Multiple sequence alignment - TraesCS7A01G369800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G369800 chr7A 100.000 3169 0 0 1 3169 543362682 543359514 0.000000e+00 5853
1 TraesCS7A01G369800 chr7B 92.626 1546 83 16 1012 2534 479196776 479198313 0.000000e+00 2194
2 TraesCS7A01G369800 chr7B 96.875 160 5 0 2810 2969 479200528 479200687 5.210000e-68 268
3 TraesCS7A01G369800 chr7B 92.806 139 9 1 2639 2777 479198460 479198597 1.930000e-47 200
4 TraesCS7A01G369800 chr7D 93.212 1488 80 15 1007 2491 457140546 457142015 0.000000e+00 2169
5 TraesCS7A01G369800 chr7D 93.375 483 28 3 2487 2969 457142201 457142679 0.000000e+00 712
6 TraesCS7A01G369800 chr4A 97.143 805 21 2 1 804 601200887 601201690 0.000000e+00 1358
7 TraesCS7A01G369800 chr2B 96.005 801 31 1 1 800 64889408 64890208 0.000000e+00 1301
8 TraesCS7A01G369800 chr2B 94.424 807 42 3 1 804 769931026 769931832 0.000000e+00 1238
9 TraesCS7A01G369800 chr2A 96.547 753 26 0 49 801 691400845 691400093 0.000000e+00 1247
10 TraesCS7A01G369800 chr5D 94.804 789 41 0 1 789 318864537 318865325 0.000000e+00 1230
11 TraesCS7A01G369800 chr5D 93.890 802 47 2 7 807 522150857 522151657 0.000000e+00 1208
12 TraesCS7A01G369800 chr3B 95.806 763 30 2 39 800 58445106 58444345 0.000000e+00 1230
13 TraesCS7A01G369800 chr2D 93.711 795 49 1 7 800 629826133 629825339 0.000000e+00 1190
14 TraesCS7A01G369800 chr5A 84.113 812 121 6 2 806 643619674 643620484 0.000000e+00 778


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G369800 chr7A 543359514 543362682 3168 True 5853.000000 5853 100.000000 1 3169 1 chr7A.!!$R1 3168
1 TraesCS7A01G369800 chr7B 479196776 479200687 3911 False 887.333333 2194 94.102333 1012 2969 3 chr7B.!!$F1 1957
2 TraesCS7A01G369800 chr7D 457140546 457142679 2133 False 1440.500000 2169 93.293500 1007 2969 2 chr7D.!!$F1 1962
3 TraesCS7A01G369800 chr4A 601200887 601201690 803 False 1358.000000 1358 97.143000 1 804 1 chr4A.!!$F1 803
4 TraesCS7A01G369800 chr2B 64889408 64890208 800 False 1301.000000 1301 96.005000 1 800 1 chr2B.!!$F1 799
5 TraesCS7A01G369800 chr2B 769931026 769931832 806 False 1238.000000 1238 94.424000 1 804 1 chr2B.!!$F2 803
6 TraesCS7A01G369800 chr2A 691400093 691400845 752 True 1247.000000 1247 96.547000 49 801 1 chr2A.!!$R1 752
7 TraesCS7A01G369800 chr5D 318864537 318865325 788 False 1230.000000 1230 94.804000 1 789 1 chr5D.!!$F1 788
8 TraesCS7A01G369800 chr5D 522150857 522151657 800 False 1208.000000 1208 93.890000 7 807 1 chr5D.!!$F2 800
9 TraesCS7A01G369800 chr3B 58444345 58445106 761 True 1230.000000 1230 95.806000 39 800 1 chr3B.!!$R1 761
10 TraesCS7A01G369800 chr2D 629825339 629826133 794 True 1190.000000 1190 93.711000 7 800 1 chr2D.!!$R1 793
11 TraesCS7A01G369800 chr5A 643619674 643620484 810 False 778.000000 778 84.113000 2 806 1 chr5A.!!$F1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 912 0.037419 GTGTAAACGGGCCGGTCTAA 60.037 55.0 31.78 10.47 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2645 2954 0.247736 ATCACGTGAGAAGGCTGTCC 59.752 55.0 24.41 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 6.492429 AGCCTGGTACTTACGTGATGATATAA 59.508 38.462 0.00 0.00 0.00 0.98
317 321 6.334102 TGTTGGCGTTATGAAGGTAAATTT 57.666 33.333 0.00 0.00 0.00 1.82
383 387 1.069973 CATTGCAAGAAACAGCGACGA 60.070 47.619 4.94 0.00 0.00 4.20
431 435 1.833630 CCTCCCTAAGTGCAGTGATGA 59.166 52.381 0.00 0.00 0.00 2.92
523 528 0.881796 ATTCGAGACAGACTGTGCGA 59.118 50.000 20.21 20.21 33.79 5.10
574 579 0.548031 GATCAGGCCAAGATGGTGGA 59.452 55.000 14.65 0.00 41.65 4.02
638 643 3.903714 TCCTGGAGAGTGACAAAGATTGA 59.096 43.478 0.00 0.00 0.00 2.57
821 827 7.524717 AAAAAGATGCTAGCCTAGTTTTTCA 57.475 32.000 13.29 0.00 0.00 2.69
822 828 6.502136 AAAGATGCTAGCCTAGTTTTTCAC 57.498 37.500 13.29 0.00 0.00 3.18
823 829 4.518249 AGATGCTAGCCTAGTTTTTCACC 58.482 43.478 13.29 0.00 0.00 4.02
824 830 3.780804 TGCTAGCCTAGTTTTTCACCA 57.219 42.857 13.29 0.00 0.00 4.17
825 831 4.093472 TGCTAGCCTAGTTTTTCACCAA 57.907 40.909 13.29 0.00 0.00 3.67
826 832 4.662278 TGCTAGCCTAGTTTTTCACCAAT 58.338 39.130 13.29 0.00 0.00 3.16
827 833 5.076873 TGCTAGCCTAGTTTTTCACCAATT 58.923 37.500 13.29 0.00 0.00 2.32
828 834 5.538433 TGCTAGCCTAGTTTTTCACCAATTT 59.462 36.000 13.29 0.00 0.00 1.82
829 835 6.041523 TGCTAGCCTAGTTTTTCACCAATTTT 59.958 34.615 13.29 0.00 0.00 1.82
830 836 6.929049 GCTAGCCTAGTTTTTCACCAATTTTT 59.071 34.615 2.29 0.00 0.00 1.94
877 883 3.535280 AAAAACAGGGAACAAACGCAT 57.465 38.095 0.00 0.00 0.00 4.73
878 884 4.657436 AAAAACAGGGAACAAACGCATA 57.343 36.364 0.00 0.00 0.00 3.14
879 885 3.915437 AAACAGGGAACAAACGCATAG 57.085 42.857 0.00 0.00 0.00 2.23
880 886 2.851263 ACAGGGAACAAACGCATAGA 57.149 45.000 0.00 0.00 0.00 1.98
881 887 2.423577 ACAGGGAACAAACGCATAGAC 58.576 47.619 0.00 0.00 0.00 2.59
882 888 2.224426 ACAGGGAACAAACGCATAGACA 60.224 45.455 0.00 0.00 0.00 3.41
883 889 2.811431 CAGGGAACAAACGCATAGACAA 59.189 45.455 0.00 0.00 0.00 3.18
884 890 3.074412 AGGGAACAAACGCATAGACAAG 58.926 45.455 0.00 0.00 0.00 3.16
885 891 3.071479 GGGAACAAACGCATAGACAAGA 58.929 45.455 0.00 0.00 0.00 3.02
886 892 3.125316 GGGAACAAACGCATAGACAAGAG 59.875 47.826 0.00 0.00 0.00 2.85
887 893 3.125316 GGAACAAACGCATAGACAAGAGG 59.875 47.826 0.00 0.00 0.00 3.69
888 894 3.402628 ACAAACGCATAGACAAGAGGT 57.597 42.857 0.00 0.00 0.00 3.85
889 895 3.067106 ACAAACGCATAGACAAGAGGTG 58.933 45.455 0.00 0.00 0.00 4.00
890 896 3.067106 CAAACGCATAGACAAGAGGTGT 58.933 45.455 0.00 0.00 45.74 4.16
891 897 4.242475 CAAACGCATAGACAAGAGGTGTA 58.758 43.478 0.00 0.00 41.96 2.90
892 898 4.530710 AACGCATAGACAAGAGGTGTAA 57.469 40.909 0.00 0.00 41.96 2.41
893 899 4.530710 ACGCATAGACAAGAGGTGTAAA 57.469 40.909 0.00 0.00 41.96 2.01
894 900 4.243270 ACGCATAGACAAGAGGTGTAAAC 58.757 43.478 0.00 0.00 41.96 2.01
895 901 3.303495 CGCATAGACAAGAGGTGTAAACG 59.697 47.826 0.00 0.00 41.96 3.60
896 902 3.617263 GCATAGACAAGAGGTGTAAACGG 59.383 47.826 0.00 0.00 41.96 4.44
897 903 2.833631 AGACAAGAGGTGTAAACGGG 57.166 50.000 0.00 0.00 41.96 5.28
