACAAGGACTAGAA 58.670 41.667 0.00 0.00 38.36 2.10
128 129 4.930696 TCATGTGTAGGACAAGGACTAGA 58.069 43.478 0.00 0.00 38.36 2.43
129 130 5.860941 ATCATGTGTAGGACAAGGACTAG 57.139 43.478 0.00 0.00 38.36 2.57
130 131 5.833667 CCTATCATGTGTAGGACAAGGACTA 59.166 44.000 16.93 0.00 41.01 2.59
131 132 4.651503 CCTATCATGTGTAGGACAAGGACT 59.348 45.833 16.93 0.00 41.01 3.85
132 133 4.406003 ACCTATCATGTGTAGGACAAGGAC 59.594 45.833 24.27 0.00 41.01 3.85
133 134 4.620723 ACCTATCATGTGTAGGACAAGGA 58.379 43.478 24.27 0.00 41.01 3.36
134 135 5.129485 AGAACCTATCATGTGTAGGACAAGG 59.871 44.000 24.27 8.10 41.01 3.61
135 136 6.227298 AGAACCTATCATGTGTAGGACAAG 57.773 41.667 24.27 6.70 41.01 3.16
136 137 6.895756 AGTAGAACCTATCATGTGTAGGACAA 59.104 38.462 24.27 10.51 41.01 3.18
137 138 6.432581 AGTAGAACCTATCATGTGTAGGACA 58.567 40.000 24.27 10.05 41.01 4.02
138 139 6.963083 AGTAGAACCTATCATGTGTAGGAC 57.037 41.667 24.27 18.52 41.01 3.85
139 140 7.123383 TGAAGTAGAACCTATCATGTGTAGGA 58.877 38.462 24.27 7.53 41.01 2.94
140 141 7.348080 TGAAGTAGAACCTATCATGTGTAGG 57.652 40.000 19.01 19.01 43.54 3.18
152 153 8.368668 GCAAGTACCATATATGAAGTAGAACCT 58.631 37.037 14.54 0.52 0.00 3.50
153 154 8.368668 AGCAAGTACCATATATGAAGTAGAACC 58.631 37.037 14.54 0.00 0.00 3.62
162 163 9.755122 AGACAGTATAGCAAGTACCATATATGA 57.245 33.333 14.54 0.00 0.00 2.15
163 164 9.794685 CAGACAGTATAGCAAGTACCATATATG 57.205 37.037 5.68 5.68 0.00 1.78
164 165 8.470805 GCAGACAGTATAGCAAGTACCATATAT 58.529 37.037 0.00 0.00 0.00 0.86
165 166 7.670140 AGCAGACAGTATAGCAAGTACCATATA 59.330 37.037 0.00 0.00 0.00 0.86
166 167 6.495181 AGCAGACAGTATAGCAAGTACCATAT 59.505 38.462 0.00 0.00 0.00 1.78
167 168 5.833667 AGCAGACAGTATAGCAAGTACCATA 59.166 40.000 0.00 0.00 0.00 2.74
168 169 4.651503 AGCAGACAGTATAGCAAGTACCAT 59.348 41.667 0.00 0.00 0.00 3.55
169 170 4.023980 AGCAGACAGTATAGCAAGTACCA 58.976 43.478 0.00 0.00 0.00 3.25
170 171 4.657436 AGCAGACAGTATAGCAAGTACC 57.343 45.455 0.00 0.00 0.00 3.34
171 172 7.481642 TCTAAAGCAGACAGTATAGCAAGTAC 58.518 38.462 0.00 0.00 0.00 2.73
172 173 7.640597 TCTAAAGCAGACAGTATAGCAAGTA 57.359 36.000 0.00 0.00 0.00 2.24
173 174 6.531503 TCTAAAGCAGACAGTATAGCAAGT 57.468 37.500 0.00 0.00 0.00 3.16
174 175 9.138062 CATATCTAAAGCAGACAGTATAGCAAG 57.862 37.037 0.00 0.00 35.62 4.01
175 176 8.860088 TCATATCTAAAGCAGACAGTATAGCAA 58.140 33.333 0.00 0.00 35.62 3.91
176 177 8.409358 TCATATCTAAAGCAGACAGTATAGCA 57.591 34.615 0.00 0.00 35.62 3.49
180 181 8.474025 GCCTATCATATCTAAAGCAGACAGTAT 58.526 37.037 0.00 0.00 35.62 2.12
181 182 7.671819 AGCCTATCATATCTAAAGCAGACAGTA 59.328 37.037 0.00 0.00 35.62 2.74
182 183 6.496565 AGCCTATCATATCTAAAGCAGACAGT 59.503 38.462 0.00 0.00 35.62 3.55
183 184 6.934056 AGCCTATCATATCTAAAGCAGACAG 58.066 40.000 0.00 0.00 35.62 3.51
184 185 6.924913 AGCCTATCATATCTAAAGCAGACA 57.075 37.500 0.00 0.00 35.62 3.41
185 186 6.970043 CGTAGCCTATCATATCTAAAGCAGAC 59.030 42.308 0.00 0.00 35.62 3.51
186 187 6.095580 CCGTAGCCTATCATATCTAAAGCAGA 59.904 42.308 0.00 0.00 37.79 4.26