898 904 1.154197 GACAAGAGGTGTAAACGGGC 58.846 55.000 0.00 0.00 41.96 6.13
899 905 0.250597 ACAAGAGGTGTAAACGGGCC 60.251 55.000 0.00 0.00 39.29 5.80
900 906 1.004200 AAGAGGTGTAAACGGGCCG 60.004 57.895 27.06 27.06 0.00 6.13
901 907 2.435410 GAGGTGTAAACGGGCCGG 60.435 66.667 31.78 12.53 0.00 6.13
902 908 3.243816 AGGTGTAAACGGGCCGGT 61.244 61.111 31.78 24.00 0.00 5.28
903 909 2.743538 GGTGTAAACGGGCCGGTC 60.744 66.667 31.78 13.92 0.00 4.79
904 910 2.344872 GTGTAAACGGGCCGGTCT 59.655 61.111 31.78 16.87 0.00 3.85
905 911 1.591183 GTGTAAACGGGCCGGTCTA 59.409 57.895 31.78 15.79 0.00 2.59
906 912 0.037419 GTGTAAACGGGCCGGTCTAA 60.037 55.000 31.78 10.47 0.00 2.10
907 913 0.903942 TGTAAACGGGCCGGTCTAAT 59.096 50.000 31.78 11.57 0.00 1.73
908 914 2.106566 TGTAAACGGGCCGGTCTAATA 58.893 47.619 31.78 10.34 0.00 0.98
909 915 2.499289 TGTAAACGGGCCGGTCTAATAA 59.501 45.455 31.78 4.14 0.00 1.40
910 916 2.028420 AAACGGGCCGGTCTAATAAC 57.972 50.000 31.78 0.00 0.00 1.89
911 917 0.179103 AACGGGCCGGTCTAATAACG 60.179 55.000 31.78 1.50 0.00 3.18
912 918 1.037030 ACGGGCCGGTCTAATAACGA 61.037 55.000 31.78 0.00 0.00 3.85
913 919 0.102844 CGGGCCGGTCTAATAACGAA 59.897 55.000 20.56 0.00 0.00 3.85
914 920 1.861971 GGGCCGGTCTAATAACGAAG 58.138 55.000 5.77 0.00 0.00 3.79
915 921 1.215244 GGCCGGTCTAATAACGAAGC 58.785 55.000 1.90 0.00 0.00 3.86
916 922 1.472026 GGCCGGTCTAATAACGAAGCA 60.472 52.381 1.90 0.00 0.00 3.91
917 923 1.591619 GCCGGTCTAATAACGAAGCAC 59.408 52.381 1.90 0.00 0.00 4.40
918 924 2.199236 CCGGTCTAATAACGAAGCACC 58.801 52.381 0.00 0.00 0.00 5.01
919 925 1.850441 CGGTCTAATAACGAAGCACCG 59.150 52.381 0.00 0.00 39.38 4.94
920 926 1.591619 GGTCTAATAACGAAGCACCGC 59.408 52.381 0.00 0.00 0.00 5.68
921 927 1.254570 GTCTAATAACGAAGCACCGCG 59.745 52.381 0.00 0.00 0.00 6.46
922 928 0.575390 CTAATAACGAAGCACCGCGG 59.425 55.000 26.86 26.86 0.00 6.46
923 929 0.806884 TAATAACGAAGCACCGCGGG 60.807 55.000 31.76 19.49 0.00 6.13
936 942 4.101790 GCGGGCGATGTGGTGTTG 62.102 66.667 0.00 0.00 0.00 3.33
937 943 2.668212 CGGGCGATGTGGTGTTGT 60.668 61.111 0.00 0.00 0.00 3.32
938 944 2.258013 CGGGCGATGTGGTGTTGTT 61.258 57.895 0.00 0.00 0.00 2.83
939 945 0.951525 CGGGCGATGTGGTGTTGTTA 60.952 55.000 0.00 0.00 0.00 2.41
940 946 0.519961 GGGCGATGTGGTGTTGTTAC 59.480 55.000 0.00 0.00 0.00 2.50
941 947 1.519408 GGCGATGTGGTGTTGTTACT 58.481 50.000 0.00 0.00 0.00 2.24
942 948 1.463444 GGCGATGTGGTGTTGTTACTC 59.537 52.381 0.00 0.00 0.00 2.59
943 949 1.126113 GCGATGTGGTGTTGTTACTCG 59.874 52.381 0.00 0.00 0.00 4.18
944 950 1.126113 CGATGTGGTGTTGTTACTCGC 59.874 52.381 0.00 0.00 0.00 5.03
945 951 2.139917 GATGTGGTGTTGTTACTCGCA 58.860 47.619 0.00 0.00 0.00 5.10
946 952 1.577468 TGTGGTGTTGTTACTCGCAG 58.423 50.000 0.00 0.00 0.00 5.18
947 953 0.234884 GTGGTGTTGTTACTCGCAGC 59.765 55.000 0.00 0.00 0.00 5.25
948 954 0.179070 TGGTGTTGTTACTCGCAGCA 60.179 50.000 0.00 0.00 37.07 4.41
949 955 0.512952 GGTGTTGTTACTCGCAGCAG 59.487 55.000 0.00 0.00 0.00 4.24
950 956 0.512952 GTGTTGTTACTCGCAGCAGG 59.487 55.000 0.00 0.00 0.00 4.85
951 957 1.227999 TGTTGTTACTCGCAGCAGGC 61.228 55.000 0.00 0.00 39.90 4.85
964 970 3.337619 CAGGCGATGCATACCAGC 58.662 61.111 18.03 12.59 0.00 4.85
969 975 2.111878 GATGCATACCAGCGGCCT 59.888 61.111 0.00 0.00 37.31 5.19
970 976 1.963338 GATGCATACCAGCGGCCTC 60.963 63.158 0.00 0.00 37.31 4.70
971 977 3.482232 ATGCATACCAGCGGCCTCC 62.482 63.158 0.00 0.00 37.31 4.30
972 978 3.866582 GCATACCAGCGGCCTCCT 61.867 66.667 0.00 0.00 0.00 3.69
973 979 2.911143 CATACCAGCGGCCTCCTT 59.089 61.111 0.00 0.00 0.00 3.36
974 980 1.224592 CATACCAGCGGCCTCCTTT 59.775 57.895 0.00 0.00 0.00 3.11
975 981 0.815615 CATACCAGCGGCCTCCTTTC 60.816 60.000 0.00 0.00 0.00 2.62
976 982 1.984288 ATACCAGCGGCCTCCTTTCC 61.984 60.000 0.00 0.00 0.00 3.13
978 984 4.394712 CAGCGGCCTCCTTTCCGT 62.395 66.667 0.00 0.00 46.79 4.69
979 985 4.394712 AGCGGCCTCCTTTCCGTG 62.395 66.667 0.00 0.00 46.79 4.94
980 986 4.699522 GCGGCCTCCTTTCCGTGT 62.700 66.667 0.00 0.00 46.79 4.49
981 987 2.742372 CGGCCTCCTTTCCGTGTG 60.742 66.667 0.00 0.00 40.72 3.82
982 988 2.359975 GGCCTCCTTTCCGTGTGG 60.360 66.667 0.00 0.00 0.00 4.17
983 989 2.430367 GCCTCCTTTCCGTGTGGT 59.570 61.111 0.00 0.00 36.30 4.16
984 990 1.966451 GCCTCCTTTCCGTGTGGTG 60.966 63.158 0.00 0.00 36.30 4.17
985 991 1.302511 CCTCCTTTCCGTGTGGTGG 60.303 63.158 0.00 0.00 36.30 4.61
986 992 1.302511 CTCCTTTCCGTGTGGTGGG 60.303 63.158 0.00 0.00 36.30 4.61
987 993 1.764571 CTCCTTTCCGTGTGGTGGGA 61.765 60.000 0.00 0.00 36.30 4.37
988 994 1.131303 TCCTTTCCGTGTGGTGGGAT 61.131 55.000 0.00 0.00 36.30 3.85
989 995 0.251165 CCTTTCCGTGTGGTGGGATT 60.251 55.000 0.00 0.00 36.30 3.01
990 996 0.881118 CTTTCCGTGTGGTGGGATTG 59.119 55.000 0.00 0.00 36.30 2.67
991 997 0.538516 TTTCCGTGTGGTGGGATTGG 60.539 55.000 0.00 0.00 36.30 3.16
992 998 2.361104 CCGTGTGGTGGGATTGGG 60.361 66.667 0.00 0.00 0.00 4.12
993 999 2.753701 CGTGTGGTGGGATTGGGA 59.246 61.111 0.00 0.00 0.00 4.37
994 1000 1.074072 CGTGTGGTGGGATTGGGAA 59.926 57.895 0.00 0.00 0.00 3.97
995 1001 1.241315 CGTGTGGTGGGATTGGGAAC 61.241 60.000 0.00 0.00 0.00 3.62
996 1002 0.178975 GTGTGGTGGGATTGGGAACA 60.179 55.000 0.00 0.00 39.83 3.18
1008 1014 0.392461 TGGGAACAACGATGCCTAGC 60.392 55.000 0.00 0.00 37.44 3.42
1020 1026 2.278466 CCTAGCAGAGACGCGCAG 60.278 66.667 5.73 2.42 36.85 5.18
1024 1030 0.319555 TAGCAGAGACGCGCAGTTTT 60.320 50.000 5.73 0.00 36.85 2.43
1027 1033 1.698165 CAGAGACGCGCAGTTTTCTA 58.302 50.000 5.73 0.00 0.00 2.10
1030 1036 2.731976 AGAGACGCGCAGTTTTCTAAAG 59.268 45.455 5.73 0.00 0.00 1.85
1172 1178 2.045536 GCCTTGGCTCAGACCCAG 60.046 66.667 4.11 0.00 33.13 4.45
1204 1210 1.990614 GGTCCTCACACCCCTCTCC 60.991 68.421 0.00 0.00 0.00 3.71
1256 1262 4.731612 CGTCCGCAGCAGAGCAGT 62.732 66.667 0.00 0.00 0.00 4.40
1304 1310 2.833604 AATCCTCACCAGCAGCAGGC 62.834 60.000 3.14 0.00 45.30 4.85
1320 1326 4.779733 GCCGGAGTGGGAGGAGGA 62.780 72.222 5.05 0.00 38.63 3.71
1372 1378 2.996621 CACGAGGTGATTGTTCTTCCTC 59.003 50.000 0.00 0.00 38.79 3.71
1381 1390 0.845102 TGTTCTTCCTCCCCCTTCCC 60.845 60.000 0.00 0.00 0.00 3.97
1422 1431 4.554036 GCGAGCCCCATCCCTCAC 62.554 72.222 0.00 0.00 0.00 3.51
1636 1645 2.487532 GCCTCATGGATGCTGCCAC 61.488 63.158 0.00 0.00 41.56 5.01
1742 1751 1.677637 CTTACCTGCCCTCGGAGACC 61.678 65.000 6.58 0.00 0.00 3.85
1913 1922 1.605165 GGAGAGGATCGGATCGGCT 60.605 63.158 11.62 10.71 42.67 5.52
1928 1937 1.754234 GGCTCTACCGGTCCCGTTA 60.754 63.158 12.40 0.00 37.81 3.18
2093 2102 2.159421 ACAGTTCTACGATGTGCCTACG 60.159 50.000 0.00 0.00 0.00 3.51
2134 2143 3.379445 ATCACCGCCGTCGAAGGT 61.379 61.111 18.88 8.17 39.12 3.50
2149 2158 2.302157 CGAAGGTAGACAGGGTTCCTTT 59.698 50.000 0.00 0.00 38.42 3.11
2265 2274 4.299586 TCTGTTATGGGAATGTCAGCAA 57.700 40.909 0.00 0.00 0.00 3.91
2278 2287 7.653311 GGGAATGTCAGCAATAATTTTATGGAC 59.347 37.037 0.00 0.00 0.00 4.02
2286 2295 8.017373 CAGCAATAATTTTATGGACAGTATCGG 58.983 37.037 0.00 0.00 0.00 4.18
2326 2347 5.772825 TTGAATTAGTAATGCAGGGATGC 57.227 39.130 3.73 0.00 0.00 3.91
2334 2355 3.364441 GCAGGGATGCGTGCAACA 61.364 61.111 24.49 0.00 39.62 3.33
2474 2509 6.153510 ACTCTTTGGCCTCCTATTTTTCATTC 59.846 38.462 3.32 0.00 0.00 2.67
2510 2735 8.719645 ATCTATCAGATAGTGCCTTAGAAACT 57.280 34.615 15.85 0.00 32.12 2.66
2514 2739 6.864342 TCAGATAGTGCCTTAGAAACTGTAC 58.136 40.000 0.00 0.00 0.00 2.90
2575 2884 3.777522 CTCTATGAAGTCCCAAGTTCCCT 59.222 47.826 0.00 0.00 34.45 4.20
2617 2926 8.636213 AGTCATTCAAACATTTGTTCATCTCTT 58.364 29.630 4.36 0.00 37.25 2.85
2618 2927 8.909671 GTCATTCAAACATTTGTTCATCTCTTC 58.090 33.333 4.36 0.00 37.25 2.87
2619 2928 8.853126 TCATTCAAACATTTGTTCATCTCTTCT 58.147 29.630 4.36 0.00 37.25 2.85
2620 2929 9.472361 CATTCAAACATTTGTTCATCTCTTCTT 57.528 29.630 4.36 0.00 37.25 2.52
2623 2932 8.786898 TCAAACATTTGTTCATCTCTTCTTAGG 58.213 33.333 4.36 0.00 37.25 2.69
2624 2933 8.571336 CAAACATTTGTTCATCTCTTCTTAGGT 58.429 33.333 0.00 0.00 37.25 3.08
2645 2954 6.392354 AGGTGTCATAGTTTGCATTGAAATG 58.608 36.000 0.00 0.00 39.40 2.32
2650 2959 6.529125 GTCATAGTTTGCATTGAAATGGACAG 59.471 38.462 5.25 0.00 36.44 3.51
2677 2986 4.270084 TCTCACGTGATTTAATCAATCGGC 59.730 41.667 20.40 3.52 44.07 5.54
2713 3022 0.609131 ACCATGTAAGGTGCCTGTGC 60.609 55.000 0.00 0.00 41.30 4.57
2746 3055 6.985059 ACAGTAGAAGTCTGAAACAGGTTAAC 59.015 38.462 0.00 0.00 36.81 2.01
2805 3429 4.887748 TGAGAACAGTAGAGCCTTTCTTG 58.112 43.478 0.00 0.00 37.36 3.02
2831 5038 7.606456 GGGTATCTGATTGAAAGTTTACACAGA 59.394 37.037 12.93 12.93 37.50 3.41
2937 5144 9.390795 CATCTTGTAAAAAGAAGATTGACTGTG 57.609 33.333 0.00 0.00 36.90 3.66
2969 5176 8.519799 AGACAAGAAATTACCACAAAAGAAGA 57.480 30.769 0.00 0.00 0.00 2.87
2970 5177 8.406297 AGACAAGAAATTACCACAAAAGAAGAC 58.594 33.333 0.00 0.00 0.00 3.01
2971 5178 8.062065 ACAAGAAATTACCACAAAAGAAGACA 57.938 30.769 0.00 0.00 0.00 3.41
2972 5179 8.695456 ACAAGAAATTACCACAAAAGAAGACAT 58.305 29.630 0.00 0.00 0.00 3.06
2973 5180 8.971321 CAAGAAATTACCACAAAAGAAGACATG 58.029 33.333 0.00 0.00 0.00 3.21
2974 5181 8.237811 AGAAATTACCACAAAAGAAGACATGT 57.762 30.769 0.00 0.00 0.00 3.21
2975 5182 9.349713 AGAAATTACCACAAAAGAAGACATGTA 57.650 29.630 0.00 0.00 0.00 2.29
2976 5183 9.959749 GAAATTACCACAAAAGAAGACATGTAA 57.040 29.630 0.00 0.00 0.00 2.41
2977 5184 9.744468 AAATTACCACAAAAGAAGACATGTAAC 57.256 29.630 0.00 0.00 0.00 2.50
2978 5185 7.867305 TTACCACAAAAGAAGACATGTAACA 57.133 32.000 0.00 0.00 0.00 2.41
2979 5186 6.959639 ACCACAAAAGAAGACATGTAACAT 57.040 33.333 0.00 0.00 0.00 2.71
2980 5187 7.346751 ACCACAAAAGAAGACATGTAACATT 57.653 32.000 0.00 0.00 0.00 2.71
2981 5188 7.202526 ACCACAAAAGAAGACATGTAACATTG 58.797 34.615 0.00 2.87 0.00 2.82
2982 5189 6.642131 CCACAAAAGAAGACATGTAACATTGG 59.358 38.462 0.00 0.00 0.00 3.16
2983 5190 7.424803 CACAAAAGAAGACATGTAACATTGGA 58.575 34.615 0.00 0.00 0.00 3.53
2984 5191 8.084073 CACAAAAGAAGACATGTAACATTGGAT 58.916 33.333 0.00 0.00 0.00 3.41
2985 5192 8.084073 ACAAAAGAAGACATGTAACATTGGATG 58.916 33.333 0.00 0.00 0.00 3.51
2986 5193 5.824904 AGAAGACATGTAACATTGGATGC 57.175 39.130 0.00 0.00 0.00 3.91
2987 5194 5.255687 AGAAGACATGTAACATTGGATGCA 58.744 37.500 0.00 0.00 0.00 3.96
2988 5195 5.711506 AGAAGACATGTAACATTGGATGCAA 59.288 36.000 0.79 0.79 0.00 4.08
2989 5196 5.981088 AGACATGTAACATTGGATGCAAA 57.019 34.783 2.94 0.00 0.00 3.68
2990 5197 5.713025 AGACATGTAACATTGGATGCAAAC 58.287 37.500 2.94 0.00 0.00 2.93
2991 5198 4.819769 ACATGTAACATTGGATGCAAACC 58.180 39.130 2.94 6.38 0.00 3.27
2992 5199 4.527816 ACATGTAACATTGGATGCAAACCT 59.472 37.500 2.94 0.00 0.00 3.50
2993 5200 4.517952 TGTAACATTGGATGCAAACCTG 57.482 40.909 2.94 0.18 0.00 4.00
2994 5201 3.257873 TGTAACATTGGATGCAAACCTGG 59.742 43.478 2.94 0.00 0.00 4.45
2995 5202 2.307496 ACATTGGATGCAAACCTGGA 57.693 45.000 2.94 2.30 0.00 3.86
2996 5203 2.607499 ACATTGGATGCAAACCTGGAA 58.393 42.857 2.94 2.07 0.00 3.53
2997 5204 2.971330 ACATTGGATGCAAACCTGGAAA 59.029 40.909 2.94 1.77 0.00 3.13
2998 5205 3.583966 ACATTGGATGCAAACCTGGAAAT 59.416 39.130 2.94 3.71 0.00 2.17
2999 5206 4.041938 ACATTGGATGCAAACCTGGAAATT 59.958 37.500 2.94 0.00 0.00 1.82
3000 5207 4.703379 TTGGATGCAAACCTGGAAATTT 57.297 36.364 0.00 0.00 0.00 1.82
3001 5208 4.703379 TGGATGCAAACCTGGAAATTTT 57.297 36.364 0.00 0.00 0.00 1.82
3002 5209 5.046288 TGGATGCAAACCTGGAAATTTTT 57.954 34.783 0.00 0.00 0.00 1.94
3003 5210 5.062528 TGGATGCAAACCTGGAAATTTTTC 58.937 37.500 0.00 0.00 36.46 2.29
3004 5211 5.163216 TGGATGCAAACCTGGAAATTTTTCT 60.163 36.000 0.00 0.00 37.35 2.52
3005 5212 5.179929 GGATGCAAACCTGGAAATTTTTCTG 59.820 40.000 0.00 0.00 37.35 3.02
3006 5213 5.096443 TGCAAACCTGGAAATTTTTCTGT 57.904 34.783 0.00 0.00 37.35 3.41
3007 5214 6.227298 TGCAAACCTGGAAATTTTTCTGTA 57.773 33.333 0.00 0.00 37.35 2.74
3008 5215 6.279882 TGCAAACCTGGAAATTTTTCTGTAG 58.720 36.000 0.00 0.98 37.35 2.74
3009 5216 6.097554 TGCAAACCTGGAAATTTTTCTGTAGA 59.902 34.615 0.00 0.00 37.35 2.59
3010 5217 6.983890 GCAAACCTGGAAATTTTTCTGTAGAA 59.016 34.615 0.00 0.00 37.35 2.10