187 188 6.127591 ACCGTAGCCTATCATATCTAAAGCAG 60.128 42.308 0.00 0.00 0.00 4.24
188 189 5.715279 ACCGTAGCCTATCATATCTAAAGCA 59.285 40.000 0.00 0.00 0.00 3.91
189 190 6.210287 ACCGTAGCCTATCATATCTAAAGC 57.790 41.667 0.00 0.00 0.00 3.51
190 191 7.827701 TGAACCGTAGCCTATCATATCTAAAG 58.172 38.462 0.00 0.00 0.00 1.85
191 192 7.770366 TGAACCGTAGCCTATCATATCTAAA 57.230 36.000 0.00 0.00 0.00 1.85
192 193 7.956328 ATGAACCGTAGCCTATCATATCTAA 57.044 36.000 0.00 0.00 0.00 2.10
194 195 9.815306 ATATATGAACCGTAGCCTATCATATCT 57.185 33.333 8.24 0.00 40.81 1.98
195 196 9.847706 CATATATGAACCGTAGCCTATCATATC 57.152 37.037 6.92 0.00 40.81 1.63
196 197 8.307483 GCATATATGAACCGTAGCCTATCATAT 58.693 37.037 17.10 9.41 42.92 1.78
197 198 7.286775 TGCATATATGAACCGTAGCCTATCATA 59.713 37.037 17.10 0.00 37.38 2.15
198 199 6.098266 TGCATATATGAACCGTAGCCTATCAT 59.902 38.462 17.10 0.00 35.15 2.45
199 200 5.420739 TGCATATATGAACCGTAGCCTATCA 59.579 40.000 17.10 0.00 0.00 2.15
200 201 5.902681 TGCATATATGAACCGTAGCCTATC 58.097 41.667 17.10 0.00 0.00 2.08
201 202 5.656859 TCTGCATATATGAACCGTAGCCTAT 59.343 40.000 17.10 0.00 0.00 2.57
202 203 5.014202 TCTGCATATATGAACCGTAGCCTA 58.986 41.667 17.10 0.00 0.00 3.93
203 204 3.832490 TCTGCATATATGAACCGTAGCCT 59.168 43.478 17.10 0.00 0.00 4.58
204 205 4.188247 TCTGCATATATGAACCGTAGCC 57.812 45.455 17.10 0.00 0.00 3.93
205 206 4.092091 GCTTCTGCATATATGAACCGTAGC 59.908 45.833 17.10 11.71 39.41 3.58
206 207 5.473931 AGCTTCTGCATATATGAACCGTAG 58.526 41.667 17.10 6.33 42.74 3.51
207 208 5.468540 AGCTTCTGCATATATGAACCGTA 57.531 39.130 17.10 0.00 42.74 4.02
208 209 4.342862 AGCTTCTGCATATATGAACCGT 57.657 40.909 17.10 0.00 42.74 4.83
209 210 6.974932 AATAGCTTCTGCATATATGAACCG 57.025 37.500 17.10 0.00 42.74 4.44
210 211 8.669243 GGTAAATAGCTTCTGCATATATGAACC 58.331 37.037 17.10 0.00 42.74 3.62
211 212 9.442047 AGGTAAATAGCTTCTGCATATATGAAC 57.558 33.333 17.10 0.19 42.74 3.18
225 226 6.665680 TCTGACAGAGAGAAGGTAAATAGCTT 59.334 38.462 0.00 4.66 45.70 3.74
226 227 6.191315 TCTGACAGAGAGAAGGTAAATAGCT 58.809 40.000 0.00 0.00 35.17 3.32
227 228 6.458232 TCTGACAGAGAGAAGGTAAATAGC 57.542 41.667 0.00 0.00 0.00 2.97
228 229 6.970043 CGTTCTGACAGAGAGAAGGTAAATAG 59.030 42.308 5.10 0.00 32.90 1.73
229 230 6.625300 GCGTTCTGACAGAGAGAAGGTAAATA 60.625 42.308 5.10 0.00 37.55 1.40
230 231 5.715070 CGTTCTGACAGAGAGAAGGTAAAT 58.285 41.667 5.10 0.00 32.90 1.40
231 232 4.558898 GCGTTCTGACAGAGAGAAGGTAAA 60.559 45.833 5.10 0.00 37.55 2.01
232 233 3.057456 GCGTTCTGACAGAGAGAAGGTAA 60.057 47.826 5.10 0.00 37.55 2.85
233 234 2.488545 GCGTTCTGACAGAGAGAAGGTA 59.511 50.000 5.10 0.00 37.55 3.08
234 235 1.271102 GCGTTCTGACAGAGAGAAGGT 59.729 52.381 5.10 0.00 37.55 3.50
235 236 1.403514 GGCGTTCTGACAGAGAGAAGG 60.404 57.143 5.10 0.00 38.03 3.46
236 237 1.543802 AGGCGTTCTGACAGAGAGAAG 59.456 52.381 5.10 0.00 30.01 2.85
237 238 1.270826 CAGGCGTTCTGACAGAGAGAA 59.729 52.381 5.10 0.00 46.18 2.87
238 239 0.884514 CAGGCGTTCTGACAGAGAGA 59.115 55.000 5.10 0.00 46.18 3.10