3011 5218 7.042725 GCAAACCTGGAAATTTTTCTGTAGAAC 60.043 37.037 0.00 0.00 37.35 3.01
3012 5219 7.898014 AACCTGGAAATTTTTCTGTAGAACT 57.102 32.000 0.00 0.00 37.35 3.01
3013 5220 7.898014 ACCTGGAAATTTTTCTGTAGAACTT 57.102 32.000 0.00 0.00 37.35 2.66
3014 5221 8.306313 ACCTGGAAATTTTTCTGTAGAACTTT 57.694 30.769 0.00 0.00 37.35 2.66
3015 5222 9.416284 ACCTGGAAATTTTTCTGTAGAACTTTA 57.584 29.630 0.00 0.00 37.35 1.85
3027 5234 9.706691 TTCTGTAGAACTTTATTCTGGTACAAG 57.293 33.333 0.00 0.00 38.70 3.16
3028 5235 8.867097 TCTGTAGAACTTTATTCTGGTACAAGT 58.133 33.333 0.00 0.00 38.70 3.16
3029 5236 9.490379 CTGTAGAACTTTATTCTGGTACAAGTT 57.510 33.333 5.26 5.26 39.76 2.66
3030 5237 9.841295 TGTAGAACTTTATTCTGGTACAAGTTT 57.159 29.630 0.00 0.00 37.71 2.66
3056 5263 9.706691 TTATAATTTTCGACAAGAGAGTTCAGT 57.293 29.630 0.00 0.00 0.00 3.41
3057 5264 6.532365 AATTTTCGACAAGAGAGTTCAGTC 57.468 37.500 0.00 0.00 0.00 3.51
3058 5265 3.644884 TTCGACAAGAGAGTTCAGTCC 57.355 47.619 0.00 0.00 31.05 3.85
3059 5266 2.583143 TCGACAAGAGAGTTCAGTCCA 58.417 47.619 0.00 0.00 31.05 4.02
3060 5267 3.157881 TCGACAAGAGAGTTCAGTCCAT 58.842 45.455 0.00 0.00 31.05 3.41
3061 5268 3.191581 TCGACAAGAGAGTTCAGTCCATC 59.808 47.826 0.00 0.00 31.05 3.51
3062 5269 3.057245 CGACAAGAGAGTTCAGTCCATCA 60.057 47.826 0.00 0.00 31.05 3.07
3063 5270 4.559502 CGACAAGAGAGTTCAGTCCATCAA 60.560 45.833 0.00 0.00 31.05 2.57
3064 5271 4.892433 ACAAGAGAGTTCAGTCCATCAAG 58.108 43.478 0.00 0.00 0.00 3.02
3065 5272 4.590647 ACAAGAGAGTTCAGTCCATCAAGA 59.409 41.667 0.00 0.00 0.00 3.02
3066 5273 5.248020 ACAAGAGAGTTCAGTCCATCAAGAT 59.752 40.000 0.00 0.00 0.00 2.40
3067 5274 6.438741 ACAAGAGAGTTCAGTCCATCAAGATA 59.561 38.462 0.00 0.00 0.00 1.98
3068 5275 7.125507 ACAAGAGAGTTCAGTCCATCAAGATAT 59.874 37.037 0.00 0.00 0.00 1.63
3069 5276 7.288810 AGAGAGTTCAGTCCATCAAGATATC 57.711 40.000 0.00 0.00 0.00 1.63
3070 5277 6.838090 AGAGAGTTCAGTCCATCAAGATATCA 59.162 38.462 5.32 0.00 0.00 2.15
3071 5278 7.344093 AGAGAGTTCAGTCCATCAAGATATCAA 59.656 37.037 5.32 0.00 0.00 2.57
3072 5279 7.855375 AGAGTTCAGTCCATCAAGATATCAAA 58.145 34.615 5.32 0.00 0.00 2.69
3073 5280 8.324306 AGAGTTCAGTCCATCAAGATATCAAAA 58.676 33.333 5.32 0.00 0.00 2.44
3074 5281 8.868522 AGTTCAGTCCATCAAGATATCAAAAA 57.131 30.769 5.32 0.00 0.00 1.94
3075 5282 9.471702 AGTTCAGTCCATCAAGATATCAAAAAT 57.528 29.630 5.32 0.00 0.00 1.82
3103 5310 8.978874 ATACAAATAATGGACAGCACATAGAA 57.021 30.769 0.00 0.00 0.00 2.10
3104 5311 7.325660 ACAAATAATGGACAGCACATAGAAG 57.674 36.000 0.00 0.00 0.00 2.85
3105 5312 6.183360 ACAAATAATGGACAGCACATAGAAGC 60.183 38.462 0.00 0.00 0.00 3.86
3106 5313 3.354948 AATGGACAGCACATAGAAGCA 57.645 42.857 0.00 0.00 0.00 3.91
3107 5314 2.857186 TGGACAGCACATAGAAGCAA 57.143 45.000 0.00 0.00 0.00 3.91
3108 5315 2.703416 TGGACAGCACATAGAAGCAAG 58.297 47.619 0.00 0.00 0.00 4.01
3109 5316 2.038952 TGGACAGCACATAGAAGCAAGT 59.961 45.455 0.00 0.00 0.00 3.16
3110 5317 3.077359 GGACAGCACATAGAAGCAAGTT 58.923 45.455 0.00 0.00 0.00 2.66
3111 5318 3.503748 GGACAGCACATAGAAGCAAGTTT 59.496 43.478 0.00 0.00 0.00 2.66
3112 5319 4.695455 GGACAGCACATAGAAGCAAGTTTA 59.305 41.667 0.00 0.00 0.00 2.01
3113 5320 5.355350 GGACAGCACATAGAAGCAAGTTTAT 59.645 40.000 0.00 0.00 0.00 1.40
3114 5321 6.187125 ACAGCACATAGAAGCAAGTTTATG 57.813 37.500 0.00 0.00 0.00 1.90
3115 5322 5.032863 CAGCACATAGAAGCAAGTTTATGC 58.967 41.667 0.00 0.00 46.78 3.14
3125 5332 3.524541 GCAAGTTTATGCAAGGAATGGG 58.475 45.455 0.00 0.00 45.70 4.00
3126 5333 3.524541 CAAGTTTATGCAAGGAATGGGC 58.475 45.455 0.00 0.00 0.00 5.36
3127 5334 2.818921 AGTTTATGCAAGGAATGGGCA 58.181 42.857 0.00 0.00 42.43 5.36
3128 5335 3.172339 AGTTTATGCAAGGAATGGGCAA 58.828 40.909 0.00 0.00 41.43 4.52
3129 5336 3.196254 AGTTTATGCAAGGAATGGGCAAG 59.804 43.478 0.00 0.00 41.43 4.01
3130 5337 2.824689 TATGCAAGGAATGGGCAAGA 57.175 45.000 0.00 0.00 41.43 3.02
3131 5338 1.188863 ATGCAAGGAATGGGCAAGAC 58.811 50.000 0.00 0.00 41.43 3.01
3132 5339 0.178967 TGCAAGGAATGGGCAAGACA 60.179 50.000 0.00 0.00 34.05 3.41
3133 5340 0.968405 GCAAGGAATGGGCAAGACAA 59.032 50.000 0.00 0.00 0.00 3.18
3134 5341 1.344114 GCAAGGAATGGGCAAGACAAA 59.656 47.619 0.00 0.00 0.00 2.83
3135 5342 2.027837 GCAAGGAATGGGCAAGACAAAT 60.028 45.455 0.00 0.00 0.00 2.32
3136 5343 3.195396 GCAAGGAATGGGCAAGACAAATA 59.805 43.478 0.00 0.00 0.00 1.40
3137 5344 4.678840 GCAAGGAATGGGCAAGACAAATAG 60.679 45.833 0.00 0.00 0.00 1.73
3138 5345 3.026694 AGGAATGGGCAAGACAAATAGC 58.973 45.455 0.00 0.00 0.00 2.97
3139 5346 2.760092 GGAATGGGCAAGACAAATAGCA 59.240 45.455 0.00 0.00 0.00 3.49
3140 5347 3.195396 GGAATGGGCAAGACAAATAGCAA 59.805 43.478 0.00 0.00 0.00 3.91
3141 5348 3.874392 ATGGGCAAGACAAATAGCAAC 57.126 42.857 0.00 0.00 0.00 4.17
3142 5349 2.591923 TGGGCAAGACAAATAGCAACA 58.408 42.857 0.00 0.00 0.00 3.33
3143 5350 2.961741 TGGGCAAGACAAATAGCAACAA 59.038 40.909 0.00 0.00 0.00 2.83
3144 5351 3.577848 TGGGCAAGACAAATAGCAACAAT 59.422 39.130 0.00 0.00 0.00 2.71
3145 5352 4.040217 TGGGCAAGACAAATAGCAACAATT 59.960 37.500 0.00 0.00 0.00 2.32
3146 5353 4.996758 GGGCAAGACAAATAGCAACAATTT 59.003 37.500 0.00 0.00 0.00 1.82
3147 5354 5.469760 GGGCAAGACAAATAGCAACAATTTT 59.530 36.000 0.00 0.00 0.00 1.82
3148 5355 6.648725 GGGCAAGACAAATAGCAACAATTTTA 59.351 34.615 0.00 0.00 0.00 1.52
3149 5356 7.334171 GGGCAAGACAAATAGCAACAATTTTAT 59.666 33.333 0.00 0.00 0.00 1.40
3150 5357 8.170553 GGCAAGACAAATAGCAACAATTTTATG 58.829 33.333 0.00 0.00 0.00 1.90
3151 5358 7.689400 GCAAGACAAATAGCAACAATTTTATGC 59.311 33.333 0.00 0.00 40.34 3.14
3152 5359 8.710551 CAAGACAAATAGCAACAATTTTATGCA 58.289 29.630 8.95 0.00 42.45 3.96
3153 5360 8.830201 AGACAAATAGCAACAATTTTATGCAA 57.170 26.923 8.95 0.00 42.45 4.08
3154 5361 9.270640 AGACAAATAGCAACAATTTTATGCAAA 57.729 25.926 8.95 0.00 42.45 3.68
3155 5362 9.532697 GACAAATAGCAACAATTTTATGCAAAG 57.467 29.630 8.95 0.00 42.45 2.77
3156 5363 9.270640 ACAAATAGCAACAATTTTATGCAAAGA 57.729 25.926 8.95 0.00 42.45 2.52
3157 5364 9.532697 CAAATAGCAACAATTTTATGCAAAGAC 57.467 29.630 8.95 0.00 42.45 3.01