239 240 0.884514 TCAGGCGTTCTGACAGAGAG 59.115 55.000 5.10 5.19 46.71 3.20
240 241 3.036431 TCAGGCGTTCTGACAGAGA 57.964 52.632 5.10 0.00 46.71 3.10
247 248 6.758886 AGAGATAAAATAAGTCAGGCGTTCTG 59.241 38.462 2.20 2.20 44.68 3.02
248 249 6.879400 AGAGATAAAATAAGTCAGGCGTTCT 58.121 36.000 0.00 0.00 0.00 3.01
249 250 7.921745 AGTAGAGATAAAATAAGTCAGGCGTTC 59.078 37.037 0.00 0.00 0.00 3.95
250 251 7.783042 AGTAGAGATAAAATAAGTCAGGCGTT 58.217 34.615 0.00 0.00 0.00 4.84
251 252 7.349412 AGTAGAGATAAAATAAGTCAGGCGT 57.651 36.000 0.00 0.00 0.00 5.68
317 318 9.382275 GTTGGAAATATGAGCAATTTACCAAAT 57.618 29.630 0.00 0.00 36.45 2.32
318 319 8.370940 TGTTGGAAATATGAGCAATTTACCAAA 58.629 29.630 0.00 0.00 36.45 3.28
319 320 7.901029 TGTTGGAAATATGAGCAATTTACCAA 58.099 30.769 0.00 0.00 34.63 3.67
320 321 7.473735 TGTTGGAAATATGAGCAATTTACCA 57.526 32.000 0.00 0.00 0.00 3.25
321 322 8.770438 TTTGTTGGAAATATGAGCAATTTACC 57.230 30.769 0.00 0.00 0.00 2.85
349 350 9.642343 TCCTACATTACACTTGTGAGATAGTAT 57.358 33.333 7.83 0.00 0.00 2.12
350 351 9.642343 ATCCTACATTACACTTGTGAGATAGTA 57.358 33.333 7.83 3.58 0.00 1.82
351 352 7.956328 TCCTACATTACACTTGTGAGATAGT 57.044 36.000 7.83 2.68 0.00 2.12
352 353 9.900710 GTATCCTACATTACACTTGTGAGATAG 57.099 37.037 7.83 2.65 30.05 2.08
353 354 9.416284 TGTATCCTACATTACACTTGTGAGATA 57.584 33.333 7.83 0.00 32.89 1.98
354 355 8.306313 TGTATCCTACATTACACTTGTGAGAT 57.694 34.615 7.83 0.00 32.89 2.75
355 356 7.712204 TGTATCCTACATTACACTTGTGAGA 57.288 36.000 7.83 0.00 32.89 3.27
356 357 7.981789 ACATGTATCCTACATTACACTTGTGAG 59.018 37.037 7.83 0.00 46.69 3.51
357 358 7.847096 ACATGTATCCTACATTACACTTGTGA 58.153 34.615 7.83 0.00 46.69 3.58
358 359 8.390354 CAACATGTATCCTACATTACACTTGTG 58.610 37.037 0.00 0.00 46.69 3.33
359 360 8.318412 TCAACATGTATCCTACATTACACTTGT 58.682 33.333 0.00 0.00 46.69 3.16
360 361 8.716646 TCAACATGTATCCTACATTACACTTG 57.283 34.615 0.00 0.00 46.69 3.16
361 362 9.162764 GTTCAACATGTATCCTACATTACACTT 57.837 33.333 0.00 0.00 46.69 3.16
362 363 8.540388 AGTTCAACATGTATCCTACATTACACT 58.460 33.333 0.00 0.00 46.69 3.55
363 364 8.604035 CAGTTCAACATGTATCCTACATTACAC 58.396 37.037 0.00 0.00 46.69 2.90
364 365 7.768582 CCAGTTCAACATGTATCCTACATTACA 59.231 37.037 0.00 0.00 46.69 2.41
365 366 7.985184 TCCAGTTCAACATGTATCCTACATTAC 59.015 37.037 0.00 0.00 46.69 1.89
366 367 8.084985 TCCAGTTCAACATGTATCCTACATTA 57.915 34.615 0.00 0.00 46.69 1.90
367 368 6.957631 TCCAGTTCAACATGTATCCTACATT 58.042 36.000 0.00 0.00 46.69 2.71
369 370 5.104941 CCTCCAGTTCAACATGTATCCTACA 60.105 44.000 0.00 0.00 43.80 2.74
370 371 5.128827 TCCTCCAGTTCAACATGTATCCTAC 59.871 44.000 0.00 0.00 0.00 3.18
371 372 5.277250 TCCTCCAGTTCAACATGTATCCTA 58.723 41.667 0.00 0.00 0.00 2.94
372 373 4.104086 TCCTCCAGTTCAACATGTATCCT 58.896 43.478 0.00 0.00 0.00 3.24
373 374 4.162320 TCTCCTCCAGTTCAACATGTATCC 59.838 45.833 0.00 0.00 0.00 2.59
374 375 5.127845 TCTCTCCTCCAGTTCAACATGTATC 59.872 44.000 0.00 0.00 0.00 2.24
375 376 5.026121 TCTCTCCTCCAGTTCAACATGTAT 58.974 41.667 0.00 0.00 0.00 2.29
376 377 4.416516 TCTCTCCTCCAGTTCAACATGTA 58.583 43.478 0.00 0.00 0.00 2.29
377 378 3.242867 TCTCTCCTCCAGTTCAACATGT 58.757 45.455 0.00 0.00 0.00 3.21
378 379 3.969287 TCTCTCCTCCAGTTCAACATG 57.031 47.619 0.00 0.00 0.00 3.21
379 380 6.013379 TGTTTATCTCTCCTCCAGTTCAACAT 60.013 38.462 0.00 0.00 0.00 2.71
380 381 5.306937 TGTTTATCTCTCCTCCAGTTCAACA 59.693 40.000 0.00 0.00 0.00 3.33
381 382 5.794894 TGTTTATCTCTCCTCCAGTTCAAC 58.205 41.667 0.00 0.00 0.00 3.18
382 383 6.433847 TTGTTTATCTCTCCTCCAGTTCAA 57.566 37.500 0.00 0.00 0.00 2.69
383 384 6.627087 ATTGTTTATCTCTCCTCCAGTTCA 57.373 37.500 0.00 0.00 0.00 3.18
412 413 8.989980 CCTCTTAACTAAAAGAAGACGAACATT 58.010 33.333 0.00 0.00 35.14 2.71
413 414 8.148999 ACCTCTTAACTAAAAGAAGACGAACAT 58.851 33.333 0.00 0.00 35.14 2.71
414 415 7.437267 CACCTCTTAACTAAAAGAAGACGAACA 59.563 37.037 0.00 0.00 35.14 3.18
415 416 7.095732 CCACCTCTTAACTAAAAGAAGACGAAC 60.096 40.741 0.00 0.00 35.14 3.95
416 417 6.927381 CCACCTCTTAACTAAAAGAAGACGAA 59.073 38.462 0.00 0.00 35.14 3.85
417 418 6.041296 ACCACCTCTTAACTAAAAGAAGACGA 59.959 38.462 0.00 0.00 35.14 4.20
418 419 6.221659 ACCACCTCTTAACTAAAAGAAGACG 58.778 40.000 0.00 0.00 35.14 4.18
419 420 7.443477 AGACCACCTCTTAACTAAAAGAAGAC 58.557 38.462 0.00 0.00 35.14 3.01
420 421 7.613551 AGACCACCTCTTAACTAAAAGAAGA 57.386 36.000 0.00 0.00 35.14 2.87
421 422 7.892778 GAGACCACCTCTTAACTAAAAGAAG 57.107 40.000 0.00 0.00 38.86 2.85
435 436 6.823689 TGCTTATTTTGATAAGAGACCACCTC 59.176 38.462 9.67 0.00 42.28 3.85
436 437 6.721318 TGCTTATTTTGATAAGAGACCACCT 58.279 36.000 9.67 0.00 36.49 4.00
437 438 7.283127 TGATGCTTATTTTGATAAGAGACCACC 59.717 37.037 9.67 0.00 36.49 4.61
438 439 8.125448 GTGATGCTTATTTTGATAAGAGACCAC 58.875 37.037 9.67 7.53 36.49 4.16
439 440 7.011389 CGTGATGCTTATTTTGATAAGAGACCA 59.989 37.037 9.67 0.35 36.49 4.02
440 441 7.224753 TCGTGATGCTTATTTTGATAAGAGACC 59.775 37.037 9.67 0.00 36.49 3.85
441 442 8.058915 GTCGTGATGCTTATTTTGATAAGAGAC 58.941 37.037 9.67 5.54 36.49 3.36
442 443 7.043391 CGTCGTGATGCTTATTTTGATAAGAGA 60.043 37.037 9.67 0.00 36.49 3.10
443 444 7.059817 CGTCGTGATGCTTATTTTGATAAGAG 58.940 38.462 9.67 0.00 36.49 2.85
444 445 6.533723 ACGTCGTGATGCTTATTTTGATAAGA 59.466 34.615 0.00 0.00 36.49 2.10
445 446 6.705782 ACGTCGTGATGCTTATTTTGATAAG 58.294 36.000 0.00 2.57 37.23 1.73
446 447 6.656314 ACGTCGTGATGCTTATTTTGATAA 57.344 33.333 0.00 0.00 0.00 1.75
447 448 7.940178 ATACGTCGTGATGCTTATTTTGATA 57.060 32.000 8.47 0.00 0.00 2.15
448 449 6.844696 ATACGTCGTGATGCTTATTTTGAT 57.155 33.333 8.47 0.00 0.00 2.57
449 450 6.656314 AATACGTCGTGATGCTTATTTTGA 57.344 33.333 8.47 0.00 0.00 2.69
450 451 7.582679 CCTAAATACGTCGTGATGCTTATTTTG 59.417 37.037 8.47 5.28 0.00 2.44
451 452 7.254658 CCCTAAATACGTCGTGATGCTTATTTT 60.255 37.037 8.47 0.00 0.00 1.82
452 453 6.202188 CCCTAAATACGTCGTGATGCTTATTT 59.798 38.462 8.47 6.69 0.00 1.40
453 454 5.694910 CCCTAAATACGTCGTGATGCTTATT 59.305 40.000 8.47 0.00 0.00 1.40