3158 5365 8.830201 AATAGCAACAATTTTATGCAAAGACA 57.170 26.923 8.95 0.00 42.45 3.41
3159 5366 6.774354 AGCAACAATTTTATGCAAAGACAG 57.226 33.333 8.95 0.00 42.45 3.51
3160 5367 5.697633 AGCAACAATTTTATGCAAAGACAGG 59.302 36.000 8.95 0.00 42.45 4.00
3161 5368 5.695816 GCAACAATTTTATGCAAAGACAGGA 59.304 36.000 0.00 0.00 39.81 3.86
3162 5369 6.346838 GCAACAATTTTATGCAAAGACAGGAC 60.347 38.462 0.00 0.00 39.81 3.85
3163 5370 6.403866 ACAATTTTATGCAAAGACAGGACA 57.596 33.333 0.00 0.00 0.00 4.02
3164 5371 6.815089 ACAATTTTATGCAAAGACAGGACAA 58.185 32.000 0.00 0.00 0.00 3.18
3165 5372 6.925165 ACAATTTTATGCAAAGACAGGACAAG 59.075 34.615 0.00 0.00 0.00 3.16
3166 5373 6.899393 ATTTTATGCAAAGACAGGACAAGA 57.101 33.333 0.00 0.00 0.00 3.02
3167 5374 5.947228 TTTATGCAAAGACAGGACAAGAG 57.053 39.130 0.00 0.00 0.00 2.85
3168 5375 3.777106 ATGCAAAGACAGGACAAGAGA 57.223 42.857 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 4.823989 GGAAGCAGTACCTTTATGATGCAT 59.176 41.667 0.00 0.00 36.15 3.96
317 321 6.519679 AAGTAGCAATGAAAGATGCATCAA 57.480 33.333 27.81 11.17 44.95 2.57
383 387 1.604693 CCGCACTAAACAAGACCTCGT 60.605 52.381 0.00 0.00 0.00 4.18
418 422 2.611473 CCTCTTCGTCATCACTGCACTT 60.611 50.000 0.00 0.00 0.00 3.16
431 435 2.177594 CTGCCCTTCAGCCTCTTCGT 62.178 60.000 0.00 0.00 35.78 3.85
523 528 1.352622 TTGAGGGCCTCCACAACAGT 61.353 55.000 30.03 0.00 38.42 3.55
638 643 0.394565 AGCCACGTTGCTCTCTCTTT 59.605 50.000 8.58 0.00 36.75 2.52
802 808 4.261801 TGGTGAAAAACTAGGCTAGCATC 58.738 43.478 21.26 11.28 0.00 3.91
857 863 3.535280 ATGCGTTTGTTCCCTGTTTTT 57.465 38.095 0.00 0.00 0.00 1.94
858 864 3.886505 TCTATGCGTTTGTTCCCTGTTTT 59.113 39.130 0.00 0.00 0.00 2.43
859 865 3.252458 GTCTATGCGTTTGTTCCCTGTTT 59.748 43.478 0.00 0.00 0.00 2.83
860 866 2.812011 GTCTATGCGTTTGTTCCCTGTT 59.188 45.455 0.00 0.00 0.00 3.16
861 867 2.224426 TGTCTATGCGTTTGTTCCCTGT 60.224 45.455 0.00 0.00 0.00 4.00
862 868 2.422597 TGTCTATGCGTTTGTTCCCTG 58.577 47.619 0.00 0.00 0.00 4.45
863 869 2.851263 TGTCTATGCGTTTGTTCCCT 57.149 45.000 0.00 0.00 0.00 4.20
864 870 3.071479 TCTTGTCTATGCGTTTGTTCCC 58.929 45.455 0.00 0.00 0.00 3.97
865 871 3.125316 CCTCTTGTCTATGCGTTTGTTCC 59.875 47.826 0.00 0.00 0.00 3.62
866 872 3.746492 ACCTCTTGTCTATGCGTTTGTTC 59.254 43.478 0.00 0.00 0.00 3.18
867 873 3.498397 CACCTCTTGTCTATGCGTTTGTT 59.502 43.478 0.00 0.00 0.00 2.83
868 874 3.067106 CACCTCTTGTCTATGCGTTTGT 58.933 45.455 0.00 0.00 0.00 2.83
869 875 3.067106 ACACCTCTTGTCTATGCGTTTG 58.933 45.455 0.00 0.00 29.79 2.93
870 876 3.402628 ACACCTCTTGTCTATGCGTTT 57.597 42.857 0.00 0.00 29.79 3.60
871 877 4.530710 TTACACCTCTTGTCTATGCGTT 57.469 40.909 0.00 0.00 39.91 4.84
872 878 4.243270 GTTTACACCTCTTGTCTATGCGT 58.757 43.478 0.00 0.00 39.91 5.24
873 879 3.303495 CGTTTACACCTCTTGTCTATGCG 59.697 47.826 0.00 0.00 39.91 4.73
874 880 3.617263 CCGTTTACACCTCTTGTCTATGC 59.383 47.826 0.00 0.00 39.91 3.14
875 881 4.181578 CCCGTTTACACCTCTTGTCTATG 58.818 47.826 0.00 0.00 39.91 2.23
876 882 3.369157 GCCCGTTTACACCTCTTGTCTAT 60.369 47.826 0.00 0.00 39.91 1.98
877 883 2.028748 GCCCGTTTACACCTCTTGTCTA 60.029 50.000 0.00 0.00 39.91 2.59
878 884 1.270678 GCCCGTTTACACCTCTTGTCT 60.271 52.381 0.00 0.00 39.91 3.41
879 885 1.154197 GCCCGTTTACACCTCTTGTC 58.846 55.000 0.00 0.00 39.91 3.18
880 886 0.250597 GGCCCGTTTACACCTCTTGT 60.251 55.000 0.00 0.00 42.84 3.16
881 887 1.296056 CGGCCCGTTTACACCTCTTG 61.296 60.000 0.00 0.00 0.00 3.02
882 888 1.004200 CGGCCCGTTTACACCTCTT 60.004 57.895 0.00 0.00 0.00 2.85
883 889 2.660802 CGGCCCGTTTACACCTCT 59.339 61.111 0.00 0.00 0.00 3.69
884 890 2.435410 CCGGCCCGTTTACACCTC 60.435 66.667 0.85 0.00 0.00 3.85
885 891 3.243816 ACCGGCCCGTTTACACCT 61.244 61.111 0.00 0.00 0.00 4.00
886 892 1.887344 TAGACCGGCCCGTTTACACC 61.887 60.000 0.00 0.00 0.00 4.16
887 893 0.037419 TTAGACCGGCCCGTTTACAC 60.037 55.000 0.00 0.00 0.00 2.90
888 894 0.903942 ATTAGACCGGCCCGTTTACA 59.096 50.000 0.00 0.00 0.00 2.41
889 895 2.866156 GTTATTAGACCGGCCCGTTTAC 59.134 50.000 0.00 0.00 0.00 2.01
890 896 2.481104 CGTTATTAGACCGGCCCGTTTA 60.481 50.000 0.00 0.00 0.00 2.01
891 897 1.740043 CGTTATTAGACCGGCCCGTTT 60.740 52.381 0.00 0.00 0.00 3.60
892 898 0.179103 CGTTATTAGACCGGCCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
893 899 1.037030 TCGTTATTAGACCGGCCCGT 61.037 55.000 0.00 0.00 0.00 5.28
894 900 0.102844 TTCGTTATTAGACCGGCCCG 59.897 55.000 0.00 0.00 0.00 6.13
895 901 1.861971 CTTCGTTATTAGACCGGCCC 58.138 55.000 0.00 0.00 0.00 5.80
896 902 1.215244 GCTTCGTTATTAGACCGGCC 58.785 55.000 0.00 0.00 0.00 6.13
897 903 1.591619 GTGCTTCGTTATTAGACCGGC 59.408 52.381 0.00 0.00 0.00 6.13
898 904 2.199236 GGTGCTTCGTTATTAGACCGG 58.801 52.381 0.00 0.00 0.00 5.28
899 905 1.850441 CGGTGCTTCGTTATTAGACCG 59.150 52.381 0.00 0.00 38.96 4.79
900 906 1.591619 GCGGTGCTTCGTTATTAGACC 59.408 52.381 1.77 0.00 0.00 3.85
901 907 1.254570 CGCGGTGCTTCGTTATTAGAC 59.745 52.381 0.00 0.00 0.00 2.59
902 908 1.552226 CGCGGTGCTTCGTTATTAGA 58.448 50.000 0.00 0.00 0.00 2.10
903 909 0.575390 CCGCGGTGCTTCGTTATTAG 59.425 55.000 19.50 0.00 0.00 1.73
904 910 0.806884 CCCGCGGTGCTTCGTTATTA 60.807 55.000 26.12 0.00 0.00 0.98
905 911 2.104253 CCCGCGGTGCTTCGTTATT 61.104 57.895 26.12 0.00 0.00 1.40
906 912 2.510691 CCCGCGGTGCTTCGTTAT 60.511 61.111 26.12 0.00 0.00 1.89
919 925 4.101790 CAACACCACATCGCCCGC 62.102 66.667 0.00 0.00 0.00 6.13
920 926 0.951525 TAACAACACCACATCGCCCG 60.952 55.000 0.00 0.00 0.00 6.13
921 927 0.519961 GTAACAACACCACATCGCCC 59.480 55.000 0.00 0.00 0.00 6.13
922 928 1.463444 GAGTAACAACACCACATCGCC 59.537 52.381 0.00 0.00 0.00 5.54
923 929 1.126113 CGAGTAACAACACCACATCGC 59.874 52.381 0.00 0.00 0.00 4.58
924 930 1.126113 GCGAGTAACAACACCACATCG 59.874 52.381 0.00 0.00 0.00 3.84
925 931 2.139917 TGCGAGTAACAACACCACATC 58.860 47.619 0.00 0.00 0.00 3.06
926 932 2.143122 CTGCGAGTAACAACACCACAT 58.857 47.619 0.00 0.00 0.00 3.21
927 933 1.577468 CTGCGAGTAACAACACCACA 58.423 50.000 0.00 0.00 0.00 4.17