454 455 5.010314 TCCCTAAATACGTCGTGATGCTTAT 59.990 40.000 8.47 0.00 0.00 1.73
455 456 4.338964 TCCCTAAATACGTCGTGATGCTTA 59.661 41.667 8.47 0.00 0.00 3.09
456 457 3.131577 TCCCTAAATACGTCGTGATGCTT 59.868 43.478 8.47 0.00 0.00 3.91
457 458 2.691526 TCCCTAAATACGTCGTGATGCT 59.308 45.455 8.47 0.00 0.00 3.79
458 459 3.088194 TCCCTAAATACGTCGTGATGC 57.912 47.619 8.47 0.00 0.00 3.91
459 460 7.884816 AAATATCCCTAAATACGTCGTGATG 57.115 36.000 8.47 0.00 0.00 3.07
460 461 8.800332 ACTAAATATCCCTAAATACGTCGTGAT 58.200 33.333 8.47 2.82 0.00 3.06
461 462 8.169977 ACTAAATATCCCTAAATACGTCGTGA 57.830 34.615 8.47 0.00 0.00 4.35
462 463 8.807667 AACTAAATATCCCTAAATACGTCGTG 57.192 34.615 8.47 0.00 0.00 4.35
463 464 9.899226 GTAACTAAATATCCCTAAATACGTCGT 57.101 33.333 2.21 2.21 0.00 4.34
464 465 9.346725 GGTAACTAAATATCCCTAAATACGTCG 57.653 37.037 0.00 0.00 0.00 5.12
530 531 8.378565 CCATGGGTGTAATATAGAGAAGACAAT 58.621 37.037 2.85 0.00 0.00 2.71
531 532 7.567250 TCCATGGGTGTAATATAGAGAAGACAA 59.433 37.037 13.02 0.00 0.00 3.18
532 533 7.073208 TCCATGGGTGTAATATAGAGAAGACA 58.927 38.462 13.02 0.00 0.00 3.41
533 534 7.233757 ACTCCATGGGTGTAATATAGAGAAGAC 59.766 40.741 13.02 0.00 0.00 3.01
534 535 7.306013 ACTCCATGGGTGTAATATAGAGAAGA 58.694 38.462 13.02 0.00 0.00 2.87
535 536 7.546250 ACTCCATGGGTGTAATATAGAGAAG 57.454 40.000 13.02 0.00 0.00 2.85
536 537 8.008332 TGTACTCCATGGGTGTAATATAGAGAA 58.992 37.037 13.02 0.00 34.18 2.87
537 538 7.532199 TGTACTCCATGGGTGTAATATAGAGA 58.468 38.462 13.02 0.00 34.18 3.10
538 539 7.776618 TGTACTCCATGGGTGTAATATAGAG 57.223 40.000 13.02 0.00 34.18 2.43
539 540 8.134202 CATGTACTCCATGGGTGTAATATAGA 57.866 38.462 13.02 0.00 46.03 1.98
553 554 0.921896 AAGCCTGCCATGTACTCCAT 59.078 50.000 0.00 0.00 0.00 3.41
554 555 1.486310 CTAAGCCTGCCATGTACTCCA 59.514 52.381 0.00 0.00 0.00 3.86
555 556 1.202698 CCTAAGCCTGCCATGTACTCC 60.203 57.143 0.00 0.00 0.00 3.85
556 557 1.762957 TCCTAAGCCTGCCATGTACTC 59.237 52.381 0.00 0.00 0.00 2.59
557 558 1.879575 TCCTAAGCCTGCCATGTACT 58.120 50.000 0.00 0.00 0.00 2.73
558 559 2.104792 TCATCCTAAGCCTGCCATGTAC 59.895 50.000 0.00 0.00 0.00 2.90
559 560 2.369860 CTCATCCTAAGCCTGCCATGTA 59.630 50.000 0.00 0.00 0.00 2.29
560 561 1.142465 CTCATCCTAAGCCTGCCATGT 59.858 52.381 0.00 0.00 0.00 3.21
561 562 1.419012 TCTCATCCTAAGCCTGCCATG 59.581 52.381 0.00 0.00 0.00 3.66
562 563 1.419387 GTCTCATCCTAAGCCTGCCAT 59.581 52.381 0.00 0.00 0.00 4.40
563 564 0.833287 GTCTCATCCTAAGCCTGCCA 59.167 55.000 0.00 0.00 0.00 4.92
564 565 0.107643 GGTCTCATCCTAAGCCTGCC 59.892 60.000 0.00 0.00 0.00 4.85
565 566 0.833287 TGGTCTCATCCTAAGCCTGC 59.167 55.000 0.00 0.00 0.00 4.85
566 567 2.102252 GAGTGGTCTCATCCTAAGCCTG 59.898 54.545 0.00 0.00 40.18 4.85
567 568 2.023501 AGAGTGGTCTCATCCTAAGCCT 60.024 50.000 0.00 0.00 42.66 4.58
568 569 2.393646 AGAGTGGTCTCATCCTAAGCC 58.606 52.381 0.00 0.00 42.66 4.35
569 570 3.954904 TGTAGAGTGGTCTCATCCTAAGC 59.045 47.826 0.00 0.00 42.66 3.09
570 571 5.508825 GCATGTAGAGTGGTCTCATCCTAAG 60.509 48.000 0.00 0.00 42.66 2.18