928 934 0.234884 GCTGCGAGTAACAACACCAC 59.765 55.000 0.00 0.00 0.00 4.16
929 935 0.179070 TGCTGCGAGTAACAACACCA 60.179 50.000 0.00 0.00 0.00 4.17
930 936 0.512952 CTGCTGCGAGTAACAACACC 59.487 55.000 0.00 0.00 0.00 4.16
931 937 0.512952 CCTGCTGCGAGTAACAACAC 59.487 55.000 0.00 0.00 0.00 3.32
932 938 1.227999 GCCTGCTGCGAGTAACAACA 61.228 55.000 0.00 0.00 0.00 3.33
933 939 1.497722 GCCTGCTGCGAGTAACAAC 59.502 57.895 0.00 0.00 0.00 3.32
934 940 3.966215 GCCTGCTGCGAGTAACAA 58.034 55.556 0.00 0.00 0.00 2.83
947 953 2.601398 CGCTGGTATGCATCGCCTG 61.601 63.158 17.68 17.45 0.00 4.85
948 954 2.280389 CGCTGGTATGCATCGCCT 60.280 61.111 17.68 0.00 0.00 5.52
949 955 3.349006 CCGCTGGTATGCATCGCC 61.349 66.667 0.19 7.95 0.00 5.54
950 956 4.017877 GCCGCTGGTATGCATCGC 62.018 66.667 0.19 1.02 0.00 4.58
951 957 3.349006 GGCCGCTGGTATGCATCG 61.349 66.667 0.19 0.00 0.00 3.84
952 958 1.963338 GAGGCCGCTGGTATGCATC 60.963 63.158 0.19 0.00 0.00 3.91
953 959 2.111878 GAGGCCGCTGGTATGCAT 59.888 61.111 3.79 3.79 0.00 3.96
954 960 4.175337 GGAGGCCGCTGGTATGCA 62.175 66.667 6.40 0.00 0.00 3.96
955 961 2.893682 AAAGGAGGCCGCTGGTATGC 62.894 60.000 6.40 0.00 0.00 3.14
956 962 0.815615 GAAAGGAGGCCGCTGGTATG 60.816 60.000 6.40 0.00 0.00 2.39
957 963 1.527370 GAAAGGAGGCCGCTGGTAT 59.473 57.895 6.40 0.00 0.00 2.73
958 964 2.666098 GGAAAGGAGGCCGCTGGTA 61.666 63.158 6.40 0.00 0.00 3.25
959 965 4.035102 GGAAAGGAGGCCGCTGGT 62.035 66.667 6.40 0.00 0.00 4.00
965 971 2.359975 CCACACGGAAAGGAGGCC 60.360 66.667 0.00 0.00 0.00 5.19
966 972 1.966451 CACCACACGGAAAGGAGGC 60.966 63.158 0.00 0.00 35.59 4.70
967 973 1.302511 CCACCACACGGAAAGGAGG 60.303 63.158 0.00 0.00 35.59 4.30
968 974 1.302511 CCCACCACACGGAAAGGAG 60.303 63.158 0.00 0.00 35.59 3.69
969 975 1.131303 ATCCCACCACACGGAAAGGA 61.131 55.000 0.00 0.00 34.33 3.36
970 976 0.251165 AATCCCACCACACGGAAAGG 60.251 55.000 0.00 0.00 35.59 3.11
971 977 0.881118 CAATCCCACCACACGGAAAG 59.119 55.000 0.00 0.00 35.59 2.62
972 978 0.538516 CCAATCCCACCACACGGAAA 60.539 55.000 0.00 0.00 35.59 3.13
973 979 1.074072 CCAATCCCACCACACGGAA 59.926 57.895 0.00 0.00 35.59 4.30
974 980 2.753701 CCAATCCCACCACACGGA 59.246 61.111 0.00 0.00 35.59 4.69
975 981 2.361104 CCCAATCCCACCACACGG 60.361 66.667 0.00 0.00 38.77 4.94
976 982 1.074072 TTCCCAATCCCACCACACG 59.926 57.895 0.00 0.00 0.00 4.49
977 983 0.178975 TGTTCCCAATCCCACCACAC 60.179 55.000 0.00 0.00 0.00 3.82
978 984 0.558220 TTGTTCCCAATCCCACCACA 59.442 50.000 0.00 0.00 0.00 4.17
979 985 0.966179 GTTGTTCCCAATCCCACCAC 59.034 55.000 0.00 0.00 32.11 4.16
980 986 0.538516 CGTTGTTCCCAATCCCACCA 60.539 55.000 0.00 0.00 32.11 4.17
981 987 0.250989 TCGTTGTTCCCAATCCCACC 60.251 55.000 0.00 0.00 32.11 4.61
982 988 1.472480 CATCGTTGTTCCCAATCCCAC 59.528 52.381 0.00 0.00 32.11 4.61
983 989 1.832883 CATCGTTGTTCCCAATCCCA 58.167 50.000 0.00 0.00 32.11 4.37
984 990 0.455815 GCATCGTTGTTCCCAATCCC 59.544 55.000 0.00 0.00 32.11 3.85
985 991 0.455815 GGCATCGTTGTTCCCAATCC 59.544 55.000 0.00 0.00 32.11 3.01
986 992 1.463674 AGGCATCGTTGTTCCCAATC 58.536 50.000 0.00 0.00 32.11 2.67
987 993 2.643551 CTAGGCATCGTTGTTCCCAAT 58.356 47.619 0.00 0.00 32.11 3.16
988 994 1.948611 GCTAGGCATCGTTGTTCCCAA 60.949 52.381 0.00 0.00 0.00 4.12
989 995 0.392461 GCTAGGCATCGTTGTTCCCA 60.392 55.000 0.00 0.00 0.00 4.37
990 996 0.392461 TGCTAGGCATCGTTGTTCCC 60.392 55.000 0.00 0.00 31.71 3.97
991 997 1.009829 CTGCTAGGCATCGTTGTTCC 58.990 55.000 0.00 0.00 38.13 3.62
992 998 1.929836 CTCTGCTAGGCATCGTTGTTC 59.070 52.381 0.00 0.00 38.13 3.18
993 999 1.550524 TCTCTGCTAGGCATCGTTGTT 59.449 47.619 0.00 0.00 38.13 2.83
994 1000 1.134965 GTCTCTGCTAGGCATCGTTGT 60.135 52.381 0.00 0.00 38.13 3.32
995 1001 1.565305 GTCTCTGCTAGGCATCGTTG 58.435 55.000 0.00 0.00 38.13 4.10
996 1002 0.101399 CGTCTCTGCTAGGCATCGTT 59.899 55.000 0.00 0.00 38.13 3.85
997 1003 1.730487 CGTCTCTGCTAGGCATCGT 59.270 57.895 0.00 0.00 38.13 3.73
998 1004 1.659954 GCGTCTCTGCTAGGCATCG 60.660 63.158 0.00 0.00 38.13 3.84
999 1005 1.659954 CGCGTCTCTGCTAGGCATC 60.660 63.158 0.00 0.00 38.13 3.91
1000 1006 2.415010 CGCGTCTCTGCTAGGCAT 59.585 61.111 0.00 0.00 38.13 4.40
1001 1007 4.498520 GCGCGTCTCTGCTAGGCA 62.499 66.667 8.43 0.00 36.92 4.75
1002 1008 4.498520 TGCGCGTCTCTGCTAGGC 62.499 66.667 8.43 0.00 0.00 3.93
1003 1009 2.278466 CTGCGCGTCTCTGCTAGG 60.278 66.667 8.43 0.00 0.00 3.02
1004 1010 0.734253 AAACTGCGCGTCTCTGCTAG 60.734 55.000 8.43 0.00 0.00 3.42
1005 1011 0.319555 AAAACTGCGCGTCTCTGCTA 60.320 50.000 8.43 0.00 0.00 3.49
1008 1014 1.698165 TAGAAAACTGCGCGTCTCTG 58.302 50.000 8.43 0.00 0.00 3.35
1027 1033 9.554395 TTCTGTGTTTTCTTTTCTTTTTCCTTT 57.446 25.926 0.00 0.00 0.00 3.11
1030 1036 7.445040 CGTTCTGTGTTTTCTTTTCTTTTTCC 58.555 34.615 0.00 0.00 0.00 3.13
1037 1043 2.213353 GCGCGTTCTGTGTTTTCTTTTC 59.787 45.455 8.43 0.00 0.00 2.29
1041 1047 0.027586 GTGCGCGTTCTGTGTTTTCT 59.972 50.000 8.43 0.00 0.00 2.52
1042 1048 0.928451 GGTGCGCGTTCTGTGTTTTC 60.928 55.000 8.43 0.00 0.00 2.29
1044 1050 2.713154 GGTGCGCGTTCTGTGTTT 59.287 55.556 8.43 0.00 0.00 2.83
1045 1051 3.636043 CGGTGCGCGTTCTGTGTT 61.636 61.111 8.43 0.00 0.00 3.32
1194 1200 2.264794 CGAAACGGGAGAGGGGTG 59.735 66.667 0.00 0.00 0.00 4.61
1204 1210 2.114670 ATGGCAGATGGCGAAACGG 61.115 57.895 1.68 0.00 46.16 4.44
1304 1310 2.443016 CTCCTCCTCCCACTCCGG 60.443 72.222 0.00 0.00 0.00 5.14
1313 1319 1.152652 TCCATCGCCTCTCCTCCTC 60.153 63.158 0.00 0.00 0.00 3.71
1351 1357 2.996621 GAGGAAGAACAATCACCTCGTG 59.003 50.000 0.00 0.00 39.63 4.35
1352 1358 2.028020 GGAGGAAGAACAATCACCTCGT 60.028 50.000 0.00 0.00 44.75 4.18
1353 1359 2.622436 GGAGGAAGAACAATCACCTCG 58.378 52.381 0.00 0.00 44.75 4.63
1360 1366 1.641192 GGAAGGGGGAGGAAGAACAAT 59.359 52.381 0.00 0.00 0.00 2.71
1372 1378 0.253894 AAATCGTAACGGGAAGGGGG 59.746 55.000 0.00 0.00 0.00 5.40
1381 1390 1.056726 CGTCACGGACAAATCGTAACG 59.943 52.381 0.00 0.00 44.01 3.18
1422 1431 2.801162 CGATACAGATCCGCCGCG 60.801 66.667 5.59 5.59 0.00 6.46
1814 1823 1.500396 GACGATGGCGGTTTTGTCC 59.500 57.895 0.00 0.00 43.17 4.02