571 572 4.342378 GCATGTAGAGTGGTCTCATCCTAA 59.658 45.833 0.00 0.00 42.66 2.69
572 573 3.891977 GCATGTAGAGTGGTCTCATCCTA 59.108 47.826 0.00 0.00 42.66 2.94
573 574 2.697751 GCATGTAGAGTGGTCTCATCCT 59.302 50.000 0.00 0.00 42.66 3.24
574 575 2.224161 GGCATGTAGAGTGGTCTCATCC 60.224 54.545 0.00 0.00 42.66 3.51
575 576 2.224161 GGGCATGTAGAGTGGTCTCATC 60.224 54.545 0.00 0.00 42.66 2.92
576 577 1.765314 GGGCATGTAGAGTGGTCTCAT 59.235 52.381 0.00 0.00 42.66 2.90
577 578 1.195115 GGGCATGTAGAGTGGTCTCA 58.805 55.000 0.00 0.00 42.66 3.27
578 579 1.137872 CTGGGCATGTAGAGTGGTCTC 59.862 57.143 0.00 0.00 40.70 3.36
579 580 1.198713 CTGGGCATGTAGAGTGGTCT 58.801 55.000 0.00 0.00 36.75 3.85
580 581 1.195115 TCTGGGCATGTAGAGTGGTC 58.805 55.000 0.00 0.00 0.00 4.02
581 582 1.487976 CATCTGGGCATGTAGAGTGGT 59.512 52.381 0.00 0.00 0.00 4.16
582 583 1.813092 GCATCTGGGCATGTAGAGTGG 60.813 57.143 0.00 0.00 0.00 4.00
583 584 1.590932 GCATCTGGGCATGTAGAGTG 58.409 55.000 0.00 0.00 0.00 3.51
584 585 0.471617 GGCATCTGGGCATGTAGAGT 59.528 55.000 0.00 0.00 42.77 3.24
585 586 0.250640 GGGCATCTGGGCATGTAGAG 60.251 60.000 0.00 0.00 45.66 2.43
586 587 0.695462 AGGGCATCTGGGCATGTAGA 60.695 55.000 0.00 0.00 45.66 2.59
587 588 1.059098 TAGGGCATCTGGGCATGTAG 58.941 55.000 0.00 0.00 45.66 2.74
588 589 1.517238 TTAGGGCATCTGGGCATGTA 58.483 50.000 0.00 0.00 45.66 2.29
589 590 0.855598 ATTAGGGCATCTGGGCATGT 59.144 50.000 0.00 0.00 45.66 3.21
590 591 1.075050 AGATTAGGGCATCTGGGCATG 59.925 52.381 0.00 0.00 45.66 4.06
591 592 1.075050 CAGATTAGGGCATCTGGGCAT 59.925 52.381 5.61 0.00 44.57 4.40
592 593 0.475475 CAGATTAGGGCATCTGGGCA 59.525 55.000 5.61 0.00 44.57 5.36
593 594 3.336122 CAGATTAGGGCATCTGGGC 57.664 57.895 5.61 0.00 44.57 5.36
597 598 4.472833 ACAAGTCTTCAGATTAGGGCATCT 59.527 41.667 0.00 0.00 33.44 2.90
598 599 4.775236 ACAAGTCTTCAGATTAGGGCATC 58.225 43.478 0.00 0.00 0.00 3.91
599 600 4.225942 TGACAAGTCTTCAGATTAGGGCAT 59.774 41.667 1.53 0.00 0.00 4.40
600 601 3.582647 TGACAAGTCTTCAGATTAGGGCA 59.417 43.478 1.53 0.00 0.00 5.36
601 602 4.207891 TGACAAGTCTTCAGATTAGGGC 57.792 45.455 1.53 0.00 0.00 5.19
602 603 6.232581 AGATGACAAGTCTTCAGATTAGGG 57.767 41.667 15.64 0.00 36.55 3.53
603 604 7.769272 GAAGATGACAAGTCTTCAGATTAGG 57.231 40.000 15.64 0.00 46.81 2.69
612 613 9.171877 GAATTAATGGAGAAGATGACAAGTCTT 57.828 33.333 1.53 0.00 38.57 3.01
613 614 8.547173 AGAATTAATGGAGAAGATGACAAGTCT 58.453 33.333 1.53 0.00 0.00 3.24
614 615 8.729805 AGAATTAATGGAGAAGATGACAAGTC 57.270 34.615 0.00 0.00 0.00 3.01
615 616 9.606631 GTAGAATTAATGGAGAAGATGACAAGT 57.393 33.333 0.00 0.00 0.00 3.16
616 617 9.050601 GGTAGAATTAATGGAGAAGATGACAAG 57.949 37.037 0.00 0.00 0.00 3.16
617 618 8.772250 AGGTAGAATTAATGGAGAAGATGACAA 58.228 33.333 0.00 0.00 0.00 3.18
618 619 8.324191 AGGTAGAATTAATGGAGAAGATGACA 57.676 34.615 0.00 0.00 0.00 3.58
619 620 9.620259 AAAGGTAGAATTAATGGAGAAGATGAC 57.380 33.333 0.00 0.00 0.00 3.06
620 621 9.618890 CAAAGGTAGAATTAATGGAGAAGATGA 57.381 33.333 0.00 0.00 0.00 2.92