1913 1922 0.461135 GCAATAACGGGACCGGTAGA 59.539 55.000 7.34 0.00 45.12 2.59
2009 2018 3.329889 AGCGATGCCACTTCCCCA 61.330 61.111 0.00 0.00 0.00 4.96
2051 2060 1.726853 CCAAGTACTCCAAGGCTTCG 58.273 55.000 0.00 0.00 0.00 3.79
2093 2102 2.470057 TGCCATAATTCCTTTCCCCC 57.530 50.000 0.00 0.00 0.00 5.40
2134 2143 3.836562 GGTGTAGAAAGGAACCCTGTCTA 59.163 47.826 8.47 8.47 45.68 2.59
2149 2158 2.366533 GTCATCTCCTGACGGTGTAGA 58.633 52.381 0.00 0.00 44.58 2.59
2174 2183 7.451255 AGAAGAGAGAACATTCTTGAGAAGAGA 59.549 37.037 0.00 0.00 39.03 3.10
2217 2226 9.692749 ATGAGAATTATTGCAATGATGACATTC 57.307 29.630 22.27 13.10 43.76 2.67
2221 2230 9.181805 CAGAATGAGAATTATTGCAATGATGAC 57.818 33.333 22.27 15.55 39.69 3.06
2265 2274 9.847224 AGAAACCGATACTGTCCATAAAATTAT 57.153 29.630 0.00 0.00 0.00 1.28
2278 2287 7.581476 ACATGTAACAAAAGAAACCGATACTG 58.419 34.615 0.00 0.00 0.00 2.74
2326 2347 2.531508 GCTCTCTTTTTGTTGTTGCACG 59.468 45.455 0.00 0.00 0.00 5.34
2334 2355 3.891977 GGAAAGGAGGCTCTCTTTTTGTT 59.108 43.478 23.05 8.64 39.33 2.83
2474 2509 7.380870 GCACTATCTGATAGATACACACAAGTG 59.619 40.741 26.93 15.33 42.41 3.16
2510 2735 3.221771 AGATGTGCTTTGCTTTGGTACA 58.778 40.909 0.00 0.00 0.00 2.90
2514 2739 9.188588 CATATATTTAGATGTGCTTTGCTTTGG 57.811 33.333 0.00 0.00 0.00 3.28
2602 2911 7.388776 TGACACCTAAGAAGAGATGAACAAATG 59.611 37.037 0.00 0.00 0.00 2.32
2617 2926 6.472016 TCAATGCAAACTATGACACCTAAGA 58.528 36.000 0.00 0.00 0.00 2.10
2618 2927 6.741992 TCAATGCAAACTATGACACCTAAG 57.258 37.500 0.00 0.00 0.00 2.18
2619 2928 7.517614 TTTCAATGCAAACTATGACACCTAA 57.482 32.000 0.00 0.00 0.00 2.69
2620 2929 7.362834 CCATTTCAATGCAAACTATGACACCTA 60.363 37.037 0.00 0.00 35.08 3.08
2621 2930 6.392354 CATTTCAATGCAAACTATGACACCT 58.608 36.000 0.00 0.00 0.00 4.00
2622 2931 5.577945 CCATTTCAATGCAAACTATGACACC 59.422 40.000 0.00 0.00 35.08 4.16
2623 2932 6.308766 GTCCATTTCAATGCAAACTATGACAC 59.691 38.462 0.00 0.00 35.08 3.67
2624 2933 6.015603 TGTCCATTTCAATGCAAACTATGACA 60.016 34.615 0.00 0.00 35.08 3.58
2645 2954 0.247736 ATCACGTGAGAAGGCTGTCC 59.752 55.000 24.41 0.00 0.00 4.02
2650 2959 5.545658 TTGATTAAATCACGTGAGAAGGC 57.454 39.130 24.41 11.55 39.39 4.35
2746 3055 2.295885 GCAGAGAGGATCAAACATGGG 58.704 52.381 0.00 0.00 37.82 4.00
2805 3429 7.606456 TCTGTGTAAACTTTCAATCAGATACCC 59.394 37.037 0.00 0.00 0.00 3.69
2831 5038 9.671279 AAAATCAAATTTCTTGGTTCTCTTTGT 57.329 25.926 0.00 0.00 0.00 2.83
2934 5141 5.763204 GGTAATTTCTTGTCTCTTGGTCACA 59.237 40.000 0.00 0.00 0.00 3.58
2937 5144 5.763204 TGTGGTAATTTCTTGTCTCTTGGTC 59.237 40.000 0.00 0.00 0.00 4.02
2969 5176 4.527816 AGGTTTGCATCCAATGTTACATGT 59.472 37.500 2.69 2.69 0.00 3.21
2970 5177 4.865925 CAGGTTTGCATCCAATGTTACATG 59.134 41.667 0.00 0.00 0.00 3.21
2971 5178 4.081531 CCAGGTTTGCATCCAATGTTACAT 60.082 41.667 10.40 0.00 0.00 2.29
2972 5179 3.257873 CCAGGTTTGCATCCAATGTTACA 59.742 43.478 10.40 0.00 0.00 2.41
2973 5180 3.509575 TCCAGGTTTGCATCCAATGTTAC 59.490 43.478 10.40 0.00 0.00 2.50
2974 5181 3.772387 TCCAGGTTTGCATCCAATGTTA 58.228 40.909 10.40 0.00 0.00 2.41
2975 5182 2.607499 TCCAGGTTTGCATCCAATGTT 58.393 42.857 10.40 0.00 0.00 2.71
2976 5183 2.307496 TCCAGGTTTGCATCCAATGT 57.693 45.000 10.40 0.00 0.00 2.71
2977 5184 3.681593 TTTCCAGGTTTGCATCCAATG 57.318 42.857 10.40 2.16 0.00 2.82
2978 5185 4.914177 AATTTCCAGGTTTGCATCCAAT 57.086 36.364 10.40 0.32 0.00 3.16
2979 5186 4.703379 AAATTTCCAGGTTTGCATCCAA 57.297 36.364 10.40 0.00 0.00 3.53
2980 5187 4.703379 AAAATTTCCAGGTTTGCATCCA 57.297 36.364 10.40 0.00 0.00 3.41
2981 5188 5.179929 CAGAAAAATTTCCAGGTTTGCATCC 59.820 40.000 2.37 0.00 37.92 3.51
2982 5189 5.759763 ACAGAAAAATTTCCAGGTTTGCATC 59.240 36.000 2.37 0.00 37.92 3.91
2983 5190 5.683681 ACAGAAAAATTTCCAGGTTTGCAT 58.316 33.333 2.37 0.00 37.92 3.96
2984 5191 5.096443 ACAGAAAAATTTCCAGGTTTGCA 57.904 34.783 2.37 0.00 37.92 4.08
2985 5192 6.512297 TCTACAGAAAAATTTCCAGGTTTGC 58.488 36.000 2.37 0.00 37.92 3.68
2986 5193 8.197439 AGTTCTACAGAAAAATTTCCAGGTTTG 58.803 33.333 2.37 0.00 37.92 2.93
2987 5194 8.306313 AGTTCTACAGAAAAATTTCCAGGTTT 57.694 30.769 2.37 0.00 37.92 3.27
2988 5195 7.898014 AGTTCTACAGAAAAATTTCCAGGTT 57.102 32.000 2.37 0.00 37.92 3.50
2989 5196 7.898014 AAGTTCTACAGAAAAATTTCCAGGT 57.102 32.000 2.37 2.44 37.92 4.00
3001 5208 9.706691 CTTGTACCAGAATAAAGTTCTACAGAA 57.293 33.333 0.00 0.00 0.00 3.02
3002 5209 8.867097 ACTTGTACCAGAATAAAGTTCTACAGA 58.133 33.333 0.08 0.00 0.00 3.41
3003 5210 9.490379 AACTTGTACCAGAATAAAGTTCTACAG 57.510 33.333 0.08 0.00 36.59 2.74
3004 5211 9.841295 AAACTTGTACCAGAATAAAGTTCTACA 57.159 29.630 0.08 0.00 39.49 2.74
3030 5237 9.706691 ACTGAACTCTCTTGTCGAAAATTATAA 57.293 29.630 0.00 0.00 0.00 0.98
3031 5238 9.355215 GACTGAACTCTCTTGTCGAAAATTATA 57.645 33.333 0.00 0.00 0.00 0.98
3032 5239 7.332182 GGACTGAACTCTCTTGTCGAAAATTAT 59.668 37.037 0.00 0.00 31.19 1.28
3033 5240 6.645415 GGACTGAACTCTCTTGTCGAAAATTA 59.355 38.462 0.00 0.00 31.19 1.40
3034 5241 5.467063 GGACTGAACTCTCTTGTCGAAAATT 59.533 40.000 0.00 0.00 31.19 1.82
3035 5242 4.991687 GGACTGAACTCTCTTGTCGAAAAT 59.008 41.667 0.00 0.00 31.19 1.82
3036 5243 4.142026 TGGACTGAACTCTCTTGTCGAAAA 60.142 41.667 0.00 0.00 31.19 2.29
3037 5244 3.383505 TGGACTGAACTCTCTTGTCGAAA 59.616 43.478 0.00 0.00 31.19 3.46
3038 5245 2.956333 TGGACTGAACTCTCTTGTCGAA 59.044 45.455 0.00 0.00 31.19 3.71
3039 5246 2.583143 TGGACTGAACTCTCTTGTCGA 58.417 47.619 0.00 0.00 31.19 4.20
3040 5247 3.057245 TGATGGACTGAACTCTCTTGTCG 60.057 47.826 0.00 0.00 31.19 4.35
3041 5248 4.527509 TGATGGACTGAACTCTCTTGTC 57.472 45.455 0.00 0.00 0.00 3.18
3042 5249 4.590647 TCTTGATGGACTGAACTCTCTTGT 59.409 41.667 0.00 0.00 0.00 3.16
3043 5250 5.144692 TCTTGATGGACTGAACTCTCTTG 57.855 43.478 0.00 0.00 0.00 3.02
3044 5251 7.344093 TGATATCTTGATGGACTGAACTCTCTT 59.656 37.037 3.98 0.00 0.00 2.85
3045 5252 6.838090 TGATATCTTGATGGACTGAACTCTCT 59.162 38.462 3.98 0.00 0.00 3.10
3046 5253 7.048629 TGATATCTTGATGGACTGAACTCTC 57.951 40.000 3.98 0.00 0.00 3.20