621 622 9.618890 TCAAAGGTAGAATTAATGGAGAAGATG 57.381 33.333 0.00 0.00 0.00 2.90
628 629 8.977412 GGGAAATTCAAAGGTAGAATTAATGGA 58.023 33.333 0.00 0.00 42.98 3.41
629 630 8.981659 AGGGAAATTCAAAGGTAGAATTAATGG 58.018 33.333 0.00 0.00 42.98 3.16
633 634 9.901172 GAGTAGGGAAATTCAAAGGTAGAATTA 57.099 33.333 0.00 0.00 42.98 1.40
634 635 7.834681 GGAGTAGGGAAATTCAAAGGTAGAATT 59.165 37.037 0.00 0.00 45.01 2.17
635 636 7.036863 TGGAGTAGGGAAATTCAAAGGTAGAAT 60.037 37.037 0.00 0.00 37.30 2.40
636 637 6.273730 TGGAGTAGGGAAATTCAAAGGTAGAA 59.726 38.462 0.00 0.00 0.00 2.10
637 638 5.788533 TGGAGTAGGGAAATTCAAAGGTAGA 59.211 40.000 0.00 0.00 0.00 2.59
638 639 5.880887 GTGGAGTAGGGAAATTCAAAGGTAG 59.119 44.000 0.00 0.00 0.00 3.18
639 640 5.280830 GGTGGAGTAGGGAAATTCAAAGGTA 60.281 44.000 0.00 0.00 0.00 3.08
640 641 4.508584 GGTGGAGTAGGGAAATTCAAAGGT 60.509 45.833 0.00 0.00 0.00 3.50
641 642 4.017126 GGTGGAGTAGGGAAATTCAAAGG 58.983 47.826 0.00 0.00 0.00 3.11
642 643 4.923415 AGGTGGAGTAGGGAAATTCAAAG 58.077 43.478 0.00 0.00 0.00 2.77
643 644 6.457159 TTAGGTGGAGTAGGGAAATTCAAA 57.543 37.500 0.00 0.00 0.00 2.69
644 645 6.447084 AGATTAGGTGGAGTAGGGAAATTCAA 59.553 38.462 0.00 0.00 0.00 2.69
645 646 5.970640 AGATTAGGTGGAGTAGGGAAATTCA 59.029 40.000 0.00 0.00 0.00 2.57
646 647 6.502074 AGATTAGGTGGAGTAGGGAAATTC 57.498 41.667 0.00 0.00 0.00 2.17
647 648 5.070580 CGAGATTAGGTGGAGTAGGGAAATT 59.929 44.000 0.00 0.00 0.00 1.82
648 649 4.589374 CGAGATTAGGTGGAGTAGGGAAAT 59.411 45.833 0.00 0.00 0.00 2.17
649 650 3.958798 CGAGATTAGGTGGAGTAGGGAAA 59.041 47.826 0.00 0.00 0.00 3.13
684 685 5.870433 TGAAATGCTACGGACGATTTCTTAA 59.130 36.000 13.82 0.00 36.30 1.85
685 686 5.290158 GTGAAATGCTACGGACGATTTCTTA 59.710 40.000 13.82 0.00 36.30 2.10
701 702 7.007725 CGTGTCTCATTATTTTGAGTGAAATGC 59.992 37.037 1.76 0.00 43.02 3.56
708 709 5.995282 TGGTTCGTGTCTCATTATTTTGAGT 59.005 36.000 1.76 0.00 43.02 3.41
729 730 3.372675 GGCCATTAGTTGGGTTAGATGGT 60.373 47.826 0.00 0.00 46.55 3.55
732 733 3.527665 AGTGGCCATTAGTTGGGTTAGAT 59.472 43.478 9.72 0.00 46.55 1.98
735 736 3.074687 TCAAGTGGCCATTAGTTGGGTTA 59.925 43.478 9.72 0.00 46.55 2.85
744 745 3.958018 ACGGTAATTCAAGTGGCCATTA 58.042 40.909 9.72 0.00 0.00 1.90
748 749 1.883926 ACAACGGTAATTCAAGTGGCC 59.116 47.619 0.00 0.00 0.00 5.36
810 811 0.958822 GGAAGTTGCATGTTCCGGTT 59.041 50.000 10.89 0.00 33.21 4.44
865 866 4.570663 CACCTCGATCGGGCGGTC 62.571 72.222 16.41 0.00 0.00 4.79
869 870 3.969250 TTTGCCACCTCGATCGGGC 62.969 63.158 21.73 21.73 46.58 6.13
870 871 1.376683 TTTTGCCACCTCGATCGGG 60.377 57.895 16.41 12.63 0.00 5.14
871 872 0.953471 TGTTTTGCCACCTCGATCGG 60.953 55.000 16.41 5.93 0.00 4.18
872 873 0.443869 CTGTTTTGCCACCTCGATCG 59.556 55.000 9.36 9.36 0.00 3.69
892 893 4.142026 GGGCATTTATAAGAACCAACCACC 60.142 45.833 0.00 0.00 0.00 4.61
895 896 5.395214 CCAAGGGCATTTATAAGAACCAACC 60.395 44.000 0.00 0.00 0.00 3.77
928 946 1.092921 TGTTTGCGTGGAGTGACACC 61.093 55.000 0.84 0.00 38.11 4.16
940 958 1.060937 GTCAGCGGCTATGTTTGCG 59.939 57.895 0.26 0.00 0.00 4.85