3047 5254 7.429374 TTGATATCTTGATGGACTGAACTCT 57.571 36.000 3.98 0.00 0.00 3.24
3048 5255 8.498054 TTTTGATATCTTGATGGACTGAACTC 57.502 34.615 3.98 0.00 0.00 3.01
3049 5256 8.868522 TTTTTGATATCTTGATGGACTGAACT 57.131 30.769 3.98 0.00 0.00 3.01
3078 5285 8.978874 TTCTATGTGCTGTCCATTATTTGTAT 57.021 30.769 0.00 0.00 0.00 2.29
3079 5286 7.012327 GCTTCTATGTGCTGTCCATTATTTGTA 59.988 37.037 0.00 0.00 0.00 2.41
3080 5287 6.183360 GCTTCTATGTGCTGTCCATTATTTGT 60.183 38.462 0.00 0.00 0.00 2.83
3081 5288 6.183360 TGCTTCTATGTGCTGTCCATTATTTG 60.183 38.462 0.00 0.00 0.00 2.32
3082 5289 5.887598 TGCTTCTATGTGCTGTCCATTATTT 59.112 36.000 0.00 0.00 0.00 1.40
3083 5290 5.439721 TGCTTCTATGTGCTGTCCATTATT 58.560 37.500 0.00 0.00 0.00 1.40
3084 5291 5.039920 TGCTTCTATGTGCTGTCCATTAT 57.960 39.130 0.00 0.00 0.00 1.28
3085 5292 4.486125 TGCTTCTATGTGCTGTCCATTA 57.514 40.909 0.00 0.00 0.00 1.90
3086 5293 3.354948 TGCTTCTATGTGCTGTCCATT 57.645 42.857 0.00 0.00 0.00 3.16
3087 5294 3.276857 CTTGCTTCTATGTGCTGTCCAT 58.723 45.455 0.00 0.00 0.00 3.41
3088 5295 2.038952 ACTTGCTTCTATGTGCTGTCCA 59.961 45.455 0.00 0.00 0.00 4.02
3089 5296 2.704572 ACTTGCTTCTATGTGCTGTCC 58.295 47.619 0.00 0.00 0.00 4.02
3090 5297 4.756084 AAACTTGCTTCTATGTGCTGTC 57.244 40.909 0.00 0.00 0.00 3.51
3091 5298 5.392380 GCATAAACTTGCTTCTATGTGCTGT 60.392 40.000 0.00 0.00 39.57 4.40
3092 5299 5.032863 GCATAAACTTGCTTCTATGTGCTG 58.967 41.667 0.00 0.00 39.57 4.41
3093 5300 4.701651 TGCATAAACTTGCTTCTATGTGCT 59.298 37.500 0.00 0.00 43.18 4.40
3094 5301 4.985413 TGCATAAACTTGCTTCTATGTGC 58.015 39.130 0.00 0.00 43.18 4.57
3095 5302 6.032094 CCTTGCATAAACTTGCTTCTATGTG 58.968 40.000 0.00 0.00 43.18 3.21
3096 5303 5.945784 TCCTTGCATAAACTTGCTTCTATGT 59.054 36.000 0.00 0.00 43.18 2.29
3097 5304 6.441093 TCCTTGCATAAACTTGCTTCTATG 57.559 37.500 0.00 0.00 43.18 2.23
3098 5305 7.417116 CCATTCCTTGCATAAACTTGCTTCTAT 60.417 37.037 0.00 0.00 43.18 1.98
3099 5306 6.127647 CCATTCCTTGCATAAACTTGCTTCTA 60.128 38.462 0.00 0.00 43.18 2.10
3100 5307 5.337009 CCATTCCTTGCATAAACTTGCTTCT 60.337 40.000 0.00 0.00 43.18 2.85
3101 5308 4.866486 CCATTCCTTGCATAAACTTGCTTC 59.134 41.667 0.00 0.00 43.18 3.86
3102 5309 4.322953 CCCATTCCTTGCATAAACTTGCTT 60.323 41.667 0.00 0.00 43.18 3.91
3103 5310 3.196254 CCCATTCCTTGCATAAACTTGCT 59.804 43.478 0.00 0.00 43.18 3.91
3104 5311 3.524541 CCCATTCCTTGCATAAACTTGC 58.475 45.455 0.00 0.00 43.07 4.01
3105 5312 3.055963 TGCCCATTCCTTGCATAAACTTG 60.056 43.478 0.00 0.00 0.00 3.16
3106 5313 3.172339 TGCCCATTCCTTGCATAAACTT 58.828 40.909 0.00 0.00 0.00 2.66
3107 5314 2.818921 TGCCCATTCCTTGCATAAACT 58.181 42.857 0.00 0.00 0.00 2.66
3108 5315 3.195396 TCTTGCCCATTCCTTGCATAAAC 59.805 43.478 0.00 0.00 34.51 2.01
3109 5316 3.195396 GTCTTGCCCATTCCTTGCATAAA 59.805 43.478 0.00 0.00 34.51 1.40
3110 5317 2.760092 GTCTTGCCCATTCCTTGCATAA 59.240 45.455 0.00 0.00 34.51 1.90
3111 5318 2.291475 TGTCTTGCCCATTCCTTGCATA 60.291 45.455 0.00 0.00 34.51 3.14
3112 5319 1.188863 GTCTTGCCCATTCCTTGCAT 58.811 50.000 0.00 0.00 34.51 3.96
3113 5320 0.178967 TGTCTTGCCCATTCCTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
3114 5321 0.968405 TTGTCTTGCCCATTCCTTGC 59.032 50.000 0.00 0.00 0.00 4.01
3115 5322 3.967332 ATTTGTCTTGCCCATTCCTTG 57.033 42.857 0.00 0.00 0.00 3.61
3116 5323 3.448660 GCTATTTGTCTTGCCCATTCCTT 59.551 43.478 0.00 0.00 0.00 3.36
3117 5324 3.026694 GCTATTTGTCTTGCCCATTCCT 58.973 45.455 0.00 0.00 0.00 3.36
3118 5325 2.760092 TGCTATTTGTCTTGCCCATTCC 59.240 45.455 0.00 0.00 0.00 3.01
3119 5326 4.176271 GTTGCTATTTGTCTTGCCCATTC 58.824 43.478 0.00 0.00 0.00 2.67
3120 5327 3.577848 TGTTGCTATTTGTCTTGCCCATT 59.422 39.130 0.00 0.00 0.00 3.16
3121 5328 3.164268 TGTTGCTATTTGTCTTGCCCAT 58.836 40.909 0.00 0.00 0.00 4.00
3122 5329 2.591923 TGTTGCTATTTGTCTTGCCCA 58.408 42.857 0.00 0.00 0.00 5.36
3123 5330 3.658757 TTGTTGCTATTTGTCTTGCCC 57.341 42.857 0.00 0.00 0.00 5.36
3124 5331 6.544038 AAAATTGTTGCTATTTGTCTTGCC 57.456 33.333 0.00 0.00 0.00 4.52
3125 5332 7.689400 GCATAAAATTGTTGCTATTTGTCTTGC 59.311 33.333 1.43 0.00 33.61 4.01
3126 5333 8.710551 TGCATAAAATTGTTGCTATTTGTCTTG 58.289 29.630 8.44 0.00 37.28 3.02
3127 5334 8.830201 TGCATAAAATTGTTGCTATTTGTCTT 57.170 26.923 8.44 0.00 37.28 3.01
3128 5335 8.830201 TTGCATAAAATTGTTGCTATTTGTCT 57.170 26.923 8.44 0.00 37.28 3.41
3129 5336 9.532697 CTTTGCATAAAATTGTTGCTATTTGTC 57.467 29.630 8.44 0.00 37.28 3.18
3130 5337 9.270640 TCTTTGCATAAAATTGTTGCTATTTGT 57.729 25.926 8.44 0.00 37.28 2.83
3131 5338 9.532697 GTCTTTGCATAAAATTGTTGCTATTTG 57.467 29.630 8.44 0.00 37.28 2.32
3132 5339 9.270640 TGTCTTTGCATAAAATTGTTGCTATTT 57.729 25.926 8.44 0.00 37.28 1.40
3133 5340 8.830201 TGTCTTTGCATAAAATTGTTGCTATT 57.170 26.923 8.44 0.00 37.28 1.73
3134 5341 7.546667 CCTGTCTTTGCATAAAATTGTTGCTAT 59.453 33.333 8.44 0.00 37.28 2.97
3135 5342 6.867816 CCTGTCTTTGCATAAAATTGTTGCTA 59.132 34.615 8.44 0.06 37.28 3.49
3136 5343 5.697633 CCTGTCTTTGCATAAAATTGTTGCT 59.302 36.000 8.44 0.00 37.28 3.91
3137 5344 5.695816 TCCTGTCTTTGCATAAAATTGTTGC 59.304 36.000 0.00 1.64 36.91 4.17
3138 5345 6.700960 TGTCCTGTCTTTGCATAAAATTGTTG 59.299 34.615 0.00 0.00 0.00 3.33
3139 5346 6.815089 TGTCCTGTCTTTGCATAAAATTGTT 58.185 32.000 0.00 0.00 0.00 2.83
3140 5347 6.403866 TGTCCTGTCTTTGCATAAAATTGT 57.596 33.333 0.00 0.00 0.00 2.71
3141 5348 7.147312 TCTTGTCCTGTCTTTGCATAAAATTG 58.853 34.615 0.00 0.00 0.00 2.32
3142 5349 7.231317 TCTCTTGTCCTGTCTTTGCATAAAATT 59.769 33.333 0.00 0.00 0.00 1.82
3143 5350 6.716628 TCTCTTGTCCTGTCTTTGCATAAAAT 59.283 34.615 0.00 0.00 0.00 1.82
3144 5351 6.061441 TCTCTTGTCCTGTCTTTGCATAAAA 58.939 36.000 0.00 0.00 0.00 1.52
3145 5352 5.620206 TCTCTTGTCCTGTCTTTGCATAAA 58.380 37.500 0.00 0.00 0.00 1.40
3146 5353 5.227569 TCTCTTGTCCTGTCTTTGCATAA 57.772 39.130 0.00 0.00 0.00 1.90
3147 5354 4.890158 TCTCTTGTCCTGTCTTTGCATA 57.110 40.909 0.00 0.00 0.00 3.14
3148 5355 3.777106 TCTCTTGTCCTGTCTTTGCAT 57.223 42.857 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.