945 968 2.102357 CGTCGTCAGCGGCTATGT 59.898 61.111 0.26 0.00 41.13 2.29
947 970 1.654954 AACTCGTCGTCAGCGGCTAT 61.655 55.000 0.26 0.00 41.13 2.97
959 982 5.860716 CAGTTAAGTGGTTACCTAACTCGTC 59.139 44.000 10.41 0.00 40.40 4.20
960 983 5.279156 CCAGTTAAGTGGTTACCTAACTCGT 60.279 44.000 19.68 0.00 40.40 4.18
964 987 4.453478 GTGCCAGTTAAGTGGTTACCTAAC 59.547 45.833 26.55 10.81 40.09 2.34
970 993 3.628487 GTGTTGTGCCAGTTAAGTGGTTA 59.372 43.478 26.55 15.52 40.09 2.85
977 1000 3.129638 GGAGTTTGTGTTGTGCCAGTTAA 59.870 43.478 0.00 0.00 0.00 2.01
995 1018 1.296715 GCGAAGACACCCATGGAGT 59.703 57.895 15.22 11.73 0.00 3.85
996 1019 1.450312 GGCGAAGACACCCATGGAG 60.450 63.158 15.22 8.06 31.66 3.86
997 1020 2.668632 GGCGAAGACACCCATGGA 59.331 61.111 15.22 0.00 31.66 3.41
1178 1201 1.610327 GGGGGCTTCCTCTTCTTCC 59.390 63.158 0.00 0.00 35.33 3.46
1257 1280 2.752640 TCGCCTTCCACGATCCGA 60.753 61.111 0.00 0.00 33.96 4.55
1260 1283 1.227002 GTCCTCGCCTTCCACGATC 60.227 63.158 0.00 0.00 39.12 3.69
1476 1500 2.097250 GCTGAAGCAATGCACGAAAAAC 60.097 45.455 8.35 0.00 41.59 2.43
1491 1515 3.557595 AGAACGTGAAGACAAAGCTGAAG 59.442 43.478 0.00 0.00 0.00 3.02
1546 1570 3.825014 ACAGAAGAGAGTTGGCGTAGTAA 59.175 43.478 0.00 0.00 0.00 2.24
1547 1571 3.418995 ACAGAAGAGAGTTGGCGTAGTA 58.581 45.455 0.00 0.00 0.00 1.82
1565 1589 4.499040 CACGAGTTTGGTTTTGCTAAACAG 59.501 41.667 22.19 8.78 46.74 3.16
1606 1630 4.881273 TGTGCAACTACTCATCACAAGTTT 59.119 37.500 0.00 0.00 38.04 2.66
1619 1643 9.916397 GTATGATAAATGTAAGTGTGCAACTAC 57.084 33.333 0.00 0.00 38.56 2.73
1633 1657 9.489084 ACGCAACATATACAGTATGATAAATGT 57.511 29.630 3.03 2.12 39.69 2.71
1683 1707 6.917477 TCACAAGTTGACAACATTAAAGATGC 59.083 34.615 20.08 0.00 0.00 3.91
1687 1711 8.562892 AGAGATCACAAGTTGACAACATTAAAG 58.437 33.333 20.08 5.36 36.92 1.85
1842 1866 4.717629 CAGACCGGCTTGACGCGA 62.718 66.667 15.93 0.00 40.44 5.87
1917 1941 3.449227 TACTCGAGGGCCAGCACG 61.449 66.667 18.41 6.19 0.00 5.34
1956 1980 3.449018 ACTTGATCTTGTCGATGTAGGCT 59.551 43.478 0.00 0.00 30.84 4.58
2133 2157 1.069935 GTATCCCGGCTCCAGCTTC 59.930 63.158 0.00 0.00 41.70 3.86
2364 2388 2.993264 TCCACGTCCGAGAACCCC 60.993 66.667 0.00 0.00 0.00 4.95
2640 2664 1.946768 AGAGTAGCGCTCACATCTCTC 59.053 52.381 16.34 11.37 46.47 3.20
2732 2757 4.504461 GGTGTAATATGCACTTCTCTCACG 59.496 45.833 9.60 0.00 37.07 4.35
2762 2788 8.108364 GGAGTGTATATTAGACTAGGGCTAGAA 58.892 40.741 0.00 0.00 36.97 2.10
2786 2812 2.816411 AGACGGTATTGGAGTTGAGGA 58.184 47.619 0.00 0.00 0.00 3.71
2827 2854 4.011698 GGGTTGAATTCTAGCCGGTTTTA 58.988 43.478 19.74 0.00 30.52 1.52
2856 2883 1.670791 GTCAAAACCGGTCAACAGGA 58.329 50.000 8.04 0.00 35.12 3.86
2886 2913 7.397892 TTTATTGTTCACTCAGTCAAAACCA 57.602 32.000 0.00 0.00 0.00 3.67
3169 3222 3.058293 CAGCTTGGCGAACAGTAAAATCA 60.058 43.478 0.00 0.00 0.00 2.57
3206 3259 4.974275 TCGAGATGTCCGTAAATTCGATTC 59.026 41.667 0.00 0.00 31.54 2.52
3430 3494 1.687996 CCCCCAACTCACAAAACTGGT 60.688 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.